ID:

dps_2964

 Coordinate:

XR_group6:1004576-1004726 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.5 -5.8 -5.8

Flybase annnotation

CDS [Dpse\GA23656-cds]; exon [dpse_GLEANR_12816:5]; intron [Dpse\GA23656-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCCAGGTGCAGACCCTGCAGGGGCATCAGATCATAGGCAACTTGAATCAGGTGAATATGACTGATTTCCAACAACAGCAGCCACAGCAGCAGCCACCACAACAGCAAACACAACCCCAACAGACGCTCTGATCGGACAAGACCGAAACGTAGAATCTATTATTATAATCTGTTCTACTCTTATATAAACTGCTTGCGTAGCTCATTTCTAAACGAAGGGAAAGTCAAAACTGGCTCTCGATGGACGGCCAG
************************************************************************************************........................(((..((.((.((((......))))..)).))..)))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M059
embryo
 M040
female body
 GSM444067
head
 M062
head
 SRR902012
CNS imaginal disc
 V112
male body		 GSM343916
embryo
......................................................................................................................................................................................................................AAGTGAAAGTCAAAACTGGCT................ 21 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................CTAAACGAAGGGAAAGTCAAAACTG................... 25 0 1 1.00 1 1 0 0 0 0 0 0
......................................AGTTTGAATCAGGTGAATATGACT............................................................................................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................CGTAGCTCATTTCTAAACGAAGGGAA.............................. 26 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................AAACTGGCTCTCGATGGAC...... 19 0 1 1.00 1 1 0 0 0 0 0 0
.........AGACCCTGCAGGGGCATCAGATCATAGGC..................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 1 0
................................................................................................CACAACAGCAAACACAACCCCAAC................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
........................................CTTGAATCAGGTGAATATGACTG............................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0
...................GGGGCATCAGATCATAGGCAA................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0
........................ATCAGATCATAGGCAACTTGAATCAGGT....................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................AAGACCGAAACGTAGAATCT.............................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0
................GCAGGGGCATCAGATCATAGGCAA................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................TCAAAACTGGCTCTCGATGGACGG.... 24 0 1 1.00 1 0 1 0 0 0 0 0
.................CAGGGGCATCAGATCATAGGC..................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................................GACGCTCTGATCGGACAAGACCGAAAC....................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................AAAACTGGCTCTCGATGGAC...... 20 0 1 1.00 1 0 0 0 0 0 0 1
..........................................................................................................................ACGCTCTGATCGGACAAGACC............................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................ACACAACCCCAACAGACGCTCT.......................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
........................................CTTGAATCAGGTGAATATGACTGATTTC....................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................AACAGACGCTCTGATCGGAC.................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................AACAGACGCTCTGATCGGA................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................GTAAAACTGGCTCTCGATGAA....... 21 3 4 0.25 1 0 1 0 0 0 0 0
...........................................................................................................ACACAACTCCATCAGGCGCTC........................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0
..........................................TGAAACGGGTGAATATGTCTG............................................................................................................................................................................................ 21 3 4 0.25 1 0 1 0 0 0 0 0
...........................................GAATCAGGTGAATAGTCCTGA........................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0
............................................AATCAGGTTAATATTCCTGA........................................................................................................................................................................................... 20 3 11 0.18 2 0 2 0 0 0 0 0
...........................................GAATCAGGTGAATATTCCT............................................................................................................................................................................................. 19 2 6 0.17 1 0 1 0 0 0 0 0
................................................................................................................................TGATCGGACAAGACAGAGAA....................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0
...........................................GAAACAGGTGAATATTCCTG............................................................................................................................................................................................ 20 3 11 0.09 1 0 1 0 0 0 0 0
........................................................................................................................................................................................TAAACCGGGTGCGTAGCT................................................. 18 3 16 0.06 1 0 1 0 0 0 0 0
..................................................................................................................................................ACATAGAATCTATTAGCAT...................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

GGGTCCACGTCTGGGACGTCCCCGTAGTCTAGTATCCGTTGAACTTAGTCCACTTATACTGACTAAAGGTTGTTGTCGTCGGTGTCGTCGTCGGTGGTGTTGTCGTTTGTGTTGGGGTTGTCTGCGAGACTAGCCTGTTCTGGCTTTGCATCTTAGATAATAATATTAGACAAGATGAGAATATATTTGACGAACGCATCGAGTAAAGATTTGCTTCCCTTTCAGTTTTGACCGAGAGCTACCTGCCGGTC
**********************************************************************************************........................(((..((.((.((((......))))..)).))..)))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM444067
head
................................................................AAAGGTTGTTGTCGTAGATG....................................................................................................................................................................... 20 2 2 0.50 1 1 0
................................................................AAAGGTTGTTGTCGTAGAT........................................................................................................................................................................ 19 2 4 0.25 1 1 0
......................................................................................................................................................................................................TTGAGTAAAGTTTTACTTCCCT............................... 22 3 7 0.14 1 0 1
......................................................................................GTCGTCGGTGGCGTTGTGG.................................................................................................................................................. 19 2 20 0.10 2 2 0
..................................................................................TTTCGTCGTCGGTAGTGTT...................................................................................................................................................... 19 2 16 0.06 1 1 0
...............................................................................CGGTGTCCACGTCGGTGGTGGT...................................................................................................................................................... 22 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:1004526-1004776 + dps_2964 CCCAGGTGCAGACCCT--GCAGGGGCATCAGATCATAGGCAACTTGAATCAGGTGAATATGACTGATTTCCAA-------CAACAGCAGCCACAGC------------------------------------------AGC------AGCCACC------------AC------------AA------CAGCAAAC---ACAACCCCAACAGACGCTCTGA-----------------------TCGG-ACAAGACCGAA------ACGTAGAATCTATT----------------------ATTAT-----AATCTGTTCT---ACTC-------------------TTATATAAACT-------GCTTGCGTAGCTCATTTCTAAACGAAGGGAAAGTCAAAACTGGCTCTCGATGGACGGCCAG
droPer2 scaffold_12:1683282-1683532 + CCCAGGTGCAGACCCT--GCAGGGGCATCAGATCATAGGCAACTTGAATCAGGTGAATATGACTGATTTCCAA-------CAACAGCAGCCACAGC------------------------------------------AGC------AGCCACC------------AC------------AA------CAGCAAAC---ACAACCCCAACAGACGCTCTGA-----------------------TCGG-ACAAGACCGAA------ACGTAGAATCTATT----------------------ATTAT-----AATCTGTTCT---ACTC-------------------GTATATAAACT-------GCTTGCGTAGCTCATTTCTAAACGAAGGGAAAGTCAAAACTGGCTCTCGATGGACGGCCAG
droWil2 scf2_1100000004949:1101288-1101456 + CCCAAGTACAGACCTT--GCAGGGCCATCAAATTATAGGCAATTTGAATCAGGTGAATATAACTGATTTCCAA-------CAGCAACAGCA------------------------------------------------------------------------GCAAC------------AA------CAGCAAACACAACCACCACAACAGACGCTTTGA-----------------------TTGG-A-----CCGAT------ATATAGA-TCCATTT-----ATT------------AAT---T-ATTTA----TTTCG---TTC----C-----CA--------------------------------------------------------------------------------------
droVir3 scaffold_13049:16840063-16840281 - dvi_20239 CCCAGGTGCAAACGTT--GCAGGGTCATCAGATAATTGGCAATTTGAATCAGGTGAATATGACTGATTTTCAA-------CAGCAACAACAATCACAACAACAAC---AGCAGCAGCAACAGCAGC------------AGC------AGCAACA------ACAACAAC------------AA------CAAACAAC---ACAACCACCACAGACGCTTTGAGTAGCACGTACAGCTCTGACGAATCGA-A-----CCGAA------TCATAGA-CCCCCTT-----TAT---------TATA----------------------------------------------------------------------------------------------------------------------------A
droMoj3 scaffold_6680:3964598-3964767 + CCAGCG---AGGAGCT--GCACAGCCATCTAA----------------------------------------A-------CAGCAACAGCAACAACAACAACAAC---AGCAACTGCAACCACAGC------------AGC------AACAACAACAACAACAACAAC------AACAACAA------T-------------------GCA------------------------------------------------------------GAGCTTGTT-GCATC----------------GACAT-----CGCCTGCCTT---GCCG-------------------CTATTT----T-------GTTTGGGCAGCTCATTTCCGCAC--------------------------------------
droGri2 scaffold_14906:4365109-4365261 - CTCAG---CAGATCCATATTACGGCCA-----------------------------------------CACAGCATCAGGCAGC-CCAACAGCAGCTGCAACAGC---AACAGCAGCAGCAGCACAA---------GCAACAACAGCAGCAACA------GCAACAGCAACAGCC----CTA------CACCGATC---------CCAATA--------------------------------------------CCATA------GATCAGTACCTATT----------------------GTCGT------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:4357795-4358083 + dan_2418 CCCAGGTTCAGACCCT--GCAGGGCCATCAGATCATAAGCAATTTGAATCAGGTGAATATGACTGATTTCCAG-------CAACAACAGCAACAGCAACAACAGC---AGCAACAGCAACAACAGCAACAACAACAGCAGC------AACAGCA------ACAACAGC------------AA------CAGCAAACACAACAACCACAACAGACGCTCTGA-----------------------TCAG-A-----CGGACA----AACGTAGC-TCCATTT-----TGTACTATTCTATTTAAT---T-TTTAA----TTTTT--G-CTTCTGC-----TAAAA-------------------ACGGATTGCGTAGAAAAATTCTAAATTAATGAT-----------------ACAAGT-----CAA
droBip1 scf7180000395450:486899-487195 + CCCAGGTTCAGACCCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGATTTCCAG-------CAACAACAACAACAGCAACAGCAGC---AACAACAGCAGCAACAGCAACAACAG---CAGC------AGCAACA------ACCACCACCAC---AACAACAA------CAGCAAAC---ACAACCACAACAGACGCTCTGA-----------------------TCAG-A-----CGGACG----AACATAGC-TCCATTT-----TTTAATATTCTA-----------ATTAA----TTTTT--A-ATTTTGC-----TAAACTGCTAAAAA------------GGATGGCGTAGAAAAATTCTAAATTAATAAT-----------------ACAAGTACAGCAGT
droKik1 scf7180000302383:891576-891843 - CCCAGGTGCAAACGCT--GCAGGGTCATCAGATCATAGGCAATATCAATCAGGTGAATATGACTGATTTCCAA-------CAGCAACAACAACAAC------------AGC---------------------------AGC------AGCA------------GCAAC------------AA------CAGCAAACACAACAACCACAACAGACGCTTTGA-----------------------TTGG-A-----CGGAAAAACGTAGTTAGA-TCCATTA-----TGTACTATT-------AT---T-ATT------TTTGG--A---TTTGCCAAACCAAAC-GCTTTAAGT-------------AATGCGTAGACCAATTCTAAATGAATTCT----TCAAATTAATTGAAGATACAAAAAAAA
droFic1 scf7180000453807:199973-200280 - CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATCTAAATCAGGTGAATATGACTGACTTCCAG-------CAACAACAACAACAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAGCAACAGCAGCAGC------AACAACA------ACAGCAGC------------AA------CAGCAAAC---ACAACCACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAA-----ACCTAGA-TCCAC------------TATTCAATATAAT---TAATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTAGATAAATTCTAAATTAATTTT--------------TTTAAAAAGCCAGCTAG
droEle1 scf7180000491199:1914622-1914891 - CCCAGGTGCAGACGCT--GCAGGGTCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAA-------CAACAACAACAGCAGCAGCAGCAGC---AACAACAGCAGCAACAGCAACAACAA---CAAC------AACAACA------GCAGCAGC------------AA------CAGCAAAC---ACAACCACAACAGACGCTCTGA-----------------------TCGG-A-----CCGCAA-----TCGTAGA-TCCACCA-----TGTACTATTCTATATAATTATT-GTTAA----TTTGG--G-TTTTTGC-----TAAGC-GCTTTAAATATTCTCTCGGCGGAATGC-------------------------------------------------------
droRho1 scf7180000777233:62545-62829 + CCCAAGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAA-------CAACAGCAGCAGCAGCAACAACAAC---AGCAACAACAACAACAAC---------------------AACAACA------GCAGCAGC------------AA------CAGCAAAC---ACAATCACAACAGACGCTCTGA-----------------------TCGG-A-----CCGTAA-----TCGTAGA-TCCACCA-----TATACTATTCTGTATAATTATT-ATTAA----TTTGG--G-TTTTTGC-----TTAAC-GCTTTAAATATTTTCCTTGCGGAATGCGTAGACAAATTCTAAATTAATT----------------------------GAAAG
droBia1 scf7180000302428:5139277-5139574 + CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAG-------CAGCAACAACAGCAGCAGCAGCAGC---AGCAGCAACAGCAGCAGCA------G---CAAC------AACAGCA------GCAGCAGC------------AA------CAGCAAAC---ACAACCACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-ACG-TACTAGA-TCCACTA-----TGTACTATTCTATATAGC---T-ATTAG----TTTTG--G-T-TTTGC-----TAAAC-GCTTTAAATATCCTTCTCGCCGAATGCGTAGACAATTTCTAAATTAATTTT-----------------AA-AAGCCGC--AA
droTak1 scf7180000415135:455310-455566 - CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAG-------CAACAACAGCAGCAGCAGCAACAGC---AACAACAGCAGCAGCAGC---------------------AACAACA------ACAGCAGC------------AA------CAGCAAAC---ACAATCACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----ACGTAGA-TCCACTA-----TGTACTATTCTATATAAT---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTGATTATTCTTCTCGCTGAATGCGT-----------------------------------------------------
droEug1 scf7180000409456:993511-993800 - CCCAGGTTCAGACGCT--GCAGGGTCATCAGATCATAGGCAATATAAATCAGGTGAATATGACTGACTTCCAG-------CAACAACAACAGCAGCAGCAGCAAC---AACAACAACAGCAGCAGCAACAACAACAGCAGC------AGCAGCA------ACAACAGC------------AA------CAGCAAAC---------ACAACAGACGCTTTGA-----------------------ACGGGA-----CCGAAC-----ACACAAT-TC----------TATATAGTTCTATATAAT---A-ATTAA----TTTTTGGGTTTTTTGC-----TAAAC-GCTTTAAATATTCTCCTCGCACTGTGCGTAGACAAATTCTAAATTAATTTT-----------------AAA-----------
dm3 chr3L:14744127-14744416 - CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATAACTGACTTTCAA-------CAACAACAACCGCAGCAGCAACAAC---AGCAGCAGCAACAACA---------G---CAGC------AACAACA------ACAACAGC------------AA------CAGCAAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCTTAGA-TCCATCT-----TGTACTATTCTATACAAT---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTAGACAAATTCTAAATTAGTTTT-----------------AGAAAGCCAGAAAG
droSim2 3l:14393135-14393445 - dsi_13813 CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTTCAA-------CAACAACAACAGCAGCAACAGCAGC---AGCAGCAGCAACAACAGCAGCAGCAGCAGC---------AACAACA------ACAACAAC------AACAACAACCGCAACAGCAAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCATAGA-TCCACCT-----TGTACTATTCTATACGAT---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTAGACGAATTCTAAATTAGTTTT-----------------AGAAAGCCAGAAAG
droSec2 scaffold_0:6865110-6865408 - dse_452 CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTTCAA-------CAACAACAACAGCAGCAACAGCAAC---AGCAGCAGCAGCAACAACAGCAGCAG---CAGC------AGCAACA------ACAACCGC------------AA------CAGCAAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCATAGA-TCCACCT-----TGTACTATTCTATACGAT---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTAGACGAATTCTAAATTAGTTTT-----------------AGAAAGCCAGAAAG
droYak3 3L:14831265-14831563 - dya_798 CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATTGGCAATTTGAATCAGGTGAATATGACTGACTTTCAA-------CAACAACAGCAACAGCAGCAGCAGC---AGCAACAACAGCAGCAGCAACAGCAG---CAGC------AACAACA------ACAGCAGC------------AA------CAGCAAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCTTAGA-TCCACCT-----TGTACTATTCTATACAAA---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTAGACGAATTCTAAATTAGTTTT-----------------AGAAAGCCCGAAAG
droEre2 scaffold_4784:14710619-14710876 - der_815 CTCAGGTGCAGACGCT--GCAGGGCCATCAGATCATCGGCAATTTGAATCAGGTGAATATGACTGACTTTCAA-------CAACAACAGCAGCAGCAACAGCAAC---AACAACAGCAGCAGCAAC------AG---CAGC------AGCAACA------ACAGCAGC------------AA------CAGCAAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCTTAGA-TCCACCT-----TGTACTATTCTATACAAA---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTA----------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCCAGGTGCAGACCCT--GCAGGGGCATCAGATCATAGGCAACTTGAATCAGGTGAATATGACTGATTTCCAA-------CAACAGCAGCCACAGC------------------------------------------AGC------AGCCACC------------AC------------AA------CAGCAAAC---ACAACCCCAACAGACGCTCTGA-----------------------TCGG-ACAAGACCGAA------ACGTAGAATCTATT----------------------ATTAT-----AATCTGTTCT---ACTC-------------------TTATATAAACT-------GCTTGCGTAGCTCATTTCTAAACGAAGGGAAAGTCAAAACTGGCTCTCGATGGACGGCCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................CTAAACGAAGGGAAAGTCAAAACTG...................2511.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................CGTAGCTCATTTCTAAACGAAGGGAA..............................2611.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGCTCTCGATGGAC......1911.0010010000000
.........AGACCCT--GCAGGGGCATCAGATCATAGGC...................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000001000
.........................................................................................................................................................C------------AC------------AA------CAGCAAAC---ACAACCCCAAC.........................................................................................................................................................................................................................2411.0010010000000
..........................................CTTGAATCAGGTGAATATGACTG..........................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
.....................GGGGCATCAGATCATAGGCAA.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..........................ATCAGATCATAGGCAACTTGAATCAGGT.....................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
...........................................................................................................................................................................................................................................................AAGACCGAA------ACGTAGAATCT......................................................................................................................................................2011.0010100000000
..................GCAGGGGCATCAGATCATAGGCAA.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
...............................................................................................................................................................................................................................................................................................................................................................................................................TCAAAACTGGCTCTCGATGGACGG....2411.0010100000000
...................CAGGGGCATCAGATCATAGGC...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010000
...................................................................................................................................................................................................................GACGCTCTGA-----------------------TCGG-ACAAGACCGAA------AC...............................................................................................................................................................2711.0010001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTGGCTCTCGATGGAC......2011.0010000100000
....................................................................................................................................................................................................................ACGCTCTGA-----------------------TCGG-ACAAGACC..........................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................AC---ACAACCCCAACAGACGCTCT................................................................................................................................................................................................................2211.0010010000000
..........................................CTTGAATCAGGTGAATATGACTGATTTC.....................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
...............................................................................................................................................................................................................AACAGACGCTCTGA-----------------------TCGG-AC................................................................................................................................................................................2011.0010000010000
...............................................................................................................................................................................................................AACAGACGCTCTGA-----------------------TCGG-A.................................................................................................................................................................................1911.0010000000001
droPer2
CCCAGGTGCAGACCCT--GCAGGGGCATCAGATCATAGGCAACTTGAATCAGGTGAATATGACTGATTTCCAA-------CAACAGCAGCCACAGC------------------------------------------AGC------AGCCACC------------AC------------AA------CAGCAAAC---ACAACCCCAACAGACGCTCTGA-----------------------TCGG-ACAAGACCGAA------ACGTAGAATCTATT----------------------ATTAT-----AATCTGTTCT---ACTC-------------------GTATATAAACT-------GCTTGCGTAGCTCATTTCTAAACGAAGGGAAAGTCAAAACTGGCTCTCGATGGACGGCCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................CTTGAATCAGGTGAATATGACTGA.........................................................................................................................................................................................................................................................................................................................................................................2412.002200000
..........................................CTTGAATCAGGTGAATATGACT...........................................................................................................................................................................................................................................................................................................................................................................2212.002200000
.....................GGGGCATCAGATCATAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................AACCCCAACAGACGCTCTGA-----------------------TCGG-AC................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGGAAAGTCAAAACT....................1911.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGAAAGTCAAAACTGGCTCT..............2411.001000001
........................................................................A-------CAACAGCAGCCACAGC------------------------------------------AGC------AGCCA...................................................................................................................................................................................................................................................................................2511.001010000
...............................................................................................................................................................................................................................................................................................................................................................TATAAACT-------GCTTGCGTAGCTCA...............................................2211.001001000
droWil2
CCCAAGTACAGACCTT--GCAGGGCCATCAAATTATAGGCAATTTGAATCAGGTGAATATAACTGATTTCCAA-------CAGCAACAGCA------------------------------------------------------------------------GCAAC------------AA------CAGCAAACACAACCACCACAACAGACGCTTTGA-----------------------TTGG-A-----CCGAT------ATATAGA-TCCATTT-----ATT------------AAT---T-ATTTA----TTTCG---TTC----C-----CA--------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..CAAGTACAGACCTT--GCAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................2112.00202000
........................................AATTTGAATCAGGTGAATATAACT...........................................................................................................................................................................................................................................................................................................................................................................2412.00200020
...............................ATTATAGGCAATTTGAAT..........................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
........................................................................................................................................................................................................................TTTGA-----------------------TTGG-A-----CCGAT------ATATAGA-TC.......................................................................................................................................................2411.00100010
....................AGGGCCATCAAATTATAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
.......................................................................................................................................................................................................................................................G-A-----CCGAT------ATATAGA-TCCATT...................................................................................................................................................2011.00100010
.................................................................................................................................................................................................................CAGACGCTTTGA-----------------------TTGG-A-----CC..........................................................................................................................................................................1911.00110000
...............................................................................................................................................................................................................AACAGACGCTTTGA-----------------------TTGG-A-----CC..........................................................................................................................................................................2111.00101000
......................................................................................................................................................................................................AACCACCACAACAGACGCTTTGA-----------------------TTG....................................................................................................................................................................................2611.00100010
...............................................................................................................................................................................................................AACAGACGCTTTGA-----------------------TTGG-A-----C...........................................................................................................................................................................2011.00100010
............................................................................................................................................................................................................CACAACAGACGCTTTGA-----------------------TTG....................................................................................................................................................................................2011.00100010
................................................................................................................................................................................................................ACAGACGCTTTGA-----------------------TTGG-A-----C...........................................................................................................................................................................1911.00110000
..............................AATTATAGGCAATTTGAATCAGGT.....................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.............................................................................................................................................................................................................ACAACAGACGCTTTGA-----------------------TTGG-A-----C...........................................................................................................................................................................2211.00100010
...................................................................................................................................................................................................................GACGCTTTGA-----------------------TTGG-A-----CCGAT------ATATAGA-.........................................................................................................................................................2711.00101000
.............................................................................................................................................................................................................ACAACAGACGCTTTGA-----------------------TT.....................................................................................................................................................................................1811.00100010
..CAAGTACAGACCTT--GCAGGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.....GTACAGACCTT--GCAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.......................................................................................................................................................................C------------AA------CAGCAAACACAACCACCACAACAGA......................................................................................................................................................................................................................2811.00100010
....................................................................................AACAGCA------------------------------------------------------------------------GCAAC------------AA------CAGCA..........................................................................................................................................................................................................................................19200.05100010
droVir3
CCCAGGTGCAAACGTT--GCAGGGTCATCAGATAATTGGCAATTTGAATCAGGTGAATATGACTGATTTTCAA-------CAGCAACAACAATCACAACAACAAC---AGCAGCAGCAACAGCAGC------------AGC------AGCAACA------ACAACAAC------------AA------CAAACAAC---ACAACCACCACAGACGCTTTGAGTAGCACGTACAGCTCTGACGAATCGA-A-----CCGAA------TCATAGA-CCCCCTT-----TAT---------TATA----------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................TACAGCTCTGACGAATCGA-A-----C...........................................................................................................................................................................2113.003000000000000000000000001001000000000000000000000000000000000010
.................................................................................................................................................................................................................CAGACGCTTTGAGTAGCACGT.....................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000110
................................................................................................................................................................................................................ACAGACGCTTTGAGTAGCACG......................................................................................................................................................................................................2112.002000000000000000001010000000000000000000000000000000000000000000
.........AAACGTT--GCAGGGTCATC..............................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000002000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CAAACAAC---ACAACCACCACAG.......................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GACGAATCGA-A-----CCGAA------TCA..............................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
............................................TGAATCAGGTGAATATGACTGA.........................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
..CAGGTGCAAACGTT--GCAGGGTCA................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
..................................ATTGGCAATTTGAATCAGGTGAATAT...............................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...................................................................TTTCAA-------CAGCAACAACAATCACAAC........................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................AGCTCTGACGAATCGA-A-----CCGA........................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
....GGTGCAAACGTT--GCAGGGTCC................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
...................................................GGTGAATATGACTGATTTTC....................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TAGCACGTACAGCTCTGACGA........................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................C---ACAACCACCACAGACGCTTTGA..............................................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................GTAGCACGTACAGCTCTGACG.........................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.....GTGCAAACGTT--GCAGGGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..................GCAGGGTCATCAGATAATTGG....................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
..........................ATCAGATAATTGGCAATTTGAATC.........................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................ATCACAACAACAAC---AGCAGCAGC......................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
....................AGGGTCATCAGATAATTGGCAAT................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................AA-------CAGCAACAACAATCACAACAACA....................................................................................................................................................................................................................................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAATCACAACAACAAC---AGCAG..........................................................................................................................................................................................................................................................................................................................2140.251001000000000000000000000000000000000000000000000000000000000000
..........................................................................................AATCACAACAACAAC---AGCAGC.........................................................................................................................................................................................................................................................................................................................2140.251000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................ACA------ACAACAAC------------AA------CAAACAAC---A...................................................................................................................................................................................................................................22200.102002000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AGCAACAGCAGC------------AGC------AGCAACA------...........................................................................................................................................................................................................................................................................22200.102000000000000000000000000002000000000000000000000000000000000000
.......................................................................................................AC---AGCAGCAGCAACAGCAGC------------A................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................CACAACAACAAC---AGCAGCAGC......................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................AGCAGCAACAGCAGC------------AGC------AGCA....................................................................................................................................................................................................................................................................................22200.051000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................GCAGC------------AGC------AGCAACA------ACAACAAC------------AA------C..............................................................................................................................................................................................................................................26200.051000000000000000000000000000000000001000000000000000000000000000
.................................................................................................ACAACAAC---AGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................CACAACAACAAC---AGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AGCAGC------------AGC------AGCAACA------ACAACAAC------------.......................................................................................................................................................................................................................................................24200.051000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................CAAC---AGCAGCAGCAACAGCAGC------------AG...............................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................AACAAC---AGCAGCAGCAACAGCA...............................................................................................................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................AGC------------AGC------AGCAACA------ACAACAAC------------AA------C..............................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
...............................................................................................CAACAACAAC---AGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................20200.051000000000000010000000000000000000000000000000000000000000000000
droMoj3
CCAGCG---AGGAGCT--GCACAGCCATCTAA----------------------------------------A-------CAGCAACAGCAACAACAACAACAAC---AGCAACTGCAACCACAGC------------AGC------AACAACAACAACAACAACAAC------AACAACAA------T-------------------GCA------------------------------------------------------------GAGCTTGTT-GCATC----------------GACAT-----CGCCTGCCTT---GCCG-------------------CTATTT----T-------GTTTGGGCAGCTCATTTCCGCAC--------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................ACAAC---AGCAACTGCAACCACAGC------------AGC------A.......................................................................................................................................................................................................................................................................................2711.001000010
..................................................................................................CAACAAC---AGCAACTGCAACCAC................................................................................................................................................................................................................................................................................................................2211.001000010
...........................................................................................................................................GC------AACAACAACAACAACAACA.....................................................................................................................................................................................................................................................................21200.102200000
..............................AA----------------------------------------A-------CAGCAACAGCAACAACAA.........................................................................................................................................................................................................................................................................................................................................21200.051100000
.............................................................................................AACAACAACAAC---AGCAACTGC......................................................................................................................................................................................................................................................................................................................21200.051100000
droGri2
CTCAG---CAGATCCATATTACGGCCA-----------------------------------------CACAGCATCAGGCAGC-CCAACAGCAGCTGCAACAGC---AACAGCAGCAGCAGCACAA---------GCAACAACAGCAGCAACA------GCAACAGCAACAGCC----CTA------CACCGATC---------CCAATA--------------------------------------------CCATA------GATCAGTACCTATT----------------------GTCGT------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................GCAACAACAGCAGCAACA------GCAACAGC...................................................................................................................................................................................................................................................................26150.07110
..................................................................................................CAACAGC---AACAGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................23200.05110
droAna3
CCCAGGTTCAGACCCT--GCAGGGCCATCAGATCATAAGCAATTTGAATCAGGTGAATATGACTGATTTCCAG-------CAACAACAGCAACAGCAACAACAGC---AGCAACAGCAACAACAGCAACAACAACAGCAGC------AACAGCA------ACAACAGC------------AA------CAGCAAACACAACAACCACAACAGACGCTCTGA-----------------------TCAG-A-----CGGACA----AACGTAGC-TCCATTT-----TGTACTATTCTATTTAAT---T-TTTAA----TTTTT--G-CTTCTGC-----TAAAA-------------------ACGGATTGCGTAGAAAAATTCTAAATTAATGAT-----------------ACAAGT-----CAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................CA----AACGTAGC-TCCATTT-----TGTACTATTCTA.................................................................................................................................2911.001100000
...............................................................................................................AACAGCAACAACAGCAACAACAACAG..................................................................................................................................................................................................................................................................................................2611.001010000
.................................................................ATTTCCAG-------CAACAACAGCAACA.............................................................................................................................................................................................................................................................................................................................................2211.001010000
...................................................................................................................................................................................................................................................................CA----AACGTAGC-TCCATTT-----TGT..........................................................................................................................................2011.001010000
.........................................ATTTGAATCAGGTGAATATGACT...........................................................................................................................................................................................................................................................................................................................................................................2311.001010000
........................................................ATATGACTGATTTCCAG-------CAACAAC....................................................................................................................................................................................................................................................................................................................................................2411.001010000
............................................................................................................................................................................................................................A-----------------------TCAG-A-----CGGACA----AACGTAGC-TC.......................................................................................................................................................2211.001010000
..........................................................................................................................................................................................................................................................................................................................................CTGC-----TAAAA-------------------ACGGATTGCGT.....................................................2011.001000010
.....GTTCAGACCCT--GCAGGGCCATC..............................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..........................................................................................................................................................................................................................................................................................................................................CTGC-----TAAAA-------------------ACGGATTGCGTA....................................................2111.001000010
........................................................................................................................................................CA------ACAACAGC------------AA------CAGCAAACAC.....................................................................................................................................................................................................................................2211.001010000
.................................................................................................................................................................................................................CAGACGCTCTGA-----------------------TCAG-A-----CGGACA----..................................................................................................................................................................2311.001000010
..........................................................................................................................................................................................................ACCACAACAGACGCTCTGA-----------------------TCAG-A-----CGGAC.......................................................................................................................................................................2911.001010000
......................GGCCATCAGATCATAAGCA..................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
................................................................................................................................................................................................................ACAGACGCTCTGA-----------------------TCAG-A-----CGGAC.......................................................................................................................................................................2311.001000001
...............................................................................................................................................................................................................AACAGACGCTCTGA-----------------------TCAG-A-----CG..........................................................................................................................................................................2111.001001000
.................................................................................................................................................................................................................CAGACGCTCTGA-----------------------TCAG-A-----CGGACA----AACG..............................................................................................................................................................2711.001000010
.................................................................................................................................................................................................AACACAACAACCACAACAGACGCTC.................................................................................................................................................................................................................2511.001100000
....................................................................................................................................................................................AA------CAGCAAACACAACAACCAC............................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................GCAAACACAACAACCACAACAGACGCT..................................................................................................................................................................................................................2711.001010000
....................................................................................AACAGCAACAGCAACAACAGC---AGCAAC.........................................................................................................................................................................................................................................................................................................................2720.501010000
.....................................................................................................................AACAACAGCAACAACAACAGCAGC------AAC.....................................................................................................................................................................................................................................................................................2740.251100000
................................................................................................AACAACAGC---AGCAACAGCAACAACAGC.............................................................................................................................................................................................................................................................................................................2760.171010000
.......................................................................................................................................AGCAGC------AACAGCA------ACAACAGC------------AA------CAG............................................................................................................................................................................................................................................2660.171010000
.....................................................................................................................AACAACAGCAACAACAACAGCAGC------........................................................................................................................................................................................................................................................................................2460.171010000
.................................................................................................................................AACAACAGCAGC------AACAGCA------ACAACAGC------------.......................................................................................................................................................................................................................................................2760.171010000
..........................................................................................................................................AGC------AACAGCA------ACAACAGC------------AA------CAGCA..........................................................................................................................................................................................................................................2570.141010000
................................................................................................................................CAACAACAGCAGC------AACAGCA------ACAACA.....................................................................................................................................................................................................................................................................2690.111100000
...............................................................................................CAACAACAGC---AGCAACAGCAACAACA...............................................................................................................................................................................................................................................................................................................2690.111100000
....................................................................................................................CAACAACAGCAACAACAACAGC.................................................................................................................................................................................................................................................................................................22130.081010000
....................................................................................AACAGCAACAGCAACAACAGC---...............................................................................................................................................................................................................................................................................................................................21170.061010000
.............................................................................................................................CAACAACAACAGCAGC------AACAGC..................................................................................................................................................................................................................................................................................22170.061010000
....................................................................................................................................AACAGCAGC------AACAGCA------ACAACA.....................................................................................................................................................................................................................................................................22180.061010000
...................................................................................................AACAGC---AGCAACAGCAACAACA...............................................................................................................................................................................................................................................................................................................22180.061010000
...............................................................................................................................ACAACAACAGCAGC------AACAGCA------...........................................................................................................................................................................................................................................................................21180.061010000
......................................................................................................AGC---AGCAACAGCAACAACAGC.............................................................................................................................................................................................................................................................................................................21200.051010000
....................................................................................................................................AACAGCAGC------AACAGCA------ACAA.......................................................................................................................................................................................................................................................................20200.051010000
..............................................................................................GCAACAACAGC---AGCAACAGC......................................................................................................................................................................................................................................................................................................................20200.051100000
...............................................................................................CAACAACAGC---AGCAACAGCA.....................................................................................................................................................................................................................................................................................................................20200.051010000
...................................................................................................................................CAACAGCAGC------AACAGCA------ACAAC......................................................................................................................................................................................................................................................................22200.051010000
............................................................................................CAGCAACAACAGC---AGCAAC.........................................................................................................................................................................................................................................................................................................................19200.051010000
..................................................................................................CAACAGC---AGCAACAGCAACAAC................................................................................................................................................................................................................................................................................................................22200.051010000
.......................................................................................................................................AGCAGC------AACAGCA------ACAACAGC------------.......................................................................................................................................................................................................................................................21200.051010000
.............................................................................................................................CAACAACAACAGCAGC------AAC.....................................................................................................................................................................................................................................................................................19200.051000001
...................................................................................................AACAGC---AGCAACAGCAACAA.................................................................................................................................................................................................................................................................................................................20200.051010000
droBip1
CCCAGGTTCAGACCCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGATTTCCAG-------CAACAACAACAACAGCAACAGCAGC---AACAACAGCAGCAACAGCAACAACAG---CAGC------AGCAACA------ACCACCACCAC---AACAACAA------CAGCAAAC---ACAACCACAACAGACGCTCTGA-----------------------TCAG-A-----CGGACG----AACATAGC-TCCATTT-----TTTAATATTCTA-----------ATTAA----TTTTT--A-ATTTTGC-----TAAACTGCTAAAAA------------GGATGGCGTAGAAAAATTCTAAATTAATAAT-----------------ACAAGTACAGCAGTSizeHit CountTotal NormTotal
No Reads
droKik1
CCCAGGTGCAAACGCT--GCAGGGTCATCAGATCATAGGCAATATCAATCAGGTGAATATGACTGATTTCCAA-------CAGCAACAACAACAAC------------AGC---------------------------AGC------AGCA------------GCAAC------------AA------CAGCAAACACAACAACCACAACAGACGCTTTGA-----------------------TTGG-A-----CGGAAAAACGTAGTTAGA-TCCATTA-----TGTACTATT-------AT---T-ATT------TTTGG--A---TTTGCCAAACCAAAC-GCTTTAAGT-------------AATGCGTAGACCAATTCTAAATGAATTCT----TCAAATTAATTGAAGATACAAAAAAAASizeHit CountTotal NormTotal
No Reads
droFic1
CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATCTAAATCAGGTGAATATGACTGACTTCCAG-------CAACAACAACAACAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAGCAACAGCAGCAGC------AACAACA------ACAGCAGC------------AA------CAGCAAAC---ACAACCACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAA-----ACCTAGA-TCCAC------------TATTCAATATAAT---TAATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTAGATAAATTCTAAATTAATTTT--------------TTTAAAAAGCCAGCTAGSizeHit CountTotal NormTotal
No Reads
droEle1
CCCAGGTGCAGACGCT--GCAGGGTCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAA-------CAACAACAACAGCAGCAGCAGCAGC---AACAACAGCAGCAACAGCAACAACAA---CAAC------AACAACA------GCAGCAGC------------AA------CAGCAAAC---ACAACCACAACAGACGCTCTGA-----------------------TCGG-A-----CCGCAA-----TCGTAGA-TCCACCA-----TGTACTATTCTATATAATTATT-GTTAA----TTTGG--G-TTTTTGC-----TAAGC-GCTTTAAATATTCTCTCGGCGGAATGC-------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CCCAAGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAA-------CAACAGCAGCAGCAGCAACAACAAC---AGCAACAACAACAACAAC---------------------AACAACA------GCAGCAGC------------AA------CAGCAAAC---ACAATCACAACAGACGCTCTGA-----------------------TCGG-A-----CCGTAA-----TCGTAGA-TCCACCA-----TATACTATTCTGTATAATTATT-ATTAA----TTTGG--G-TTTTTGC-----TTAAC-GCTTTAAATATTTTCCTTGCGGAATGCGTAGACAAATTCTAAATTAATT----------------------------GAAAGSizeHit CountTotal NormTotal
No Reads
droBia1
CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAG-------CAGCAACAACAGCAGCAGCAGCAGC---AGCAGCAACAGCAGCAGCA------G---CAAC------AACAGCA------GCAGCAGC------------AA------CAGCAAAC---ACAACCACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-ACG-TACTAGA-TCCACTA-----TGTACTATTCTATATAGC---T-ATTAG----TTTTG--G-T-TTTGC-----TAAAC-GCTTTAAATATCCTTCTCGCCGAATGCGTAGACAATTTCTAAATTAATTTT-----------------AA-AAGCCGC--AASizeHit CountTotal NormTotal
No Reads
droTak1
CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAG-------CAACAACAGCAGCAGCAGCAACAGC---AACAACAGCAGCAGCAGC---------------------AACAACA------ACAGCAGC------------AA------CAGCAAAC---ACAATCACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----ACGTAGA-TCCACTA-----TGTACTATTCTATATAAT---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTGATTATTCTTCTCGCTGAATGCGT-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CCCAGGTTCAGACGCT--GCAGGGTCATCAGATCATAGGCAATATAAATCAGGTGAATATGACTGACTTCCAG-------CAACAACAACAGCAGCAGCAGCAAC---AACAACAACAGCAGCAGCAACAACAACAGCAGC------AGCAGCA------ACAACAGC------------AA------CAGCAAAC---------ACAACAGACGCTTTGA-----------------------ACGGGA-----CCGAAC-----ACACAAT-TC----------TATATAGTTCTATATAAT---A-ATTAA----TTTTTGGGTTTTTTGC-----TAAAC-GCTTTAAATATTCTCCTCGCACTGTGCGTAGACAAATTCTAAATTAATTTT-----------------AAA-----------SizeHit CountTotal NormTotal
No Reads
dm3
CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATAACTGACTTTCAA-------CAACAACAACCGCAGCAGCAACAAC---AGCAGCAGCAACAACA---------G---CAGC------AACAACA------ACAACAGC------------AA------CAGCAAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCTTAGA-TCCATCT-----TGTACTATTCTATACAAT---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTAGACAAATTCTAAATTAGTTTT-----------------AGAAAGCCAGAAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
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Ovary		V064
Ovary		V0642
Ovary		V065
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Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
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Embryo		V083
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Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.CCAGGTGCAGACGCT--GCAGGGCCAT...............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CAACAGACGCTCTGA-----------------------TCGG-A-----CC..........................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................AGATCATAGGCAATTTAAATCAGGT.....................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CGGAATGCGTAGACAAATTC...........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................AC---------ACAACAGACGCTCTGA-----------------------TCGG-..................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAGATCATAGGCAATTTAAATC.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................G-----TCTTAGA-TCCATCT-----TGTACTATTCTA.................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TCT-----TGTACTATTCTATACAAT---T-ATTAA----T............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TTAAATATTCTCTTTGCGGA...........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..CAGGTGCAGACGCT--GCAGGGCCATC..............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ATTCTCTTTGCGGAATGCGTAGACAA...............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TTAGA-TCCATCT-----TGTACTATTCTATAG..............................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GCGGAATGCGTAGACAAATTCTAAA.......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CAGC------------AA------CAGCAAAC---------ACAACAGACGC...................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TTTTGC-----TAAAC-GCTTTAAATATTCTCTT.................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................ACGCTCTGA-----------------------TCGG-A-----CCGAAG-----.................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGCGGAATGCGTAGACAAAA.............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCAGACGCT--GCAGGGCCATCAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................ACAGC------------AA------CAGCAAAC---------ACAACAGACGC...................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTGCGGAATGCGTAGACAA...............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................C---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CC..........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................CTCTGA-----------------------TCGG-A-----CCGAAG-----T................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GACGCTCTGA-----------------------TCGG-A-----CCGAA.......................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CATCT-----TGTACTATTCTATACA.............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................A-------CAACAACAACCGCAGCAGC........................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................ACCGCAGCAGCAACAAC---AGCAGCAGC......................................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................CAA-------CAACAACAACCGCAGCA..........................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................A---------G---CAGC------AACAACA------ACAACAGC------------AA------CA.............................................................................................................................................................................................................................................2560.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTTCAA-------CAACAACAACAGCAGCAACAGCAGC---AGCAGCAGCAACAACAGCAGCAGCAGCAGC---------AACAACA------ACAACAAC------AACAACAACCGCAACAGCAAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCATAGA-TCCACCT-----TGTACTATTCTATACGAT---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTAGACGAATTCTAAATTAGTTTT-----------------AGAAAGCCAGAAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................TTTGCGGAATGCGTAGACGAATTC...........................................2418.00800000033100010000
...................................................................................CAACAACAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................20202.7054000054000000000000
..................................................................................................................................................................................................................AGACGCTCTGA-----------------------TCGG-A-----CC..........................................................................................................................................................................1812.00200200000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGCGGAATGCGTAGACGAATTCTAAATT.....................................2812.00200000010010000000
.................................................................................................................................................................................................................................................................................................................................................................................TGCGTAGACGAATTCTAAATTAGTT.................................2512.00200000020000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTCTAAATTAGTTTT-----------------AGAAAGCCAGA...2611.00100000001000000000
..............................................................................................................................................................................................................CAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----T................................................................................................................................................................2711.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GCGGAATGCGTAGACGAATTCTAA........................................2411.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................ATTCTCTTTGCGGAATGCGTAGACGA...............................................2611.00100010000000000000
..............................................AATCAGGTGAATATGACTGACTTTCAA-------C..........................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................ATTCTCTTTGCGGAATGC.......................................................1811.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................ATTCTCTTTGCGGAATGCGTAGACGAA..............................................2711.00101000000000000000
.............................................................................................................................................................................................................ACAACAGACGCTCTGA-----------------------TC.....................................................................................................................................................................................1811.00110000000000000000
.........................................................................................................................................................................................................................CTGA-----------------------TCGG-A-----CCGAAG-----TCATAGA-TCCACC...................................................................................................................................................2811.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTTT-----------------AGAAAGCCAGAA..2011.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................TCTTTGCGGAATGCGTAGACGA...............................................2211.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................ATTCTCTTTGCGGAATGCGT.....................................................2011.00100010000000000000
...................................................................................................................................................................................................................GACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCATA............................................................................................................................................................2611.00100000000000010000
........................................................................................................................................................................................................................TCTGA-----------------------TCGG-A-----CCGAAG-----TCATAGA-TCCA.....................................................................................................................................................2711.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................TGCGGAATGCGTAGACGAA..............................................1911.00100000000001000000
................................................................................................................................................................................................AAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CC..........................................................................................................................................................................2711.00101000000000000000
..............................................................................................................................................................................................................CAACAGACGCTCTGA-----------------------TCGG-G-----............................................................................................................................................................................2011.00101000000000000000
............................................................................................................................................................................................................................A-----------------------TCGG-A-----CCGAAG-----TCATAGA-T........................................................................................................................................................2011.00100100000000000000
.................................................................................................................................................................................................AAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CC..........................................................................................................................................................................2611.00110000000000000000
.........................................................................................................................................................................................................................CTGA-----------------------TCGG-A-----CCGAAG-----TCATA............................................................................................................................................................2011.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTTGCGGAATGCGTAGACGAATTCTAAA.......................................2811.00100000001000000000
...........................TCAGATCATAGGCAATTTAAATCAGGTGAA..................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTGCGGAATGCGTAGACGAATT............................................2211.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................TTTAAATATTCTCTTTGCGG............................................................2011.00100000000001000000
........................................................................................................................................................................................................................TCTGA-----------------------TCGG-A-----CCGAAG-----TCATAG...........................................................................................................................................................2211.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................TCTCTTTGCGGAATGCGTAGACGA...............................................2411.00101000000000000000
...............................................ATCAGGTGAATATGACTGACTTTCAA-------CAA........................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
...................................................................................CAACAACAGCAGCAACAGCAGC---AG.............................................................................................................................................................................................................................................................................................................................24100.10100000000000100000
....................................................................................AACAACAGCAGCAACAGCAGC---A..............................................................................................................................................................................................................................................................................................................................22120.08100000000000100000
....................................................................................................................CAACAACAGCAGCAGCAGCAGC---------........................................................................................................................................................................................................................................................................................22200.05100000000000100000
droSec2
CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTTCAA-------CAACAACAACAGCAGCAACAGCAAC---AGCAGCAGCAGCAACAACAGCAGCAG---CAGC------AGCAACA------ACAACCGC------------AA------CAGCAAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCATAGA-TCCACCT-----TGTACTATTCTATACGAT---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTAGACGAATTCTAAATTAGTTTT-----------------AGAAAGCCAGAAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................AGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----T................................................................................................................................................................2311.0010010
.........................................................................................................................................................................................................................................................................................................ATACGAT---T-ATTAA----TTTGG--G-T...................................................................................................2011.0010010
.....................................................................................................................................................................................................................................................................................................................................................................CTCTTTGCGGAATGCGTAGACGA...............................................2311.0010010
..............................................................................................................................................................................................................CAACAGACGCTCTGA-----------------------TCGG-A-----CCGA........................................................................................................................................................................2411.0010100
....................................................................................................................................................................................................................................................................................................ATTCTATACGAT---T-ATTAA----TTTGG--G-T...................................................................................................2511.0011000
..........................................................................................................................................................................................................................................................................TCATAGA-TCCACCT-----TGTACTATT....................................................................................................................................2311.0011000
......................................................GAATATGACTGACTTTCAA-------CAACAACA...................................................................................................................................................................................................................................................................................................................................................2711.0011000
.............................................................................................................................................................................................AGCAAAC---------ACAACAGACGCTCTGA-----------------------TCG....................................................................................................................................................................................2611.0010100
...............................................................................................................................................................................................................................................................................................................................................................................AATGCGTAGACGAATTCTAA........................................2011.0011000
..........................................................................................................................................................................................................................................................................................................................................................................TGCGGAATGCGTAGACGAATTCTAAATT.....................................2811.0011000
......................................................................CAA-------CAACAACAACAGCAGCAAC........................................................................................................................................................................................................................................................................................................................................22120.0810100
........................................................................................................................AACAACAGCAGCAG---CAGC------A.......................................................................................................................................................................................................................................................................................19200.0510010
.................................................................................................ACAGCAAC---AGCAGCAGCAGCAACA...............................................................................................................................................................................................................................................................................................................24200.0510010
.......................................................................................................................CAACAACAGCAGCAG---CAGC------A.......................................................................................................................................................................................................................................................................................20200.0510010
.........................................................................................................................ACAACAGCAGCAG---CAGC------AGCA....................................................................................................................................................................................................................................................................................21200.0510010
.......................................................................................................AC---AGCAGCAGCAGCAACAAC.............................................................................................................................................................................................................................................................................................................20200.0510010
droYak3
CCCAGGTGCAGACGCT--GCAGGGCCATCAGATCATTGGCAATTTGAATCAGGTGAATATGACTGACTTTCAA-------CAACAACAGCAACAGCAGCAGCAGC---AGCAACAACAGCAGCAGCAACAGCAG---CAGC------AACAACA------ACAGCAGC------------AA------CAGCAAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCTTAGA-TCCACCT-----TGTACTATTCTATACAAA---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTAGACGAATTCTAAATTAGTTTT-----------------AGAAAGCCCGAAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................AACAACA------ACAGCAGC------------AA------CAGCAAAC---------A.............................................................................................................................................................................................................................2611.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................TTTGCGGAATGCGTAGACG................................................1911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................TTTGCGGAATGCGTAGACGAATTCT..........................................2511.00100000010000
.........................CATCAGATCATTGGCAATTT..............................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................A---T-ATTAA----TTTGG--G-TTTTTGC-----T.......................................................................................2111.00100000010000
...............................................................................................................................................................................................................AACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----T................................................................................................................................................................2611.00100000010000
..............................................................................................................................................................................................GCAAAC---------ACAACAGACGCTCTGA-----------------------TC.....................................................................................................................................................................................2411.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................................TGCGTAGACGAATTCTAAATTAGTTT................................2611.00100100000000
.................................................................................................................................................................................................AAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----C...........................................................................................................................................................................2511.00100001000000
..............................................................................................................................................................................................................................................................................................................................................................AAATATTCTCTTTGCGGAATGCGTA....................................................2511.00100000010000
.........................................................................................................................................................................................................................CTGA-----------------------TCGG-A-----CCGAAG-----TCTTAGA-T........................................................................................................................................................2311.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................GCGGAATGCGTAGACGAATTC...........................................2111.00100100000000
...............................................................................................................................................................................................................AACAGACGCTCTGA-----------------------TCGG-A-----CCGA........................................................................................................................................................................2311.00100010000000
...............................................................................................................................................................................................................AACAGACGCTCTGA-----------------------TCGG-A-----CCGAA.......................................................................................................................................................................2411.00100000010000
.........................CATCAGATCATTGGCAATTTGAATCAGGC.....................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................TTGCGGAATGCGTAGACGA...............................................1911.00101000000000
.................................................................................AACAACAGCAACAGCAGCAGCAGC---AGC............................................................................................................................................................................................................................................................................................................................2740.25100100000000
.................................................................................................................................AGCAG---CAGC------AACAACA------ACAGCAGC------------AA------C..............................................................................................................................................................................................................................................2790.11100000000001
....................................................................................................GCAGC---AGCAACAACAGCAGCA...............................................................................................................................................................................................................................................................................................................21200.10202000000000
............................................................................................................................................C------AACAACA------ACAGCAGC------------AA------CAGC...........................................................................................................................................................................................................................................22180.06100100000000
.......................................................................................................GC---AGCAACAACAGCAGCAGCAACAGCAG---C.................................................................................................................................................................................................................................................................................................29180.06100100000000
...........................................................................................ACAGCAGCAGCAGC---AGCA...........................................................................................................................................................................................................................................................................................................................18200.05100010000000
...........................................................................................ACAGCAGCAGCAGC---AGCAACAACAGC...................................................................................................................................................................................................................................................................................................................26200.05100100000000
........................................................................................GCAACAGCAGCAGCAGC---AGCA...........................................................................................................................................................................................................................................................................................................................21200.05100001000000
...............................................................................................CAGCAGCAGC---AGCAACAACAGCAGC................................................................................................................................................................................................................................................................................................................25200.05100000000001
.........................................................................................................................GCAGCAACAGCAG---CAGC------A.......................................................................................................................................................................................................................................................................................18200.05100100000000
.............................................................................................................................CAACAGCAG---CAGC------AACAACA------ACAGCA.....................................................................................................................................................................................................................................................................26200.05101000000000
......................................................................................................AGC---AGCAACAACAGCAGCAGCAACAGC.......................................................................................................................................................................................................................................................................................................27200.05100100000000
.......................................................................................................GC---AGCAACAACAGCAGCAGCAACAGC.......................................................................................................................................................................................................................................................................................................26200.05101000000000
.......................................................................................................GC---AGCAACAACAGCAGCAGCAAC..........................................................................................................................................................................................................................................................................................................23200.05101000000000
.................................................................................................GCAGCAGC---AGCAACAACAGCAG.................................................................................................................................................................................................................................................................................................................22200.05101000000000
droEre2
CTCAGGTGCAGACGCT--GCAGGGCCATCAGATCATCGGCAATTTGAATCAGGTGAATATGACTGACTTTCAA-------CAACAACAGCAGCAGCAACAGCAAC---AACAACAGCAGCAGCAAC------AG---CAGC------AGCAACA------ACAGCAGC------------AA------CAGCAAAC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCTTAGA-TCCACCT-----TGTACTATTCTATACAAA---T-ATTAA----TTTGG--G-TTTTTGC-----TAAAC-GCTTTAAATATTCTCTTTGCGGAATGCGTA----------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................CAAC---AACAACAGCAGCAGCAAC------AG---CAGC------AGC.....................................................................................................................................................................................................................................................................................3132.0060000006
......................................................................................................AAC---AACAACAGCAGCAGCAAC------AG---CAGC------........................................................................................................................................................................................................................................................................................2771.1480000008
...............................................................................................................................................................................................................AACAGACGCTCTGA-----------------------TCGG-A-----CCGAAG-----T................................................................................................................................................................2611.0010000010
.TCAGGTGCAGACGCT--GCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...............................................................................................................................................................................................................AACAGACGCTCTGA-----------------------TCGG-A-----CCG.........................................................................................................................................................................2211.0010000100
...................................................................TTTCAA-------CAACAACAGCAGCAGCG..........................................................................................................................................................................................................................................................................................................................................2311.0010000010
...............................................................................................................................................................................................................AACAGACGCTCTGA-----------------------TCGG-A-----C...........................................................................................................................................................................2011.0010000100
..................................................................................................................................................................................................AC---------ACAACAGACGCTCTGA-----------------------TCGG-..................................................................................................................................................................................2211.0010001000
........................................................................................................................................................................................................................................................................................................................AA----TTTGG--G-TTTTTGC-----TAAAC-GCTT..............................................................................2411.0010000100
......TGCAGACGCT--GCAGGGCCATCAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000001
..................................................................................................................................................................................................AC---------ACAACAGACGCTCTGA-----------------------TCGG-A-----............................................................................................................................................................................2311.0010000100
.....................................................................................................................................................................................................................CGCTCTGA-----------------------TCGG-A-----CCGAAG-----TCTT.............................................................................................................................................................2311.0010000100
......................................................................................................AAC---AACAACAGCAGCAGCAAC------AG---C.................................................................................................................................................................................................................................................................................................24110.0910100000
.......................................................................AA-------CAACAACAGCAGCAGCAACAGC.....................................................................................................................................................................................................................................................................................................................................24110.0910100000
...........................................................................................................................................GC------AGCAACA------ACAGCAGC------------AA------CAGC...........................................................................................................................................................................................................................................23160.0610000100
.....................................................................................................CAAC---AACAACAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................20200.0510100000
....................................................................................................GCAAC---AACAACAGCAGCAGC................................................................................................................................................................................................................................................................................................................20200.0511000000
...........................................................................................................................AAC------AG---CAGC------AGCAACA------ACAGCAGC------------.......................................................................................................................................................................................................................................................24200.0511000000
...............................................................................................................AACAGCAGCAGCAAC------AG---CAGC------A.......................................................................................................................................................................................................................................................................................22200.0510001000
.......................................................................AA-------CAACAACAGCAGCAGCAAC........................................................................................................................................................................................................................................................................................................................................21200.0510100000
.........................................................................................................................GCAAC------AG---CAGC------AGCAACA------AC.........................................................................................................................................................................................................................................................................20200.0511000000
.....................................................................................................................................................CAACA------ACAGCAGC------------AA------CAGCA..........................................................................................................................................................................................................................................20200.0511000000
.............................................................................................................ACAACAGCAGCAGCAAC------AG---CAG...............................................................................................................................................................................................................................................................................................22200.0511000000
......................................................................................................AAC---AACAACAGCAGCAGCAAC------.......................................................................................................................................................................................................................................................................................................21200.0510100000

Generated: 05/18/2015 at 05:49 AM