ID:

dps_2900

 Coordinate:

XR_group3a:974394-974544 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.0 -22.6 -22.5

Flybase annnotation

CDS [Dpse\GA14293-cds]; exon [dpse_GLEANR_1561:6]; intron [Dpse\GA14293-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATACTTAACAAATGATCTGAGAAGATCTTTCTGATCTTTCCAAACCAAGGAAAAACGAATCCAAGTTGGCAGCACTCTAGAGGCAGAGCTCTGCCATATCCCATATATACCATATCCCTCCCCTCCTTGTGTGTTGCATCTGCCCCTTTTGATTCTAACAACCTCCCCCCCCCCTATCGCTCTCTTGTTGTTGTCTGTAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAAGACGACGAAGAAGA
**************************************************.......(((((.(((..(((((.........(((((....)))))......((((((....................))))))......)))))..))).)))))(((((((........................))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902012
CNS imaginal disc
 GSM343916
embryo
........................................................................................................................................................................................................................GACGAGGAGCTAGAGGAGGAAG............. 22 0 1 1.00 1 1 0 0
.........................................................GAATCCAAGTTGGCAGCACTCTAGAGGC...................................................................................................................................................................... 28 0 1 1.00 1 0 1 0
...............................................................................................................................................................................................................GATGAGGCCGACGAGGAGCTAG...................... 22 0 1 1.00 1 1 0 0
AATACTTAACAAATGATCTGAGAAGAT................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................................................GAGGAGGAAGATGACGAA..... 18 1 8 0.25 2 2 0 0
.......................CGGTCTTTCTGAGCTTTCCA................................................................................................................................................................................................................ 20 3 5 0.20 1 1 0 0
.....................................................................................................................................................................................................................................AGGAGGAAGATGACGAAG.... 18 1 6 0.17 1 1 0 0
.....................................................................................................................CCTCTCCTCCTTGTGGGTAG.................................................................................................................. 20 3 13 0.08 1 1 0 0
..................................................................TTGGCAGCACTCTGGAGG....................................................................................................................................................................... 18 1 16 0.06 1 1 0 0
.....................................................................................................................................GTTGCATGTGCCCCTTTGGC.................................................................................................. 20 3 20 0.05 1 0 0 1

Anti-sense strand reads

TTATGAATTGTTTACTAGACTCTTCTAGAAAGACTAGAAAGGTTTGGTTCCTTTTTGCTTAGGTTCAACCGTCGTGAGATCTCCGTCTCGAGACGGTATAGGGTATATATGGTATAGGGAGGGGAGGAACACACAACGTAGACGGGGAAAACTAAGATTGTTGGAGGGGGGGGGGATAGCGAGAGAACAACAACAGACATCGGGCCGCTACTCCGGCTGCTCCTCGATCTCCTCCTTCTGCTGCTTCTTCT
**************************************************.......(((((.(((..(((((.........(((((....)))))......((((((....................))))))......)))))..))).)))))(((((((........................))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body
..........................................................................................................GTAGGGTATTGGGAGGGGAGGAA.......................................................................................................................... 23 3 1 1.00 1 1 0 0
.........................CAGAAAGACTCGAAAGGTT............................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0
..................ACTCTGCTAGAAGGACTAG...................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0
.......................................................................................................................................AGGTTGACGGGGAAATCTAAG............................................................................................... 21 3 5 0.20 1 1 0 0
........................................................................................................ATCCATGGTATAGGGAGAGG............................................................................................................................... 20 3 5 0.20 1 0 1 0
.................................................................................................................ATAAGTAGGGGAGGAACA........................................................................................................................ 18 2 6 0.17 1 0 1 0
...................................................................................................................................................................GAGGGGGGGGGGATAGGGGGAGA................................................................. 23 2 8 0.13 1 1 0 0
......................................................................................................GGGTAGATGGTATAGGGAGGGG............................................................................................................................... 22 3 8 0.13 1 0 1 0
..............................................................GTTCAACCGTGCTGGGATC.......................................................................................................................................................................... 19 3 14 0.07 1 1 0 0
..............................................................................................................GGAATAGGGAGGCGAGGA........................................................................................................................... 18 2 16 0.06 1 1 0 0
...............................................................................................................................................................GTTGGAGGGTGGTGGGAT.......................................................................... 18 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group3a:974344-974594 + dps_2900 AATACT-TAACAAATGATCTGAGAAGATCTTTCTG-ATCTTTCCAA--ACC-----------------------------------------------------------------------------------------------------AA------G-GA--------------------------------------------A----AAA-C-GAATCCAAGTTGGCAGCACTCT-AGAGGCAG----------------AGCTC--------------------------------------T-----------GCCATATCCCATATATACCATATCCCTCCCCTCCTTGTGTGT---TGCATC------------------------------------------------------------------------------------------------------------------------TGCCCCTTTTGATTCTAACAACCTCCCCCCCC----CCTAT-------------CGCTCTCTTGTTGTTGT--CTGTAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAAGACGACGAAGAAGA
droPer2 scaffold_23:1004234-1004491 + AATACT-TAACAAATGATCTGAGAAGATCTTTCTG-ATCTTTCCAA--ACC-----------------------------------------------------------------------------------------------------AAAGGAAA----------A------C-----------------------AAAAACAA----AAA-C-GAATCCAAGTTGGCAGCACTCT-AGAGGCAG----------------AGCTC--------------------------------------T-----------GCCATATCCCATA--TACCATATCCCTCCCCTCCTTGTGTGT---TGCATCTGCCCCTCTGAT-------------------------------------------------------------------------------------------------------------------------TCTAACAA--CCTCCCCCA----CCTAT-------------CGCTCTCTTGTTGTTGT--CTGTAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAAGACGACGAAGAAGA
droWil2 scf2_1100000004540:383409-383671 + AAAACC-G--------------------------------------------------------------------------------------------------------------------------------------------------------A-AAAAAA--ACCAAACC------------TTGTCCTTTCCTTAT----TACACACACAA--AACAAGTTGGCAGCACTGCTTAAGGCAGATGAAGAAGAAAGAGCAGCAT--------------------------------GTGTTTT-----------GTTTGAC-------------------------------------TTG------------TTTTCCTTA--TGTTCC-----T------TCTG--------TTT-CTTTGTTTGTTTGTTTGTCCACCCCGC-----------------------------------------ATTC-------GCTT---AACCTTTATCTTC----TTA----AACCCACT---CCTCCACT--CC-ATAT--ATTCAGCCCGGCGACGAAGCCGACGAAGAG---GAGGAGGAAGAAACAGAAGCTGA
droVir3 scaffold_13049:3230668-3230883 - dvi_18159 AACCCA---------------------------------------------------------------------------------------------------------------------------------------------------A------A-AAAAAA----------------------------------------AC----AA-T-CCGCCCGAGTTGGCAGCACTGC-------AG---------------CAGCATGTAAATT--------------------------CGTTGTTGTTTTGATTT--A------------------------------TGTG--TGCGTGTG------------T---TTGCG--TGAACC-----TTTGACCCCTTA---ACTGCCT-GCAA-------------------CTGC--------------------------------AATTT----GCCT-------AACC--AAAC-TTT-----------------------------GTTCCACCGCCGTAAC--TCGCAGCCTGGTGACGAGGCCGACGAGGAGCCAGAAGAGGAGGACGACGACGA-GA
droMoj3 scaffold_6654:747145-747189 + G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCTGGTGACGAGGCGGACGAGGA---AGACGACGACGACGCCGA------
droGri2 scaffold_15110:4146829-4146879 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCTGGCGACGAGGCTGACGAGGAGCCAGAAGAGGAAGACGACGACGACG-
droAna3 scaffold_13337:106652-106923 + TATATT-TA-TAACTCCGATGAAAACATTT------ATATTTCAAA--ATC-----------------------------------------------------------------------------------------------------ATACCATA----------T------CGAGTTTATAATTTGGGTCTAAAAATACTCCA----AAT-C-CCAACGAAGTTGCCATCACTTG-ATCTTCAT-----------TG---AGGCC--------------------------------------------------------------------------------------C------CCTC------------CCAATCCCA--AGGC------------------------------------------------CAACACCCCAACCGACCATCCCTCGTCCCCCTTAATAAATTGTTTTT---ATTC------ACCCT--AAAC-CCCA----------------------TTTGCGT-AT-----AC-TTGCACCCGAAGCCCGGCGATGAAGCCGACGAGGAGCTAGACGACGAGGACGATGA------
droBip1 scf7180000395155:650663-650874 - ATGTTT--A-------------------------------------------------------------------------------------------------------------------------------------------------------A-GAAAGAAGAA---------------------------------------------A--ACCTCAAGCCAGAA-----------GCCAA----------------AGCATAAAAATTATTAGTCCATGTCCTTGCAAAGAAAGTGTCCT-----------GTTTATG---A----------------------TGTA------TTAG------------ACCATCCCA--CGTCCC-----CCTTAA-CATA--------TCT--------------------------------------------------------GTCTGTTTT----GTCA-------CCCT--AAAC-CCCA----------------------TTCGCCT-AC----------AC--CTGAAGCCCGGCGATGAAGCCGACGAGGAGCTAGACGACGAGGACGATGA------
droKik1 scf7180000297989:25819-26024 - CTTACC---------------------------------------------------------------------------------------------------------------------------------------------------A------A-GCCAGA---------------------------------------------------ACCCCAAAGTTGGCATCACTCT-ACGGGCAG----------------AGCAT--------------------------------G------------------AAATGTTCAAAA--------------------TTTGTGTGCGTGTGCGTG--------TGAACCCCA--TGTTCT-----CCTGACCCAAT--------A-----------------------------------------------------------------ACA---AACA-------ACCA---AACACTCCTTGAC--------T-------------CCCTCCCTTGAC-TTGCATATTCAGCCTGGCGATGAGGCCGACGAGGAGCTAGAGGAAGAGGACGAAGAGGACGA
droFic1 scf7180000454105:564912-565139 - TTTGGC---------------------------------------------------------------------------------------------------------------------------------------CATTCCCGTCCA-------A-GA-AG------------------------------------ATCCAA----AAG-C-AAACCCTAGTTGGCACTACTTG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------TGTA------------------------------TGAG------TGTG------------C---TCCCA--CGACAA-----CCCGACCCACGATCCACTGTCC-ACTTTC-------------------------------------------------CCCCGTGTCG---ACCC-------ACTT---AACACTTGTCCAA----CCCTC-------------CC-AC-----AC-TTGC--ATTCAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAGGACGAGGACGAGGA
droEle1 scf7180000491249:556279-556475 - AAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AAACCCTAGTTGGCACTACTTT-AAGTGCAG----------------AGCAT--------------------------------GTGCTTTT------TCTT--A------------------------------TCAG------TGTG------------TGATTCCCA--TGACAA-----CCTGACCCACT--------TTCCA------------------------------------------------------CTTTGTGTCA---ACCC-------ACTT---AACACTTATCCAATACTCCATA-------------CCAAAACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCTGATGAGGAGCTAGAGGAGGAGGACGAGGA------
droRho1 scf7180000768314:9972-10161 + AAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AAACCTTAGTTGGCATTACTTA-AAGGGCAG----------------AGCAT--------------------------------GTGTTTTT---------G--C------------------------------TGTG------T--GCGTG--------TGATTCCCA--TGACAA-----CCTCACCCACA--------TCC--------------------------------------------------------CGTTGTGTCA---ACCC-------ACTT---AACACTTATCCAA----TCCTC-------------CCAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGATGAGGAGCTAGAAGAGGAGGACGAGGA------
droBia1 scf7180000300910:518335-518520 - AAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AAACCCTAGTTGGCACTACTTG-AGGGGCAG-----------AG---AGCAC--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCA--GAAAAG-----CCCGACCCACT--------CCC--------------------------------------------------------CTTCGTGTC----ACCC-------ACTT---AACACTTATCCAA----CC-CC-------------CAATCACTTGTC--CGC--ATTCAGCCCGGCGATGAGGCCGATGAGGAGCTAGAGGAGGAGGACGAGGA------
droTak1 scf7180000415846:264389-264505 + CTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTGTGT---------------------------------------------------------------------------------------------------------------------------GTGTCACCCACCC-------ACTT---AACACCT--------------CCAAACCCTTT---TGACT-----AC-TCGC--ATTCAGCCCGGCGATGAGGCCGATGAGGAGCTAGAGGAGGAGGACGAGGAGGATCC
droEug1 scf7180000409184:473945-474142 - TCCTAT-------------------------------------------CC-----------------------------------------------------------------------------------------------------CA------A-GA-AAA--AC---------------------------------------------C--ACACCAAGTTGGCACTACTTG-AAGGGCAG----------------AGCAT--------------------------------GTGTTA-----------A--A------------------------------T------------G------------TGAGCCCCA--TGAAAA-----CCCGACCCACT--------CCC--------------------------------------------------------CTTCGTGTCACCCACCC-------ACTT---AACACTT-TCCGA----CCCTC-------------CAAACACTTGCC-TTAC--ATTCAGCCCGGCGATGAGGCCGACGAGGAGCTAGAAGAGGAGGACGAAGAAC----
dm3 chr3L:453445-453773 - ACCAAT-C------------GAGAAACT------------TAAA--CAACTAGTTACGAATAGAAAACATTCTGGGAGATATCTTACGCAAGACTTTTGACCGAAACCGAATTTGAGGGCTAGATTAAATCCAACATTTTGCACTCCTATCCCC------AAAA----------------------------------------TCAAATACTCATACAAAACCTTAGTTGGCATTACTAG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCAAACAAAAA-----CCCGACCCACT--------TCC--------------------------------------------------------CTTTGTGTG----ACCC-------ACTT---AACACTTATCCAA----CCATC-------------CGAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGATGAAGAGCTAGAGGAGGAGGACGAGGA------
droSim2 3l:417139-417318 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTAGTTGGCATTACTAG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCA--TGAAAC-----CCCGACCCACG--------TCC--------------------------------------------------------CTTTGTGTG----ACCC-------ACTT---AACACTTATCCAA----CCATC-------------CGAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGATGAGGAGCTAGAGGAGGAGGACGAGGA------
droSec2 scaffold_2:475541-475853 - AATACAGTAAGAACCGATC-GAGAAACTTTTTTTGCATCTTAAA--TAACTAGGAAGGAAAAGAAAACATAC---------------------------------------ATTGAGGGCCAGATAAAATCCTACATTTCGCACTCCTATCCCA------AAAAA---------------------------------------TCGAATATTTTTACAAAACCTTAGTTGGCATTACTAG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCA--TGAAAA-----CCCGACCCACG--------TCC--------------------------------------------------------CTTTGTGTG----GCCC-------ACTT---AACACTTATCCAA----CCATC-------------CGAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGATGAGGAGCTAGAGGAGGAGGACGAGGA------
droYak3 3L:429806-430016 - TTCCCA----------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGA----------------------------------------ATATTCGTACGAAACCTTAGTTGGCATTACTTG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCA--AGAAAATCCGACCCGACCCACA--------TCC--------------------------------------------------------TTTTGTGTC----ACCC-------ACTT---AACACTTATCCAA----CCATC-------------CGAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAGGACGAGGA------
droEre2 scaffold_4784:451376-451567 - AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAACCACAGTTGGCATTACTTG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------G--A------------------------------TGAG------TGTG------------TGAATCCCA--TGAGAA-----CCCGACCCACA--------TCC--------------------------------------------------------CTTTGTGTG----ACCC-------ACTT---AACACTTATCCAA----CCATC-------------CGAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAGGACGAGGACGAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AATACT-TAACAAATGATCTGAGAAGATCTTTCTG-ATCTTTCCAA--ACC-----------------------------------------------------------------------------------------------------AA------G-GA--------------------------------------------A----AAA-C-GAATCCAAGTTGGCAGCACTCT-AGAGGCAG----------------AGCTC--------------------------------------T-----------GCCATATCCCATATATACCATATCCCTCCCCTCCTTGTGTGT---TGCATC------------------------------------------------------------------------------------------------------------------------TGCCCCTTTTGATTCTAACAACCTCCCCCCCC----CCTAT-------------CGCTCTCTTGTTGTTGT--CTGTAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAAGACGACGAAGAAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGAGCTAGAGGAGGAAG.............2211.0010100000000
...........................................................................................................................................................................................................................GAATCCAAGTTGGCAGCACTCT-AGAGGC.....................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGCCGACGAGGAGCTAG......................2211.0010100000000
AATACT-TAACAAATGATCTGAGAAGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
droPer2
AATACT-TAACAAATGATCTGAGAAGATCTTTCTG-ATCTTTCCAA--ACC-----------------------------------------------------------------------------------------------------AAAGGAAA----------A------C-----------------------AAAAACAA----AAA-C-GAATCCAAGTTGGCAGCACTCT-AGAGGCAG----------------AGCTC--------------------------------------T-----------GCCATATCCCATA--TACCATATCCCTCCCCTCCTTGTGTGT---TGCATCTGCCCCTCTGAT-------------------------------------------------------------------------------------------------------------------------TCTAACAA--CCTCCCCCA----CCTAT-------------CGCTCTCTTGTTGTTGT--CTGTAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAAGACGACGAAGAAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.ATACT-TAACAAATGATCTGAGAAGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
...................................................................................................................................................................................................................................GTTGGCAGCACTCT-AGAG.......................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGAGGAGGAAGACGACGA......2111.001010000
droWil2
AAAACC-G--------------------------------------------------------------------------------------------------------------------------------------------------------A-AAAAAA--ACCAAACC------------TTGTCCTTTCCTTAT----TACACACACAA--AACAAGTTGGCAGCACTGCTTAAGGCAGATGAAGAAGAAAGAGCAGCAT--------------------------------GTGTTTT-----------GTTTGAC-------------------------------------TTG------------TTTTCCTTA--TGTTCC-----T------TCTG--------TTT-CTTTGTTTGTTTGTTTGTCCACCCCGC-----------------------------------------ATTC-------GCTT---AACCTTTATCTTC----TTA----AACCCACT---CCTCCACT--CC-ATAT--ATTCAGCCCGGCGACGAAGCCGACGAAGAG---GAGGAGGAAGAAACAGAAGCTGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAAGAG---GAGGAGGAAG.............2080.13100100
droVir3
AACCCA---------------------------------------------------------------------------------------------------------------------------------------------------A------A-AAAAAA----------------------------------------AC----AA-T-CCGCCCGAGTTGGCAGCACTGC-------AG---------------CAGCATGTAAATT--------------------------CGTTGTTGTTTTGATTT--A------------------------------TGTG--TGCGTGTG------------T---TTGCG--TGAACC-----TTTGACCCCTTA---ACTGCCT-GCAA-------------------CTGC--------------------------------AATTT----GCCT-------AACC--AAAC-TTT-----------------------------GTTCCACCGCCGTAAC--TCGCAGCCTGGTGACGAGGCCGACGAGGAGCCAGAAGAGGAGGACGACGACGA-GASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGACGAGGCCGACGAGGAGCC........................2511.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................TTGACCCCTTA---ACTGCCT-GCAA-------------------C............................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCTGGTGACGAGGCGGACGAGGA---AGACGACGACGACGCCGA------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCTGGCGACGAGGCTGACGAGGAGCCAGAAGAGGAAGACGACGACGACG-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TATATT-TA-TAACTCCGATGAAAACATTT------ATATTTCAAA--ATC-----------------------------------------------------------------------------------------------------ATACCATA----------T------CGAGTTTATAATTTGGGTCTAAAAATACTCCA----AAT-C-CCAACGAAGTTGCCATCACTTG-ATCTTCAT-----------TG---AGGCC--------------------------------------------------------------------------------------C------CCTC------------CCAATCCCA--AGGC------------------------------------------------CAACACCCCAACCGACCATCCCTCGTCCCCCTTAATAAATTGTTTTT---ATTC------ACCCT--AAAC-CCCA----------------------TTTGCGT-AT-----AC-TTGCACCCGAAGCCCGGCGATGAAGCCGACGAGGAGCTAGACGACGAGGACGATGA------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGCCGACGAGGAGCT........................2014.004000040
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGCCGACGAGGAGCTAGAC....................2412.002010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTAGACGACGAGGAC...........1911.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGGAGCTAGACGACGAGGA............2411.001100000
droBip1
ATGTTT--A-------------------------------------------------------------------------------------------------------------------------------------------------------A-GAAAGAAGAA---------------------------------------------A--ACCTCAAGCCAGAA-----------GCCAA----------------AGCATAAAAATTATTAGTCCATGTCCTTGCAAAGAAAGTGTCCT-----------GTTTATG---A----------------------TGTA------TTAG------------ACCATCCCA--CGTCCC-----CCTTAA-CATA--------TCT--------------------------------------------------------GTCTGTTTT----GTCA-------CCCT--AAAC-CCCA----------------------TTCGCCT-AC----------AC--CTGAAGCCCGGCGATGAAGCCGACGAGGAGCTAGACGACGAGGACGATGA------SizeHit CountTotal NormTotal
No Reads
droKik1
CTTACC---------------------------------------------------------------------------------------------------------------------------------------------------A------A-GCCAGA---------------------------------------------------ACCCCAAAGTTGGCATCACTCT-ACGGGCAG----------------AGCAT--------------------------------G------------------AAATGTTCAAAA--------------------TTTGTGTGCGTGTGCGTG--------TGAACCCCA--TGTTCT-----CCTGACCCAAT--------A-----------------------------------------------------------------ACA---AACA-------ACCA---AACACTCCTTGAC--------T-------------CCCTCCCTTGAC-TTGCATATTCAGCCTGGCGATGAGGCCGACGAGGAGCTAGAGGAAGAGGACGAAGAGGACGASizeHit CountTotal NormTotal
No Reads
droFic1
TTTGGC---------------------------------------------------------------------------------------------------------------------------------------CATTCCCGTCCA-------A-GA-AG------------------------------------ATCCAA----AAG-C-AAACCCTAGTTGGCACTACTTG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------TGTA------------------------------TGAG------TGTG------------C---TCCCA--CGACAA-----CCCGACCCACGATCCACTGTCC-ACTTTC-------------------------------------------------CCCCGTGTCG---ACCC-------ACTT---AACACTTGTCCAA----CCCTC-------------CC-AC-----AC-TTGC--ATTCAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAGGACGAGGACGAGGASizeHit CountTotal NormTotal
No Reads
droEle1
AAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AAACCCTAGTTGGCACTACTTT-AAGTGCAG----------------AGCAT--------------------------------GTGCTTTT------TCTT--A------------------------------TCAG------TGTG------------TGATTCCCA--TGACAA-----CCTGACCCACT--------TTCCA------------------------------------------------------CTTTGTGTCA---ACCC-------ACTT---AACACTTATCCAATACTCCATA-------------CCAAAACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCTGATGAGGAGCTAGAGGAGGAGGACGAGGA------SizeHit CountTotal NormTotal
No Reads
droRho1
AAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AAACCTTAGTTGGCATTACTTA-AAGGGCAG----------------AGCAT--------------------------------GTGTTTTT---------G--C------------------------------TGTG------T--GCGTG--------TGATTCCCA--TGACAA-----CCTCACCCACA--------TCC--------------------------------------------------------CGTTGTGTCA---ACCC-------ACTT---AACACTTATCCAA----TCCTC-------------CCAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGATGAGGAGCTAGAAGAGGAGGACGAGGA------SizeHit CountTotal NormTotal
No Reads
droBia1
AAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AAACCCTAGTTGGCACTACTTG-AGGGGCAG-----------AG---AGCAC--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCA--GAAAAG-----CCCGACCCACT--------CCC--------------------------------------------------------CTTCGTGTC----ACCC-------ACTT---AACACTTATCCAA----CC-CC-------------CAATCACTTGTC--CGC--ATTCAGCCCGGCGATGAGGCCGATGAGGAGCTAGAGGAGGAGGACGAGGA------SizeHit CountTotal NormTotal
No Reads
droTak1
CTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTGTGT---------------------------------------------------------------------------------------------------------------------------GTGTCACCCACCC-------ACTT---AACACCT--------------CCAAACCCTTT---TGACT-----AC-TCGC--ATTCAGCCCGGCGATGAGGCCGATGAGGAGCTAGAGGAGGAGGACGAGGAGGATCCSizeHit CountTotal NormTotal
No Reads
droEug1
TCCTAT-------------------------------------------CC-----------------------------------------------------------------------------------------------------CA------A-GA-AAA--AC---------------------------------------------C--ACACCAAGTTGGCACTACTTG-AAGGGCAG----------------AGCAT--------------------------------GTGTTA-----------A--A------------------------------T------------G------------TGAGCCCCA--TGAAAA-----CCCGACCCACT--------CCC--------------------------------------------------------CTTCGTGTCACCCACCC-------ACTT---AACACTT-TCCGA----CCCTC-------------CAAACACTTGCC-TTAC--ATTCAGCCCGGCGATGAGGCCGACGAGGAGCTAGAAGAGGAGGACGAAGAAC----SizeHit CountTotal NormTotal
No Reads
dm3
ACCAAT-C------------GAGAAACT------------TAAA--CAACTAGTTACGAATAGAAAACATTCTGGGAGATATCTTACGCAAGACTTTTGACCGAAACCGAATTTGAGGGCTAGATTAAATCCAACATTTTGCACTCCTATCCCC------AAAA----------------------------------------TCAAATACTCATACAAAACCTTAGTTGGCATTACTAG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCAAACAAAAA-----CCCGACCCACT--------TCC--------------------------------------------------------CTTTGTGTG----ACCC-------ACTT---AACACTTATCCAA----CCATC-------------CGAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGATGAAGAGCTAGAGGAGGAGGACGAGGA------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGCCGATGAAGAGCTAGAGGA..................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGCCGATGAAGAGCTAGA.....................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ATTTGAGGGCTAGATTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCCGATGAAGAGCTAGAGG...................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CTAG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------A--A------------------------------...........................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGAGGCCGATGAAGAGCTAGAGG...................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCCGATGAAGAGCTAGAGGA..................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCCGATGAAGAGCTAGA.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------CGAACACTTGAC-TTGC--ATTCAG..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TAGAAAACATTCTGGGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGAAGAGCTAGAGGAGGAG..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTAGAGGAGGAGGAC...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGAAGAGCTAGAGGAGG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCGATGAGGCCGATGAAGAGCTAGA.....................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACACTTGAC-TTGC--ATTCAG..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGATGAAGAGCTAGAGG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC-------------CGAACACTTGAC-TTGC--ATTCAG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGGCCGATGAAGAGCTT.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
............................................................................AGATATCTTACGCAAGACTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-------------CGAACACTTGAC-TTGC--ATTCAG..................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCC..........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTAGAGGAGGAGGA............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGCCGATGAAGAGCTAGAGG...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTT---AACACTTATCCAA----CCATC-------------...........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCGATGAGGCCGATGAA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCAAACA....................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................T--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAAT............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................AGTTGGCATTACTAG-AAG........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ACCGAATTTGAGGGCTAGATTAAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AACCGAATTTGAGGGCTAGATTAAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGAGCTAGAGGAG.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCGATGAAGAGCTAGAGGA..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGCCGATGAAGAGCTAGA.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CCCAAACAAAAA-----CCCGAC.....................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCGATGAAGAGCTAGAGGAGG................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................GACCGAAACCGAATTTGAGGGCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTG----ACCC-------ACTT---AACACT........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------CGAACACTTGAC-TTGC--ATT.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................AGTTGGCATTACTAG-AAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................................................AACCTTAGTTGGCATTACTAG-AAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AAACCGAATTTGAGGGCTAGATTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAA----CCATC-------------CGAACACTTGAC-TTGC--AT......................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGATGAAGAGCTAGAGGA..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGAGGAGGAGGACGAGG.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGCCGATGAAGAGC.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAAGAGCTAGAGGAGGAGGA............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................CATTCTGGGAGATATCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCCGATGAAGAGCTAGAGGAG.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTAGAGGAGGAGGACGAG........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................AAACATTCTGGGAGATATCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................................................................................GTTGGCATTACTAG-AAGGGCA....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGCGATGAGGCCGATGAAGAGCTA.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................AGTTGGCATTACTAG-AAGGGCAG----------------...................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGATGAGGCCGATGAAGAGCTAGA.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTGAC-TTGC--ATTCAA..................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGAGGACGAGGA------1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
droSim2
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTAGTTGGCATTACTAG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCA--TGAAAC-----CCCGACCCACG--------TCC--------------------------------------------------------CTTTGTGTG----ACCC-------ACTT---AACACTTATCCAA----CCATC-------------CGAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGATGAGGAGCTAGAGGAGGAGGACGAGGA------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGCTAGAGGAGGAGGACGAG........2511.00100000000010000000
..................................................................................................................................................................................................................................................AAGGGCAG----------------AGCAT--------------------------------GTG...........................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
droSec2
AATACAGTAAGAACCGATC-GAGAAACTTTTTTTGCATCTTAAA--TAACTAGGAAGGAAAAGAAAACATAC---------------------------------------ATTGAGGGCCAGATAAAATCCTACATTTCGCACTCCTATCCCA------AAAAA---------------------------------------TCGAATATTTTTACAAAACCTTAGTTGGCATTACTAG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCA--TGAAAA-----CCCGACCCACG--------TCC--------------------------------------------------------CTTTGTGTG----GCCC-------ACTT---AACACTTATCCAA----CCATC-------------CGAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGATGAGGAGCTAGAGGAGGAGGACGAGGA------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCGATGAGGAGCTAGAGGAGGA...............2611.0010010
...................................................................................................................................................................................................................................................................................................................TT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCA--TGAA..................................................................................................................................................................................................................................2511.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGCCGATGAGGAGCTAGA.....................2311.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGATGAGGCCGATGAGGAGC.........................2311.0010010
droYak3
TTCCCA----------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGA----------------------------------------ATATTCGTACGAAACCTTAGTTGGCATTACTTG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCA--AGAAAATCCGACCCGACCCACA--------TCC--------------------------------------------------------TTTTGTGTC----ACCC-------ACTT---AACACTTATCCAA----CCATC-------------CGAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAGGACGAGGA------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................TACTTG-AAGGGCAG----------------AGCAT--------------------------------..............................................................................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGCGATGAGGCCGACGAGGAGCTA.......................2811.00100000010000
...................................................................................................................................................................................................................................................................................................................TT-----------A--A------------------------------TGAG------TGTG------------TGAATCCCA--......................................................................................................................................................................................................................................2111.00101000000000
droEre2
AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAACCACAGTTGGCATTACTTG-AAGGGCAG----------------AGCAT--------------------------------GTGTTT-----------G--A------------------------------TGAG------TGTG------------TGAATCCCA--TGAGAA-----CCCGACCCACA--------TCC--------------------------------------------------------CTTTGTGTG----ACCC-------ACTT---AACACTTATCCAA----CCATC-------------CGAACACTTGAC-TTGC--ATTCAGCCCGGCGATGAGGCCGACGAGGAGCTAGAGGAGGAGGACGAGGACGAGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTAGAGGAGGAGGA............1812.0020000020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGGCCGACGAGGAGCTAGA.....................2411.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGCCGACGAGGAGCTAGA.....................2311.0010000010
...................................................................................................................................................................................................................................................................................................................TT-----------G--A------------------------------TGAG------TGTG------------TGAATCCCA--TG....................................................................................................................................................................................................................................2311.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGAGGAGGAGGACGAGGAC.....2211.0010000010
........................................................................................................................................................................................................................................CATTACTTG-AAGGGCAG----------------AGCAT--------------------------------GTGT..........................................................................................................................................................................................................................................................................................................................2611.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGCCGACGAGGAGC.........................1911.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCGGCGATGAGGCCGACGAGGAGCT........................2811.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGAGGACGAGGAC.....1911.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGAGGAGGAGGACGAGGG......2111.0010001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGAGGACGAGGACGAGG.2311.0010000100

Generated: 05/18/2015 at 05:41 AM