ID:

dps_2937

 Coordinate:

XR_group5:27016-27166 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.3 -21.2 -21.1

Flybase annnotation

CDS [Dpse\GA29307-cds]; exon [dpse_GLEANR_9928:6]; intron [Dpse\GA29307-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAGGGATCATTGCTATTTCACCTTCAATGGCTTTGCACTGGCCATCACCGGTAATACTCAAATATTTGATGGAGTTTATAATTATAATGAATAATTATGAGTTCTCTTGTAGTTGCCACGATCGTTATTCTGCTGCTACCTTCCGAGAGTAAAATGATGGACCGTGTTTCCAACTAGAGTCACCTACTAGTCTGCCTGAATACCCATACCCATGCCCATCCTGAAGCATCCCCTGCCTCATCAACAGAATA
**************************************************************........(((((((((((((((.....)))))))))))))))...........((((.((((((((.((((.((........)))))).))))))))..)))).************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 M059
embryo
.............................................................................................................................................TCCGAGAGTAAAATGATGGACCGTGT.................................................................................... 26 0 1 52.00 52 52 0 0
.............................................................................................................................................TCCGAGAGTAAAATGATGGACCGTG..................................................................................... 25 0 1 37.00 37 37 0 0
..............................................................TATTTGATGGAGTTTATAATTATAA.................................................................................................................................................................... 25 0 1 13.00 13 13 0 0
...........................................................................................................TGTAGTTGCCACGATCGTTATTCTGC...................................................................................................................... 26 0 1 12.00 12 12 0 0
..........................................................................................................TTGTAGTTGCCACGATCGTTATTC......................................................................................................................... 24 0 1 10.00 10 10 0 0
.............................................................................................................................................TCCGAGAGTAAAATGATGGACCGTGTT................................................................................... 27 0 1 9.00 9 9 0 0
.............................................................................................................................................TCCGAGAGTAAAATGATGGACCGT...................................................................................... 24 0 1 9.00 9 9 0 0
..........................................................................................................TTGTAGTTGCCACGATCGTTATTCTGC...................................................................................................................... 27 0 1 7.00 7 7 0 0
.................................................................................................TGAGTTCTCTTGTAGTTGCCACGATC................................................................................................................................ 26 0 1 6.00 6 6 0 0
.................................................................................................TGAGTTCTCTTGTAGTTGCCACGA.................................................................................................................................. 24 0 1 6.00 6 6 0 0
..........................................................................................................TTGTAGTTGCCACGATCGTTATTCTG....................................................................................................................... 26 0 1 6.00 6 6 0 0
....................................................................................................................................................................................................TGAATACCCATACCCATGCCCATCC.............................. 25 0 1 5.00 5 5 0 0
..........................................................................................................TTGTAGTTGCCACGATCGTTATT.......................................................................................................................... 23 0 1 5.00 5 5 0 0
............................................TCACCGGTAATACTCAAATATTTGA...................................................................................................................................................................................... 25 0 1 5.00 5 5 0 0
............................................................................................................................................TTCCGAGAGTAAAATGATGGACCGT...................................................................................... 25 0 1 4.00 4 4 0 0
.............................................................................................................................................TCCGAGAGTAAAATGATGGACCG....................................................................................... 23 0 1 4.00 4 4 0 0
.......................................................................................TGAATAATTATGAGTTCTCTTGTAGT.......................................................................................................................................... 26 0 1 3.00 3 3 0 0
........................................................................................................TCTTGTAGTTGCCACGATCGTTATT.......................................................................................................................... 25 0 1 3.00 3 3 0 0
..................................................................................................GAGTTCTCTTGTAGTTGCCACGATC................................................................................................................................ 25 0 1 3.00 3 3 0 0
...................................................................................................................................................................................TCACCTACTAGTCTGCCTGAATACCCA............................................. 27 0 1 3.00 3 3 0 0
...............................................................................................TATGAGTTCTCTTGTAGTTGCCAC.................................................................................................................................... 24 0 1 3.00 3 3 0 0
.............................................................................................................TAGTTGCCACGATCGTTATTCTGC...................................................................................................................... 24 0 1 3.00 3 3 0 0
..............................................................TATTTGATGGAGTTTATAATTATA..................................................................................................................................................................... 24 0 1 3.00 3 3 0 0
.............................................................................................................TAGTTGCCACGATCGTTA............................................................................................................................ 18 0 1 3.00 3 3 0 0
...........................................................................................................TGTAGTTGCCACGATCGTTATTC......................................................................................................................... 23 0 1 3.00 3 3 0 0
.......................................................................................TGAATAATTATGAGTTCTCTTGTAG........................................................................................................................................... 25 0 1 3.00 3 3 0 0
.................................................................................................TGAGTTCTCTTGTAGTTGCCACGAT................................................................................................................................. 25 0 1 3.00 3 3 0 0
.................................................................................................................TGCCACGATCGTTATTCTGCTGC................................................................................................................... 23 0 1 3.00 3 3 0 0
........................................................................................................TCTTGTAGTTGCCACGATCGTTATTC......................................................................................................................... 26 0 1 2.00 2 2 0 0
.................................................................................................TGAGTTCTCTTGCAGTTGCCACGATC................................................................................................................................ 26 1 1 2.00 2 2 0 0
..........................................................................................................TTGTAGTTGCCACGATCGTTATTCA........................................................................................................................ 25 1 1 2.00 2 2 0 0
..........................................................................................................TTGTAGTTGCCACGATCGTTAT........................................................................................................................... 22 0 1 2.00 2 2 0 0
..............................................................................................................................................................................TAGAGTCACCTACTAGTCTG......................................................... 20 0 1 2.00 2 2 0 0
.............................................................................................................................................TCCGAGAGTAAAATGATGGACCGTGC.................................................................................... 26 1 1 2.00 2 2 0 0
.............................................................................................................TAGTTGCCACGATCGTTATTCTGCTGC................................................................................................................... 27 0 1 2.00 2 2 0 0
....................................................................................................................................................................................................TGAATACCCATACCCATGCCCATCCT............................. 26 0 1 2.00 2 2 0 0
...........................................................................................................TGTAGTTGCCACGATCGTTATTCTG....................................................................................................................... 25 0 1 2.00 2 2 0 0
........................................................................................................................................................AATGATGGACCGTGTTTCCAACTAGAG........................................................................ 27 0 1 2.00 2 2 0 0
.............................................................................................................TAGTTGCCACGATCGTTATTCTGCT..................................................................................................................... 25 0 1 1.00 1 1 0 0
.................................................................................................TGAGTTCTCTTGTAGTTGCCACGATCG............................................................................................................................... 27 0 1 1.00 1 1 0 0
..........................................................................................................TTGTAGTTGCCCCGATCGTTATTCT........................................................................................................................ 25 1 1 1.00 1 1 0 0
..................................................ATAATACTCAAATATTTGATCGAGT................................................................................................................................................................................ 25 2 1 1.00 1 1 0 0
...........................................................................................................TGTAGTTGCCACGATCGTTATTCTGCCTCT.................................................................................................................. 30 2 1 1.00 1 1 0 0
.................................................................................................TGAGTTCTCTTGTAGTTGCCA..................................................................................................................................... 21 0 1 1.00 1 1 0 0
.................TCACCTTCAATGGCTTTGCACTGG.................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0
..............................................................................................TTATGAGTTCTCTTGTAGTTGCCA..................................................................................................................................... 24 0 1 1.00 1 1 0 0
...............................................................................................................GTTGCCACGATCGTTATTCTG....................................................................................................................... 21 0 1 1.00 1 0 1 0
..........................................................................................................................................................................................CTAGTCTGCCTGAATACCCAT............................................ 21 0 1 1.00 1 0 0 1
....................................................................................................................................................GTAAAATGATGGACCGTGT.................................................................................... 19 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................TGAATACCCATACCCATGCCCA................................. 22 0 1 1.00 1 1 0 0
..........................................................................................................TTGTAGTTGCCACGATCGTTATTCT........................................................................................................................ 25 0 1 1.00 1 1 0 0
......TCATTGCTATTTCACCTTCAATGGCTT.......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0
...............................................................................................................................................CGAGAGTAAAATGATGGACCGTGTT................................................................................... 25 0 1 1.00 1 1 0 0
......................................................................................................TCTCTTGTAGTTGCCACGATCGTTA............................................................................................................................ 25 0 1 1.00 1 1 0 0
...........................TGGCTTTGCACTGGCCATC............................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0
..........TGCTATTTCACCTTCAATGGCTT.......................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
.....................................................................................................TTCTCTTGTAGTTGCCACGATCGTTA............................................................................................................................ 26 0 1 1.00 1 1 0 0
......................................................................................................................CGATCGTTATTCTGCTGCTACCTT............................................................................................................. 24 0 1 1.00 1 0 1 0
....................................................................................................................................................................TGTTTCCAACTAGAGTCACCTACT............................................................... 24 0 1 1.00 1 1 0 0
......................TTCAATGGCTTTGCACTGGC................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0
..........................................................................................................................................................TGATGGACCGTGTTTCCAACTAGAG........................................................................ 25 0 1 1.00 1 1 0 0
.............................................................ATATTTGATGGAGTTTATAATTA....................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
..............................................................................................................................ATTCTGCTGCTACCTTCCGAG........................................................................................................ 21 0 1 1.00 1 0 1 0
....................................................................................TAATGAATAATTATGAGTTCTCTTG.............................................................................................................................................. 25 0 1 1.00 1 1 0 0
............................................................................................................................................TTCCGAGAGTAAAATGATGGACCGTG..................................................................................... 26 0 1 1.00 1 1 0 0
....................................................AATACTCAAATATTTGATGGAGTTTA............................................................................................................................................................................. 26 0 1 1.00 1 1 0 0
..............................................................................................................................................................................TAGAGTCACCTACTAGTCTGCCTGAA................................................... 26 0 1 1.00 1 1 0 0
...................................................................................................................................GCTGGTTCCTTCCGAGAG...................................................................................................... 18 2 4 0.25 1 0 1 0
.....................................................................................................................................................................................ACCTACTAGTAACCCTGA.................................................... 18 3 20 0.25 5 0 5 0
..............................CGATGCGCTGGCCATCACCG......................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0

Anti-sense strand reads

CTCCCTAGTAACGATAAAGTGGAAGTTACCGAAACGTGACCGGTAGTGGCCATTATGAGTTTATAAACTACCTCAAATATTAATATTACTTATTAATACTCAAGAGAACATCAACGGTGCTAGCAATAAGACGACGATGGAAGGCTCTCATTTTACTACCTGGCACAAAGGTTGATCTCAGTGGATGATCAGACGGACTTATGGGTATGGGTACGGGTAGGACTTCGTAGGGGACGGAGTAGTTGTCTTAT
************************************************************************************........(((((((((((((((.....)))))))))))))))...........((((.((((((((.((((.((........)))))).))))))))..)))).************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 SRR902011
testis
 M040
female body
 GSM444067
head
 M059
embryo
...............................................................................................................................AAGACGACGATGGAAGGCTCTCAT.................................................................................................... 24 0 1 2148.00 2148 2146 2 0 0 0
................................................................................................................................AGACGACGATGGAAGGCTCTCAT.................................................................................................... 23 0 1 661.00 661 661 0 0 0 0
......................................................................................................................................................................................GGATGATCAGACGGACTTATGGGT............................................. 24 0 1 236.00 236 236 0 0 0 0
.......................................................................................................................................................................................GATGATCAGACGGACTTATGGGT............................................. 23 0 1 190.00 190 190 0 0 0 0
.................................................................................................................................GACGACGATGGAAGGCTCTCAT.................................................................................................... 22 0 1 153.00 153 153 0 0 0 0
..............................................................................................................................TAAGACGACGATGGAAGGCTCTCAT.................................................................................................... 25 0 1 93.00 93 93 0 0 0 0
...............................................................................................................................AAGACGACGAGGGAAGGCTCTCAT.................................................................................................... 24 1 1 67.00 67 67 0 0 0 0
...............................................................................................................................AAGACGACGATGGAAGGCTCTCA..................................................................................................... 23 0 1 47.00 47 47 0 0 0 0
............................................................................................................................AATAAGACGACGATGGAAGGCTCTCAT.................................................................................................... 27 0 1 38.00 38 37 1 0 0 0
..............................................................................................................................AAAGACGACGATGGAAGGCTCTCAT.................................................................................................... 25 1 1 36.00 36 36 0 0 0 0
................................................................................................................................AGACGACGAGGGAAGGCTCTCAT.................................................................................................... 23 1 1 30.00 30 30 0 0 0 0
.............................................................................................................................ATAAGACGACGATGGAAGGCTCTCAT.................................................................................................... 26 0 1 21.00 21 21 0 0 0 0
.........................................................................................................................AGCAATAAGACGACGATGGAAGGCT......................................................................................................... 25 0 1 17.00 17 17 0 0 0 0
...................................................................................................................................CGACGATGGAAGGCTCTCAT.................................................................................................... 20 0 1 14.00 14 14 0 0 0 0
...............................................................................................................................AAGACGACGATGGAAGGCTCTCATT................................................................................................... 25 0 1 12.00 12 12 0 0 0 0
...............................................................................................................................AAGACGACGATGGAAGGCTCTCATTT.................................................................................................. 26 0 1 12.00 12 12 0 0 0 0
................................................................................................................................AGACGACGATGGAAGGCTCTCA..................................................................................................... 22 0 1 9.00 9 9 0 0 0 0
..................................................................................................................................ACGACGATGGAAGGCTCTCAT.................................................................................................... 21 0 1 8.00 8 8 0 0 0 0
..............................................................................................................................TAAGACGACGATGGAAGGCTCTCA..................................................................................................... 24 0 1 7.00 7 7 0 0 0 0
.................................................................................................................................GACGACGAGGGAAGGCTCTCAT.................................................................................................... 22 1 1 7.00 7 7 0 0 0 0
......................................................................................................................................................................................AGATGATCAGACGGACTTATGGGT............................................. 24 1 1 7.00 7 7 0 0 0 0
...........................................................................................................ACATCAACGGTGCTAGCAAT............................................................................................................................ 20 0 1 7.00 7 7 0 0 0 0
...............................................................................................................................AAGACGACGAAGGAAGGCTCTCAT.................................................................................................... 24 1 1 7.00 7 7 0 0 0 0
...............................................GGCCATTATGAGTTTATAAACTACC................................................................................................................................................................................... 25 0 1 6.00 6 6 0 0 0 0
.........................................................................................TTATTAATACTCAAGAGAACATCAAC........................................................................................................................................ 26 0 1 6.00 6 6 0 0 0 0
...................................................................................................................GGTGCTAGCAATAAGACGACGAT................................................................................................................. 23 0 1 5.00 5 5 0 0 0 0
....................................................................................ATTACTTATTAATACTCAAGAGAA............................................................................................................................................... 24 0 1 4.00 4 4 0 0 0 0
....................................................................................................................................................................................GAGGATGATCAGACGGACTTATGGGT............................................. 26 1 1 4.00 4 4 0 0 0 0
...........................................................................................................................CAATAAGACGACGATGGAAGGCTCTCA..................................................................................................... 27 0 1 4.00 4 4 0 0 0 0
.................................................................................................................................GACGACGATGGAAGGCTCTCA..................................................................................................... 21 0 1 4.00 4 4 0 0 0 0
........................................................................................................................................................................................ATGATCAGACGGACTTATGGGT............................................. 22 0 1 4.00 4 4 0 0 0 0
...........................................................................................................ACATCAACGGTGCTAGCAATAAGAC....................................................................................................................... 25 0 1 4.00 4 4 0 0 0 0
..................................................................................ATATTACTTATTAATACTCAAGAGA................................................................................................................................................ 25 0 1 4.00 4 4 0 0 0 0
...............................................................................................................................AAGACGACGATGAAAGGCTCTCAT.................................................................................................... 24 1 1 3.00 3 3 0 0 0 0
..............................................................................................................................TAAGACGACGAGGGAAGGCTCTCAT.................................................................................................... 25 1 1 3.00 3 3 0 0 0 0
..............................................................................................................................................................................ATCTCAGTGGATGATCAGACGGACTT................................................... 26 0 1 3.00 3 3 0 0 0 0
............................................................................................TTAATACTCAAGAGAACATCAACG....................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0
..........................................................................................................................GCAATAAGACGACGATGGAAGGCT......................................................................................................... 24 0 1 3.00 3 3 0 0 0 0
.............................................................................................................................AAAAGACGACGATGGAAGGCTCTCAT.................................................................................................... 26 1 1 3.00 3 3 0 0 0 0
...............................................................................................................................AAGACGACGATGGAAGGCTCTCATTTT................................................................................................. 27 0 1 2.00 2 2 0 0 0 0
..................................................................................ATATTACTTATTAATACT....................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0
............................................................................................................................AATAAGACGACGATGGAAGGCTCTCA..................................................................................................... 26 0 1 2.00 2 2 0 0 0 0
..............................................................................................................................AAAGACGACGAGGGAAGGCTCTCAT.................................................................................................... 25 2 1 2.00 2 2 0 0 0 0
...........................................................................................................................CAATAAGACGACGATGGAAGGCTCTCAT.................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
..............................................................................................................................TAAGACGACGATGGAAGGCTCTCATT................................................................................................... 26 0 1 2.00 2 2 0 0 0 0
...............................................................................................................................ATGACGACGATGGAAGGCTCTCAT.................................................................................................... 24 1 1 2.00 2 2 0 0 0 0
..........................................................................................................................................................................GTTGATCTCAGTGGATGATC............................................................. 20 0 1 2.00 2 2 0 0 0 0
....................................................................................................CAAGAGAACATCAACGGTGCTAGCAAT............................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0
....................................................................................................................................................................................GTGGATGATCAGACGGACTTATGGGT............................................. 26 0 1 2.00 2 2 0 0 0 0
..................................................................................AAATTACTTATTAATACTCAAGAGAA............................................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0
...............................................................................................................................TAGACGACGATGGAAGGCTCTCAT.................................................................................................... 24 1 1 2.00 2 2 0 0 0 0
......................................................................................................................................................................................GGATGATCAGACGGACTTAAGGGT............................................. 24 1 1 2.00 2 2 0 0 0 0
..............................................................................................................................................................................ATCTCAGTGGATGATCAGACG........................................................ 21 0 1 2.00 2 2 0 0 0 0
.......................................................................................................................................................................................GATGATCAGACGGACTTATGGTT............................................. 23 1 1 2.00 2 2 0 0 0 0
..............................................................................................................................TAAGACGACGAGGGAAGGCTCTCATT................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................AGTATATGATCAGACGGACTTATGGGT............................................. 27 2 1 1.00 1 1 0 0 0 0
.................................................................................................................................GACGACGAGGGAAGGCTCTCA..................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
...........................................................................................................................CAATAAGACGACGATGGAAGGCT......................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................GATGATCAGACGGACTTATGGG.............................................. 22 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................GATGATCAGACGGACTTATG................................................ 20 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................GACGACGAAGGAAGGCTCTCAT.................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................AAGACGACGATGGCAGGCTCTCAT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..............................................................................................................................TAAGACGACGATGGAAGGCTCTCATC................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
................................................................................................................................AGACGGCGATGGAAGGCTCTCAT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
............................................................................................................................AATAAGACGACGAGGGAAGGCTCTCAT.................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
................................................................................................................................AGACGACGATGGAAGGCTCTCATCTT................................................................................................. 26 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................TGATCAGACGGACTTATGGGT............................................. 21 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................GGATGATCAGAAGGACTTATGGGT............................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................AAGACGACGATGGAAGGGTCTCAT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
............................................................................................................................AATAAGACGACGATGGAAGGCT......................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................AAGACGACGAGGGAAGGCTCTCATT................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................GACGACGATGGAAAGCTCTCAT.................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................ACGACGACGATGGAAGGCTCTCAT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
................................................................................................................................CGACGACGATGGAAGGCTCTCAT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
................................................................................................TCTCCAAGAGAACATCAACGGTGCTAGCAAT............................................................................................................................ 31 3 1 1.00 1 1 0 0 0 0
....................................................................................ATTACTTATTAATACTCAAGAGA................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
................................................................................................................................AGTCGACGATGGAAGGCTCTCAT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................AGAAATAAGACGACGATGGAAGGCT......................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
................................................................................................................................AGACGCCGATGGAAGGCTCTCAT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.....................................GACCGGTAGTGGCCATTATGAGTT.............................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................GAAGACGACGAGGGAAGGCTCTCAT.................................................................................................... 25 2 1 1.00 1 1 0 0 0 0
...............................................................................................................................AAGACGACGAGGGAAGGCTCTCATTT.................................................................................................. 26 1 1 1.00 1 1 0 0 0 0
............................................................................................................................AATAAGACGACGAAGGAAGGCTCTCA..................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
................................................................................................................................AGACGAAGATGGAAGGCTCTCAT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................TGATCAGACGGACTTATGGGTA............................................ 22 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................AAAGACGACGATGGAGGGCTCTCAT.................................................................................................... 25 2 1 1.00 1 1 0 0 0 0
...................................................................................................................................CGACGAGGGAAGGCTCTCAT.................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
.................................................................................AATATTACTTATTAATACTCAAGAGA................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................ATAAGACGACGAGGGAAGGCTCTCAT.................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................GGATGATCAAACGGACTTATGGGT............................................. 24 1 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................GGATGATCAGACGGACTTAGGGGT............................................. 24 1 1 1.00 1 1 0 0 0 0
..............................................................................................................................AAAGACGACAATGGAAGGCTCTCAT.................................................................................................... 25 2 1 1.00 1 1 0 0 0 0
....................................................................................ATTACTTTTTAATACTCAAGAGA................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................CAGTGGATGATCAGACGGACTTAT................................................. 24 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................AACGACGATGGAAGGCTCTCAT.................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.............................................................................GATTAATATTACTTATTAATACTCAAGAGA................................................................................................................................................ 30 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................AAGGCGACGATGGAAGGCTCTCAT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
...................................................................................................................................CGACGATGGAAGGCTCTCA..................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................GGATGATCAGACGGACTTATG................................................ 21 0 1 1.00 1 1 0 0 0 0
......................................ACCGGTAGGGGCCATTATGAGTT.............................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................................TTACTACCTGGCACAAAGGTTGATC.......................................................................... 25 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................AAGACGACGACGGAAGGCTCTCAT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................AAGACGACGATGGAAGGCTTTCAT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
...................................................................................TATTACTTATTAATACTCAAGAGA................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................AAGACGACAATGGAAGGCTCTCAT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
................................................................................................................................AGACGACGATGGAGGGCTCTCAT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..............................................................................................................................TAAGACGACGATGGAAGGCTCT....................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
................................................................................................................................AGACGACGATGGAAGGCTCTCGT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................AAGATGACGATGGAAGGCTCTCAT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
................................................................................................................................AGACGACGATGGAAGGCTCTCATC................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
................................................................................TAATATTACTTATTAATACTCAAGAGA................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................GTATGGGTACCGGTGGGACTC.......................... 21 3 3 0.33 1 0 0 1 0 0
..............................................................................................................................................................................................................................CTACGTAAGGGACGGAGTGGT........ 21 3 3 0.33 1 0 0 0 1 0
.....................................................................................................................................................................................TGGATGATCATTGGGACT.................................................... 18 3 20 0.20 4 0 0 4 0 0
.........................................GGTCATGGACATTATGAGT............................................................................................................................................................................................... 19 3 15 0.13 2 1 1 0 0 0
.....................................................................................................................................CCGATGGAATTCTCTCATT................................................................................................... 19 3 18 0.11 2 0 0 0 0 2
........................................................................................................................................................................................................................GTAGGATTTCGTAACGGACG............... 20 3 12 0.08 1 0 0 1 0 0
.....................................................................................................................................................................................................................CGGGTAGGTCTTCGCAGGA................... 19 3 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group5:26966-27216 + dps_2937 GAGGGATCATTGCTATTTCACCTTCAATGGCTTTGCACTGGCCATCACCGGTAATACTCAAATATTTGATGGAGTTTATAATTATAATGA---ATAAT----------------TATGA------------GTTCTCTTGTAGTTGCCACGATCGTTATTCTGCTGCTACCTTCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------GTTTCCAACTAGAGTCACCTACTAGTCTGCCTGAAT----------------------------------------------------------------------------------------A--CCCATACCCATGCCCATCCTGAAGCATCCCCTGCCTCATCAACAGAATA
droPer2 scaffold_58:391932-392182 - GAGGGATCATTGCTATTTCACCTTCAATGGCTTTGCACTGGCCATCACCGGTAATACTCAAATATTTGATGGAGTTTATAATTATAATGA---ATAAT----------------TATGA------------GTTCTCTTGTAGCTGCCACGATCGTTATTCTGCTGCTACCTTCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------GTTTCCAACTAGAGTCACCTACTAGTCTGCCTGAAT----------------------------------------------------------------------------------------A--CCCATACCCATGCCCATCCTGAAGCATCCCCTGCCTTATCAACAGAATA
droWil2 scf2_1100000004729:955945-956162 + TCTAGCTCATTGTTATCTAATTTTTAATATTTTTGTTGCTGTTGCCTTGGGTGAGTCTTAATTTATTTAGT--------------------------------------------------------------------------------------------------------------------------------------TAATTTCGTAATTTAAATGTCTCTTTTCTTTGTTGTTGACAGCGTGTTTCGTTACGATTTTCTTTTTGCCAAAGTAATTCTATATATAGAGAATAA---------------------------------------------------------------------------------------------ATTCGAATAAAATATATGTGGCATTACTAG--TACACAT----------------------ACATTATGGGAATA
droVir3 scaffold_13049:11182405-11182458 - GAAATGCTGCTGCTTTGTAACATTTAATGTGTACGTAGCGGGCATGTCAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:9653022-9653075 + GAGCTGGAACTGCTTTGTCACATTCAATATGTTCGTGGTGTTTATGACAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:8156586-8156786 + GAGCTCTCATTGCCATATTCTCTTAAATGGCTATGTTCTTATTACAACTGGTAAGTTGCAGTCGGTTCGTTGGCTTACTATATATATATGCTCATAAT----------------ATAGT------------TCTACTTTGTATACACAGTGTCCGCGATTTTGTCATTACTAT------------TGCCATATTTG-------------------------------------------------------------------------------------------------GTTTATAA---------------------------------------------------------------------------------------------ATACGATTGAAAATTATTTGACTA--CTTATGGTTAT------------------------------------GA
droAna3 scaffold_13337:9417230-9417497 - GACTTGGAACTGTTATGTAGCCTTCAATACATTCTTAGTCATATCCTTAGGTGAGTTATATCTAATAACTGAT------------ATCTA---ATAAT----------------CAAGA------------ATTGTTCCCCAGTTGCTGCTATACTTGTGAGCTTGTTGCCTTCAGAATCTAAAGTGAAGGAAATGATGCGT--------------------------------------------------------------------------------------------------------------TAACTTCTTCCCAGATTCTTAAAGATCTAAAATATGTATATC-----------------GTTATCCCTTCCAATTGATATTAATATTAATAAAAGGTATTTGGCAATACTTT-------------------------------TCAATCTTTAAACG
droBip1 scf7180000396544:228386-228611 - GACGTGGAACTGTCATGTAGCCTTCAATACCTTCTTAGTGATATCCTTACGTGAGTGATAATCCTAAACTAAT------------ATTTA---ATAAT---------------TCAAGA------------ACCTTTCCACAGTCGGTGCTCTTCTTGTGAGCTTTTTGCCTTCGGAATCTAAGTTAAGGGAAACCACCAAG--------------------------------------------------------------------------------------------------------------TATTAACGTGCCCGATTA------------------------------------------------------------------------------------------TTAA-ATAAATATCTATTATTACCATAATTCTTTCTTATTAATATATTT
droKik1 scf7180000302441:1040271-1040413 - GGGTTTGAACTGTCTTGTCACCTTTAATACCTTGCTGATATGTCTGGTAGGTGAGTTCTATATTTTATTTAAT---------------AA---ATATC----------------TTTGTATTCTCCTAACAAAAAACAAACAGTTTCTAGTATTCTTGTCTTTATGCTACCTTCGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454105:991662-991915 + GTCGAATGTCTGCCTCCTCACCTTCAACCTCTTCATCCTGCTGTTCTTGGGTAAGATGTTGGCTAC------C------------AAA-T---GCGAGTACAAGTTCCCACCTCTCCGG------------TAATCTCCGCAGCTTGCGGTGTCCTCGTGTACTTGCTGCCTTCGGAAATTAAAATGAGGAGCTTAACACTG--------------------------------------------------------------------------------------------------------------TGATGTCTCTCCTGGTTTTCCGCACTCAAGTTTGTATACGACTTTGTAAATAAAGTGCTGTTGA-----------------------------------------------------------------------GCCCTGTTTGTACTAGCCAACT
droEle1 scf7180000491249:2709726-2709983 - TTCGAAAATCTGCTATGTCACCTTTAATCTCCTCATTCTTTTACTAATAGGTAAGCAATTCCTTTTACTTAAA-TTT--------ACTTT---CT---------------ACACAAAGG------------AAATCTCTATAGTTTGCGGCATTCTAGTACTCATTTTACCATCTGAATATAAAGTCAGGAGTTTAATAATGCAAAAA----------------------------------------------------------------------------------------------TAATGTAATATATATGACTTTTTAAAT----------------------------------AAAATAAAGTTCTGCCTTTCTATA--------------------------------------------CGATTTTTTATGAAATTAACTTTCTGGTTCACAAAACT
droRho1 scf7180000767925:3089-3121 - GACCCACAGCTGTTTGGTCACCTTCAATCTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302428:9444839-9444892 + ATCGCACGCCTGCTATGTAACCTTCAATGTTTTTATTCTGGTGCTCCTGGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415857:480694-480855 + AACACACGTCTGCTATGCCACCTTCAATAGTTTTATTCTATTGCTCATAGGTAAGCTTTGACTTTTTGCTAAAAATTATAACTATT------------------------CCATAAAAA------------ATATCCCAATAGTTTGCGGTATCCTCGTGTTCTTATTACCCGCCGAATACAGAATGGATAGTTTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409466:390426-390458 + GCGGTACAACTGCTATGTTACCTTCAATCTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:2663407-2663519 + GTCGTACATCTGCTATGTAACCTTTAATATTTTCATTCTAGTGCTCATAGGTAAGTGAGAACTTTGATATAAT--G------------------------------------------------------------------------------------------------------------------------------ACATAATGATATGATTAAGAAGTCTATTTGAATAGTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3l:2550691-2550796 + GTCGCACATTTGCTATGTAACCTTTAATATATTTATTATAGTGCTCATAGGTAAGCGAGAACTTTTAGCA---------------------------------------------------------------------------------------------------------------------------------------TAATGATATGACTAAGAAGTCTATTTCAATAGTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_2:2689254-2689367 + GTCGCACATTTGCTATGTAACCTTTAATATATTTATTATAGTGCTCATAGGTAAGCGAGAACTTTTAGCTCGAACTTTTAATG-------------------------------------------------------------------------------------------------------------------------------ATATGACTAAGAAGTCTATTTCAATAGTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3L:9271599-9271652 - GTCGCACAGCTGCTACGTAACCTTCAATACCTTTATTGTAGTGCTCATAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:2683173-2683200 + GTCGCACAGCTGCTATGTTACCTTTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GAGGGATCATTGCTATTTCACCTTCAATGGCTTTGCACTGGCCATCACCGGTAATACTCAAATATTTGATGGAGTTTATAATTATAATGA---ATAAT----------------TATGA------------GTTCTCTTGTAGTTGCCACGATCGTTATTCTGCTGCTACCTTCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------GTTTCCAACTAGAGTCACCTACTAGTCTGCCTGAAT----------------------------------------------------------------------------------------A--CCCATACCCATGCCCATCCTGAAGCATCCCCTGCCTCATCAACAGAATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................TCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------GT..............................................................................................................................................................................26152.005200000005200
............................................................................................................................................................................TCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------G...............................................................................................................................................................................25137.003700000003700
..............................................................TATTTGATGGAGTTTATAATTATAA..............................................................................................................................................................................................................................................................................................................................................................................................25113.001300000001300
..........................................................................................................................................TGTAGTTGCCACGATCGTTATTCTGC.................................................................................................................................................................................................................................................................................................................26112.001200000001200
.........................................................................................................................................TTGTAGTTGCCACGATCGTTATTC....................................................................................................................................................................................................................................................................................................................24110.001000000001000
............................................................................................................................................................................TCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------GTT.............................................................................................................................................................................2719.0090000000900
............................................................................................................................................................................TCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------................................................................................................................................................................................2419.0090000000900
.........................................................................................................................................TTGTAGTTGCCACGATCGTTATTCTGC.................................................................................................................................................................................................................................................................................................................2717.0070000000700
....................................................................................................................TGA------------GTTCTCTTGTAGTTGCCACGATC...........................................................................................................................................................................................................................................................................................................................2616.0060000000600
....................................................................................................................TGA------------GTTCTCTTGTAGTTGCCACGA.............................................................................................................................................................................................................................................................................................................................2416.0060000000600
.........................................................................................................................................TTGTAGTTGCCACGATCGTTATTCTG..................................................................................................................................................................................................................................................................................................................2616.0060000000600
....................................................................................................................................................................................................................................................................................................................................TGAAT----------------------------------------------------------------------------------------A--CCCATACCCATGCCCATCC..............................2515.0050000000500
.........................................................................................................................................TTGTAGTTGCCACGATCGTTATT.....................................................................................................................................................................................................................................................................................................................2315.0050000000500
............................................TCACCGGTAATACTCAAATATTTGA................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000500
...........................................................................................................................................................................TTCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------................................................................................................................................................................................2514.0040000000400
............................................................................................................................................................................TCCGAGAGTAAAATGATGGACCG..................................................................................................................................................................................................................................................................................2314.0040000000400
.......................................................................................TGA---ATAAT----------------TATGA------------GTTCTCTTGTAGT.....................................................................................................................................................................................................................................................................................................................................2613.0030000000300
.......................................................................................................................................TCTTGTAGTTGCCACGATCGTTATT.....................................................................................................................................................................................................................................................................................................................2513.0030000000300
.....................................................................................................................GA------------GTTCTCTTGTAGTTGCCACGATC...........................................................................................................................................................................................................................................................................................................................2513.0030000000300
...................................................................................................................................................................................................................................................................................................................TCACCTACTAGTCTGCCTGAAT----------------------------------------------------------------------------------------A--CCCA.............................................2713.0030000000300
..................................................................................................................TATGA------------GTTCTCTTGTAGTTGCCAC...............................................................................................................................................................................................................................................................................................................................2413.0030000000300
............................................................................................................................................TAGTTGCCACGATCGTTATTCTGC.................................................................................................................................................................................................................................................................................................................2413.0030000000300
..............................................................TATTTGATGGAGTTTATAATTATA...............................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000300
............................................................................................................................................TAGTTGCCACGATCGTTA.......................................................................................................................................................................................................................................................................................................................1813.0030000000300
..........................................................................................................................................TGTAGTTGCCACGATCGTTATTC....................................................................................................................................................................................................................................................................................................................2313.0030000000300
.......................................................................................TGA---ATAAT----------------TATGA------------GTTCTCTTGTAG......................................................................................................................................................................................................................................................................................................................................2513.0030000000300
....................................................................................................................TGA------------GTTCTCTTGTAGTTGCCACGAT............................................................................................................................................................................................................................................................................................................................2513.0030000000300
................................................................................................................................................TGCCACGATCGTTATTCTGCTGC..............................................................................................................................................................................................................................................................................................................2313.0030000000300
.......................................................................................................................................TCTTGTAGTTGCCACGATCGTTATTC....................................................................................................................................................................................................................................................................................................................2612.0020000000200
.........................................................................................................................................TTGTAGTTGCCACGATCGTTATTCA...................................................................................................................................................................................................................................................................................................................2512.0020000000200
.........................................................................................................................................TTGTAGTTGCCACGATCGTTAT......................................................................................................................................................................................................................................................................................................................2212.0020000000200
..............................................................................................................................................................................................................................................................................................................TAGAGTCACCTACTAGTCTG...................................................................................................................................................2012.0020000000200
............................................................................................................................................................................TCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------GC..............................................................................................................................................................................2612.0020000000200
............................................................................................................................................TAGTTGCCACGATCGTTATTCTGCTGC..............................................................................................................................................................................................................................................................................................................2712.0020000000200
....................................................................................................................................................................................................................................................................................................................................TGAAT----------------------------------------------------------------------------------------A--CCCATACCCATGCCCATCCT.............................2612.0020000000200
..........................................................................................................................................TGTAGTTGCCACGATCGTTATTCTG..................................................................................................................................................................................................................................................................................................................2512.0020000000200
.......................................................................................................................................................................................AATGATGGACCGT-------------------------------------------------------------------------------------------------GTTTCCAACTAGAG..................................................................................................................................................................2712.0020000000200
............................................................................................................................................TAGTTGCCACGATCGTTATTCTGCT................................................................................................................................................................................................................................................................................................................2511.0010000000100
....................................................................................................................TGA------------GTTCTCTTGTAGTTGCCACGATCG..........................................................................................................................................................................................................................................................................................................................2711.0010000000100
....................................................................................................................TGA------------GTTCTCTTGTAGTTGCCA................................................................................................................................................................................................................................................................................................................................2111.0010000000100
.................TCACCTTCAATGGCTTTGCACTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000100
.................................................................................................T----------------TATGA------------GTTCTCTTGTAGTTGCCA................................................................................................................................................................................................................................................................................................................................2411.0010000000100
..............................................................................................................................................GTTGCCACGATCGTTATTCTG..................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................CTAGTCTGCCTGAAT----------------------------------------------------------------------------------------A--CCCAT............................................2111.0010010000000
...................................................................................................................................................................................GTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------GT..............................................................................................................................................................................1911.0010000000100
....................................................................................................................................................................................................................................................................................................................................TGAAT----------------------------------------------------------------------------------------A--CCCATACCCATGCCCA.................................2211.0010000000100
.........................................................................................................................................TTGTAGTTGCCACGATCGTTATTCT...................................................................................................................................................................................................................................................................................................................2511.0010000000100
......TCATTGCTATTTCACCTTCAATGGCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..............................................................................................................................................................................CGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------GTT.............................................................................................................................................................................2511.0010000000100
.....................................................................................................................................TCTCTTGTAGTTGCCACGATCGTTA.......................................................................................................................................................................................................................................................................................................................2511.0010000000100
...........................TGGCTTTGCACTGGCCATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........TGCTATTTCACCTTCAATGGCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000100
....................................................................................................................................TTCTCTTGTAGTTGCCACGATCGTTA.......................................................................................................................................................................................................................................................................................................................2611.0010000000100
.....................................................................................................................................................CGATCGTTATTCTGCTGCTACCTT........................................................................................................................................................................................................................................................................................................2411.0010100000000
...................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------GTTTCCAACTAGAGTCACCTACT.........................................................................................................................................................2411.0010000000100
......................TTCAATGGCTTTGCACTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................TGATGGACCGT-------------------------------------------------------------------------------------------------GTTTCCAACTAGAG..................................................................................................................................................................2511.0010000000100
.............................................................ATATTTGATGGAGTTTATAATTA.................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000100
.............................................................................................................................................................ATTCTGCTGCTACCTTCCGAG...................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................TAATGA---ATAAT----------------TATGA------------GTTCTCTTG.........................................................................................................................................................................................................................................................................................................................................2511.0010000000100
...........................................................................................................................................................................TTCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------G...............................................................................................................................................................................2611.0010000000100
....................................................AATACTCAAATATTTGATGGAGTTTA.......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000100
..............................................................................................................................................................................................................................................................................................................TAGAGTCACCTACTAGTCTGCCTGAA.............................................................................................................................................2611.0010000000100
droPer2
GAGGGATCATTGCTATTTCACCTTCAATGGCTTTGCACTGGCCATCACCGGTAATACTCAAATATTTGATGGAGTTTATAATTATAATGA---ATAAT----------------TATGA------------GTTCTCTTGTAGCTGCCACGATCGTTATTCTGCTGCTACCTTCCGAGAGTAAAATGATGGACCGT-------------------------------------------------------------------------------------------------GTTTCCAACTAGAGTCACCTACTAGTCTGCCTGAAT----------------------------------------------------------------------------------------A--CCCATACCCATGCCCATCCTGAAGCATCCCCTGCCTTATCAACAGAATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................CACCTTCAATGGCTTTGCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCATGCCCATCCTGAAGC........................2111.001010000
................................................................................................................................................................................................CCGT-------------------------------------------------------------------------------------------------GTTTCCAACTAGAGTCA...............................................................................................................................................................2111.001010000
droWil2
TCTAGCTCATTGTTATCTAATTTTTAATATTTTTGTTGCTGTTGCCTTGGGTGAGTCTTAATTTATTTAGT--------------------------------------------------------------------------------------------------------------------------------------TAATTTCGTAATTTAAATGTCTCTTTTCTTTGTTGTTGACAGCGTGTTTCGTTACGATTTTCTTTTTGCCAAAGTAATTCTATATATAGAGAATAA---------------------------------------------------------------------------------------------ATTCGAATAAAATATATGTGGCATTACTAG--TACACAT----------------------ACATTATGGGAATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GAAATGCTGCTGCTTTGTAACATTTAATGTGTACGTAGCGGGCATGTCAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................TTAATGTGTACGTAGCGGGCATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
GAGCTGGAACTGCTTTGTCACATTCAATATGTTCGTGGTGTTTATGACAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GAGCTCTCATTGCCATATTCTCTTAAATGGCTATGTTCTTATTACAACTGGTAAGTTGCAGTCGGTTCGTTGGCTTACTATATATATATGCTCATAAT----------------ATAGT------------TCTACTTTGTATACACAGTGTCCGCGATTTTGTCATTACTAT------------TGCCATATTTG-------------------------------------------------------------------------------------------------GTTTATAA---------------------------------------------------------------------------------------------ATACGATTGAAAATTATTTGACTA--CTTATGGTTAT------------------------------------GASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GACTTGGAACTGTTATGTAGCCTTCAATACATTCTTAGTCATATCCTTAGGTGAGTTATATCTAATAACTGAT------------ATCTA---ATAAT----------------CAAGA------------ATTGTTCCCCAGTTGCTGCTATACTTGTGAGCTTGTTGCCTTCAGAATCTAAAGTGAAGGAAATGATGCGT--------------------------------------------------------------------------------------------------------------TAACTTCTTCCCAGATTCTTAAAGATCTAAAATATGTATATC-----------------GTTATCCCTTCCAATTGATATTAATATTAATAAAAGGTATTTGGCAATACTTT-------------------------------TCAATCTTTAAACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GACGTGGAACTGTCATGTAGCCTTCAATACCTTCTTAGTGATATCCTTACGTGAGTGATAATCCTAAACTAAT------------ATTTA---ATAAT---------------TCAAGA------------ACCTTTCCACAGTCGGTGCTCTTCTTGTGAGCTTTTTGCCTTCGGAATCTAAGTTAAGGGAAACCACCAAG--------------------------------------------------------------------------------------------------------------TATTAACGTGCCCGATTA------------------------------------------------------------------------------------------TTAA-ATAAATATCTATTATTACCATAATTCTTTCTTATTAATATATTTSizeHit CountTotal NormTotal
No Reads
droKik1
GGGTTTGAACTGTCTTGTCACCTTTAATACCTTGCTGATATGTCTGGTAGGTGAGTTCTATATTTTATTTAAT---------------AA---ATATC----------------TTTGTATTCTCCTAACAAAAAACAAACAGTTTCTAGTATTCTTGTCTTTATGCTACCTTCGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTCGAATGTCTGCCTCCTCACCTTCAACCTCTTCATCCTGCTGTTCTTGGGTAAGATGTTGGCTAC------C------------AAA-T---GCGAGTACAAGTTCCCACCTCTCCGG------------TAATCTCCGCAGCTTGCGGTGTCCTCGTGTACTTGCTGCCTTCGGAAATTAAAATGAGGAGCTTAACACTG--------------------------------------------------------------------------------------------------------------TGATGTCTCTCCTGGTTTTCCGCACTCAAGTTTGTATACGACTTTGTAAATAAAGTGCTGTTGA-----------------------------------------------------------------------GCCCTGTTTGTACTAGCCAACTSizeHit CountTotal NormTotal
No Reads
droEle1
TTCGAAAATCTGCTATGTCACCTTTAATCTCCTCATTCTTTTACTAATAGGTAAGCAATTCCTTTTACTTAAA-TTT--------ACTTT---CT---------------ACACAAAGG------------AAATCTCTATAGTTTGCGGCATTCTAGTACTCATTTTACCATCTGAATATAAAGTCAGGAGTTTAATAATGCAAAAA----------------------------------------------------------------------------------------------TAATGTAATATATATGACTTTTTAAAT----------------------------------AAAATAAAGTTCTGCCTTTCTATA--------------------------------------------CGATTTTTTATGAAATTAACTTTCTGGTTCACAAAACTSizeHit CountTotal NormTotal
No Reads
droRho1
GACCCACAGCTGTTTGGTCACCTTCAATCTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATCGCACGCCTGCTATGTAACCTTCAATGTTTTTATTCTGGTGCTCCTGGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AACACACGTCTGCTATGCCACCTTCAATAGTTTTATTCTATTGCTCATAGGTAAGCTTTGACTTTTTGCTAAAAATTATAACTATT------------------------CCATAAAAA------------ATATCCCAATAGTTTGCGGTATCCTCGTGTTCTTATTACCCGCCGAATACAGAATGGATAGTTTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCGGTACAACTGCTATGTTACCTTCAATCTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GTCGTACATCTGCTATGTAACCTTTAATATTTTCATTCTAGTGCTCATAGGTAAGTGAGAACTTTGATATAAT--G------------------------------------------------------------------------------------------------------------------------------ACATAATGATATGATTAAGAAGTCTATTTGAATAGTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
GTCGCACATTTGCTATGTAACCTTTAATATATTTATTATAGTGCTCATAGGTAAGCGAGAACTTTTAGCA---------------------------------------------------------------------------------------------------------------------------------------TAATGATATGACTAAGAAGTCTATTTCAATAGTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GTCGCACATTTGCTATGTAACCTTTAATATATTTATTATAGTGCTCATAGGTAAGCGAGAACTTTTAGCTCGAACTTTTAATG-------------------------------------------------------------------------------------------------------------------------------ATATGACTAAGAAGTCTATTTCAATAGTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTCGCACAGCTGCTACGTAACCTTCAATACCTTTATTGTAGTGCTCATAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTCGCACAGCTGCTATGTTACCTTTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 05:45 AM