ID:

dps_2910

 Coordinate:

XR_group3a:1194570-1194836 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-46.1 -45.9 -45.9

Flybase annnotation

CDS [Dpse\GA12452-cds]; exon [dpse_GLEANR_1453:4]; CDS [Dpse\GA12452-cds]; exon [dpse_GLEANR_1453:3]; intron [Dpse\GA12452-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey-
mature
  1. Unknown_singleton_1425:4421-4439 -
  2. XL_group1e:5869572-5869590 -
  3. dps_2709  XL_group1e:5881934-5881952 -
  4. XL_group1e:5882201-5882219 -
  5. dps_2910  XR_group3a:1194684-1194702 -
  6. 3:2054881-2054899 -
  7. 3:4864820-4864838 -
  8. 3:19668060-19668078 -
  9. 2:13139117-13139135 -
  10. XR_group8:3324551-3324569 -
  11. XR_group8:6933300-6933318 -
  12. 4_group3:10060249-10060267 -
  13. Unknown_group_134:6988-7006 -
  14. XR_group6:2222676-2222694 -
  15. XR_group6:3580827-3580845 -
  16. XR_group6:9567286-9567304 -
  17. XR_group6:12799341-12799359 -
  18. XL_group1a:4023633-4023651 -
  19. XL_group1a:5010505-5010523 -
  20. Unknown_singleton_182:1517-1535 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCCAGAGCGCAAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGAACGATGTATGATATGAGGCCGATGATGAGTATAAGATTGGGACAGCAAATGGAACCAGAGAGCGGGGCGGCAGACAGCGGCAATTTCAGCAAGCACAATACAATATCAATAGCAATAGCAACAGCAACAGCAACACTATCAACACCAGCAGCAGCAGCAGCAGCAATAATAGAATCCTAGATAGCAGCGACTACAATAAAATGACCAAAAATAGTTTTAGAGGTAGCATGAGATACAGTACCAATCCTCAATCAACATACTCATCATCACAGCAGCAGAAGCAGCAGCAGCAGCAGAAAGAGAAGCACCATCAGCAACATAA
**************************************************...............((((((((((((..((((((((..((...(((((((........))((.((.....)).))..)))))....))....(((..((((....((....))....((....))....(((((.......((.((....)).))........(((....))))))))......((((..((((((...........))))))...)))).....))))..)))....))).)))))...))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
 V112
male body		 M059
embryo
 SRR902010
ovaries
 SRR902011
testis
 M062
head
..........................................................................................................................................................................AACAACTACACTATCATCACC................................................................................................................................................................................ 21 3 1 23.00 23 23 0 0 0 0 0 0 0
...........................................................................................................................................................................ACAACTACACTATCATCACC................................................................................................................................................................................ 20 3 10 1.20 12 12 0 0 0 0 0 0 0
.........................................................................................................AGCGGGGCGACAGACAGC.................................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TATCGACACCAGCAGCAGCAGCA................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................AACAACTACACTATCATCAC................................................................................................................................................................................. 20 3 16 0.81 13 12 0 0 0 0 0 0 1
...........................................................................................................................................................................ACAACTACACTATCATCACCA............................................................................................................................................................................... 21 3 7 0.71 5 5 0 0 0 0 0 0 0
................................................................................................GAGCCAGAGAGCGGGGCGGCT.......................................................................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 1 0 0 0 0
...........................................................................................................TGGGGCGGGAGACAGCGGCGAT.............................................................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 1 0 0 0 0 0
..................................................................ATGATGAGTATCAGGTTG........................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0
.......................................................................................................................CAGCGGCAAATTCAGTAAG..................................................................................................................................................................................................................................... 19 2 4 0.25 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAAGAGAAGCACC............. 23 1 4 0.25 1 0 1 0 0 0 0 0 0
........CGCTAGCAGCAACAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................. 22 1 5 0.20 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................TCAACACTAGCAGCAGCAGCA................................................................................................................................................................... 21 1 6 0.17 1 1 0 0 0 0 0 0 0
.........GCAAGCAGCGACAGCAGCA................................................................................................................................................................................................................................................................................................................................................... 19 1 10 0.10 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................CAACACCAGCAGAAGCAGCAGCAGC.............................................................................................................................................................. 25 1 20 0.10 2 0 0 0 0 0 2 0 0
................................................................................................................................................................................................................................................................................................................................TAGAAGTAGCAGCAGCAGGAGAAA....................... 24 3 20 0.10 2 0 0 0 0 0 0 2 0
...................................................................................................................................................................................................................................................................................................................ATCATCGAAGCAGCAGAAGC........................................ 20 2 11 0.09 1 0 1 0 0 0 0 0 0
......................................................................................................................GCAGCGGCAATTTCGGCGAG..................................................................................................................................................................................................................................... 20 3 15 0.07 1 0 1 0 0 0 0 0 0
.............GCAGCAACAGCAGCAGCAGCAGCAGCAAC..................................................................................................................................................................................................................................................................................................................................... 29 0 19 0.05 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................CAACACCAGCAGCAGCAGC.................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
...................................................................TGGTGAGTGTAAGACTGGG......................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................CACCAGCATCAGCAGCAGCAGCAA............................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

AAGGTCTCGCGTTCGTCGTTGTCGTCGTCGTCGTCGTCGTTGTCTTGCTACATACTATACTCCGGCTACTACTCATATTCTAACCCTGTCGTTTACCTTGGTCTCTCGCCCCGCCGTCTGTCGCCGTTAAAGTCGTTCGTGTTATGTTATAGTTATCGTTATCGTTGTCGTTGTCGTTGTGATAGTTGTGGTCGTCGTCGTCGTCGTCGTTATTATCTTAGGATCTATCGTCGCTGATGTTATTTTACTGGTTTTTATCAAAATCTCCATCGTACTCTATGTCATGGTTAGGAGTTAGTTGTATGAGTAGTAGTGTCGTCGTCTTCGTCGTCGTCGTCGTCTTTCTCTTCGTGGTAGTCGTTGTATT
**************************************************...............((((((((((((..((((((((..((...(((((((........))((.((.....)).))..)))))....))....(((..((((....((....))....((....))....(((((.......((.((....)).))........(((....))))))))......((((..((((((...........))))))...)))).....))))..)))....))).)))))...))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M062
head
 SRR902010
ovaries
 GSM343916
embryo
 GSM444067
head
..........................................................................................................................................................................TTGTTGATGTGATAGTAGTGG................................................................................................................................................................................ 21 3 1 107.00 107 73 34 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................CTTCGTGGTAGTCATTGTTT. 20 2 3 9.00 27 0 0 27 0 0 0
...........................................................................................................................................................................TGTTGATGTGATAGTAGTGGT............................................................................................................................................................................... 21 3 7 4.14 29 7 22 0 0 0 0
..........................................................................................................................................................................TTGTTGATGTGATAGTAGTG................................................................................................................................................................................. 20 3 16 3.00 48 38 10 0 0 0 0
..........................................................................................................................................................................TTGTTGATGTGATAGTAGTGGT............................................................................................................................................................................... 22 3 1 3.00 3 0 3 0 0 0 0
...........................................................................................................................................................................TGTTGATGTGATAGTAGTGG................................................................................................................................................................................ 20 3 10 2.70 27 17 10 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................CTTCGTGGTAGTCATTGTGT. 20 2 2 1.00 2 0 0 2 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................TCTCTTCGTGGTAGTCGTTGTAT. 23 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................TCGTGGTAGTCATTGTAT. 18 1 2 1.00 2 0 0 2 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TTCGTGGTAGTCGTTGTGT. 19 1 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................ATGTCATGGTTAGGAGTTAGTTGT................................................................. 24 0 1 1.00 1 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................................................TTTCGTGGTAGTCATTGTAT. 20 2 2 1.00 2 0 0 2 0 0 0
...........................................................................................................................................................................................................................................................TCTTTATCAGAATCTCAATCGT.............................................................................................. 22 3 2 0.50 1 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................................................................CGTCGTGGTAGTCATTGTAT. 20 2 2 0.50 1 0 0 1 0 0 0
..GGTCTCGCGTGCGATGTTGT......................................................................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................ACTTGGTTCGGAGTTAGTTG.................................................................. 20 3 5 0.20 1 0 0 0 0 0 1
..................................................................................................................................................................................GTGAAAGTTGTGGCCGTCGA......................................................................................................................................................................... 20 3 11 0.18 2 2 0 0 0 0 0
..................................................................................AGCCTGTCGTTTACCTCGGTG........................................................................................................................................................................................................................................................................ 21 3 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................................................GTAGTTGTCGCTGTGATAG...................................................................................................................................................................................... 19 2 6 0.17 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TTCGTGGTAGTCATTGTCT. 19 2 6 0.17 1 0 0 1 0 0 0
.........................................................................................................................................................................GTTGTTGATGTGATAGTAGTG................................................................................................................................................................................. 21 3 8 0.13 1 0 1 0 0 0 0
.......................................................................................................................................................................CGGTTGTCGTTGTGATAGTTG................................................................................................................................................................................... 21 2 9 0.11 1 1 0 0 0 0 0
..................................................................................................................................................................................GTGAAAGTTGTGGCCGTC........................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0 0
..........GTTCGTCGTTGTCGTCGTC.................................................................................................................................................................................................................................................................................................................................................. 19 0 10 0.10 1 1 0 0 0 0 0
......................................................................................................................................................................................TAGTTGTGGTCGTCGTAATCGT................................................................................................................................................................... 22 2 10 0.10 1 1 0 0 0 0 0
..........................GACGTCTTAGTCGTTGTCTTGC............................................................................................................................................................................................................................................................................................................................... 22 3 12 0.08 1 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................................................................CTTCGTGGTAGTCATTGCTT. 20 3 17 0.06 1 0 0 1 0 0 0
.............................................................................................................................................................................TCTTTGTGATAGTTGGGGA............................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................................................................CTTCGTGGTAGTCATTTTTT. 20 3 20 0.05 1 0 0 1 0 0 0
...................................................................................................................................................................GTTGTCGTTGTCGTTGTG.......................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................................GTTGTGGTCGTCTTCGTCGTCG................................................................................................................................................................. 22 1 20 0.05 1 1 0 0 0 0 0
..............GTCGTTGTCGTCGTCGTCG.............................................................................................................................................................................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
.GGAACTCGCGTTCGTCGTT........................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................CTTCTTGGTAGTCATTGTTT. 20 3 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group3a:1194520-1194886 - dps_2910 TTCCAGAGCG-CAAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGAACGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ATGGAACCA---------------------------------------------------------------------GAGAGCGGGGCGGCAGACAGCGGCAATTTCAGCAAGCACA---ATACAATATCAATAGCAA---TAGC---AACAGC---------------------------AACAGCA---------------ACAC---------------TAT--------CAACACCA---------GCAGCAGCAGCAGCAGCAATA---ATA------------------GAATCCTAGATAGCAG---------CGACTACAATAAAATGACCAAAAATAGTTTTAGAGGTAGCATGAGATAC---------AGTACCAATC---CTCAATCAACATACTCATCATC------------ACAGCAGCAGAAGCAGCAGCAGCAG------CAGAAA---------GAGAAGCACCA---------TCAGCAACATAA
droPer2 scaffold_23:1215162-1215539 - dpe_1209 TTCCAGAGCG-CAAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGAACGATGTATGATATGAGGCCCGATGATGAGTATAAGATTTGGGACAGCAA------------------ATGGAACCA---------------------------------------------------------------------GAGAGCGGGGCGGCAGACAGCGGCAATTTCAGCAAGCACA---ATACAATATCAATAGCAA---CAGC---AACAGCA------A---------CAG---CAACAGCAACA------------------C---------------TAT--------CAACACCAGC------AGCAGCAGCAGCAGCAGCAGCAATAACA------------------GAATCCTAGATAGCAG---------CGACTACAATAAAATGACCAAAAATAGTTTTAGAGGTAGCATGAGATAC---------AGTACCAATC---CTCAATCAACATACTCATCATC------------ACAGCAGCAGAAGCAGCAGC---AG------CAGAAA---------GAGAAGCACCA---------TCAGCAACATAA
droWil2 scf2_1100000004540:132937-133339 - dwi_1393 TTCCCGAGCG----------------------TAAACAGCAGCAGAATGATGTATGATATAAGGC-TGATGATGAGTATAAAAT-TGGGATAACAAATGCAACAGCAGCAAC------AAGCA---------------------------------------------------------------------GACAACGAGGCAGCAGACAGCGACAATTTC-----------------T------AAGACAA---CAAC---AACAGCA------GCAGCAA------CAGCAAT----------CCAGCAACAGCAACAGCAATAACAACAACAACAATAATCA--CAACAGCAACACA------------------AGCAAT---CACA---------------ATCAAATCGTAGATAGCACTGCAACAACAAACTACAATAAAATGACCAAAAATAGTTTTAGAGGACAGATGAGATTTACCACACCAAACTCCA------CTCAATTGTCATACTCATCATCATTATCATCATCACAACAACAGCAACAG---C---AA------AAGCCGAAGCAGAAAC---------AGAGACAGCAACAGCAATATAG
droVir3 scaffold_13049:7802144-7802528 - dvi_18894 TACCAGAGCG-CAGCCAGCAG------------CTGCAGCAGCAGGATGAGGTATGATATAAGGC-TGATGATGAGTATAAGAT-TGGGACAGCAC------------------ACACAACGG---------------------------------------------CGCCGGCAGCGGAGGCAGTGAATCGGCAACGAGGCGGCAGACAGCGACAGTTTCTG---GCACA---AAACA------AAAGCAA---CATC---AACAGCA------G---------CAGCAGCAGCAGCAGCA---------------ACATAGATA---------AAAGCAAGCAC--------------------------ATCAACAACAACA---ACA------------------GAATCGTAGATAGCACCGCACCAACCAATTACAATAAAATGACCAAAAATAGTTTTAGAGGCAGCATGAGAT-----ACACAAACAATCAAT----CTCAATCGTCATACTCATCATC------------ACAGCAGCAACAGCAACAGC---AA------CAGCAG---------------CAGCAAC------AGCAACAATATAA
droMoj3 scaffold_6680:11451832-11452198 - TACCGGAGCG-CAGCCAACAGCAGCAGCAGCAGCAGCAGGAGCAGGCTGAGGTATGATATAAGGC-TGATGATGAGTATAAGAT-TGGGAAAACAC------------------ACACAACAA---------------------------------------------CG------GCGGAGGCAGCGGATCGGCAGCGAGGCAGCAGACAGCGACAGTTTCTG---GCACA---AAACA------AAAGCAG---CAGC---------A------G------------CAGCAGCAACAGCA---------------ACATAGATA---------AAAGCAAA--CACAACAGCAAT------------------AGCAACAACA---ACA------------------GAATCGTAGATAGCACCTCACCAACCAACTACAGTAAAATGACCAAAAATAGTTTTAGAGGCAGCATGAGATAC--AAA-------ACCAATCAATCTCAATCGTCATACTCATCATC------------ACAGCAACAGCAACAG---------------------------------------------------CAACAATTTAA
droGri2 scaffold_15110:6855400-6855763 - TACCGGAGCG-TAATCAACAG------------CAGCAGCAGCAGGATGAGGTATGATATAAGGC-TGATGATGAGTATAAGAT-TGGGACAGCGA----------------------AAC-----------------------------------------------------------------------GACAACGAGGTGGCAGACAGCGTCAGTTTGTG---GCACAGCAAAACA------CAAGGAACATCAGC---AACATCA------GCAACAACAGCAGCAGGAGCAGCAACA---------------ATATAGATAGCAA---------CCAGC-----ACAACAAT------------------AAGAACAGCA---ACA------------------GGATCGTAGATAGCACCGCAAAAATTAACTACAATAAAATGACCAAAAATAGTTTTAGAGGCAGCATGAGATACAC------A---AGCAATCCATCTCAGTCGTCATACTCATCATC------------ACAGCAGCAACAGCAACAACAGCAA---------------------C------------------AGCAACAATATAA
droAna3 scaffold_13337:13457239-13457590 + TCCCGGAGCG----------------------CCAACAGGCGGCTAATGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGCAGACAGCGGCAATTTC-----------------A------ACAGCAA---CAAC---AGC------------------------------AGCAGCAACATCAGCAACAGCAAC------------AGCAACAGCAATCACTCAACAACAATAT------------------AAGCAGCA---ACA------------------GAATCGTAGATAGCAG---------CAACTACAATAAAATGACCAAAAATAGTTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAACAGCAACAGC---AA------CAGCAA---------CAGCAGCA---TCAGCAGTATCAGCAACATAA
droBip1 scf7180000396589:558308-558659 - TCCCCGAGCG----------------------CCAACAGGCGGCTAATGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGCAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAAC---AGCAGCA------A---------------------CAGCAACATCAGCAACAGCAACATCAGCA---------ACAGCAATCACTCAACAACAATAT------------------AAGCAGCA---ACA------------------GAATCGTAGATAGCAG---------CAACTACAATAAAATGACCAAAAATAGTTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAACAGCAACAGC---AG------CAGCAA---------C---------ATCAGCAGTATCAGCAACATAA
droKik1 scf7180000302274:515144-515471 - TCCCCGAGAA----------------------GCAGCAGTCGTCGAGTGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCA------------GCAGCAAACGGAACCACAGC---------------------------------------------------------------ACAGCAGCGCGGAGGCAGACAGCGGCAATTTC-----------------A------AAAGGAGAAACAGC---AACAGC---------------------------AGCAGCA---------------------------------ACATCA---ACTCAAC---------------------------AGCAACA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCGTACTCATCATC------------ACAGCAGCAGCAGCAACAGG---AG------CAGCCA---------CAG------------CAGAAACAGCAACATAA
droFic1 scf7180000454065:475116-475464 - TCCCGGAGCG----------------------CCAGCAGCAGCTGAATGAAGTATGATATGAGGC-CGGTGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAAACAGCGGCAATTTC-----------------A------AAAAGAA---CAAC---AACAGCA------GCAACAG------CAGCAACAACAGCA---------------ACAACAACAGCAACAGCAACAACAACCACTAAACAGCAAC------ATCAGCGGAATAAATAGCAGCA---ATA------------------GAATTGTAGATAGCAG---------CAGCTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCTTCATACTCATCATC------------ACAACAACAGCAGA---------------------------------------------------AGCAGCAACATAA
droEle1 scf7180000491249:6079420-6079786 + TCCCAGAGCG----------------------CCAGCAGCAGAAGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACATCGGCAATTTC-----------------A------AAAGCAA---CAGC---AACAGCA------G---------CAGCAG---CAGCTGCA---------------ATATCAACAGCAGCAACATCAGCTACAACTCAACAGCAAC------ATCAGCGGAATTAATAGCAACA---ATA------------------GAATCGTAGATAGCAG---------CGACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAACAGC---AA------CAGCAA---------C---------ATCAGCATCAAAAGCAACATAA
droRho1 scf7180000779841:94293-94642 + TTTCAGATCTGGGAGCAACAGCAACATCAACAGCAACAGC------------------------------------------------------------------------------AACCACAGCGGAGCCTGATATTGATGGCATGTCGACAACAACACATGCAGCA----------------------GCCATGGCA-------ACAGCAACAACTAC-----------------A------TAAAAAA---CAGC---AGCAGCAACTGTAT---------CAGGAGCAACAGCAGCA---------------------------------GCATCAA-----CTGCAGCAACAGTACCATCAGCAACAGCATCAGCAGTA---CCAAAAACAACAGCAGCA---GCAAC---ACTAACAG---------CAACACCAACAGCAACACCAAAAGCAGCAGCAGCAACAGCAGCAGCAAT---ATACAGATTGCCAA-------------------------CA------------ACAGCAGCAACATCATCGGC---AG------CAGCAG---------C---AACAA------CATGAGTGACAACAACA
droBia1 scf7180000302428:1095420-1095774 + TCCCAGAGCG----------------------CCAGCAGCAGCTGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGC---AACAGCA------G---------C---------AGCAGCA---------------------------------ACATCAGGCACTCAACAGCAACTCGGCAATCGTCGGAATCAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAATAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAACAGCAGCAACAGCAG---------------------CAGCAGCAACATCGGAATCAGAAGCAACATAA
droTak1 scf7180000415862:231863-232217 - TCCCGGAGCG----------------------CCAGCAGCAGCAGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------CACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAACCAA---CAGC---CACAGC------------------------AACAGCAGCA---------------------------------ACATCAAGCAATCAACAGCAACTCGGCAATCAGCGGAATCAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAATAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAGCAACAGCAA---------------------CAGCAGCAACATCAGAACCAGAAGCAACATAA
droEug1 scf7180000409524:487186-487507 + TCCCAGAGCG----------------------CCAGCAGCAGCTGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAACAA---CAGC---A---GC---------------------------AACAGCA---------------------------------ACATCAAGCACTCAACAGCAAC------ATCAGCGGAATTAATAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAACAGCAACAGCAGC---AG------C---------------------------------AGCAGCAACATAA
dm3 chr3L:8153940-8154300 - TCCCAGAGCG----------------------CCAGCAGCAGCTGAATGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGGGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGC---AACAGAA------G---------CAG---CAACAGCAGCA---------------------------------ACATCAAGCACTCAACAGCAACACGGCAATCGGCGGAATCAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CCCAATCGTCATACTCATCATC------------ACAGCAGCAACAGCAGCAGC---AACAACAACAA------------CAGAAGCAACATC------AGAAGCAACATAA
droSim2 3l:7963658-7964015 - dsi_20976 TCCCAGAGCG----------------------CCAGCAGCAGCTGAATGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGC---AACAGCA------G---------CAGCAGCAACAGCAGCA---------------------------------ACATCAAGCACTCAACAGCAACACGGCAATCGGCGGAATAAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CCCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAACAAC---AA------CAA------------CAGAAGCAACATC------AGAAGCAACATAA
droSec2 scaffold_0:440983-441349 - TCCCAGAGCG----------------------CCAGCAGCAGCTGAATGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGC---AACAGCA------G---------CAGCAGAAACAGCAGCA---------------------------------ACATCAAGCACTCAACAGCAACACGGCAATCGGCGGGATAAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CCCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAACAACAGCAACAACAACAA------------CAGAAGCAACATC------AGAAGCAACATAA
droYak3 3L:8742441-8742816 - TCCCAGAGCG----------------------CCAGCAGCAGCAGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGCACCAACAGCA------G---------CAGCAGCAACTG------------------CAACAGCAGCAAC---AGCAACATCAAGCAATCAACAGCAACACGGCAATCGGCGGAATCAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAACAGC---AA------CAGCAA---------CACAAGCAACATC------AGAAGCAACACAA
droEre2 scaffold_4784:3208791-3209127 + TCCCAGAGCG----------------------CCAGCAGCAGCCGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGC------------------------------------AGCAGCA---------------------------------ACATCAAGCACTCAACAGCAACACGGCAATCGGCGGAATCAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAACAAC---AA------C---------------ACAAGCAACAGC------AGAAGCAACACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTCCAGAGCG-CAAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGAACGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ATGGAACCA---------------------------------------------------------------------GAGAGCGGGGCGGCAGACAGCGGCAATTTCAGCAAGCACA---ATACAATATCAATAGCAA---TAGC---AACAGC---------------------------AACAGCA---------------ACAC---------------TAT--------CAACACCA---------GCAGCAGCAGCAGCAGCAATA---ATA------------------GAATCCTAGATAGCAG---------CGACTACAATAAAATGACCAAAAATAGTTTTAGAGGTAGCATGAGATAC---------AGTACCAATC---CTCAATCAACATACTCATCATC------------ACAGCAGCAGAAGCAGCAGCAGCAG------CAGAAA---------GAGAAGCACCA---------TCAGCAACATAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............GCAGCAACAGCAGCAGCAGCAGCAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29190.0510010000000
............................................................................................................................................................................................................................................................................................................................................................CAACACCA---------GCAGCAGCAGC..................................................................................................................................................................................................................................................19200.0510100000000
droPer2
TTCCAGAGCG-CAAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGAACGATGTATGATATGAGGCCCGATGATGAGTATAAGATTTGGGACAGCAA------------------ATGGAACCA---------------------------------------------------------------------GAGAGCGGGGCGGCAGACAGCGGCAATTTCAGCAAGCACA---ATACAATATCAATAGCAA---CAGC---AACAGCA------A---------CAG---CAACAGCAACA------------------C---------------TAT--------CAACACCAGC------AGCAGCAGCAGCAGCAGCAGCAATAACA------------------GAATCCTAGATAGCAG---------CGACTACAATAAAATGACCAAAAATAGTTTTAGAGGTAGCATGAGATAC---------AGTACCAATC---CTCAATCAACATACTCATCATC------------ACAGCAGCAGAAGCAGCAGC---AG------CAGAAA---------GAGAAGCACCA---------TCAGCAACATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................AGCAGCAGCAGCAGCAACAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.061001000
.....................................................................................................................................................................................................................................................AATAGCAA---CAGC---AACAGCA------A---------C...........................................................................................................................................................................................................................................................................................................................................21190.051001000
droWil2
TTCCCGAGCG----------------------TAAACAGCAGCAGAATGATGTATGATATAAGGC-TGATGATGAGTATAAAAT-TGGGATAACAAATGCAACAGCAGCAAC------AAGCA---------------------------------------------------------------------GACAACGAGGCAGCAGACAGCGACAATTTC-----------------T------AAGACAA---CAAC---AACAGCA------GCAGCAA------CAGCAAT----------CCAGCAACAGCAACAGCAATAACAACAACAACAATAATCA--CAACAGCAACACA------------------AGCAAT---CACA---------------ATCAAATCGTAGATAGCACTGCAACAACAAACTACAATAAAATGACCAAAAATAGTTTTAGAGGACAGATGAGATTTACCACACCAAACTCCA------CTCAATTGTCATACTCATCATCATTATCATCATCACAACAACAGCAACAG---C---AA------AAGCCGAAGCAGAAAC---------AGAGACAGCAACAGCAATATAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................GACAA---CAAC---AACAGCA------GCAGC.................................................................................................................................................................................................................................................................................................................................................21120.08101000
..........................................................................................................................................................................................................................................................CAA---CAAC---AACAGCA------GCAGCAA------.........................................................................................................................................................................................................................................................................................................................................21200.05101000
droVir3
TACCAGAGCG-CAGCCAGCAG------------CTGCAGCAGCAGGATGAGGTATGATATAAGGC-TGATGATGAGTATAAGAT-TGGGACAGCAC------------------ACACAACGG---------------------------------------------CGCCGGCAGCGGAGGCAGTGAATCGGCAACGAGGCGGCAGACAGCGACAGTTTCTG---GCACA---AAACA------AAAGCAA---CATC---AACAGCA------G---------CAGCAGCAGCAGCAGCA---------------ACATAGATA---------AAAGCAAGCAC--------------------------ATCAACAACAACA---ACA------------------GAATCGTAGATAGCACCGCACCAACCAATTACAATAAAATGACCAAAAATAGTTTTAGAGGCAGCATGAGAT-----ACACAAACAATCAAT----CTCAATCGTCATACTCATCATC------------ACAGCAGCAACAGCAACAGC---AA------CAGCAG---------------CAGCAAC------AGCAACAATATAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................AACA------AAAGCAA---CATC---AACAG..............................................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................AACA------AAAGCAA---CATC---AACA...............................................................................................................................................................................................................................................................................................................................................................1950.201000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACA---ACA------------------GAATC...........................................................................................................................................................................................................1960.171001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ACAGCA------G---------CAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................18200.153003000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AA---CATC---AACAGCA------G---------CAGCAGCA....................................................................................................................................................................................................................................................................................................................................22200.102001000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................AA---CATC---AACAGCA------G---------CAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................28130.081000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------ACAGCAGCAACAGCAACAGC---A......................................................22160.061001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AACAGCA------G---------CAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAGC---AA------CAGCAG---------------C.........................23200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---AA------CAGCAG---------------CAGCA.....................19200.051000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CATC---AACAGCA------G---------CAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAGCAG---------------CAGCAAC------AGCAACA......22200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AA------CAGCAG---------------CAGCAAC------AGC..........22200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AA------CAGCAG---------------CAGCAAC------AGC..........20200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ATC---AACAGCA------G---------CAGCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GCAA---CATC---AACAGCA------G---------CAGC........................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------------CAGCAAC------AGCAACAAT....19200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CAA---CATC---AACAGCA------G---------CAGCAGC.....................................................................................................................................................................................................................................................................................................................................22200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
TACCGGAGCG-CAGCCAACAGCAGCAGCAGCAGCAGCAGGAGCAGGCTGAGGTATGATATAAGGC-TGATGATGAGTATAAGAT-TGGGAAAACAC------------------ACACAACAA---------------------------------------------CG------GCGGAGGCAGCGGATCGGCAGCGAGGCAGCAGACAGCGACAGTTTCTG---GCACA---AAACA------AAAGCAG---CAGC---------A------G------------CAGCAGCAACAGCA---------------ACATAGATA---------AAAGCAAA--CACAACAGCAAT------------------AGCAACAACA---ACA------------------GAATCGTAGATAGCACCTCACCAACCAACTACAGTAAAATGACCAAAAATAGTTTTAGAGGCAGCATGAGATAC--AAA-------ACCAATCAATCTCAATCGTCATACTCATCATC------------ACAGCAACAGCAACAG---------------------------------------------------CAACAATTTAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAG---------------------------------------------------CAACAAT....21200.051100000
droGri2
TACCGGAGCG-TAATCAACAG------------CAGCAGCAGCAGGATGAGGTATGATATAAGGC-TGATGATGAGTATAAGAT-TGGGACAGCGA----------------------AAC-----------------------------------------------------------------------GACAACGAGGTGGCAGACAGCGTCAGTTTGTG---GCACAGCAAAACA------CAAGGAACATCAGC---AACATCA------GCAACAACAGCAGCAGGAGCAGCAACA---------------ATATAGATAGCAA---------CCAGC-----ACAACAAT------------------AAGAACAGCA---ACA------------------GGATCGTAGATAGCACCGCAAAAATTAACTACAATAAAATGACCAAAAATAGTTTTAGAGGCAGCATGAGATACAC------A---AGCAATCCATCTCAGTCGTCATACTCATCATC------------ACAGCAGCAACAGCAACAACAGCAA---------------------C------------------AGCAACAATATAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................AACAACAGCAGCAGGAGCA.................................................................................................................................................................................................................................................................................................................................19150.07101
.........................................................................................................................................................................................................................................................................................AACAGCAGCAGGAGCAGCA..............................................................................................................................................................................................................................................................................................................................19200.05101
droAna3
TCCCGGAGCG----------------------CCAACAGGCGGCTAATGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGCAGACAGCGGCAATTTC-----------------A------ACAGCAA---CAAC---AGC------------------------------AGCAGCAACATCAGCAACAGCAAC------------AGCAACAGCAATCACTCAACAACAATAT------------------AAGCAGCA---ACA------------------GAATCGTAGATAGCAG---------CAACTACAATAAAATGACCAAAAATAGTTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAACAGCAACAGC---AA------CAGCAA---------CAGCAGCA---TCAGCAGTATCAGCAACATAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................GCAACATCAGCAACAGCAAC------------AGC...........................................................................................................................................................................................................................................................................................2380.131010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGC---AA------CAGCAA---------CAGCAGC.........................23200.102020000
.......................................................................................................................................................................................................................................................CAGCAA---CAAC---AGC------------------------------AGCAGC............................................................................................................................................................................................................................................................................................................................19200.102020000
...............................................................................................................................................................................................................................................A------ACAGCAA---CAAC---AGC------------------------------AGCAGCAACA........................................................................................................................................................................................................................................................................................................................25120.081000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AA------CAGCAA---------CAGCAGCA---T....................18120.081000001
..........................................................................................................................................................................................................................................................................................................CAGCAACATCAGCAACAGCAAC------------..............................................................................................................................................................................................................................................................................................22140.071010000
..................................................................................................................................................................................................................................................................................................................TCAGCAACAGCAAC------------AGCAAC........................................................................................................................................................................................................................................................................................20170.061000100
.........................................................................................................................................................................................................................................................GCAA---CAAC---AGC------------------------------AGCAGCAAC.........................................................................................................................................................................................................................................................................................................................20200.051001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGC---AA------CAGCAA---------CAGCAGC.........................28200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGC---AA------CAGCAA---------CAGCAGCA---.....................26200.051010000
.............................................................................................................................................................................................................................................................................................................CAACATCAGCAACAGCAAC------------A.............................................................................................................................................................................................................................................................................................20200.051010000
............................................................................................................................................................................................................................................................A---CAAC---AGC------------------------------AGCAGCAACA........................................................................................................................................................................................................................................................................................................................18200.051010000
......................................................................................................................................................................................................................................................ACAGCAA---CAAC---AGC------------------------------AGCAGC............................................................................................................................................................................................................................................................................................................................20200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---AA------CAGCAA---------CAGCAGC.........................20200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGC---AA------CAGCAA---------CAG.............................24200.051010000
...........................................................................................................................................................................................................................................................AA---CAAC---AGC------------------------------AGCAGCAACA........................................................................................................................................................................................................................................................................................................................19200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGC---AA------CAGCAA---------CAGC............................24200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---AA------CAGCAA---------CAGCAGCA---.....................22200.051010000
droBip1
TCCCCGAGCG----------------------CCAACAGGCGGCTAATGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGCAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAAC---AGCAGCA------A---------------------CAGCAACATCAGCAACAGCAACATCAGCA---------ACAGCAATCACTCAACAACAATAT------------------AAGCAGCA---ACA------------------GAATCGTAGATAGCAG---------CAACTACAATAAAATGACCAAAAATAGTTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAACAGCAACAGC---AG------CAGCAA---------C---------ATCAGCAGTATCAGCAACATAASizeHit CountTotal NormTotal
No Reads
droKik1
TCCCCGAGAA----------------------GCAGCAGTCGTCGAGTGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCA------------GCAGCAAACGGAACCACAGC---------------------------------------------------------------ACAGCAGCGCGGAGGCAGACAGCGGCAATTTC-----------------A------AAAGGAGAAACAGC---AACAGC---------------------------AGCAGCA---------------------------------ACATCA---ACTCAAC---------------------------AGCAACA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCGTACTCATCATC------------ACAGCAGCAGCAGCAACAGG---AG------CAGCCA---------CAG------------CAGAAACAGCAACATAASizeHit CountTotal NormTotal
No Reads
droFic1
TCCCGGAGCG----------------------CCAGCAGCAGCTGAATGAAGTATGATATGAGGC-CGGTGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAAACAGCGGCAATTTC-----------------A------AAAAGAA---CAAC---AACAGCA------GCAACAG------CAGCAACAACAGCA---------------ACAACAACAGCAACAGCAACAACAACCACTAAACAGCAAC------ATCAGCGGAATAAATAGCAGCA---ATA------------------GAATTGTAGATAGCAG---------CAGCTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCTTCATACTCATCATC------------ACAACAACAGCAGA---------------------------------------------------AGCAGCAACATAASizeHit CountTotal NormTotal
No Reads
droEle1
TCCCAGAGCG----------------------CCAGCAGCAGAAGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACATCGGCAATTTC-----------------A------AAAGCAA---CAGC---AACAGCA------G---------CAGCAG---CAGCTGCA---------------ATATCAACAGCAGCAACATCAGCTACAACTCAACAGCAAC------ATCAGCGGAATTAATAGCAACA---ATA------------------GAATCGTAGATAGCAG---------CGACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAACAGC---AA------CAGCAA---------C---------ATCAGCATCAAAAGCAACATAASizeHit CountTotal NormTotal
No Reads
droRho1
TTTCAGATCTGGGAGCAACAGCAACATCAACAGCAACAGC------------------------------------------------------------------------------AACCACAGCGGAGCCTGATATTGATGGCATGTCGACAACAACACATGCAGCA----------------------GCCATGGCA-------ACAGCAACAACTAC-----------------A------TAAAAAA---CAGC---AGCAGCAACTGTAT---------CAGGAGCAACAGCAGCA---------------------------------GCATCAA-----CTGCAGCAACAGTACCATCAGCAACAGCATCAGCAGTA---CCAAAAACAACAGCAGCA---GCAAC---ACTAACAG---------CAACACCAACAGCAACACCAAAAGCAGCAGCAGCAACAGCAGCAGCAAT---ATACAGATTGCCAA-------------------------CA------------ACAGCAGCAACATCATCGGC---AG------CAGCAG---------C---AACAA------CATGAGTGACAACAACASizeHit CountTotal NormTotal
No Reads
droBia1
TCCCAGAGCG----------------------CCAGCAGCAGCTGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGC---AACAGCA------G---------C---------AGCAGCA---------------------------------ACATCAGGCACTCAACAGCAACTCGGCAATCGTCGGAATCAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAATAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAACAGCAGCAACAGCAG---------------------CAGCAGCAACATCGGAATCAGAAGCAACATAASizeHit CountTotal NormTotal
No Reads
droTak1
TCCCGGAGCG----------------------CCAGCAGCAGCAGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------CACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAACCAA---CAGC---CACAGC------------------------AACAGCAGCA---------------------------------ACATCAAGCAATCAACAGCAACTCGGCAATCAGCGGAATCAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAATAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAGCAACAGCAA---------------------CAGCAGCAACATCAGAACCAGAAGCAACATAASizeHit CountTotal NormTotal
No Reads
droEug1
TCCCAGAGCG----------------------CCAGCAGCAGCTGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAACAA---CAGC---A---GC---------------------------AACAGCA---------------------------------ACATCAAGCACTCAACAGCAAC------ATCAGCGGAATTAATAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAACAGCAACAGCAGC---AG------C---------------------------------AGCAGCAACATAASizeHit CountTotal NormTotal
No Reads
dm3
TCCCAGAGCG----------------------CCAGCAGCAGCTGAATGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGGGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGC---AACAGAA------G---------CAG---CAACAGCAGCA---------------------------------ACATCAAGCACTCAACAGCAACACGGCAATCGGCGGAATCAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CCCAATCGTCATACTCATCATC------------ACAGCAGCAACAGCAGCAGC---AACAACAACAA------------CAGAAGCAACATC------AGAAGCAACATAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................CTCAACAGCAACACGGCAATCGGC........................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCATC------------ACAGCAGCG.....................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CAGCGGGGCGGAAGACAGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---AACAACAACAA------------CAGAA...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC---AACAACAACA.............................................21200.601200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000
........................................................................................................................................................................................................................................................AGCAA---CAGC---AACAGAA------G---------CAG---C.....................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CAGC---AACAGAA------G---------CAG---CAAC..................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA------------CAGAAGCAACA.....................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAA------------CAGAAGCAACA.....................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGC---AACAACAACAA------------C...............................2670.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CAGAA------G---------CAG---CAACAGCAGCA---------------------------------..........................................................................................................................................................................................................................................................................................20110.2730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000100000000000000
..........................................................................................................................................................................................................................................................................AGAA------G---------CAG---CAACAGCAGCA---------------------------------AC........................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA------------CAGAAGCAACAC....................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCCCAGAGCG----------------------CCAGCAGCAGCTGAATGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGC---AACAGCA------G---------CAGCAGCAACAGCAGCA---------------------------------ACATCAAGCACTCAACAGCAACACGGCAATCGGCGGAATAAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CCCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAACAAC---AA------CAA------------CAGAAGCAACATC------AGAAGCAACATAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCATC------------ACAGCAGC......................................................................1612.00200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCATC------------ACAGCAG.......................................................................1511.00100000000001000000
.......................................................................................................................ACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATC------------ACAGCAGC......................................................................1520.50100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATC------------ACAGCAGCG.....................................................................16110.18200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAA------------CAGAAGCAACA.....................16200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATC------------ACAGCAGCG.....................................................................15200.05100000000001000000
droSec2
TCCCAGAGCG----------------------CCAGCAGCAGCTGAATGATGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGC---AACAGCA------G---------CAGCAGAAACAGCAGCA---------------------------------ACATCAAGCACTCAACAGCAACACGGCAATCGGCGGGATAAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CCCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAACAACAGCAACAACAACAA------------CAGAAGCAACATC------AGAAGCAACATAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................GC---AACAGCA------G---------CAGCAGAAA...................................................................................................................................................................................................................................................................................................................................1930.3311000
droYak3
TCCCAGAGCG----------------------CCAGCAGCAGCAGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGCACCAACAGCA------G---------CAGCAGCAACTG------------------CAACAGCAGCAAC---AGCAACATCAAGCAATCAACAGCAACACGGCAATCGGCGGAATCAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAACAGC---AA------CAGCAA---------CACAAGCAACATC------AGAAGCAACACAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................GCAGCAACTG------------------CAACAGCAGC....................................................................................................................................................................................................................................................................................................20120.08101000000000
...................................................................................................................................................................................................................................................................CACCAACAGCA------G---------CAGCAGCA....................................................................................................................................................................................................................................................................................................................................20200.05101000000000
droEre2
TCCCAGAGCG----------------------CCAGCAGCAGCCGAATGAAGTATGATATGAGGC-CGATGATGAGTATAAGAT-TGGGACAGCAA------------------ACGGAACCA---------------------------------------------------------------------GACAGCGCGGCGGAAGACAGCGGCAATTTC-----------------A------AAAGCAA---CAGC------------------------------------AGCAGCA---------------------------------ACATCAAGCACTCAACAGCAACACGGCAATCGGCGGAATCAACAGCAGCA---ATA------------------GAATCGTAGATAGCAG---------CAACTACAGTAAAATGACCAAAAATAGCTTTAGAGGTAGCATGAGATTTACCACACCAAGTACCAATC---CTCAATCGTCATACTCATCATC------------ACAGCAGCAGCAGCAACAAC---AA------C---------------ACAAGCAACAGC------AGAAGCAACACAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................A---CAGC------------------------------------AGCAGCA---------------------------------ACATCA....................................................................................................................................................................................................................................................................................18200.0510000100

Generated: 05/18/2015 at 05:47 AM