ID:

dps_2892

 Coordinate:

XR_group3a:525119-525392 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.6 -10.3 -10.1

Flybase annnotation

exon [dpse_GLEANR_1486:2]; CDS [Dpse\GA24527-cds]; CDS [Dpse\GA24527-cds]; exon [dpse_GLEANR_1486:1]; intron [Dpse\GA24527-in]

No Repeatable elements found

mature
star
  1. dps_2892  XR_group3a:525249-525269 -
  2. XR_group3a:532280-532300 -

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------########################--------------------------
CGCTCCGTTTTACGGACAACCCGAATGAGCTAGTCAACACCATGCGCGCGGTGTTTCTAATAAACCAGATAAGTATTTGGAACAACTGCAGCCATTCAGAAATCCGCTTGGAGGTCTCATGCGACCAGACTCACTGGGATCATGTGAATATGATCAGCGCCGTCTGCCATATTTTGAGAGTTGGCATTACGAAGCGTGCCGTTCGGTACATTCGGGTTAAAAGTTGTACAAGGTTGAATCTCGGTCTGATGGCCAGGTTGATCAGAGCCCCTGAATGCAGTTCACTTCTGACAACTCTTCAAATATAGTTTCCAATGTTTAAAGAACAACAATTTGGGCACCAGCTAATAGGTGTATATGCTGATACGAATAAA
*****************************************************************************************************************************************************************************.......(((((....((((..(((((....))))).)))).)))))....................************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 GSM444067
head
 M059
embryo
 GSM343916
embryo
...................................................................................................................................................................................................................TCGGGTTAAAAGTTGTACAAGGTTGAATC...................................................................................................................................... 29 0 1 3.00 3 0 3 0 0 0
...............................................................................................................................................................................................................................................CTCGGTCTGATGGCCAGGTTG.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..........................................................................ATTTGGCACACCTGTAGCCATT...................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................TTGAGAGTTGGCATTACGAAG.................................................................................................................................................................................... 21 0 2 1.00 2 0 2 0 0 0
.....................................................................................................................................................................................................GCCGTTCGGTACATTCGGGTT............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
.........................................ATGCGCGGGGTGTTTCGA........................................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................................TTAAAGAACAACAATTTGGG.................................... 20 0 2 0.50 1 1 0 0 0 0
..........................................TGCGCGCGGGGTTTCAAAAAAA...................................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
..........TACGGACAACCCGAATGAGCT....................................................................................................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
.................................TCAACGTCATGCGCGCGGCG................................................................................................................................................................................................................................................................................................................................. 20 3 3 0.33 1 1 0 0 0 0
.............................................................................................................................................ATGTGAATATGCTCAGCGC...................................................................................................................................................................................................................... 19 1 20 0.10 2 2 0 0 0 0
.................................................................................................................................................AAAAATGATCAGCACCGTCT................................................................................................................................................................................................................. 20 3 12 0.08 1 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................................GGACAACAATTTGGGGAC................................. 18 2 13 0.08 1 0 0 0 1 0
.............................................................................................................GGGGGGCTCATGCGAACAG...................................................................................................................................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0
..........................................TGCGCGCGGGGTTTCAAAAA........................................................................................................................................................................................................................................................................................................................ 20 3 17 0.06 1 1 0 0 0 0
................................................................................................................................................................................................................CGTACGGTTTAAAAGTTGT................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1
..................................................................................................................................................AAAATGATCAGCACCGTTT................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0
.................CACCAGAATTAGCTAGTC................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GCGAGGCAAAATGCCTGTTGGGCTTACTCGATCAGTTGTGGTACGCGCGCCACAAAGATTATTTGGTCTATTCATAAACCTTGTTGACGTCGGTAAGTCTTTAGGCGAACCTCCAGAGTACGCTGGTCTGAGTGACCCTAGTACACTTATACTAGTCGCGGCAGACGGTATAAAACTCTCAACCGTAATGCTTCGCACGGCAAGCCATGTAAGCCCAATTTTCAACATGTTCCAACTTAGAGCCAGACTACCGGTCCAACTAGTCTCGGGGACTTACGTCAAGTGAAGACTGTTGAGAAGTTTATATCAAAGGTTACAAATTTCTTGTTGTTAAACCCGTGGTCGATTATCCACATATACGACTATGCTTATTT
**************************************************************************************************************************************.......(((((....((((..(((((....))))).)))).)))))....................***************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M022
male body		 GSM444067
head
.............................................CGCGTCCCAAAGATTATCTGG.................................................................................................................................................................................................................................................................................................................... 21 3 2 3.50 7 7 0 0 0
.............................................CGCGTCCCAAAGATTATCTG..................................................................................................................................................................................................................................................................................................................... 20 3 4 3.00 12 10 2 0 0
.............................................CGCGTCCCAAAGATTATCTGGTC.................................................................................................................................................................................................................................................................................................................. 23 3 2 1.00 2 2 0 0 0
.............................................CGCGTCCCAAAGATTATCTGGT................................................................................................................................................................................................................................................................................................................... 22 3 2 1.00 2 2 0 0 0
...............................................CGTCCCAAAGATTATCTGGTC.................................................................................................................................................................................................................................................................................................................. 21 3 3 0.67 2 2 0 0 0
.....................................................................................................................................................................................ACCGAAAAGCGTCGCACGG.............................................................................................................................................................................. 19 3 20 0.35 7 7 0 0 0
...............................................CGTCCCAAAGATTATCTGG.................................................................................................................................................................................................................................................................................................................... 19 3 10 0.30 3 3 0 0 0
.............................................................................................TAAGTGTTTAGTCGAACCG...................................................................................................................................................................................................................................................................... 19 3 20 0.25 5 4 0 0 1
.............................................................................................TAAGTGTTTAGTCGAACC....................................................................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0
........................AACTCGGTCAGTTGTGGT............................................................................................................................................................................................................................................................................................................................................ 18 2 8 0.13 1 1 0 0 0
......................................................................................................................................................................................................................................................................................TAAAGTGGAGACTGTTGA.............................................................................. 18 2 10 0.10 1 1 0 0 0
...............................................................................................................................................CGGTTATACTAGTCCCGGC.................................................................................................................................................................................................................... 19 3 12 0.08 1 1 0 0 0
....................................................................................................................................................................................................................................................................................CTTAAAGTGGAGACTGTTGA.............................................................................. 20 3 12 0.08 1 1 0 0 0
....................................................................................................................................................................................................................................................................................CTTAAAGTGGAGACTGTTG............................................................................... 19 3 20 0.05 1 1 0 0 0
........................................................................................................................................................................................................................................................................CTGGAGGACTTACGTTAAG........................................................................................... 19 3 20 0.05 1 1 0 0 0
..................................................CCCAAAGATTATCTGGTCA................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0
....................................................CAAAGATTATCTGGTCACT............................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group3a:525069-525442 - dps_2892 CGCTCCG---TTTTACGGACAACCCGAATGAGCTAGTCAACACCA--TGCGCGCGGTGTTTCTAATAAACCAGATAAGTATTTGGAA---CAACTGCAGCCATTCAGAAATCCGCTTGGAGGTCTCATGCGACCAGACTCACTGGGATCATGTG-------------AATATGATCAGCGCCGTCTGCCATATTTTGAGAGTTGGCATTACGAAGCGTGCCGTTCGGTACATTCGGGTTAAAAGTTGTACAAGGTTGAATCTCGGTCTGATGGCCAGGTTGATCAGAGCCCCTGAATGCAGTTCACTTCTGACAACTCTTCAAATATAGTTTCCAATGTTTAAAGAACAACAATTTGGGCACCAGCTAATAGGTGTATATGCTGATACGAATAAA
droPer2 scaffold_23:542851-543224 - CGCTCCG---TTTTACGGACAACCCGAATGAGCTAGTCAT--CCAGCTGCGCGCGGTGTTTCTAATAAACCAGATAAGTATTTGGAACTACAACTGCAGCCATTCAGAAATCCGCTTGGAGGTCTCATGCGACCAGACTCACTGGGATCATGTG-------------AATAAGATCAGCGCCGTCTGCCATATGTTGAGAGTTGGCATTGCGAAGCGTGCCGTTCGGTACATTCGGGTTAAAAGTTGTACAAGGTTGAATCTCCGTGTGATGGCCAGGTTGATCAGAG---CTGAATGCAGTTCACTTCTGACAACTCTTCAAATATAGTTTCCAATGTTTAAAGAACAACAATTTGGGCACCAGCTAATAGGTGTATATGCTGATACGAATAAA
droWil2 scf2_1100000004921:3087019-3087037 + CACAATG---CACTAAGGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15081:2616477-2616501 + CATCGCGTTGCATT-----CAAGGCGAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302517:142690-142801 + TGG--------------------------------------------------------------------------------------------------------------------AGGTATCCGGCGATCAGCAGCACTGGGATCGTGTGGTGGACTACAGTGAGTACCATTGCCGTTCCTGGCAATATTTGT--A-----CTTTGCAGCGCGACCCGTGCGCTTCATCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302126:3594754-3594772 + CGCGCTG---CATTCAGGGCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:10121949-10121955 + CGCGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_8:1140439-1140445 + CGCGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:4467192-4467198 - CGCGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGCTCCG---TTTTACGGACAACCCGAATGAGCTAGTCAACACCA--TGCGCGCGGTGTTTCTAATAAACCAGATAAGTATTTGGAA---CAACTGCAGCCATTCAGAAATCCGCTTGGAGGTCTCATGCGACCAGACTCACTGGGATCATGTG-------------AATATGATCAGCGCCGTCTGCCATATTTTGAGAGTTGGCATTACGAAGCGTGCCGTTCGGTACATTCGGGTTAAAAGTTGTACAAGGTTGAATCTCGGTCTGATGGCCAGGTTGATCAGAGCCCCTGAATGCAGTTCACTTCTGACAACTCTTCAAATATAGTTTCCAATGTTTAAAGAACAACAATTTGGGCACCAGCTAATAGGTGTATATGCTGATACGAATAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................TCGGGTTAAAAGTTGTACAAGGTTGAATC......................................................................................................................................2913.0030000000030
....................................................................................................................................................................................................................................................................CTCGGTCTGATGGCCAGGTTG..................................................................................................................2111.0010100000000
..................................................................................................................................................................................................TTGAGAGTTGGCATTACGAAG....................................................................................................................................................................................2121.0020000000020
..........................................................................................................................................................................................................................GCCGTTCGGTACATTCGGGTT............................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................TTAAAGAACAACAATTTGGG....................................2020.5010100000000
.............TACGGACAACCCGAATGAGCT.........................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
droPer2
CGCTCCG---TTTTACGGACAACCCGAATGAGCTAGTCAT--CCAGCTGCGCGCGGTGTTTCTAATAAACCAGATAAGTATTTGGAACTACAACTGCAGCCATTCAGAAATCCGCTTGGAGGTCTCATGCGACCAGACTCACTGGGATCATGTG-------------AATAAGATCAGCGCCGTCTGCCATATGTTGAGAGTTGGCATTGCGAAGCGTGCCGTTCGGTACATTCGGGTTAAAAGTTGTACAAGGTTGAATCTCCGTGTGATGGCCAGGTTGATCAGAG---CTGAATGCAGTTCACTTCTGACAACTCTTCAAATATAGTTTCCAATGTTTAAAGAACAACAATTTGGGCACCAGCTAATAGGTGTATATGCTGATACGAATAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................GTTGGCATTGCGAAGCGTG................................................................................................................................................................................1920.501000001
.............................................................................................................................................................................................................................................................................................................TTCACTTCTGACAACTCTTCAAATA.....................................................................2520.501010000
.........................................................................................................................................................................................................................................CGGGTTAAAAGTTGTACAAGGTTGAATC......................................................................................................................................2820.501000001
droWil2
CACAATG---CACTAAGGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droGri2
CATCGCGTTGCATT-----CAAGGCGAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droKik1
TGG--------------------------------------------------------------------------------------------------------------------AGGTATCCGGCGATCAGCAGCACTGGGATCGTGTGGTGGACTACAGTGAGTACCATTGCCGTTCCTGGCAATATTTGT--A-----CTTTGCAGCGCGACCCGTGCGCTTCATCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGCGCTG---CATTCAGGGCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSim2
CGCGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CGCGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droEre2
CGCGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 05:43 AM