ID:

dps_2922

 Coordinate:

XR_group5:21000-21150 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.4 -9.0 -8.8

Flybase annnotation

exon [dpse_GLEANR_9918:2]; CDS [Dpse\GA13378-cds]; intron [Dpse\GA13378-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCTCTTTACTCTTCCCCTTTTCTTAGCTTTAGTTTTAGTATTCGTTTTAGGAGTAGTCTTAGTCATAGACTATGTAACACTTTTCATTCTTCGCCAAGTAATAGTTTGGTTCTTTGAGTTGAGTTGAAAAGAGTTGAGCCACTGCCGTCAGGGACACTGCAGGAATGGTTTAAGTTTGTCCCTATCTCCCCCACCACCAGGAACTAGTCGCGTCGGACTGCCGAGTGGACCCAACAGTCGTAAGAGCTCC
*****************************************************************************************************************.........................((((((((.(((...)))...))))...)))).******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 M059
embryo
 GSM343916
embryo
....................................................................................................................................................TCAGGGACACTGCAGGAATGGTT................................................................................ 23 0 1 204.00 204 203 1 0 0
.................................................................................................................TTTGAGTTGAGTTGAAAAGAGT.................................................................................................................... 22 0 1 20.00 20 18 2 0 0
.................................................................................................................TTTGAGTTGAGTTGAAAAGAGTTGA................................................................................................................. 25 0 1 15.00 15 13 2 0 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGG.................................................................................. 21 0 1 13.00 13 13 0 0 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGGTTTAA............................................................................. 26 0 1 13.00 13 12 1 0 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGGTTTAAG............................................................................ 27 0 1 11.00 11 11 0 0 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGGT................................................................................. 22 0 1 11.00 11 11 0 0 0
.................................................................................................................TTTGAGTTGAGTTGAAAAGAG..................................................................................................................... 21 0 1 10.00 10 10 0 0 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGGTTT............................................................................... 24 0 1 10.00 10 10 0 0 0
...............................................................................................................................................TGCCGTCAGGGACACTGCAGGAATGG.................................................................................. 26 0 1 5.00 5 5 0 0 0
.......................TTAGCTTTAGTTTTAGTATTCGTTT........................................................................................................................................................................................................... 25 0 1 5.00 5 5 0 0 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGGTTA............................................................................... 24 1 1 5.00 5 5 0 0 0
.................................................................................................................TTTGAGTTGAGTTGAAAAGAGTT................................................................................................................... 23 0 1 4.00 4 2 2 0 0
......................................................................................................TAGTTTGGTTCTTTGAGTTGAGT.............................................................................................................................. 23 0 1 4.00 4 4 0 0 0
....................................................................................TCATTCTTCGCCAAGTAATAGTTTGGTT........................................................................................................................................... 28 0 1 4.00 4 4 0 0 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGGTTTAAA............................................................................ 27 1 1 4.00 4 4 0 0 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGGTA................................................................................ 23 1 1 4.00 4 4 0 0 0
.................................................................................................................TTTGAGTTGAGTTGAAAAGAGTTG.................................................................................................................. 24 0 1 4.00 4 3 1 0 0
..............................TAGTTTTAGTATTCGTTTTAGGAG..................................................................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0
........................................................................................................................TGAGTTGAAAAGAGTTGAGCCACTGC......................................................................................................... 26 0 1 3.00 3 3 0 0 0
.................................................................................................................TTTGAGTTGAGTTGAAAAGA...................................................................................................................... 20 0 1 3.00 3 3 0 0 0
.............................TTAGTTTTAGTATTCGTTTTAGG....................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0
........................TAGCTTTAGTTTTAGTATTCGTTA........................................................................................................................................................................................................... 24 1 1 2.00 2 2 0 0 0
....................................................................................................................................................................AATGGTTTAAGTTTGTCCCTATC................................................................ 23 0 1 2.00 2 2 0 0 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGGA................................................................................. 22 1 1 2.00 2 2 0 0 0
...................................................................................................................................................................................................CACCAGGAACTAGTCGCGTCGGACTGC............................. 27 0 1 2.00 2 2 0 0 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGGTTTA.............................................................................. 25 0 1 2.00 2 2 0 0 0
........................TAGCTTTAGTTTTAGTATTCGTTT........................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0
.............................................................................................................................................................................................................TAGTCGCGTCGGACTGCCGAGTGA...................... 24 1 1 2.00 2 2 0 0 0
.....................................................................................................................................................................................................CCAGGAACTAGTCGCGTCGGACTGC............................. 25 0 1 2.00 2 2 0 0 0
........................................................................................................................TGAGTTGAAAAGAGTTGAGCC.............................................................................................................. 21 0 1 2.00 2 1 1 0 0
...................................................................................................................................................GTCAGGGACACTGCAGGAATGGT................................................................................. 23 0 1 2.00 2 2 0 0 0
..............................................................................................................................................CAGGCATCAGGGACACTGCAGGAATGGTT................................................................................ 29 3 1 2.00 2 2 0 0 0
...........................................CGTTTTAGGAGTAGTCTTAGTCA......................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0
.............................TTAGTTTTAGTATTCGTTTTAGGAG..................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................TGTCCCTATCTCCCCCACC....................................................... 19 0 1 1.00 1 0 1 0 0
..............................................................................................................................................................TGCAGGAATGGTTTAAGTTTG........................................................................ 21 0 1 1.00 1 0 1 0 0
...............................................................................................................................................................................TTTGTCCCTATCTCCCCCACC....................................................... 21 0 1 1.00 1 0 1 0 0
.................................................................................................................TTTGAGTTGTGTTGAAAAGAGTT................................................................................................................... 23 1 1 1.00 1 1 0 0 0
...............................................................................................................................................TGCCGTCAGGGACACTGCAGGAATGGTT................................................................................ 28 0 1 1.00 1 0 1 0 0
......................................................................................................................................................................................................CAGGAACTAGTCGCGTCGGAC................................ 21 0 1 1.00 1 1 0 0 0
.................................................................................................................TTTGAGTTGAGTTGAAAAGAGTTGAGC............................................................................................................... 27 0 1 1.00 1 0 1 0 0
......................................................................................................TAGTTTGGTTCTTTGAGTTG................................................................................................................................. 20 0 1 1.00 1 0 1 0 0
.........................................................................................................................................................................................................GAACTAGTCGCGTCGGACTGCCGA.......................... 24 0 1 1.00 1 1 0 0 0
........................................................................................................................TGAGTTGAAAAGAGTTGAGCCACT........................................................................................................... 24 0 1 1.00 1 0 1 0 0
...........................................................................................................TGGTTCTTTGAGTTGAGTTGAAAAG....................................................................................................................... 25 0 1 1.00 1 0 1 0 0
.......................................................................................................................................TGAGCCACTGCCGTCAGGGAC............................................................................................... 21 0 1 1.00 1 0 1 0 0
....AATTACTCTTCCCCTTTTCTTAGCTT............................................................................................................................................................................................................................. 26 2 1 1.00 1 0 1 0 0
..................................................................................................................TTGAGTTGAGTTGAAAAGAG..................................................................................................................... 20 0 1 1.00 1 0 1 0 0
..........................................................................GTAACACTTTTCATTCTTCGCC........................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0
..........................................................................................................................................................................................................................CTGCCGAGTGGACCCAACGT............. 20 2 1 1.00 1 0 0 0 1
.............................................................................................................................................ACTGCCGTCAGGGACACTGCAGG....................................................................................... 23 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................AGCAGGAACTAGTCGCGTCGGAC................................ 23 1 1 1.00 1 0 0 1 0
....................................................................................................................................................TCAGGGACACTGCAGCAATGGTT................................................................................ 23 1 1 1.00 1 1 0 0 0
..................................TTTAGTATTCGTTTTAGGAGTAGTC................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0
...........................................................................................................TGGTTCTTTGAGTTGAGTTGAAAA........................................................................................................................ 24 0 1 1.00 1 0 1 0 0
.............................................................................ACACTTTTCATTCTTCGCCAAG........................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0
...............................AGTTTTAGTATTCGTTT........................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0
...................................................................................TTCATTCTTCGCCAAGTAATAGTT................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
.......................................................................................................................TTGAGTTGAAAAGAGTTGAG................................................................................................................ 20 0 1 1.00 1 0 1 0 0
.................................................................................................................TTTGAGTTGAGTTGAAAAGAGTTGAC................................................................................................................ 26 1 1 1.00 1 0 0 1 0
....................................................................................................................................................TCAGGGACACTGCAGGAATGGTTAA.............................................................................. 25 1 1 1.00 1 1 0 0 0
.......................................................................................................................................TGAGCCACTGCCGTCAGGGACACTGCA......................................................................................... 27 0 1 1.00 1 0 1 0 0
................................................................................................................................................................................TTGTCCCTATCTCCTTCACCACC.................................................... 23 2 1 1.00 1 1 0 0 0
.............................TTAGTTTTAGTATTCGTTTTAGGA...................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
................................................................................................................................................GCCGTCAGGGACACTGCAGGAATG................................................................................... 24 0 1 1.00 1 0 1 0 0
.............................................................................................................................................................................................................TAGTCGCGTCGGACTGCCGAG......................... 21 0 1 1.00 1 1 0 0 0
.................................................................................................................TTTGAGTTGAGTTGAAAAGAGTTGAG................................................................................................................ 26 0 1 1.00 1 0 1 0 0
.................................................................................................................TTTGAGTTGAGTTGAAAAGAGA.................................................................................................................... 22 1 1 1.00 1 1 0 0 0
....................................................................................................................................................................................CCCTATCTCCCCCACCACCAGGAAC.............................................. 25 0 1 1.00 1 0 1 0 0
.........................................................................TGTAACACTTTTCATTCTTCGCC........................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0
.........................................................................TGTAACACTTTTCATTCTTCGC............................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0
................................................................................................................................................................................................................................AGTGGACCCAACAGTCGTAAGAGC... 24 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................TCAGGACACTGCAGGAATGG.................................................................................. 20 3 4 0.25 1 1 0 0 0
.......................................................AGTCTTAACCATAAACTATG................................................................................................................................................................................ 20 3 14 0.21 3 0 3 0 0
..............................................................................................................................GAAAAGCGTAGAGCCAGTGCC........................................................................................................ 21 3 5 0.20 1 0 1 0 0

Anti-sense strand reads

AAGAGAAATGAGAAGGGGAAAAGAATCGAAATCAAAATCATAAGCAAAATCCTCATCAGAATCAGTATCTGATACATTGTGAAAAGTAAGAAGCGGTTCATTATCAAACCAAGAAACTCAACTCAACTTTTCTCAACTCGGTGACGGCAGTCCCTGTGACGTCCTTACCAAATTCAAACAGGGATAGAGGGGGTGGTGGTCCTTGATCAGCGCAGCCTGACGGCTCACCTGGGTTGTCAGCATTCTCGAGG
********************************************************************************.........................((((((((.(((...)))...))))...)))).***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 M059
embryo
 M062
head
 GSM343916
embryo
 SRR902011
testis
 V112
male body
.................................................................................................TCATTATCAAACCAAGAAACTCAACT................................................................................................................................ 26 0 1 406.00 406 393 10 3 0 0 0 0
...........................................................................................................................................................................................................................ACGGCTCACCTGGGTTGTCAGCAT........ 24 0 1 348.00 348 334 14 0 0 0 0 0
........................................................................................................CAAACCAAGAAACTCAACTCAACTTT......................................................................................................................... 26 0 1 134.00 134 127 7 0 0 0 0 0
............................................................................................................................................................................................................................CGGCTCACCTGGGTTGTCAGCAT........ 23 0 1 117.00 117 103 13 1 0 0 0 0
..........................................................................................................................................................................................................................GACGGCTCACCTGGGTTGTCAGCAT........ 25 0 1 103.00 103 70 33 0 0 0 0 0
................................................................................................TTCATTATCAAACCAAGAAACTCAACT................................................................................................................................ 27 0 1 79.00 79 73 5 1 0 0 0 0
..................................................................................................CATTATCAAACCAAGAAACTCAACT................................................................................................................................ 25 0 1 48.00 48 48 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGCTCACCTGGGTTGTCAGCAT........ 22 0 1 29.00 29 22 7 0 0 0 0 0
.........................................................................................................................................................................................................................TGACGGCTCACCTGGGTTGTCAGCAT........ 26 0 1 25.00 25 3 22 0 0 0 0 0
...................................................................................................ATTATCAAACCAAGAAACTCAACT................................................................................................................................ 24 0 1 21.00 21 20 0 1 0 0 0 0
......................................................................................................ATCAAACCAAGAAACTCAACTCAACTTT......................................................................................................................... 28 0 1 16.00 16 16 0 0 0 0 0 0
..............................................................CAGTATCTGATACATTGTGAAAAGT.................................................................................................................................................................... 25 0 1 15.00 15 3 12 0 0 0 0 0
.............................................................................................CGGTTCATTATCAAACCAAGAAAC...................................................................................................................................... 24 0 1 13.00 13 0 13 0 0 0 0 0
............................................CAAAATCCTCATCAGAATCAGTAT....................................................................................................................................................................................... 24 0 1 12.00 12 12 0 0 0 0 0 0
............................................CAAAATCCTCATCAGAATCAGTATCT..................................................................................................................................................................................... 26 0 1 10.00 10 10 0 0 0 0 0 0
........................................................................................................CAAACCAAGAAACTCAACTCAACTTTT........................................................................................................................ 27 0 1 10.00 10 10 0 0 0 0 0 0
....................................................................................................TTATCAAACCAAGAAACTCAACT................................................................................................................................ 23 0 1 10.00 10 9 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACGGCTCACCGGGGTTGTCAGCAT........ 24 1 1 8.00 8 8 0 0 0 0 0 0
..........................................AGCAAAATCCTCATCAGAATCAGTAT....................................................................................................................................................................................... 26 0 1 7.00 7 6 1 0 0 0 0 0
..........................CGAAATCAAAATCATAAGCAAAATCCT...................................................................................................................................................................................................... 27 0 1 7.00 7 4 3 0 0 0 0 0
...........................................................................................................................................................................................................................ACGGCTCACCTGGGTTGTCAGCATT....... 25 0 1 7.00 7 5 2 0 0 0 0 0
..............................................................................................................................................................................................................................GCTCACCTGGGTTGTCAGCAT........ 21 0 1 6.00 6 4 2 0 0 0 0 0
.......................................................................................................TCAAACCAAGAAACTCAACTCAACTTT......................................................................................................................... 27 0 1 6.00 6 5 1 0 0 0 0 0
......................................CATAAGCAAAATCCTCATCAGAAT............................................................................................................................................................................................. 24 0 1 6.00 6 6 0 0 0 0 0 0
..........................CGAAATCAAAATCATAAGCAAAAT......................................................................................................................................................................................................... 24 0 1 6.00 6 4 2 0 0 0 0 0
.............................................................................TGTGAAAAGTAAGAAGCGGTTCAT...................................................................................................................................................... 24 0 1 5.00 5 0 4 1 0 0 0 0
...........................................................................................................ACCAAGAAACTCAACTCAACTTT......................................................................................................................... 23 0 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................................................................................................................GGTGGTCCTTGATCAGCGCAGCCT................................. 24 0 1 5.00 5 0 5 0 0 0 0 0
............................................................................................................................................................................................................................CGGCTCACCTGGGTTGTCAGCATT....... 24 0 1 4.00 4 2 2 0 0 0 0 0
...............................................................................................................................................................CGTCCTTACCAAATTCAAACAGGGAT.................................................................. 26 0 1 4.00 4 4 0 0 0 0 0 0
...........................................GCAAAATCCTCATCAGAATCAGTAT....................................................................................................................................................................................... 25 0 1 4.00 4 1 3 0 0 0 0 0
...................................................................................................................................CTCAACTCGGTGACGGCAGTCCCTGT.............................................................................................. 26 0 1 4.00 4 2 2 0 0 0 0 0
..........................................................................................................................................................................................................................GACGGCTCACCTGGGTTGTCAGCA......... 24 0 1 4.00 4 2 2 0 0 0 0 0
.............................................AAAATCCTCATCAGAATCAGTATC...................................................................................................................................................................................... 24 0 1 4.00 4 4 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGCTCACCTGGGTTGTCAGCATT....... 23 0 1 4.00 4 1 3 0 0 0 0 0
..........................................................................................................AACCAAGAAACTCAACTCAACTTT......................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0
.................................................................................................TCATTATCAAACCAAGAAACTCAACTC............................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................................ACAAACCAAGAAACTCAACTCAACTTT......................................................................................................................... 27 1 1 3.00 3 3 0 0 0 0 0 0
....................................................................................................................................................AGTCCCTGTGACGTCCTTACCAA................................................................................ 23 0 1 3.00 3 3 0 0 0 0 0 0
......................................CATAAGCAAAATCCTCATCAGAATCAGT......................................................................................................................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0 0
........................................................CAGAATCAGTATCTGATACATTGTG.......................................................................................................................................................................... 25 0 1 3.00 3 0 3 0 0 0 0 0
...........................................................................................................................................GGTGACGGCAGTCCCTGTGA............................................................................................ 20 0 1 3.00 3 0 3 0 0 0 0 0
.........................................................................................................AAACCAAGAAACTCAACTCAACTTT......................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0
................................................................................................ATCATTATCAAACCAAGAAACTCAACT................................................................................................................................ 27 1 1 3.00 3 3 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACGGCTCACCTGGGTTGTCAGCATT....... 26 0 1 3.00 3 1 2 0 0 0 0 0
............................................................ATCAGTATCTGATACATTGTGAAAAGTAA.................................................................................................................................................................. 29 0 1 3.00 3 3 0 0 0 0 0 0
...............................................................................................ATTCATTATCAAACCAAGAAACTCAACT................................................................................................................................ 28 1 1 3.00 3 3 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTGGGTTGTCAGCATTCTCGAGG 23 0 1 3.00 3 3 0 0 0 0 0 0
.....................................................................................................TATCAAACCAAGAAACTCAACTCAACTTT......................................................................................................................... 29 0 1 3.00 3 3 0 0 0 0 0 0
..............................................................CAGTATCTGATACATTGTGAAAAGTAA.................................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGCTCACCTGGGTTGTCAGCAT........ 23 1 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................................................................................................................................................TACGGCTCACCTGGGTTGTCAGCAT........ 25 1 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................................................................................................................GGTGGTCCTTGATCAGCGCAGC................................... 22 0 1 2.00 2 0 2 0 0 0 0 0
..................................................................................................................................................................CCTTACCAAATTCAAACAGGGATAGAG.............................................................. 27 0 1 2.00 2 1 1 0 0 0 0 0
..............................................................................................................................................GACGGCAGTCCCTGTGACGTCCTT..................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0
.....................................TAATAAGCAAAATCCTCATCAGAATCAGT......................................................................................................................................................................................... 29 1 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................TCAACTCAACTTTTCTCAACTCGGT............................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................................................................................................................TGGTCCTTGATCAGCGCAG.................................... 19 0 1 2.00 2 2 0 0 0 0 0 0
.........................TCGAAATCAAAATCATAAGCAAAAT......................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0
.........................................AAGCAAAATCCTCATCAGAATCAGT......................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................................TGACGTCCTTACCAAATTCAA.......................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0
......................................................................................................ATCAAACCAAGAAACTCAACT................................................................................................................................ 21 0 1 2.00 2 1 1 0 0 0 0 0
..................................................................................................CATTATCAAACCAAGAAACTCAA.................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................ATTATCAAACCAAGAAACTCAACTC............................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................GGTTTCATTATCAAACCAAGAAACTCAACT................................................................................................................................ 30 2 1 2.00 2 2 0 0 0 0 0 0
........................................................CAGAATCAGTATCTGATACATTGTGA......................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0
..........................CGAAATCAAAATCATAAGCAAAATCC....................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
...AGAAATGAGAAGGGGAAAAGAAT................................................................................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TCAAACCAAGAAACTCAACT................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0
................................................................................................................................................................................................GTGGTGGTCCTTGATCAGCGCAG.................................... 23 0 1 2.00 2 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................CGACGGCTCACCTGGGTTGTCAGCAT........ 26 1 1 2.00 2 0 0 2 0 0 0 0
...........................................................................................................................................................................................................................ACGGCTCACCTGGGTTGTCAGCATTC...... 26 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................CCATTATCAAACCAAGAAACTCAACT................................................................................................................................ 26 1 1 2.00 2 1 0 1 0 0 0 0
.............................................................ACAGTATCTGATACATTGTGAAAAGT.................................................................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................AAAAAGTATCTGATACATTGTGAAAAGT.................................................................................................................................................................... 28 2 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................CAAACCAAGAAACTCAACTCAACTT.......................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0
...............................................................................................GTTCATTATCAAACCAAGAAACTCAACT................................................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................AGTATCTGATACATTGTGAAAAGTAA.................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................GTGAAAAGTAAGAAGCGGTTCAT...................................................................................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0
.................................................................................................TCATTATCAAACCAAGAAACTCAAC................................................................................................................................. 25 0 1 2.00 2 1 1 0 0 0 0 0
.....................................................CATCAGAATCAGTATCTGATACATT............................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................................................................GCAGTCCCTGTGACGTCCTTACCAA................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................................................................................................CGGCTCACCTGGGTTGTCAGCA......... 22 0 1 2.00 2 0 2 0 0 0 0 0
......................................................................................................................................AACTCGGTGACGGCAGTCCCTGTGACG.......................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................AGTATCTGATACATTGTGAAAAGT.................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0
.........AAGAAGGGGAAAAGAATCGAAAT........................................................................................................................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
............................................CAAAATCCTCATCAGCATCAGTATCT..................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
................................CAAAATCATAAGCAAAATCCTCAT................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................GTGACGTCCTTACCAAATTC............................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................CCTGTGACGTCCTTACCAAATTCAAA......................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................GGTGGTGGTCCTTGATCAGCGCAGC................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACGGCTCCCCTGGGTTGTCAGCAT........ 25 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................GCAGTCCCTGTGACGTCCTTACCAAAT.............................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................TGACGGCTCACCGGGGTTGTCAGCAT........ 26 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................CAGTCCCTGTGACGTCCTTACCAAATT............................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................CATTATCAAACCACGAAACTCAACT................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................GTGGTGGTCCTTGATCAGCGCAGCCT................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................GTGGTCCTTGATCAGCGCAGC................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
............................................................ATCAGTATCTGATACATTGTGAA........................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................CCCTGTGACGTCCTTACCAAATTCA........................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................TCACCTGGGTTGTCAGCATTCTC.... 23 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCATTACCAAACCAAGAAACTCAACT................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................GTCCCTGTGACGTCCTTACCAAATT............................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
.........................................AAGCAAAATCCTCATCAGAATCAGTAT....................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................GAAGCGGTTCATTATCAAACCAAGAAAC...................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................TTCACCTGGGTTGTCAGCA......... 19 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................GTCCTTGATCAGCGCAGCCT................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCATTATCAAACCAAGAAATTCAACT................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................CGGCTCACCTGGGTTGTCAGC.......... 21 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................CTGACGGCTCACCTGGGTTGTCAGCA......... 26 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................CCTTACCAAATTCAAACAGGGATAGAGG............................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................AACCAAGAAACTCAACT................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................CCCTGTGACGTCCTTACCAAATTCAAA......................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................GGTGGTCCTTGATCAGCGCAGCC.................................. 23 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................AGTCCCTGTGACGTCCTTACCAAATT............................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
........................................................CAGAATCAGTATCTGATACATTGTGAA........................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................CCCTGTGACGTCCTTACCAAATT............................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................GGATAGAGGGGGTGGTGGTCCTTGAT............................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
.............................................AAAATCCTCATCAGAATCAGT......................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................GGTGGTGTTCCTTGATCAGCGCAG.................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACAGCTCACCTGGGTTGTCAGCAT........ 24 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................CCTTGATCAGCGTAGCCGG................................ 19 2 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................CTCACCTCGGTGACGGCAGTCCCTGT.............................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGACGGCTCACCTGGGTTGT.............. 20 0 1 1.00 1 0 1 0 0 0 0 0
................................CAAAATCATAAGCAAAATCCTCA.................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
..................................................CCTCATCAGAATCAGTATCTGATACA............................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................AGAATCAGTATCTGATACATTGT........................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................CCTTGATCAGCGCAGCCTGACGGCT.......................... 25 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................CGGCAGTCCCTGTGACGTCC....................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................TTTCTCAACTCGGTGACGGCAGTCCC................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................AGCGGTTCATTATCAAACCAAGAAAC...................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
....................................................TCATCAGAATCAGTATCTGATACAT.............................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................TCAGAATCAGTATCTGATACAT.............................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................GGTCCTTGATCAGCGCAGCCT................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................TCATTATCAAACCAAGAAACTCAA.................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCATTATCAAACCAAGAAACTCAACTG............................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACGGCTCACCTGGGTGGTCAGCAT........ 24 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACGACTCACCTGGGTTGTCAGCAT........ 25 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................TGAAAAGTAAGAAGCGGTTCATT..................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................CCTTACCAAATTCAAACAGGGATAG................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................GGATAGGGGGGGTGGTGGTCCTTGAT............................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................CATTATCAAACCAAGAACCTCAAGT................................................................................................................................ 25 2 1 1.00 1 0 0 1 0 0 0 0
...........GAAGGGGAAAAGAATCGAAAT........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................CAAACCAGGAAACTCAACTCAACTTT......................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................ACTTTTCTCAACTCGGTGACGGCAGT.................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................CGGTGACGGCAGTCCCTGTGACGT......................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................AAGCGGTTCATTATCAAACCAAGAAAC...................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................TGGTGGTCCTTGATCAGCGC...................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................CAGTATCTGATACATTGTGAAAAGTA................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TGCGGCTCACCTGGGTTGTCAGCAT........ 25 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................CAAACCAAGAAACTAAACTCAACTTT......................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................GTGACGTCCTTACCAAATTCAAA......................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................GTGGTCCTTGATCAGCGCAGCCT................................. 23 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACGGCTACACTGGGTTGTCAGCAT........ 24 3 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................GGTCCTTGATCAGCGCAG.................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................GGTTCATTATCAAACCAAGAAAC...................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................CTGTGACGTCCTTACCAAATT............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
...AGAAATGAGAAGGGGAAAAGAATC................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................TGACGGCTCACCTGGGTTGTCAGCA......... 25 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................CTGACGGCTCACCTGGGTTGTCAGCAT........ 27 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................GACGGCTCACCGGGGTTGTCAGCAT........ 25 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................GCGGTTCATTATCAAGCCAAGAAAC...................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACGGCCCACCTGGGTTGTCAGCAT........ 24 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAAGACGGCTCACCTGGGTTGTCAGCAT........ 28 3 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................CGGTTCATTATCAAACCAAGAAACG..................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................ACTCGGTGACGGCAGTCCCT................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................GGTGGTCCTTGATCAGCGC...................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TACGGCTTACCTGGGTTGTCAGCAT........ 25 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................CGGTTCATTATCAAGCCAAGAAAC...................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................GCTCACCTGGGTTGTCAGCA......... 20 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TCTCACGGCTCACCTGGGTTGTCAGCAT........ 28 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................TGTGAAAAGTAAGAAGCGGTTCA....................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................CAGTATCTGATACATTGTGAAAAG..................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................GCCGGCTCACCTGGGTTGTCAGCAT........ 25 1 1 1.00 1 1 0 0 0 0 0 0
.............AGGGGAAAAGAATCGAAAT........................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACGGCTCACCTGGGTTGTCAGCATC....... 25 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGACGGCTCACCTGGGTTGTCAGCATC....... 27 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................TCATTATCAAACCAAGAAACTCAACC................................................................................................................................ 26 1 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................................GGGGATAGAGGGGGTGGTGGT................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACGACTCACCTGGGTTGTCAGCAT........ 24 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGCTCACCTGGGTTGTCAGCA......... 21 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................CGGCTCACCGGGGTTGTCAGCAT........ 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................CATAAGCAAAATCCTCATCAGAATC............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................CGGTTCATTATCAAACCAAGAAACCG.................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................CAAACCAAGAAACTCAACT................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................GTGAAAAGTAAGAAGCGGTT......................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...............................TCAAAATCATAAGCAAAATCCTCAT................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................TCAGTATCTGATACATTGTGAAAAGT.................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
...AGAAATGAGAAGGGGAAAAGAA.................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................CCATTATCAAGCCAAGAAACTCAACT................................................................................................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCATTATCAAACCAAGAAACTTAACT................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
........................................................CAGAATCAGTATCTGATACATTGT........................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.........GAGAAGGGGAAAAGAATCGAAAT........................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................GATGGTGGTCATTGATCAGC........................................ 20 2 2 0.50 1 0 0 0 0 1 0 0
..........................................................................................................................................................TGTGACGTCTTTACGAAAATC............................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 1
................................................................................................................................TTTCTCATCTCGGTTACAG........................................................................................................ 19 3 20 0.30 6 0 0 0 0 0 6 0
...............................................................................................................................TTTTCTCATCTCGGTTACAG........................................................................................................ 20 3 12 0.25 3 0 1 0 1 0 1 0
.....AAATGAGAATGGGAAGAGAA.................................................................................................................................................................................................................................. 20 2 5 0.20 1 0 1 0 0 0 0 0
..............................................AAGTCCTCAGCAGAATCAC.......................................................................................................................................................................................... 19 3 6 0.17 1 0 1 0 0 0 0 0
...........GAAGGGGTAGAGAATCGA.............................................................................................................................................................................................................................. 18 2 7 0.14 1 0 1 0 0 0 0 0
........................................................................................................................................................................................TTTAGGGGGTGGTGGTCC................................................. 18 2 10 0.10 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................GGCTCAACTGGGTGGTAAG........... 19 3 10 0.10 1 0 1 0 0 0 0 0
..........................................................................................AAGCGCTTCATTATGAAAC.............................................................................................................................................. 19 2 14 0.07 1 0 1 0 0 0 0 0
..........ATAACGGGAAGAGAATCGAA............................................................................................................................................................................................................................. 20 3 16 0.06 1 0 0 0 0 1 0 0
...............................................................................................................................................................................AAACAGGTATAGCGAGGGT......................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group5:20950-21200 - dps_2922 TTCTCTTTACTCTTCCCCTTTTCTTA------GCTTTAGTTTTAGTATTCGTTTTAGGAGTAGTCTTAGTCATAGACTATGTAACAC--TTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTCGCC-AAGTAATAGTTT-----GGTTCTTTGAGTTG-AG-----TTGAAAAGAGT--TGA---------GCCAC-TGCCGTCAGGGACACTGCAG--G---AATGG-TTTAA----------GTTTGT-----------------------------------------CCCTA---------TCTC-CC------CCA-CCACCAGGAACTAGTCGCGTCGGACTGCCGAGTGGACCCAACAGTCGTAAGAGCTCC
droPer2 scaffold_58:397939-398189 + TTCTCTTTACTCTTCCCCTTTTCTTA------GCTTTAGTTTTAGTATTCGTTTTAGGAGTAGTCTTAGTCATAGACTATGTAACAC--TTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTCGCC-AAGTAATAGTTT-----GGTTCTTTGAGTTG-AG-----TTGAAAAGAGT--TGA---------GCCAC-TGCCGTCAGGGACACTGCAG--G---AATGG-TTTAA----------GTTTGT-----------------------------------------CCCTA---------TCTC-CC------CCA-CCACCAGGAACTAGTCGCGTCGGACTGCCGAGTGGACCCAACAGTCGTAAGAGCTCC
droWil2 scf2_1100000004729:953806-953995 - TGT-------------------------------------------------------------------------------AACAC--TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGAC-CAGTAGGAA-TTCTTTTAGTCATTTGAGTTG-AG-----TTTTAAAACAG-TTGA---------GTCT---------------ACTACAA-GA---AAA------------------GCTTGTATAACA-----------TATACATAGATCCCATTTACAA---TCTA---------CTTC-ACCCATTATCC-AAATTAGGTGCCAGTCGTGTTGGCCTGCCCAGTGGACCGAACAGCCGCAAGAGTTCC
droVir3 scaffold_13049:11184913-11185151 + dvi_19478 AGCATTT--CTCTGCCC-----------TTAGACCT------------------------TAGACTTGGTATTAGACCATGCAACACTCTCTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTTCGCC-CAGTAAACC-TTG----AATACATTGAGTTGGAGTTGGAGTTTCATTCAG-TTGA---------GCCACCTGCAGTCCATGACAATGCCG--A---GTTGT-ATTAATTTAATTTGTGCTTGT-----------------------------------------CGC-A---------TCCC-TT------GCT-GCTGCAGGTGCCAGCCGTGCTGGCCTGCCCAGTGGTCCCAACAGTCGCAAGAGCTCC
droMoj3 scaffold_6680:9650678-9650866 - T------------------------------------------------------------AGACTTAGTCGTAGACCATATACCCA--TCTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTCGTC-CAGTAAGCC-TTG----AGTACCTTGAGTTG-AA-----GTTTCATTCAG-TTGA---------GCGACCTTCAGTGCATGTCACGGCCG--A---ATCGT-ATTAAT----------T---------------------------------------------------------GGA----TC------ACC-TTCGCAGGTGCCAGCCGTGTCGGCCTGCCCAGTGGTCCCAATAGCCGCAAGAGCTCC
droGri2 scaffold_15110:8151637-8151844 - A-----------------------------------------------------------------------------------CAC--TCTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATTTCGCC-CAGTAAAAC-TTG----AATACTTTGAGTTG-AA-----GTTACATACAA-TTGA---------GCAACATTCATTTAATATCAATGCCG--A---ACTGT-ATTAAT----------TTTGT------TTTTGTGTTTTTCCT------GCTCGTTTCCCGTT----CGC--TTCCCGTTC-AC------TCC-TCTGCAGGTTCCAGTCGTGTTGGCCTGCCCAGTGGTCCCAACAGTCGGAAGAGCTCG
droAna3 scaffold_13337:9421703-9421863 + TTT-----------------------------------------------------------------------------------C--TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCATCACTGC-CAGTAATAC-TT-----GGTACTTTGAGTTG-AG-----TTCAAAAGCGT-CCGTC-----------------GTGTAAAG------TATAGA---CTGG-AG---------------CTAAT-----------------------------------------------C--CCTTGATTTTCC------GCCTCGACTAGGTGCCAGTCGCGTCGGCCTGCCAAGCGGTCCCAACAGCCGTAAGAGCTCT
droBip1 scf7180000396544:232787-232935 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGC-CAGTAATAC-TT-----AATACTTTGAGTTG-AG-----TTCGAAAGCGT-CCGAC-----------------ATGTAATG------TGTAGA---CTTG-AG---------------CTTAC-----------------------------------------------A--TCTTGATTTCCC------GCCTCGACTAGGTGCCAGTCGCGTTGGCCTGCCAAGCGGACCCAACAGCCGCAAGAGCTCC
droKik1 scf7180000302441:1042270-1042578 + TTCTCC-----------GTTTTCTAG------TCCTTAGT-----------------------CCTTAGTCCTAGACCA-GTAACAC--C-TTCATTCTCCGTCCTAAATAATAACAAACCGTGATGGTTAGCTCAAGGTGGACAGGTGTTAGCAGGGTAAAAGCC-TTACTAACACCTTTGTCC-----------------------------------------------------------CCT-TGGATAACTTGCCATCACTGCCCCGTAAAATCTT-----GGTTATTTGAGTTG-AG-----TTCGAAAGCAT-TGGATGCCTTTG------------------------TTCAAGAACCACC-CT-----------------------------------------------------------CT----GACCCTTATCATCT-CG------CCC-CGGATAGGTACCAGCCGGGTTGGCCTCCCCAGCGGACCCAACAGCCGAAAGAGCTCT
droFic1 scf7180000454105:987183-987318 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAAAAC-TT-----GGTAATTTGAGTTG-AG-----TTCGAAAGCGC-TTGAACCTTCAT------------------------TAG-GA---CAAC-CA-----------------------------------------------------------CT----AAC--TCCCGATCC-CC------GCC-TGAACAGGTGCCAGTCGCGTGGGACTCCCCAGCGGACCGAACAGCAGGAAGAGCTCC
droEle1 scf7180000491249:2714761-2714954 + GTATC--------------------------------AATTCCAGTAGTCGCCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATGAA-TGGTAGTTTTCCCATATCTGC-CAGTAATAC-TT-----GATACCTTGCGTTG-AG-----TTCGAAAGCGT-TCAAAGAAGTTGAG----------------------TGAGGA---AATGTCC-----------------------------------------------------------CT----AAC--GTGTGATTC-TC------ACCCAAAACAGGTTCCAGTCGCGTTGGATTGCCGAGCGGACCGAACAGCCGCAAGAGTTCC
droRho1 scf7180000758407:9981-10118 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAATAC-TT-----GATACTTTGAGTTG-AG-----TTCGAAAGCGTTTTGAAGGAGGTG------------------------TAAGGG---AATG-CT-----------------------------------------------------------CT----AAC--TTCTGATTC-TC------ACC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCCAATAGCCGCAAGAGTTCC
droBia1 scf7180000302428:9439941-9440148 - CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCT-GTAGTTTTTCTGAACCCTCTATTTAGGTAGCTTTAGACTAATTGGTAGTGTTCCCATCACTGC-CAGTAAATC-TT-----GATACTTTGAGTTG-AG-----TTCAAAAGCGT-TTAAAGATCGCA------------------------CGACAA---AATG-CC-----------------------------------------------------------CT----AAC--TTCTGATTT-TC------AAC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAACAGTCGCAAGAGTTCC
droTak1 scf7180000415857:473158-473296 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAATAC-TT-----GATACTTTGAGTTG-AG-----TTCAAAAGCATTTTGAAGATTGCT------------------------CAAGGA---AAGA-CT-----------------------------------------------------------CT----AAC--CTGTGATTT-CC------AACCTGTTCAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAATAGCCGCAAGAGTTCC
droEug1 scf7180000409466:386421-386726 - ATTTCTT--GTC----------TTAGTCCT-------AGT-----------------------CCTTAGTCC-----TTTATAACAC--CATTCATTCTATGCCCTACG--------------------------------------------------AAAGGCGTTCATTATGACCTTTGACCGTAGCAAGATATCCTTTTCT-GTAGTTTGCCTGTACCCTCTACATAGGTAGACATATAGTAAATGGTAGTTAACCCATCACTGC-CAGTAATAC-TT-----GAAACTTTGAGTTG-AG-----TTCAAAAGCGC-GT-AAGAATGCG------------------------TAGGGA---TGTG-CA-----------------------------------------------------------CT----AAC--TTCTGATTT-TC------ACC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAATAGCCGCAAGAGTTCC
dm3 chr3L:2659173-2659301 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----AATACATTGAGTTG-AG-----TTGAAAAGCTA-AAGAAGATAACG------------------------TAGGGG---AACG-CT-----------------------------------------------------------CT----AAC--TTAAGATTT-CC------ACA-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAGTAGCCGGAAGAGTTCC
droSim2 3l:2546508-2546636 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----AATACATTGAGTTG-AG-----TTGAAAAGCTA-AAGAAGACAACG------------------------TAGGGG---AACG-CT-----------------------------------------------------------CT----AAC--TTAAGATTT-CC------ACC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAGTAGCCGGAAAAGTTCC
droSec2 scaffold_2:2685081-2685209 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----GATACATTGAGTTG-AG-----TTGAAAAGCTA-AAGAAGACAACG------------------------TAGGAG---AACG-CT-----------------------------------------------------------CT----AAC--TTAAGATTT-CC------ACC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAGTAGCCGGAAGAGTTCC
droYak3 3L:9275698-9275825 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----GATACATTGAGTTG-AG-----TTGA-AAGCTG-AAGAAGATTACG------------------------TAGGCG---AATA-AT-----------------------------------------------------------CT----AAC--ATAAGATTT-CC------AAC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAGTAGCCGCAAGAGTTCC
droEre2 scaffold_4784:2678923-2679129 - TCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGGTAGTTAGCCTT-AGCCTCTTAGTAGATAGACATAGATTAATCGGTAG--TTCCCATCACTGT-CGGTATTAC-TT-----GATACATTGAGTTG-AG-----TTGAAAAGCTG-AAGAAGATTACG------------------------TGGGGG---AATA-CT-----------------------------------------------------------CT----AAC--TTAAGATTT-CC------ACC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGGCCGAGTAGCCGCAAGAGTTCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTCTCTTTACTCTTCCCCTTTTCTTA------GCTTTAGTTTTAGTATTCGTTTTAGGAGTAGTCTTAGTCATAGACTATGTAACAC--TTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTCGCC-AAGTAATAGTTT-----GGTTCTTTGAGTTG-AG-----TTGAAAAGAGT--TGA---------GCCAC-TGCCGTCAGGGACACTGCAG--G---AATGG-TTTAA----------GTTTGT-----------------------------------------CCCTA---------TCTC-CC------CCA-CCACCAGGAACTAGTCGCGTCGGACTGCCGAGTGGACCCAACAGTCGTAAGAGCTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-TT....................................................................................................................................................231204.00204010000020300
....................................................................................................................................................................................................................................................................................................TTTGAGTTG-AG-----TTGAAAAGAGT--........................................................................................................................................................................................................22120.002002000001800
....................................................................................................................................................................................................................................................................................................TTTGAGTTG-AG-----TTGAAAAGAGT--TGA---------............................................................................................................................................................................................25115.001502000001300
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-......................................................................................................................................................21113.001300000001300
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-TTTAA----------.......................................................................................................................................26113.001301000001200
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-TTTAA----------G......................................................................................................................................27111.001100000001100
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-T.....................................................................................................................................................22111.001100000001100
....................................................................................................................................................................................................................................................................................................TTTGAGTTG-AG-----TTGAAAAGAG...........................................................................................................................................................................................................21110.001000000001000
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-TTT...................................................................................................................................................24110.001000000001000
....................................................................................................................................................................................................................................................................................................................................................TGCCGTCAGGGACACTGCAG--G---AATGG-......................................................................................................................................................2615.0050000000500
.......................TTA------GCTTTAGTTTTAGTATTCGTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000500
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-TTA...................................................................................................................................................2415.0050000000500
....................................................................................................................................................................................................................................................................................................TTTGAGTTG-AG-----TTGAAAAGAGT--T.......................................................................................................................................................................................................2314.0040200000200
....................................................................................................................................................................................................................................................................................TAGTTT-----GGTTCTTTGAGTTG-AG-----T....................................................................................................................................................................................................................2314.0040000000400
............................................................................................TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTCGCC-AAGTAATAGTTT-----GGTT.......................................................................................................................................................................................................................................2814.0040000000400
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-TTTAA----------A......................................................................................................................................2714.0040000000400
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-TA....................................................................................................................................................2314.0040000000400
....................................................................................................................................................................................................................................................................................................TTTGAGTTG-AG-----TTGAAAAGAGT--TG......................................................................................................................................................................................................2414.0040100000300
....................................TAGTTTTAGTATTCGTTTTAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000300
...........................................................................................................................................................................................................................................................................................................TG-AG-----TTGAAAAGAGT--TGA---------GCCAC-TGC...................................................................................................................................................................................2613.0030000000300
....................................................................................................................................................................................................................................................................................................TTTGAGTTG-AG-----TTGAAAAGA............................................................................................................................................................................................................2013.0030000000300
...................................TTAGTTTTAGTATTCGTTTTAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000200
........................TA------GCTTTAGTTTTAGTATTCGTTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000200
..............................................................................................................................................................................................................................................................................................................................................................................AATGG-TTTAA----------GTTTGT-----------------------------------------CCCTA---------TC........................................................................2312.0020000000200
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-A.....................................................................................................................................................2212.0020000000200
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGGAACTAGTCGCGTCGGACTGC.............................2712.0020000000200
.........................................................................................................................................................................................................................................................................................................................................................TCAGGGACACTGCAG--G---AATGG-TTTA..................................................................................................................................................2512.0020000000200
........................TA------GCTTTAGTTTTAGTATTCGTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000200
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCGCGTCGGACTGCCGAGTGA......................2412.0020000000200
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAACTAGTCGCGTCGGACTGC.............................2512.0020000000200
...........................................................................................................................................................................................................................................................................................................TG-AG-----TTGAAAAGAGT--TGA---------GCC.........................................................................................................................................................................................2112.0020100000100
........................................................................................................................................................................................................................................................................................................................................................GTCAGGGACACTGCAG--G---AATGG-T.....................................................................................................................................................2312.0020000000200
.................................................CGTTTTAGGAGTAGTCTTAGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000200
...................................TTAGTTTTAGTATTCGTTTTAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000100
......................................................................................................................................................................................................................................................................................................................................................................................................TGT-----------------------------------------CCCTA---------TCTC-CC------CCA-CC.......................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................TGCAG--G---AATGG-TTTAA----------GTTTG..................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTTGT-----------------------------------------CCCTA---------TCTC-CC------CCA-CC.......................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................TGCCGTCAGGGACACTGCAG--G---AATGG-TT....................................................................................................................................................2811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTAGTCGCGTCGGAC................................2111.0010000000100
....................................................................................................................................................................................................................................................................................................TTTGAGTTG-AG-----TTGAAAAGAGT--TGA---------GC..........................................................................................................................................................................................2711.0010100000000
....................................................................................................................................................................................................................................................................................TAGTTT-----GGTTCTTTGAGTTG-............................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAGTCGCGTCGGACTGCCGA..........................2411.0010000000100
...........................................................................................................................................................................................................................................................................................................TG-AG-----TTGAAAAGAGT--TGA---------GCCAC-T.....................................................................................................................................................................................2411.0010100000000
.........................................................................................................................................................................................................................................................................................T-----GGTTCTTTGAGTTG-AG-----TTGAAAAG.............................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................................................................................................................................................................TGA---------GCCAC-TGCCGTCAGGGAC.........................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................TTGAGTTG-AG-----TTGAAAAGAG...........................................................................................................................................................................................................2011.0010100000000
................................................................................GTAACAC--TTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTCGCC-............................................................................................................................................................................................................................................................2211.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGAGTGGACCCAACGT.............2011.0010000100000
.................................................................................................................................................................................................................................................................................................................................................AC-TGCCGTCAGGGACACTGCAG--G---............................................................................................................................................................2311.0010000000100
........................................TTTAGTATTCGTTTTAGGAGTAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000100
.........................................................................................................................................................................................................................................................................................T-----GGTTCTTTGAGTTG-AG-----TTGAAAA..............................................................................................................................................................................................................2411.0010100000000
...................................................................................ACAC--TTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTCGCC-AAG.........................................................................................................................................................................................................................................................2211.0010100000000
.....................................AGTTTTAGTATTCGTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000100
...........................................................................................TTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTCGCC-AAGTAATAGTT.................................................................................................................................................................................................................................................2411.0010000000100
..........................................................................................................................................................................................................................................................................................................TTG-AG-----TTGAAAAGAGT--TGA---------G...........................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................TTTGAGTTG-AG-----TTGAAAAGAGT--TGA---------C...........................................................................................................................................................................................2611.0010010000000
..................................................................................................................................................................................................................................................................................................................................TGA---------GCCAC-TGCCGTCAGGGACACTGCA...................................................................................................................................................................2711.0010100000000
...................................TTAGTTTTAGTATTCGTTTTAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000100
.....................................................................................................................................................................................................................................................................................................................................................GCCGTCAGGGACACTGCAG--G---AATG........................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCGCGTCGGACTGCCGAG.........................2111.0010000000100
....................................................................................................................................................................................................................................................................................................TTTGAGTTG-AG-----TTGAAAAGAGT--TGA---------G...........................................................................................................................................................................................2611.0010100000000
....................................................................................................................................................................................................................................................................................................TTTGAGTTG-AG-----TTGAAAAGAGA--........................................................................................................................................................................................................2211.0010000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTA---------TCTC-CC------CCA-CCACCAGGAAC..............................................2511.0010100000000
...............................................................................TGTAACAC--TTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTCGCC-............................................................................................................................................................................................................................................................2311.0010100000000
...............................................................................TGTAACAC--TTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTCGC..............................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGACCCAACAGTCGTAAGAGC...2411.0010000000100
droPer2
TTCTCTTTACTCTTCCCCTTTTCTTA------GCTTTAGTTTTAGTATTCGTTTTAGGAGTAGTCTTAGTCATAGACTATGTAACAC--TTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTCGCC-AAGTAATAGTTT-----GGTTCTTTGAGTTG-AG-----TTGAAAAGAGT--TGA---------GCCAC-TGCCGTCAGGGACACTGCAG--G---AATGG-TTTAA----------GTTTGT-----------------------------------------CCCTA---------TCTC-CC------CCA-CCACCAGGAACTAGTCGCGTCGGACTGCCGAGTGGACCCAACAGTCGTAAGAGCTCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................CAGGGACACTGCAG--G---AATT........................................................................................................................................................1911.001010000
droWil2
TGT-------------------------------------------------------------------------------AACAC--TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGAC-CAGTAGGAA-TTCTTTTAGTCATTTGAGTTG-AG-----TTTTAAAACAG-TTGA---------GTCT---------------ACTACAA-GA---AAA------------------GCTTGTATAACA-----------TATACATAGATCCCATTTACAA---TCTA---------CTTC-ACCCATTATCC-AAATTAGGTGCCAGTCGTGTTGGCCTGCCCAGTGGACCGAACAGCCGCAAGAGTTCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AGCATTT--CTCTGCCC-----------TTAGACCT------------------------TAGACTTGGTATTAGACCATGCAACACTCTCTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTTCGCC-CAGTAAACC-TTG----AATACATTGAGTTGGAGTTGGAGTTTCATTCAG-TTGA---------GCCACCTGCAGTCCATGACAATGCCG--A---GTTGT-ATTAATTTAATTTGTGCTTGT-----------------------------------------CGC-A---------TCCC-TT------GCT-GCTGCAGGTGCCAGCCGTGCTGGCCTGCCCAGTGGTCCCAACAGTCGCAAGAGCTCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................AGTTGGAGTTTCATTCAG-TTG......................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................TATTAGACCATGCAACACTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCTTGT-----------------------------------------CGC-A---------TCCC-TT------.............................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AG-TTGA---------GCCACCTGCAGTCCA.............................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
....TTT--CTCTGCCC-----------TTAGACCT------------------------TA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
T------------------------------------------------------------AGACTTAGTCGTAGACCATATACCCA--TCTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTCGTC-CAGTAAGCC-TTG----AGTACCTTGAGTTG-AA-----GTTTCATTCAG-TTGA---------GCGACCTTCAGTGCATGTCACGGCCG--A---ATCGT-ATTAAT----------T---------------------------------------------------------GGA----TC------ACC-TTCGCAGGTGCCAGCCGTGTCGGCCTGCCCAGTGGTCCCAATAGCCGCAAGAGCTCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
A-----------------------------------------------------------------------------------CAC--TCTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATTTCGCC-CAGTAAAAC-TTG----AATACTTTGAGTTG-AA-----GTTACATACAA-TTGA---------GCAACATTCATTTAATATCAATGCCG--A---ACTGT-ATTAAT----------TTTGT------TTTTGTGTTTTTCCT------GCTCGTTTCCCGTT----CGC--TTCCCGTTC-AC------TCC-TCTGCAGGTTCCAGTCGTGTTGGCCTGCCCAGTGGTCCCAACAGTCGGAAGAGCTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TTT-----------------------------------------------------------------------------------C--TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCATCACTGC-CAGTAATAC-TT-----GGTACTTTGAGTTG-AG-----TTCAAAAGCGT-CCGTC-----------------GTGTAAAG------TATAGA---CTGG-AG---------------CTAAT-----------------------------------------------C--CCTTGATTTTCC------GCCTCGACTAGGTGCCAGTCGCGTCGGCCTGCCAAGCGGTCCCAACAGCCGTAAGAGCTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGC-CAGTAATAC-TT-----AATACTTTGAGTTG-AG-----TTCGAAAGCGT-CCGAC-----------------ATGTAATG------TGTAGA---CTTG-AG---------------CTTAC-----------------------------------------------A--TCTTGATTTCCC------GCCTCGACTAGGTGCCAGTCGCGTTGGCCTGCCAAGCGGACCCAACAGCCGCAAGAGCTCCSizeHit CountTotal NormTotal
No Reads
droKik1
TTCTCC-----------GTTTTCTAG------TCCTTAGT-----------------------CCTTAGTCCTAGACCA-GTAACAC--C-TTCATTCTCCGTCCTAAATAATAACAAACCGTGATGGTTAGCTCAAGGTGGACAGGTGTTAGCAGGGTAAAAGCC-TTACTAACACCTTTGTCC-----------------------------------------------------------CCT-TGGATAACTTGCCATCACTGCCCCGTAAAATCTT-----GGTTATTTGAGTTG-AG-----TTCGAAAGCAT-TGGATGCCTTTG------------------------TTCAAGAACCACC-CT-----------------------------------------------------------CT----GACCCTTATCATCT-CG------CCC-CGGATAGGTACCAGCCGGGTTGGCCTCCCCAGCGGACCCAACAGCCGAAAGAGCTCTSizeHit CountTotal NormTotal
No Reads
droFic1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAAAAC-TT-----GGTAATTTGAGTTG-AG-----TTCGAAAGCGC-TTGAACCTTCAT------------------------TAG-GA---CAAC-CA-----------------------------------------------------------CT----AAC--TCCCGATCC-CC------GCC-TGAACAGGTGCCAGTCGCGTGGGACTCCCCAGCGGACCGAACAGCAGGAAGAGCTCCSizeHit CountTotal NormTotal
No Reads
droEle1
GTATC--------------------------------AATTCCAGTAGTCGCCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATGAA-TGGTAGTTTTCCCATATCTGC-CAGTAATAC-TT-----GATACCTTGCGTTG-AG-----TTCGAAAGCGT-TCAAAGAAGTTGAG----------------------TGAGGA---AATGTCC-----------------------------------------------------------CT----AAC--GTGTGATTC-TC------ACCCAAAACAGGTTCCAGTCGCGTTGGATTGCCGAGCGGACCGAACAGCCGCAAGAGTTCCSizeHit CountTotal NormTotal
No Reads
droRho1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAATAC-TT-----GATACTTTGAGTTG-AG-----TTCGAAAGCGTTTTGAAGGAGGTG------------------------TAAGGG---AATG-CT-----------------------------------------------------------CT----AAC--TTCTGATTC-TC------ACC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCCAATAGCCGCAAGAGTTCCSizeHit CountTotal NormTotal
No Reads
droBia1
CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCT-GTAGTTTTTCTGAACCCTCTATTTAGGTAGCTTTAGACTAATTGGTAGTGTTCCCATCACTGC-CAGTAAATC-TT-----GATACTTTGAGTTG-AG-----TTCAAAAGCGT-TTAAAGATCGCA------------------------CGACAA---AATG-CC-----------------------------------------------------------CT----AAC--TTCTGATTT-TC------AAC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAACAGTCGCAAGAGTTCCSizeHit CountTotal NormTotal
No Reads
droTak1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAATAC-TT-----GATACTTTGAGTTG-AG-----TTCAAAAGCATTTTGAAGATTGCT------------------------CAAGGA---AAGA-CT-----------------------------------------------------------CT----AAC--CTGTGATTT-CC------AACCTGTTCAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAATAGCCGCAAGAGTTCCSizeHit CountTotal NormTotal
No Reads
droEug1
ATTTCTT--GTC----------TTAGTCCT-------AGT-----------------------CCTTAGTCC-----TTTATAACAC--CATTCATTCTATGCCCTACG--------------------------------------------------AAAGGCGTTCATTATGACCTTTGACCGTAGCAAGATATCCTTTTCT-GTAGTTTGCCTGTACCCTCTACATAGGTAGACATATAGTAAATGGTAGTTAACCCATCACTGC-CAGTAATAC-TT-----GAAACTTTGAGTTG-AG-----TTCAAAAGCGC-GT-AAGAATGCG------------------------TAGGGA---TGTG-CA-----------------------------------------------------------CT----AAC--TTCTGATTT-TC------ACC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAATAGCCGCAAGAGTTCCSizeHit CountTotal NormTotal
No Reads
dm3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----AATACATTGAGTTG-AG-----TTGAAAAGCTA-AAGAAGATAACG------------------------TAGGGG---AACG-CT-----------------------------------------------------------CT----AAC--TTAAGATTT-CC------ACA-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAGTAGCCGGAAGAGTTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-CC------ACA-TGAACAGGTGCCA............................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGGATTGCCGAGCGGAC....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CC------ACA-TGAACAGGTGCCAGTCGCGT.....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................TACATTGAGTTG-AG-----TTGAAAAGCTA-AA.......................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCGTTGGATTGCCGAGC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACCGAGTAGCCGGAAGA.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----AATACATTGAGTTG-AG-----TTGAAAAGCTA-AAGAAGACAACG------------------------TAGGGG---AACG-CT-----------------------------------------------------------CT----AAC--TTAAGATTT-CC------ACC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAGTAGCCGGAAAAGTTCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCGAGCGGACCGAGTAGC............2211.00100000100000000000
droSec2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----GATACATTGAGTTG-AG-----TTGAAAAGCTA-AAGAAGACAACG------------------------TAGGAG---AACG-CT-----------------------------------------------------------CT----AAC--TTAAGATTT-CC------ACC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAGTAGCCGGAAGAGTTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----GATACATTGAGTTG-AG-----TTGA-AAGCTG-AAGAAGATTACG------------------------TAGGCG---AATA-AT-----------------------------------------------------------CT----AAC--ATAAGATTT-CC------AAC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGACCGAGTAGCCGCAAGAGTTCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGGTAGTTAGCCTT-AGCCTCTTAGTAGATAGACATAGATTAATCGGTAG--TTCCCATCACTGT-CGGTATTAC-TT-----GATACATTGAGTTG-AG-----TTGAAAAGCTG-AAGAAGATTACG------------------------TGGGGG---AATA-CT-----------------------------------------------------------CT----AAC--TTAAGATTT-CC------ACC-TGAACAGGTGCCAGTCGCGTTGGATTGCCGAGCGGGCCGAGTAGCCGCAAGAGTTCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAGCGGGCCGAGTAGCCGC.........2311.0010001000

Generated: 05/18/2015 at 05:43 AM