ID:

dps_2970

 Coordinate:

XR_group6:1142527-1142677 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.4 -31.4 -31.3

Flybase annnotation

CDS [Dpse\GA22138-cds]; exon [dpse_GLEANR_12827:7]; intron [Dpse\GA22138-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTCGCCGCCAGGTACAAGGCGGCAACAGACACCAATACACCAAAAGCAAGGTTTGTGTTGTTGCTGTGTGTGTGTGTGCGAGCGAGCGAGTGTTTGTGTGCGTGCGTGCGTGTGCGTGTGTGTGTGGAGAGCCAGTGCTGGCTAGCGTTTTTTAGTAACCGCTATAAAGCTTCTCCTCTTCCGTTCTCCTTCTCTAACCCACTCTTCTCTCTGTCTGTCTTCCTTCTCTCTGTCTCTCTCTCTCTCTCTCT
**************************************************........................((((((.(((.(((.((........)).))).))).))))))......((.((((((.....(((...(((((.((......)).)))))...))).....))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M059
embryo
 V112
male body		 M040
female body
 GSM444067
head
 GSM343916
embryo
........................................................................TGTGTGCGAGCGAGCGAGTGTTT............................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
........CAGGTACAAGGCGGCAACAGACACC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................AGTGCTGGATAGGGTTTTT................................................................................................... 19 2 3 0.67 2 0 0 2 0 0 0
....................................................TTGTGTTGTTGCTGTGTGTG................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 1 0 0
............................................AGCAAGGTCTGAGTTCTTGCT.......................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0
...........................................................................................................................................................................................................................TTCCTTCCCTCGGTCTCACTCTCT........ 24 3 4 0.25 1 0 0 0 0 0 1
.............................................................................................................................................................................................................CATCACTGTCTGTCTTCCTTC......................... 21 3 7 0.14 1 0 0 0 0 1 0
..........................................................................................................................................................................................................TCTTCTCTTTGACTGTCTTGC............................ 21 3 12 0.08 1 0 0 1 0 0 0
.....................................................................................GAGAGTGTTTGTGTGCGT.................................................................................................................................................... 18 1 14 0.07 1 0 0 0 1 0 0
.............................................................................................................................................................................................................................CCTTCTCTCTGTCTGTTTCTCTC....... 23 2 17 0.06 1 1 0 0 0 0 0

Anti-sense strand reads

CAGCGGCGGTCCATGTTCCGCCGTTGTCTGTGGTTATGTGGTTTTCGTTCCAAACACAACAACGACACACACACACACGCTCGCTCGCTCACAAACACACGCACGCACGCACACGCACACACACACCTCTCGGTCACGACCGATCGCAAAAAATCATTGGCGATATTTCGAAGAGGAGAAGGCAAGAGGAAGAGATTGGGTGAGAAGAGAGACAGACAGAAGGAAGAGAGACAGAGAGAGAGAGAGAGAGA
**************************************************........................((((((.(((.(((.((........)).))).))).))))))......((.((((((.....(((...(((((.((......)).)))))...))).....))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body
........................................................................................................................................................................................AGTGGAAGAGATTGGGTC................................................. 18 2 4 1.25 5 5 0 0
..................................................................................................................................................CGAAAAATCATTGGCGATATATAG................................................................................. 24 3 1 1.00 1 0 1 0
.......................................................................................................................................................................TCGACGAGGAGAAGGCCAG................................................................. 19 2 4 0.25 1 1 0 0
............................................................................................................................................................GTGGCGATAGTTCGAAGAT............................................................................ 19 3 6 0.17 1 0 1 0
.........................................................................................................................................................................................................................................GAGAGAGAGAGAGAGAGA 18 0 20 0.15 3 3 0 0
.........................GACTGCGGTTAGGTGGTTTT.............................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 1
.......................................................................................................................................................................................AAGTGGAAGAGATTGGGTCT................................................ 20 3 9 0.11 1 1 0 0
........................................................................................................................................................................................AGTGGAAGAGATTGGGTCTG............................................... 20 3 11 0.09 1 1 0 0
..............GTCCCGCAGTTGTCTGAGG.......................................................................................................................................................................................................................... 19 3 15 0.07 1 1 0 0
........................................................................................................................................................................................AGTGGAAGAGATTGGGTCT................................................ 19 3 17 0.06 1 0 0 1
.............................GTGCTTGGGTGGTTTTCGTT.......................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:1142477-1142727 + dps_2970 GTCG------------CCGCCA---GGTACAAGGCGGCA--------ACAGACA------CCAAT---ACACCAAAAGCAAGGTTTG-----T---GTTGT----------TGCTGTGTGTG--TGT--GTG------------------CGAG---CG----A---------------GCG-AGT---GTTTGTGTGCGTGCGTGCGTGTGCGTGTGTGTGTG-------------------------------------------------------------------------------GAGAGCCAGTGC----------TGGCTA----------G---CGT--------TTTTTAG-T---------------------------------------------AACCGCTA-TAAA------G--------------------------------------------------------------------------------------------------------C--------------TTCTCCTCTTC-------CGTTCTCCTTCTCTA-------ACCCACTCTTCTCTCTGTCTG---------------------------------------------------------------------------------------------------------------T----C----TTCCT----TCT-------CTCTGTCTCTCTCTC----------------TCTCTCTCT
droPer2 scaffold_12:1830810-1831066 + dpe_718 GTCG------------CCGCCA---GGTACAAGGCGGCA--------ACAGACA------CCAAT---ACACCAAAAGCAAGGTTTG-----T---GTTGT----------TGCTGTGTGTG--TGT--GTGTGTGTGC--------GAGCGAG---CG----A---------------GCG-AGT---GTTTGTGTGCGTGCGTGCGTGTGCGTGTGTGTGTG-------------------------------------------------------------------------------GAGAGCCAGTGC----------TGGCTA----------G---CGT--------TTTTTAG-T---------------------------------------------AACCGCTA-TAAA------G--------------------------------------------------------------------------------------------------------C--------------TTCTCCTCTTC-------CGTTCTCCTTCTCTA-------ACCCACTCTTCTCTCTGTCTG---------------------------------------------------------------------------------------------------------------T----C----TTCCTTC-----------TC----TCTGTCTCTC----------------TCTCTCTCT
droWil2 scf2_1100000004963:4346602-4346818 - ACAT------------ATA----------------TATA--------TCAGATA------CATAT---AT-----------------------------------------ATTTGTGTGTATATGC--ATATGT------------------G---TGTGTGTG---------------------TGT----GTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTA----------------------------------------------GTTGTAACTTCAGTTCAGA---CAAGCTGCGAGGTGAACAGGAACAG----------GA----------G---CAA--------G-----------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------GTGTCTCTCTTTCCGTCT-------------------------CCCTC---------------------------------------------------------------------------------------------TCTGT-------CTTGCTTT--------CCA--T----C----T-----CTTACACTC---TCGC--ATT-CTCTCT----------------TTCATTCTC
droVir3 scaffold_13246:2572874-2573117 + GGTA------------ATA-------------GACAACT--------TTTGATACGCGTGGCAAAAACTTTTCAAA---AAGCTTCG-----T---GT-------------TGTCGTGTATG--TG------------------------------------------------------------TGT----GCGTGTGTGTGTACCTGGGACTGTTTCTGCGT----------------------------------------------GTTTCTATC-------TG------------TTGAA----------------------------------------------------------------------------------------------------------------G-----------TGCTTC------------------------------------A------AATGATAGCCGCTGGTTAACATGGCCAAAAAAAAACCTTGCCATCT----------------------CTCTCTCCCTT------------------TCTCTC-------TCTCTCTCTC-TCTCTCT------------------------------------------------------------------------------------C---------------TCTCTCTCTCTCTC---------------TC-----------TC----TCTCTCTCTC----------------TCTCTCTCT
droMoj3 scaffold_6540:20042841-20043086 - AACG------------CTGCAATTTGACACAA-GCATCG--------ACAAACA----GGCCAAA---GAAAGAACCGCAAAG-------------------------------CGTGCGTGCGT--GTATG------------------------------------------------------TGT--------------GTGTGTGTGAGTGTATTGGTGTACCCGAATGCT-AGACTTGTCTTTAGCACGTTG--------------------------------GCTTTGTAG----------------------------------------------CGT----------TTTATGT-----------------------------CCTGCGGC--------TTGCATTA-TAAA------ATTAGTG----------------------------------------------------------------------------------------------------------------------ACATGA-------CAGTCT---------------------------------------------------------------------------------------------------------CAAAATCGTCTAATTGTGCCAACATCCTT------------------TCGGGAAA---TC-----------TG----TCTCGCTCTC----------------TCTCACTCT
droGri2 scaffold_15110:19428038-19428283 + CGCC--------------GCT------TACAGGGCGAAATGCACTTCAAAAATA------GAAAT---GCAAGAAAATAAAGGGTTAA----AAGTGC-------------TAACGTGTGCG--AGC--GTGTGT------------------A---TGAGTGTG---------------------TGT----GTGTGTGTGTATGTGTGTGTGTGTGTGTGTGT--------GTT---------------T--ATCC--------TGTAT---------------CC-------------TTGAAATGCAACGC----------ATGGTC----------G---CA---------------------------------------------------------------AACTGAAA-TAATATTTTC--------------------------------------------------------------------------------------------------------------GCTCA------------TTTGCGT---------------------------GTCA-------------------------------------------------------------GTTC-----------------------------TCTAT-------CTATCTGT--------CTA--T----C---------TC-----------TG----TCTCTATCTC----------------TGCCTCTGT
droAna3 scaffold_13117:4642350-4642561 - TT---G---------------------------------------------------------------------------------TGTTG-------GA----------TGCTGTGTGTGTGT--GTGTG------------------------------------------------------TGT----GTGTGTGTGTCTGTGTGGCACGCCCC--------------------------------CTTAACG--------------------------------CCCCCGGCATGCA------A-----ATGCGATGTGATGTTGACTCTATAAAGC--TGC--------GATTCAG-C---------------------------------------------TGTTGCC--------------------------------------------------------------------------------------------------------ATCGAT-------T--------------TTCCACTCCTC-------CTCCCCCTCTCACCA-------GCCTATCC---TCTTTCT------------------------------------------------------------------------------------C---------------TC------------T----T----TTC-----CTTCCCCTTTTC----ATTCTTTTTC----------------TCTTTCCTT
droBip1 scf7180000396541:831162-831470 + AACA------------ACAACA---ACAACAACACTACA--------ACAGACA------CCAAT---ATACCAAAACAAAGGTTTG-----T---GT-------------TGCTGTGAGTG--GA---------------------------------------GTGGAGTGGCGTGTGT-TC---ATTA--T----------------------------------------------------------------------------------------------------------------AGCCAGTGC----------TGCCTA----------T----G----------TTTTAGTT---------------------------------------------TACCGCTA-TTCA------G--------------------------------------------TTTTC-------------------------------------TAT--TTTG-T------------------T---T-----------------CCAACTCCTACTACTACTCC--TCCTACTCTTCTCTT-------CTTGATCTGCACAGAAAAATACGATTTGAATCATGTTCAATCATGTCTCTTGAAGTCTCTTGATTATCAAAAGCTTCTCTTAAGAATAACAC------------------TTTTTCTGTGCACTT-------------TC----ACTCTT-TCT----------------CTTAATACT
droKik1 scf7180000302696:1912575-1912750 + TGCC-----------------------------------------------------------------------------------TGTGT-------G-TGTGTG-----------ACTG--G----------------------------C---TTACTCTG---------------------CGA----GTGTGTGTGCGAGTGTGTGGCTGTGTCGGTGT--------CA---------------TTACATCG--------------------------------CCAGTTAAG----------------------------------------------CGC--TTACACG----------------------------------------------CTTCAA--------------------------------------------------------------------------------------------------------------------------------------------------TTTCT-------CGCTTGCCACTTATG-------GCCCAACATT-----------------------------C--------------------------GTCGC-----------------------------CTTT-------CGTCCTT------------------TTCGCAC-----A-----------TT----GCCCGCGCGC----------------GCTCGTTCG
droFic1 scf7180000452523:1215181-1215387 + AAAG--------------------------------------------------------------------------CAAAGTG--TGTTT-------GT----------ATCT-CATGT---------------GGT---GGGGGGA-TGAACGGG--G--A-GGGAGAGTGTATATAT-A---TGT------------------GTGTGT--GT--G----T--------GTGT-----------------ATTATATTATTTTGTGCGCCGCCATT-------TA------------CGAAA----------------------------------------------------------------------------------------------------------------GCGACATTTTC--------------------------------------------------AGTGATAAG-----------A----------------------------------TAACGGCACATTGCTGGGTCCCCT--------------------------------------CCT-----------------------------T--------------------------TCTGT-------CTC------------------TCTGT-------CTC------------------T----G----TTC-----CTC-------CC----TCTT-CCATT----------------ACCCCCTCA
droEle1 scf7180000491006:1754444-1754648 + CC---G---------------------------------------------------------------------------------TG--------C-------------AGCTGTGTGCG--TGC--T-----------------------G---GGCGCGTG---------------------TGT----GTGTGTGTGTGAGTTAGTGTGTGTGTGTGTGGC-------CC---------------GTTTAATG--------------------------------GCCACAAAGCGGA------A-----ACTGGA-GCGTGGCTGCTTC-------------------------------TACGTCTTCGGCCGATGCAGCTGCATTAGCAGCCATTTGCAGAA------------------------------------------G------------------------------------------------------------------------------------------------------------------------CCATT-------------------G--CATATGT------------------------------------------------------------------------------------G---------------TGTTTGTTACTCTC---------------TC-----------TC----TCTCTCTCTC----------------TCTCTCTCT
droRho1 scf7180000779763:217136-217336 + TGTG-----------------------------------------------------------------------------------TGTGC-------G-TG---------------AGTG-----------------------------------CGTGTGTG---------------------TGT----GCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGAA------TCA---------------ATTTGATG--------------------------------GCAAAAAAG----------------------------------------------TAT--------TTTTTAT-TTAACTTCTAGGGGTCATTTTGCCTTTTTTACTGCCATTTTCCCCA------------------------------------------G------------------------------------------------------------------------------------------------------------------------CGTTTTCCT-------ACCCACTCCT-----------------------------C--------------------------CTCGC-------TTT------------------TCTA--------------------CTTCGTCTT---------------TC-----------TT----TTTTCCTTGT----------------TTCCTTTTC
droBia1 scf7180000299102:1720243-1720444 + GT---G---------------------------------------------------------------------------------TGTGT-------G-TG--CG-------------------C--T----------------------AG---GGCG--C-CCGCGTG--------------TGT----GTGTGTGTGTGTGTGTGCGAGTGCGCTGGTGT------------------------------------------------------------------TGAAAAA-------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATCTCTT-------------------------------------CGCTACGCA-T------------------TTTCACCC----C----------------CCGTTTTT--------GCGTATTTCATCGCTCTTCCTCTTGCTCTGTATCAGCACA-------------------------GCCGC-----------------------------CTGT-------GCGTCTGT------------------GTGC---------------------------GTG-AGTGCGTTCTCTGCTTTCGTTTTTTAATT
droTak1 scf7180000415319:69152-69314 - AACT---TTCGGGGCAAAAACC---ACAGCAACACCACA--------ACAGACA------CCAAT---ATACCAAAACAAAGGTTTG-----T---GT--------------------------------------GTT---GAGTGGAGTGAA-GTG--A--A-GTGAAGTGGCGTCTGT-TC---ATTA--T----------------------------------------------------------------------------------------------------------------AGCCAGTGC----------TGCCTA----------T----G----------TTTTAGTT---------------------------------------------TAACGCTA-TTCA------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCT----------------CTTTTTCAT
droEug1 scf7180000409110:1151632-1151801 + CT---G---------------------------------------------------------------------------------TGTGT-------A-TC--TGTGTG-------AGTGAGT--ATTTG------------------------------------------------------TAT----GTGTGTGTGTGTGTGTGGCTCTGTGTCTGTGTA----------------------------------------------ATG---------------G---CAGGATGCAACATGAA-----AATGGC-GTGTGGCTA----------GCAACGT----------TTTATTT---------------------------------------------GCTCGTTC-TGCT------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTC-----------------------------CGTTT-------CTGCCTT--------------T----T----CCCCT-------------TC----TCCCCG-TCT----------------CCCCTTTCT
dm3 chr2L:14115828-14116016 - TGTG-----------------------------------------------------------------------------------TGTTT-------G-------------TTGTGCTTG--GGC--TTGTGC------------------T---TGCG----------------------AGT---GTTTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTG------------------------------------------------CCCCTA----------------------------------GCCTTTA----------GG----------C---TAT--------GAACATC-A---------------------------------------------TCTTC---------------------------------------------------------------------------------------------------------------TCTCGGCACTCTCTCCCATTGTCGGCT----------------------TCTCTCG-------ACTTGTTTGCTTATTTGTTTG---------------------------------------------------------------------------------------------------------------T----T----TTG-----CCTCC-----AC----TTTGCTCTTT----------------CCTGTCTTC
droSim2 3l:20557547-20557703 - TCCACCTTTAGAGCCAAAAACC---ACAGCAACACCACC--------ACAGACA------CCAAT---ATACCAAAACAAAGGTTTG-----T---GT--------------------------------------GTT---GAGTGGAGTGA----------A-GTGAAGTGGCGTCTGT-TC---ATTA--T----------------------------------------------------------------------------------------------------------------AGCCAGTGC----------TGCCTA----------T----A----------TTTTAGGT---------------------------------------------TAACGCTA-TTCA------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------TTCTCTTTT
droSec2 scaffold_73:4624-4781 + GT---G---------------------------------------------------------------------------------TGTGT-------G-TG--TGTGTG-------TGTGTGT--GTGTG------------------TGTG---TG----T---------------GTG-TGT---GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------------------------------------------------------------AGGAGGCTGGCCAGGG----------GG----------G---CGT--------GGCTGCA-G---------------------------------------------TACCG---------------------------------------------------------------------------------------------------------------TTGTCAAGCTCTCTCTCCCTGGAGGA------------------------------------------------TCCTTC----------------------------------------------------------------------------------------------------------------------------------------------------------CCTGT----------------GTTCGCTTT
droYak3 3L:16445605-16445844 - TT---G---------------------------------------------------------------------------------TATCT-------GT----------ATCTGTGTGTGTGT--GTGTG------------------CGAG---TGTG--A-GTGAGTGTGTGCGTGT-GT---GT------------------TTGTGC------GGGGG---------------------------TCTATTG--------------------------------ATATTCGAGGGTT------T-----GCTGGT-GTGCGTGTGC------------------------------------------------------------------------------------TG-TGTA------CGTAGTGCCCGTTATCGGAAGAAAACGCCAAAAGCTCGCGTTCATTGCCT-------------------------------------TTGCAAACG-T------------------TTTCAGCC----------------------CCTCCCT--------CCCTCTCTCCTCGTTCTCTG---------------------------------------------------------------------------------------------------------------T----C----TCG-----TTCTCTC---TA----GCTGCCCTCT----------------CCCTCGCTC
droEre2 scaffold_4690:1863108-1863278 - TATG-----------------------------------------------------------------------------------TGTGT-------A-TC--TG-------------------C--TGC----TGCGCAGGACAGT-CGATTTGC--A--T-G--------------------TGT----GAGTGTGTGTGTGTGTGTATGTGC--A----T--------ATAC-----------------ATCT-----------------------------------------------------------------------TA----------T----GTACTTGCGTT----------------------------------------------CTTCTG--------------------------------------------------------------------------------------------------------------------------------------------------AT--TCGTTTGC---------------TCTCCTCTTTTGCTCTCCTTTT------------------------CG-------------------------GACGC-----------------------------CTTT-------TCTCCTC------------------TTTGC---------------------------GCATTGAT----------------TTTTCTCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTCG------------CCGCCA---GGTACAAGGCGGCA--------ACAGACA------CCAAT---ACACCAAAAGCAAGGTTTG-----T---GTTGT----------TGCTGTGTGTG--TGT--GTG------------------CGAG---CG----A---------------GCG-AGT---GTTTGTGTGCGTGCGTGCGTGTGCGTGTGTGTGTG-------------------------------------------------------------------------------GAGAGCCAGTGC----------TGGCTA----------G---CGT--------TTTTTAG-T---------------------------------------------AACCGCTA-TAAA------G--------------------------------------------------------------------------------------------------------C--------------TTCTCCTCTTC-------CGTTCTCCTTCTCTA-------ACCCACTCTTCTCTCTGTCTG---------------------------------------------------------------------------------------------------------------T----C----TTCCT----TCT-------CTCTGTCTCTCTCTC----------------TCTCTCTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................TGT--GTG------------------CGAG---CG----A---------------GCG-AGT---GTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000010
....................CA---GGTACAAGGCGGCA--------ACAGACA------CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
....................................................................................TTG-----T---GTTGT----------TGCTGTGTGTG--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
droPer2
GTCG------------CCGCCA---GGTACAAGGCGGCA--------ACAGACA------CCAAT---ACACCAAAAGCAAGGTTTG-----T---GTTGT----------TGCTGTGTGTG--TGT--GTGTGTGTGC--------GAGCGAG---CG----A---------------GCG-AGT---GTTTGTGTGCGTGCGTGCGTGTGCGTGTGTGTGTG-------------------------------------------------------------------------------GAGAGCCAGTGC----------TGGCTA----------G---CGT--------TTTTTAG-T---------------------------------------------AACCGCTA-TAAA------G--------------------------------------------------------------------------------------------------------C--------------TTCTCCTCTTC-------CGTTCTCCTTCTCTA-------ACCCACTCTTCTCTCTGTCTG---------------------------------------------------------------------------------------------------------------T----C----TTCCTTC-----------TC----TCTGTCTCTC----------------TCTCTCTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................A---GGTACAAGGCGGCA--------ACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...............................................ACAGACA------CCAAT---ACACCAAAAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
................................................................................................................................................................................................TGTGTGCGTGCGTGCGTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071000001
..................................................................................................................TGTGTGTG--TGT--GTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100
droWil2
ACAT------------ATA----------------TATA--------TCAGATA------CATAT---AT-----------------------------------------ATTTGTGTGTATATGC--ATATGT------------------G---TGTGTGTG---------------------TGT----GTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTA----------------------------------------------GTTGTAACTTCAGTTCAGA---CAAGCTGCGAGGTGAACAGGAACAG----------GA----------G---CAA--------G-----------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------GTGTCTCTCTTTCCGTCT-------------------------CCCTC---------------------------------------------------------------------------------------------TCTGT-------CTTGCTTT--------CCA--T----C----T-----CTTACACTC---TCGC--ATT-CTCTCT----------------TTCATTCTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GGTA------------ATA-------------GACAACT--------TTTGATACGCGTGGCAAAAACTTTTCAAA---AAGCTTCG-----T---GT-------------TGTCGTGTATG--TG------------------------------------------------------------TGT----GCGTGTGTGTGTACCTGGGACTGTTTCTGCGT----------------------------------------------GTTTCTATC-------TG------------TTGAA----------------------------------------------------------------------------------------------------------------G-----------TGCTTC------------------------------------A------AATGATAGCCGCTGGTTAACATGGCCAAAAAAAAACCTTGCCATCT----------------------CTCTCTCCCTT------------------TCTCTC-------TCTCTCTCTC-TCTCTCT------------------------------------------------------------------------------------C---------------TCTCTCTCTCTCTC---------------TC-----------TC----TCTCTCTCTC----------------TCTCTCTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................TG--TG------------------------------------------------------------TGT----GCGTGTGTGTGTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.111000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTC-TCTCTCT------------------------------------------------------------------------------------C---------------TCTCTCTCTCTC.......................................................................24200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
AACG------------CTGCAATTTGACACAA-GCATCG--------ACAAACA----GGCCAAA---GAAAGAACCGCAAAG-------------------------------CGTGCGTGCGT--GTATG------------------------------------------------------TGT--------------GTGTGTGTGAGTGTATTGGTGTACCCGAATGCT-AGACTTGTCTTTAGCACGTTG--------------------------------GCTTTGTAG----------------------------------------------CGT----------TTTATGT-----------------------------CCTGCGGC--------TTGCATTA-TAAA------ATTAGTG----------------------------------------------------------------------------------------------------------------------ACATGA-------CAGTCT---------------------------------------------------------------------------------------------------------CAAAATCGTCTAATTGTGCCAACATCCTT------------------TCGGGAAA---TC-----------TG----TCTCGCTCTC----------------TCTCACTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CGCC--------------GCT------TACAGGGCGAAATGCACTTCAAAAATA------GAAAT---GCAAGAAAATAAAGGGTTAA----AAGTGC-------------TAACGTGTGCG--AGC--GTGTGT------------------A---TGAGTGTG---------------------TGT----GTGTGTGTGTATGTGTGTGTGTGTGTGTGTGT--------GTT---------------T--ATCC--------TGTAT---------------CC-------------TTGAAATGCAACGC----------ATGGTC----------G---CA---------------------------------------------------------------AACTGAAA-TAATATTTTC--------------------------------------------------------------------------------------------------------------GCTCA------------TTTGCGT---------------------------GTCA-------------------------------------------------------------GTTC-----------------------------TCTAT-------CTATCTGT--------CTA--T----C---------TC-----------TG----TCTCTATCTC----------------TGCCTCTGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TT---G---------------------------------------------------------------------------------TGTTG-------GA----------TGCTGTGTGTGTGT--GTGTG------------------------------------------------------TGT----GTGTGTGTGTCTGTGTGGCACGCCCC--------------------------------CTTAACG--------------------------------CCCCCGGCATGCA------A-----ATGCGATGTGATGTTGACTCTATAAAGC--TGC--------GATTCAG-C---------------------------------------------TGTTGCC--------------------------------------------------------------------------------------------------------ATCGAT-------T--------------TTCCACTCCTC-------CTCCCCCTCTCACCA-------GCCTATCC---TCTTTCT------------------------------------------------------------------------------------C---------------TC------------T----T----TTC-----CTTCCCCTTTTC----ATTCTTTTTC----------------TCTTTCCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................ATAAAGC--TGC--------GATTCAG-C---------------------------------------------TGTTGCC--------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................2511.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----ATTCTTTTTC----------------TCTTTCCTA2120.501010000
...............................................................................................................................GTGTG------------------------------------------------------TGT----GTGTGTGTGTCTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
droBip1
AACA------------ACAACA---ACAACAACACTACA--------ACAGACA------CCAAT---ATACCAAAACAAAGGTTTG-----T---GT-------------TGCTGTGAGTG--GA---------------------------------------GTGGAGTGGCGTGTGT-TC---ATTA--T----------------------------------------------------------------------------------------------------------------AGCCAGTGC----------TGCCTA----------T----G----------TTTTAGTT---------------------------------------------TACCGCTA-TTCA------G--------------------------------------------TTTTC-------------------------------------TAT--TTTG-T------------------T---T-----------------CCAACTCCTACTACTACTCC--TCCTACTCTTCTCTT-------CTTGATCTGCACAGAAAAATACGATTTGAATCATGTTCAATCATGTCTCTTGAAGTCTCTTGATTATCAAAAGCTTCTCTTAAGAATAACAC------------------TTTTTCTGTGCACTT-------------TC----ACTCTT-TCT----------------CTTAATACTSizeHit CountTotal NormTotal
No Reads
droKik1
TGCC-----------------------------------------------------------------------------------TGTGT-------G-TGTGTG-----------ACTG--G----------------------------C---TTACTCTG---------------------CGA----GTGTGTGTGCGAGTGTGTGGCTGTGTCGGTGT--------CA---------------TTACATCG--------------------------------CCAGTTAAG----------------------------------------------CGC--TTACACG----------------------------------------------CTTCAA--------------------------------------------------------------------------------------------------------------------------------------------------TTTCT-------CGCTTGCCACTTATG-------GCCCAACATT-----------------------------C--------------------------GTCGC-----------------------------CTTT-------CGTCCTT------------------TTCGCAC-----A-----------TT----GCCCGCGCGC----------------GCTCGTTCGSizeHit CountTotal NormTotal
No Reads
droFic1
AAAG--------------------------------------------------------------------------CAAAGTG--TGTTT-------GT----------ATCT-CATGT---------------GGT---GGGGGGA-TGAACGGG--G--A-GGGAGAGTGTATATAT-A---TGT------------------GTGTGT--GT--G----T--------GTGT-----------------ATTATATTATTTTGTGCGCCGCCATT-------TA------------CGAAA----------------------------------------------------------------------------------------------------------------GCGACATTTTC--------------------------------------------------AGTGATAAG-----------A----------------------------------TAACGGCACATTGCTGGGTCCCCT--------------------------------------CCT-----------------------------T--------------------------TCTGT-------CTC------------------TCTGT-------CTC------------------T----G----TTC-----CTC-------CC----TCTT-CCATT----------------ACCCCCTCASizeHit CountTotal NormTotal
No Reads
droEle1
CC---G---------------------------------------------------------------------------------TG--------C-------------AGCTGTGTGCG--TGC--T-----------------------G---GGCGCGTG---------------------TGT----GTGTGTGTGTGAGTTAGTGTGTGTGTGTGTGGC-------CC---------------GTTTAATG--------------------------------GCCACAAAGCGGA------A-----ACTGGA-GCGTGGCTGCTTC-------------------------------TACGTCTTCGGCCGATGCAGCTGCATTAGCAGCCATTTGCAGAA------------------------------------------G------------------------------------------------------------------------------------------------------------------------CCATT-------------------G--CATATGT------------------------------------------------------------------------------------G---------------TGTTTGTTACTCTC---------------TC-----------TC----TCTCTCTCTC----------------TCTCTCTCTSizeHit CountTotal NormTotal
No Reads
droRho1
TGTG-----------------------------------------------------------------------------------TGTGC-------G-TG---------------AGTG-----------------------------------CGTGTGTG---------------------TGT----GCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGAA------TCA---------------ATTTGATG--------------------------------GCAAAAAAG----------------------------------------------TAT--------TTTTTAT-TTAACTTCTAGGGGTCATTTTGCCTTTTTTACTGCCATTTTCCCCA------------------------------------------G------------------------------------------------------------------------------------------------------------------------CGTTTTCCT-------ACCCACTCCT-----------------------------C--------------------------CTCGC-------TTT------------------TCTA--------------------CTTCGTCTT---------------TC-----------TT----TTTTCCTTGT----------------TTCCTTTTCSizeHit CountTotal NormTotal
No Reads
droBia1
GT---G---------------------------------------------------------------------------------TGTGT-------G-TG--CG-------------------C--T----------------------AG---GGCG--C-CCGCGTG--------------TGT----GTGTGTGTGTGTGTGTGCGAGTGCGCTGGTGT------------------------------------------------------------------TGAAAAA-------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATCTCTT-------------------------------------CGCTACGCA-T------------------TTTCACCC----C----------------CCGTTTTT--------GCGTATTTCATCGCTCTTCCTCTTGCTCTGTATCAGCACA-------------------------GCCGC-----------------------------CTGT-------GCGTCTGT------------------GTGC---------------------------GTG-AGTGCGTTCTCTGCTTTCGTTTTTTAATTSizeHit CountTotal NormTotal
No Reads
droTak1
AACT---TTCGGGGCAAAAACC---ACAGCAACACCACA--------ACAGACA------CCAAT---ATACCAAAACAAAGGTTTG-----T---GT--------------------------------------GTT---GAGTGGAGTGAA-GTG--A--A-GTGAAGTGGCGTCTGT-TC---ATTA--T----------------------------------------------------------------------------------------------------------------AGCCAGTGC----------TGCCTA----------T----G----------TTTTAGTT---------------------------------------------TAACGCTA-TTCA------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCT----------------CTTTTTCATSizeHit CountTotal NormTotal
No Reads
droEug1
CT---G---------------------------------------------------------------------------------TGTGT-------A-TC--TGTGTG-------AGTGAGT--ATTTG------------------------------------------------------TAT----GTGTGTGTGTGTGTGTGGCTCTGTGTCTGTGTA----------------------------------------------ATG---------------G---CAGGATGCAACATGAA-----AATGGC-GTGTGGCTA----------GCAACGT----------TTTATTT---------------------------------------------GCTCGTTC-TGCT------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTC-----------------------------CGTTT-------CTGCCTT--------------T----T----CCCCT-------------TC----TCCCCG-TCT----------------CCCCTTTCTSizeHit CountTotal NormTotal
No Reads
dm3
TGTG-----------------------------------------------------------------------------------TGTTT-------G-------------TTGTGCTTG--GGC--TTGTGC------------------T---TGCG----------------------AGT---GTTTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTG------------------------------------------------CCCCTA----------------------------------GCCTTTA----------GG----------C---TAT--------GAACATC-A---------------------------------------------TCTTC---------------------------------------------------------------------------------------------------------------TCTCGGCACTCTCTCCCATTGTCGGCT----------------------TCTCTCG-------ACTTGTTTGCTTATTTGTTTG---------------------------------------------------------------------------------------------------------------T----T----TTG-----CCTCC-----AC----TTTGCTCTTT----------------CCTGTCTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................TGCG----------------------AGT---GTTTGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................TT-------G-------------TTGTGCTTG--GGC--TTGTGC------------------T---TGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTG---------------------------------------------------------------------------------------------------------------T----T----TTG-----CCTCC-----AC----TTTG...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GTTTGTGTGTGTGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TTTGTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000001000100
...............................................................................................................................................................CG----------------------AGT---GTTTGTGTGTGTGTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................CG----------------------AGT---GTTTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................AGT---GTTTGTGTGTGTGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................................TTGTGTGTGTGTGTGTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
........................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGTGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
...............................................................................................................................................................CG----------------------AGT---GTTTGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................G----------------------AGT---GTTTGTGTGTGTGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................GTGTGTGTGTGTGTGTGCGTGTG------------------------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................TGCG----------------------AGT---GTTTGTGTGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................................................................................................................................................................................AGT---GTTTGTGTGTGTGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................G----------------------AGT---GTTTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AGT---GTTTGTGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................GTGTGTGTGTGTGTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................TGTGTGTGTGTGTGCGTGTG------------------------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................TGTGTGTGTGTGCGTGTG------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TTTGTGTGTGTGTGTGTGTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................................................................................................TGTGTGTGTGTGTGTGCGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TGTGTGTGTGTGTGCGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................TTGTGTGTGTGTGTGTGTGTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
........................................................................................................................................................................................GT---GTTTGTGTGTGTGTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................GTGTGTGTGTGTGTGCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................GTGTGTGTGTGTGTGCGTGTG------------------------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................................................................................GTTTGTGTGTGTGTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droSim2
TCCACCTTTAGAGCCAAAAACC---ACAGCAACACCACC--------ACAGACA------CCAAT---ATACCAAAACAAAGGTTTG-----T---GT--------------------------------------GTT---GAGTGGAGTGA----------A-GTGAAGTGGCGTCTGT-TC---ATTA--T----------------------------------------------------------------------------------------------------------------AGCCAGTGC----------TGCCTA----------T----A----------TTTTAGGT---------------------------------------------TAACGCTA-TTCA------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------TTCTCTTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................C--------ACAGACA------CCAAT---ATACCAAAACAAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
.................................................................................................T--------------------------------------GTT---GAGTGGAGTGA----------A-GTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
...................................................................................................................................................................................GT-TC---ATTA--T----------------------------------------------------------------------------------------------------------------AGCCAGTGC----------TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
.................................................................................................T--------------------------------------GTT---GAGTGGAGTGA----------A-GTGAAGTGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
droSec2
GT---G---------------------------------------------------------------------------------TGTGT-------G-TG--TGTGTG-------TGTGTGT--GTGTG------------------TGTG---TG----T---------------GTG-TGT---GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------------------------------------------------------------AGGAGGCTGGCCAGGG----------GG----------G---CGT--------GGCTGCA-G---------------------------------------------TACCG---------------------------------------------------------------------------------------------------------------TTGTCAAGCTCTCTCTCCCTGGAGGA------------------------------------------------TCCTTC----------------------------------------------------------------------------------------------------------------------------------------------------------CCTGT----------------GTTCGCTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................G--TGTGTG-------TGTGTGT--GTGTG------------------TGTG---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.2040004
.......................................................................................TGTGT-------G-TG--TGTGTG-------TGTGTGT--GTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530300
..................................................................................................................................TG------------------TGTG---TG----T---------------GTG-TGT---GTGTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
........................................................................................................................TGTGT--GTGTG------------------TGTG---TG----T---------------GTG-TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300
.......................................................................................TGTGT-------G-TG--TGTGTG-------TGTGTGT--GTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530300
...................................................................................................................................................................T---------------GTG-TGT---GTGTGTGTGTGTGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
............................................................................................................................T--GTGTG------------------TGTG---TG----T---------------GTG-TGT---GTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300
.............................................................................................................................................................TG----T---------------GTG-TGT---GTGTGTGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
.......................................................................................TGTGT-------G-TG--TGTGTG-------TGTGTGT--GTGTG------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1530003
......................................................................................................................................................TGTG---TG----T---------------GTG-TGT---GTGTGTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
..........................................................................................................................TGT--GTGTG------------------TGTG---TG----T---------------GTG-TGT---G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300
........................................................................................................................................................TG---TG----T---------------GTG-TGT---GTGTGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
...............................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
........................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
.....................................................................................................................................................................................G-TGT---GTGTGTGTGTGTGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
..........................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
.......................................................................................................................................................GTG---TG----T---------------GTG-TGT---GTGTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
.............................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
...........................................................................................................................GT--GTGTG------------------TGTG---TG----T---------------GTG-TGT---GTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
...................................................................................................................................................................................GTG-TGT---GTGTGTGTGTGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
.................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
............................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
...............................................................................................................................GTGTG------------------TGTG---TG----T---------------GTG-TGT---GTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
.................................................................................................................................GTG------------------TGTG---TG----T---------------GTG-TGT---GTGTGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
........................................................................................................................................................................................GT---GTGTGTGTGTGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
...................................................................................................................................G------------------TGTG---TG----T---------------GTG-TGT---GTGTGTGTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
......................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
................................................................................................................................................................................................................TGTGTGTGTGTGTGTG-------------------------------------------------------------------------------AGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
......................................................................................................................TGTGTGT--GTGTG------------------TGTG---TG----T---------------GTG-TGT---GT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
........................................................................................................................TGTGT--GTGTG------------------TGTG---TG----T---------------GTG-TGT---GTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
..........................................................................................................................TGT--GTGTG------------------TGTG---TG----T---------------GTG-TGT---GTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
droYak3
TT---G---------------------------------------------------------------------------------TATCT-------GT----------ATCTGTGTGTGTGT--GTGTG------------------CGAG---TGTG--A-GTGAGTGTGTGCGTGT-GT---GT------------------TTGTGC------GGGGG---------------------------TCTATTG--------------------------------ATATTCGAGGGTT------T-----GCTGGT-GTGCGTGTGC------------------------------------------------------------------------------------TG-TGTA------CGTAGTGCCCGTTATCGGAAGAAAACGCCAAAAGCTCGCGTTCATTGCCT-------------------------------------TTGCAAACG-T------------------TTTCAGCC----------------------CCTCCCT--------CCCTCTCTCCTCGTTCTCTG---------------------------------------------------------------------------------------------------------------T----C----TCG-----TTCTCTC---TA----GCTGCCCTCT----------------CCCTCGCTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TATG-----------------------------------------------------------------------------------TGTGT-------A-TC--TG-------------------C--TGC----TGCGCAGGACAGT-CGATTTGC--A--T-G--------------------TGT----GAGTGTGTGTGTGTGTGTATGTGC--A----T--------ATAC-----------------ATCT-----------------------------------------------------------------------TA----------T----GTACTTGCGTT----------------------------------------------CTTCTG--------------------------------------------------------------------------------------------------------------------------------------------------AT--TCGTTTGC---------------TCTCCTCTTTTGCTCTCCTTTT------------------------CG-------------------------GACGC-----------------------------CTTT-------TCTCCTC------------------TTTGC---------------------------GCATTGAT----------------TTTTCTCTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................T-G--------------------TGT----GAGTGTGTGTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000000

Generated: 05/18/2015 at 05:50 AM