ID:

dps_2886

 Coordinate:

XR_group3a:146625-146864 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.6 -34.4 -34.4

Flybase annnotation

exon [dpse_GLEANR_1503:15]; exon [dpse_GLEANR_1503:14]; CDS [Dpse\GA19890-cds]; CDS [Dpse\GA19890-cds]; intron [Dpse\GA19890-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGAGTGACACGGAGTACGCCTACGGGACGCTCAACAAGAGCCAGAACAATGTATGACAAATACTCCATTACCTACAACCATGTTAGACTTTGTTTTTAGTTGATTGATGACTGCACCAGTGATTAAGATTGGCATTGAGATTGATGACGAAATTGAGGCACCATTTATGTTTATTTCTAATTAGTAGTCGGTGGCGTGGGGCTCTAATTGGTCGAAAATCTAACACGTAACCTATTTAACCAACCGTATTTCTCTCTTTCTCTCTCTCCTCTAACCCGTAACCCTAACAGACTCTGGGTCGCAGCGGCTACTATGCGTCTGGGGAGATTCCCAGTTCGCC
**************************************************((((.....)))).................(((((((((........)))...(((((.((((...)))).)))))....((....((((..((.((.(((((...(((((((((..((.(((....))).))..))).))))..(((((.......((((........)))).......)))))........))..)))))))))..)))).....))..............)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M062
head
 M059
embryo
 GSM343916
embryo
 V112
male body		 GSM444067
head
 M022
male body		 SRR902012
CNS imaginal disc
 SRR902010
ovaries
............................................................................................................................................................................................................................................................TCTCTTTTTCTCTCTCCTAT.................................................................... 20 2 20 10.95 219 2 178 37 0 2 0 0 0 0
..........................................................................................................................................................................................................................................................TCTCTCTTTTTCTCTCTCCTAT.................................................................... 22 2 9 8.78 79 2 58 18 0 1 0 0 0 0
...............................................................................................................TGCACCAGTGATTGAGATTG................................................................................................................................................................................................................. 20 1 1 2.00 2 1 0 0 0 1 0 0 0 0
..............................................................................................................GTGCACCAGTGATTAAGATTG................................................................................................................................................................................................................. 21 1 1 2.00 2 1 0 0 0 0 0 1 0 0
..............................................................................................................ATGCACCAGTGATTAAGATTG................................................................................................................................................................................................................. 21 1 2 2.00 4 4 0 0 0 0 0 0 0 0
................................AACAAGAGCCAGAACAAT.................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...GTGACACGGAGTACGCCTACGG........................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................ATTGAGATTGATGACGAAATTGAGGC..................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................................................................................................TACTATCCGTCTGGGGAGATTCCC........ 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TACTATGCGTCTGGGGAGATTCCC........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................GGGACGCTCAACAAGAGCCAGA....................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................GTGCACCAGTGATTGAGATTG................................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCTCTCTTTTTCTCTCTCCTATA................................................................... 23 2 3 1.00 3 0 2 1 0 0 0 0 0 0
...............................................................................................................TGCACCAGTGATTGGGATTG................................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......ACACGGAGTACGCCTACGG........................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TACTCTGGGTCGCAGCGGCTAC............................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.....GACACGGAGTACGCCTACGG........................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............GTACGCCTACGGGACGCT..................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....GACACGGAGTACGCCTACGGGACG....................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GCAGCGGCTACTATGCGTCT.................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................CTACGGGACGCTCAACAAG.............................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................TGCACCAGTGATTGGGATTGC................................................................................................................................................................................................................ 21 3 4 1.00 4 0 0 0 0 1 3 0 0 0
..............................................................................................................................................................................................................................................................................................CAATACTCTGGGTCGCAGCGGCTAC............................. 25 3 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GGCTACTATGCGTCTGGG................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......CACGGAGTACGCCTACGGGACGCT..................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCAGTCTTTCTCTCTCTCCTCT.................................................................... 22 2 4 0.75 3 0 0 0 3 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCTGTCTTTTTCTCTCTCCTCT.................................................................... 22 2 5 0.60 3 0 0 0 2 0 1 0 0 0
..............................................................................................................ATGCACCAGTGATTGGGATTG................................................................................................................................................................................................................. 21 3 4 0.50 2 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................TCTCTCTTTTTCTCTCTCCTCT.................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0
..............................................................................................................ATGCACCAGTGATTGAGATT.................................................................................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................ATGCACCAGTGGTTTAGATTG................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0
...............................................................................................................TGCACCAGTGATTAAGATTGC................................................................................................................................................................................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCACTCTTTGTCTCTCTCCTCT.................................................................... 22 2 3 0.33 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................TCACTCTTTTTCTCTCTCCTCT.................................................................... 22 2 10 0.30 3 0 0 0 2 0 1 0 0 0
..........................................................................................................................................................................................................................................................TCTCTCTTTTTCTCTCTCCT...................................................................... 20 1 18 0.28 5 0 5 0 0 0 0 0 0 0
.....................................................................................................................................GTTGAGTTTGATGACGAAA............................................................................................................................................................................................ 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TCTCTTTTTCTCTCTCCTATA................................................................... 21 2 5 0.20 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................CTCTCTTTTTCTCTCTCCTAT.................................................................... 21 2 18 0.17 3 0 2 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCACTCTTTCTCTCTCTCCTAT.................................................................... 22 2 6 0.17 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCTGTCTTTCACCCTCTCCTCT.................................................................... 22 3 6 0.17 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................................AAGCGACTGGGGAGATGCCC........ 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGTCTCTTTTTCTCTCTCCTAT.................................................................... 22 3 20 0.15 3 0 3 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCTCACTTTCTCTCTCTCCTAT.................................................................... 22 2 7 0.14 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................CTTTATCTCTCTCCTATAA.................................................................. 19 2 8 0.13 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCCGTCTTTCTCTCTCTCCTC..................................................................... 21 2 11 0.09 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCTGACTTTCTCTCTCTCCTAT.................................................................... 22 3 13 0.08 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................TAGTTGGTGGAGGGGGGCTC........................................................................................................................................ 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TATGTCTTTTTCTCTCTCCTCT.................................................................... 22 3 14 0.07 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................TCTGTGGGTCGCAGCGGC................................ 18 2 14 0.07 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................TCTTTCTCTCTCTCCTAT.................................................................... 18 1 16 0.06 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GCTCTCTTTTTCTCTCTCCTATA................................................................... 23 3 16 0.06 1 0 0 1 0 0 0 0 0 0
....................................................................GACGTACTACCATGTTAG.............................................................................................................................................................................................................................................................. 18 3 19 0.05 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................CACTCTTTCTCTCTCTCCTAT.................................................................... 21 2 19 0.05 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................GTCTCTTTTTCTCTCTCCTAT.................................................................... 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCACTGTTTTTCTCTCTCCTCT.................................................................... 22 3 20 0.05 1 0 0 0 0 0 1 0 0 0
...............................................................................................................TGCGCCAGTGATTGGGATTG................................................................................................................................................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TCCGTCTTTCTCTCTCTCCT...................................................................... 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TCTCACTGTGCCTCATGCGGATGCCCTGCGAGTTGTTCTCGGTCTTGTTACATACTGTTTATGAGGTAATGGATGTTGGTACAATCTGAAACAAAAATCAACTAACTACTGACGTGGTCACTAATTCTAACCGTAACTCTAACTACTGCTTTAACTCCGTGGTAAATACAAATAAAGATTAATCATCAGCCACCGCACCCCGAGATTAACCAGCTTTTAGATTGTGCATTGGATAAATTGGTTGGCATAAAGAGAGAAAGAGAGAGAGGAGATTGGGCATTGGGATTGTCTGAGACCCAGCGTCGCCGATGATACGCAGACCCCTCTAAGGGTCAAGCGG
**************************************************((((.....)))).................(((((((((........)))...(((((.((((...)))).)))))....((....((((..((.((.(((((...(((((((((..((.(((....))).))..))).))))..(((((.......((((........)))).......)))))........))..)))))))))..)))).....))..............)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M062
head
 M040
female body
 GSM343916
embryo
 GSM444067
head
 V112
male body
...........................................................................................................TATGACGTGGTTACTAATTCTAAC................................................................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0
...............................................................AGGGAATGGATGTAGGTA................................................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 1 0 0
...............................GTTGGTCTCCGTCTTGTTACG................................................................................................................................................................................................................................................................................................ 21 3 10 0.10 1 0 0 0 1 0
......................................................................GGACGTTGGTACCATATGA........................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 1 0 0 0
.............................................................................................................................................................................................................................................................................AGACCGGGCGTTGGGATTG.................................................... 19 3 13 0.08 1 0 1 0 0 0
...................................................................................................................................................................................TATTCATACGCCACCGCAC.............................................................................................................................................. 19 3 14 0.07 1 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................ACGAAGACCCCTCTAAAGGG....... 20 3 16 0.06 1 0 1 0 0 0
..............................................................................................................GACCTGGTGCCTAATTCT.................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group3a:146575-146914 - dps_2886 AGAGTGACACGGAGTACGCCTACGGGACGCTCAACAAGAGCCAGAACAATGTATGACA-AATAC------T-----------CC-ATTACC----------------------TACAACCATG-T--TAGAC-TTTGTTT-TTAG-----TTGATTGATGACTGCAC---CAGTGATTA---AGATTGGCATTGAGATT--GATGACGAAATTGAGG-CACCATTTATGTTTAT--T-----------------------------TCTAAT--TA-----G------------------TAGTCGGTGG-CGTGGG-------GCTCTAATTGGTCGAAAATCTAACACGTAACCTATTTAACCAACCGTATTTCTCT----CTTTCTCTCTCTCCTCTAA-----CCCG-TAACCCTAACAGACTCTGGGTCGCAGCGG------------CTACTATGCGTCT------GGGGAGATTCCCAGTTCGCC
droPer2 scaffold_23:149936-150275 - AGAGTGACACGGAATACGCCTACGGGACGCTCAACAAGAGCCAGAACAATGTATGACA-AATGC------T-----------CC-ATTACC----------------------TACAACCATG-T--TAGAC-TTTGTTT-TTAG-----TTGATTGATGACTGCAC---CAGTGATTA---AGATTGGCATTGAGATT--GATGACGAAATTGAGG-CACCATTTATGTTTAT--T-----------------------------TCTAAT--TA-----G------------------TAGTCGGTGG-CGTGGG-------GCTCTAATTGGTCGAAAATCTAACACGTAACCTATTTAACCAACCGTATTTCTCT----CTTTCTCTCTCTCCTCTAA-----CCCG-TAACCCTAACAGACTCTGGGTCGCAGCGG------------CTACTATGCGTCT------GGGGAGATTCCCAGTTCGCC
droWil2 scf2_1100000004762:5215219-5215557 + AGAGCGACACGGAATATGCGTATGGAAACCACAACAAGAGTCAGAACAATGTATGAAC-CATTT---TTCTTT-------CAAA-GATTTCTAGTTTAGG-----------------GC-----TTTAATATTTTTGTTT--GAAAATAGTTAT---CTGACTGCAC---CAAC---------AATTGGCATTGAGATG--GATAGCAAATTTGGGGTCACCAGTT------GT--GTCACAGTAGTTTTAGTTATT--------TTCTAAC--CT-----G---------------------------G-TGTAGGGT-----TTT-T-------AGCTAATCTAACAAATAATCTGTCTAACCAACCAAATTTCTTT--A----------TCTCTTCTAA-----CCCT-TAACCCTAACAGACTTTGGGTCGTAGCGG------------TTACTATGCGTCC------AGTGAGATGCCCAGCTCACC
droVir3 scaffold_13049:6216252-6216540 + dvi_18614 AGAGCGACACGGAGTATGCCTACGGCACGCTCAACAGGAGCCAGAACAATGTATGAA--CAGGT-------TA--------TCC-TTTATC--------------------------TCTTAG-T--TTAAG-TTTAGAT--------------------TGTGCAC---CAACG--------AATTGGCATTGATTTA--ACTGACGAAAT------------------------------------------------------TCTCAC--CT-----GGTGTCGGTATCAATTTACTAGTAGCT-------------GTAGCTGT-------AACTGCTCTAAC-CCTAATCTGTCTAACCAACCCAATCTTT----G----------TCTCTT----GCTAACCTT-------TAACAGACTCTGGGTCGTGGAGGC---------GCTTATTGTAGCTCG------GGTGATATGTCCAGCCCGTC
droMoj3 scaffold_6680:4537816-4538105 + dmo_2345 AGAGCGACACGGAATATGCCTATGGCACGCTCAACAGGAGCCAGAACAATGTATGAA--CAGGT------TT----------CC-ATTTCC-------------------------GAC-TTGAACTTAGAT-TTT-------AG-----ACTT---TAGACTGCAC---CAATG--------AATTGGCATTG-----------------TTGAGA-C-----------------------------------------------TCTCAC--CT-----GGTGTCGGTG---------TAGTTGTT-------------GTAGTTGTA------ACTGAATCTAACC-CTAATCTCTCTAACCAACCAAATGTCTCTTT------------CTCTT----GCTAACCCT-------TAACAGACTCTGGGTCGTGGAGGA------GGTGCTTACTATGGCTCGCAGTCGGGCGATCTGCCCAGCTCGCC
droGri2 scaffold_15072:37178-37497 + AGAGCGACACCGAATACGCCTACAGCACACTCAATCGAAGCCAGAACAATGTATGAA--CAGGT------TT---------TCT-AG-------CTTAAGTTTAAACAATATTTATTAAGTTG-T--TA-------GTAT--TTG-----CTTT----TGACTGCAC---CAACAAAAC---AAATTGGCATTGATTTAATACCGATGA----------------------------------------AA--------------TTCTCAC--TT-----GGTGTCGGTG---------T---AGCT-------------GTAGCTGTAACT------GCTCCTAAC-CCTAATCTCTCTAACCAACCGATTCTCCGTTTC----------TCT-TTCTAA-----T-GC-TAACCCTAACAGATTGTGGGTCGCGGCGCA---------GTCTACTACGGCTCCCAGTCGGGTGATTTGCCAAGCTCGCC
droAna3 scaffold_13337:8073742-8074091 - AGAGCGACACGGAGTACGCCTATGGAACGCTCAACAAGAGCCAGAACAATGTATGAAGACACCC-CCTGCTTT-------CCCA-CTTTTC-------------------------GACTTTG-TTTTAGAT-TTTGTTT--TAG-----TTTT---GTGAGCGCACCTTGAGCGAATG---AAATTGGCATTGCGATC--GATGGCAAAAACGAGG-CACCAATT------GTAGTTTA-AGTAGTTCCA--------------T--TAAC--TT-----G------------------------GTGGAAGTGGG-------GCT-T-------AGCCAGGCTAACACGTAACCAGTCTAACCAGAAGCATTTCTCT-TC--TCTCTTCCACTCTTCTAA-----CCCG-TAACCCTAACAGACACTGGGTCGCAGCGGG---------GCTTACTACGGATCA--GCC-GGCGAGGTGCCCAGCTCGCC
droBip1 scf7180000396541:229789-230144 - AGAGCGACACGGAGTACGCCTATGGAACGCTCAACAAGAGCCAGAACAATGTATGAAGACACCCCCCTGCTTTTT-----CCCA-ACTTTC-------------------------GACTTTG-TTTTAGAT-TTTGTTT--TAG-----TTTT---GTGAGCGCACTTTGAGCGAATG---AAATTGGCATTGAGATC--GATGGCAAAAACGAGG-CACCAATT-----TGTAGTCTA-AGTAGTTTAT----------------TTAAC--TT-----G------------------------GTGGAAGTGGG-------GCT-T-------AGCCAGGCTAACACGTAACCAGTCTAACCAGGAGCATTTCTCT-TCTCTCTCTTCCTCTCTTCTAA-----CCCG-TAACCCTAACAGACACTGGGTCGCAGCGGG---------GCTTACTATGGATCC--A-CGGGCGAGGTGCCCAGCTCGCC
droKik1 scf7180000302474:424947-425273 - AAAGCGATACAGAGATTGCCTATGGAACGCTCAACAGGAGCCAGAACAATGTATGAGA-ATCCT------TTT-AAGCTC-TCC-TTTCAT--------------------------TTTTAG-T--TAGAT-TTT---------------------------GCAC---CAGCGAATG---AAATTGGCACTGAGATC--GAAGGCTAAATTGAGG-CACCAATT-----TCT--TTCC-AGTAGAGTAA----TTCGGAGGGATCCTAAC--CT-----G---------------------------G-TGTGGGGT-----------------TGGCCATCTAACACGTAACCAGTCTAACC-------TCTCTTC-TC----TC--TCTCTCTCCTAA-----CCCCGTAACCATAACAGACTTTGGGTCGCAGCGGAGGAGGAGGCGCTTACTACGGTGCC------GGGGAAGTGCCCAGCTCACC
droFic1 scf7180000453833:744309-744638 + AGAGCGACACGGAGTACGCCTACGGAACACTCAACAAGAGCCAAAACAATGTATGAGT-CACCT------CCT--------TGC-CTTTCC-------------------------CATCTTG-T--TAGAA-TTTGTATTTTAG-----TTTT---GTGAATGCAC---CGACGAAAG---AAATTGGCATTGAGATC--GATGACAAAATTTAGG-CACCATTT-----TGT--TTTCAAGTAGTCTAA--------------TTCTAAC--TTGGTTTG---------------------------G-TGTGGG-------TCC-T-------AGCCAATCTAACACGTAACCAGTCTAACCAGCAGTATCTCTTT-TC----------TCTCTCCTAA-----CCCCGTAACGCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGATGCCCACATCGCC
droEle1 scf7180000491268:123766-124102 - AGAGTGAACCCGAGTACGCCTACGGAACGCTCAACAAGAGCCAGAACAATGTATGAGA-AACGT------TTT--------TTC-ATTTAC-------------------------CAT-TTG-T--TAGAA-TTTGTAT-TTAG-----TTTG----CAAACGCAC---CGGCGAAAG--AAAATTGGCATTGAGATC--GATGGCAAAATTGAGG-CACCATTTTTCTTTCC--TTCA-AGTAGTCTAA--------------TTCTAAT--TT-----G---------------------------G-TGTGGG-CTTGGGGCT-T-------AGCCAATCTAACACGTAACCAGTCTAACCGGCAGTATCTCTCC-TC----TCT-TCTCTTCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAAATGCCCAGCTCGCC
droRho1 scf7180000779204:208513-208809 + AGAGCGACACGGAGTACCCATATGGAACGCTCAACAAGAGCCAAAACAATGTATGAGA-CACG--------------------A-ATGTTC-------------------------CACTTTG-T--TATAA-TTTGTAT--TAG--------------CAACGCAC---CAGCG----------TTGGCAATGAGATC--GATGGCAAAATTGAGG-CACCAGG--------------G-AGTAGCCTAA--------------TTCTAAT-TTT-----G---------------------------G-TGTGGG-------TTT-T-------AGCCAATCTAACACATAACCAGTCTAACCGGCAGTATCTCTTTTTC----------TCTCCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------GTACTACGGTTCC------GGCGAAATGCCCAGTTCTCC
droBia1 scf7180000302428:10499985-10500289 + AGAGTGACACGGAGTACGCCTAC------------AAGAGCCAGGACAATGTATGAAA-CA-GT------TTA--------TCC-ATTTTC-------------------------CATATTG-T--TAAAT-TTTGTAC--TAG-----TTTT----TGAGAGCAC---CAGCTAAGA---ATATTGGCATTGAGAT---GATGGCCAAATTGAGG-CACCATTT-----TCT--TTCT-CATAGTCTAA--------------TTCCAAT--TT-----G---------------------------G-TTTCGGGT-----------------AGCCAGTCTAACACATAACCAGTCTAACCGGCCGTATTTCTTTTTC----------TCTTCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------GGCGAGCTGCCCAGCTCACC
droTak1 scf7180000414445:149027-149336 - AGAGTGACACGGAGTACGCCTAC------------AGGAGCCAGGACAATGTATGAAA-CA-GC------TTC--------TCT-ATTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--AAG-----TTCT----TGAAAGCAC---CACCGAAACAAAAAATTGGCATTGAGATT--GATGGCGAAATTGAGG-CACCATTT-----TGT--TTCA-AGTAGTCTAA--------------TTCTAAT--TT-----G---------------------------G-TGTGGG-T-----------------AGACCATCTAACACGTAACCAGTCTAACCGGCAGTATTTCTTCTTC--------TCTCTCTTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------GGAGAGATGCCCAGTTCGCC
droEug1 scf7180000409524:95508-95811 - AGAGTGACACCGAATACGCCTAC------------AAGAGCCAGAACAATGTATGAAA-TA--T------TTA--------TCTATTTTTC-------------------------CACTTTG-T--TCAAA-TTTATAT--TAG-----TTTT----TGAGAGCAC---CAACAAAAG---AAATTGGCATTGAGATC--GATGACGAAATTTAGG-CACCAATT-----TGT--TTTA-AGTAGTCTAA--------------TTCTAAC--TT-----G---------------------------G-TTTCGG-A-----------------TGCCAGTCTAACACGTAACCAGTCTAACCAGCAGTATTTCTTT-TC----------TCTCTTCTAA-----CCCC-TAACCATAACAGACTTTGGGTCGCAGTGG------------TTATTACGGTTCC------AGCGAGATGCCCAGTTCGCC
dm3 chr3L:8565740-8566047 + AAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CATGT------TTA--------TCA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT----TGAAAGCAC---CAGCAAAAG---AAATTGGCATTGAGATG--AATTGCTAAATTGAAG-CACCAATT-----TGT--TTAA-AGTAGTCTAG--------------TTCTAATATCT-----G---------------------------G-TGTGGGGT-----------------AGCAAATCTAACACGTAACCGATCTAACCAGCAGTATTTCTTT-TC----------TCTCCTCTAA-----CCTC-TAATCATAACAGACTTTGGGTCGCAGCGG------------TTACTATGGTTCC------AGCGAAATGCCCAGTTCGCC
droSim2 3l:8355479-8355785 + dsi_7774 AAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGT------TTA--------TTA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT----TGAAAGCAC---CAGCAAATG---AAATTGGCATTGAGATG--AATGGCAAAATTGAAG-CACCAATT-----TGT--TTCA-AGTAGTCTAG--------------CTATAATATCT-----G---------------------------G-TCTGGG-T-----------------AGCAAATCTAACACGTAACCGATCTAACCGGCAGTATTTCTTT-TC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAAATGCGCAGTTCGCC
droSec2 scaffold_0:844992-845298 + AAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGT------TTA--------TCA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT----TGAGAGCAC---GAGCAAATG---AAATTGGCATTGAGATG--AATGGCAAAATTGAAG-CACCAATT-----TGT--TTCA-AGTAGTCTAG--------------CTATAATATCT-----G---------------------------G-TGTGGG-T-----------------AGCAAATCTAACACGTAACCGATCTAACCGGCAATATTTCTTT-TC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACATTGGGTCGCAGCGG------------TTACTACGGATCC------AGCGAAATGCACAGTTCGCC
droYak3 3L:3347626-3347930 - AAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGT------TTA--------TCT-TTTCTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT----TGAAAGCAC---GAGCAAATG---AAATTGGCATTGAGATA--GATGGCTAAATTGAGG-CACCAGTT-----TGT--TTCA-AGTAGTCTAA--------------TTATAAT--TT-----G---------------------------G-TGTGGG-C-----------------AGTCAATCTAACACTTAACCAATCTAACCGGCAGTATTTCTTT-TC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGCTGCCCAGTTCGCC
droEre2 scaffold_4784:5481436-5481737 - AAAGTGACACCGAGTACGCCAAT------------AGAAGCCAGAACAATGTATGAAA-CACGT------TTA--------CCT-TTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT----TGAAAGCAC---GAACAAAAG--AAAATTGGCATTGAGA------TGGCTAAATTGAAG-CACCATTT-----TGA--TTCA-AGTAGTCTAG--------------TTCTAAT--TT-----G---------------------------G-TGTGGG-T-----------------AGCCAATCTAACAAGTAACCAATCTAACCGGCAGTATTTCTTT-TC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGATGCCCAGTTCGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AGAGTGACACGGAGTACGCCTACGGGACGCTCAACAAGAGCCAGAACAATGTATGACA-AATAC------T-----------CC-ATTACC----------------------TACAACCATG-T--TAGAC-TTTGTTT-TTAG-----TTGATTGATGACTGCAC---CAGTGATTA---AGATTGGCATTGAGATT--GATGACGAAATTGAGG-CACCATTTATGTTTAT--T-----------------------------TCTAAT--TA-----G------------------TAGTCGGTGG-CGTGGG-------GCTCTAATTGGTCGAAAATCTAACACGTAACCTATTTAACCAACCGTATTTCTCT----CTTTCTCTCTCTCCTCTAA-----CCCG-TAACCCTAACAGACTCTGGGTCGCAGCGG------------CTACTATGCGTCT------GGGGAGATTCCCAGTTCGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................AACAAGAGCCAGAACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
...GTGACACGGAGTACGCCTACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................................................................................................................ATTGAGATT--GATGACGAAATTGAGG-C.................................................................................................................................................................................................................................................................................2611.0010000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATGCGTCT------GGGGAGATTCCC........2411.0010100000000
.......................GGGACGCTCAACAAGAGCCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
......ACACGGAGTACGCCTACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....GACACGGAGTACGCCTACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............GTACGCCTACGGGACGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.....GACACGGAGTACGCCTACGGGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGG------------CTACTATGCGTCT------....................2011.0010010000000
...................CTACGGGACGCTCAACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------CTACTATGCGTCT------GGG.................1811.0010100000000
.......CACGGAGTACGCCTACGGGACGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..................................................................................................................................................................TGCAC---CAGTGATTA---AGATTGC...............................................................................................................................................................................................................................................................................................................2120.5010100000000
droPer2
AGAGTGACACGGAATACGCCTACGGGACGCTCAACAAGAGCCAGAACAATGTATGACA-AATGC------T-----------CC-ATTACC----------------------TACAACCATG-T--TAGAC-TTTGTTT-TTAG-----TTGATTGATGACTGCAC---CAGTGATTA---AGATTGGCATTGAGATT--GATGACGAAATTGAGG-CACCATTTATGTTTAT--T-----------------------------TCTAAT--TA-----G------------------TAGTCGGTGG-CGTGGG-------GCTCTAATTGGTCGAAAATCTAACACGTAACCTATTTAACCAACCGTATTTCTCT----CTTTCTCTCTCTCCTCTAA-----CCCG-TAACCCTAACAGACTCTGGGTCGCAGCGG------------CTACTATGCGTCT------GGGGAGATTCCCAGTTCGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....GACACGGAATACGCCTACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCT------GGGGAGATTCCC........1911.001010000
.....GACACGGAATACGCCTACGGGACGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
......................................................................................................................................................................................................................................................................................................................................................................................TCTCT----CTTTCTCTCTCTCCT..............................................................................................2030.331000010
...............................CAACAAGAGCCAGAACAATACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.171100000
droWil2
AGAGCGACACGGAATATGCGTATGGAAACCACAACAAGAGTCAGAACAATGTATGAAC-CATTT---TTCTTT-------CAAA-GATTTCTAGTTTAGG-----------------GC-----TTTAATATTTTTGTTT--GAAAATAGTTAT---CTGACTGCAC---CAAC---------AATTGGCATTGAGATG--GATAGCAAATTTGGGGTCACCAGTT------GT--GTCACAGTAGTTTTAGTTATT--------TTCTAAC--CT-----G---------------------------G-TGTAGGGT-----TTT-T-------AGCTAATCTAACAAATAATCTGTCTAACCAACCAAATTTCTTT--A----------TCTCTTCTAA-----CCCT-TAACCCTAACAGACTTTGGGTCGTAGCGG------------TTACTATGCGTCC------AGTGAGATGCCCAGCTCACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................AACAAGAGTCAGAACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200020
.........................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCTAA-----CCCT-TAACCCTAACAG....................................................................2511.00110000
.....GACACGGAATATGCGTATGGAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGGGTCGTAGCGG------------TTACTA.................................2311.00110000
AGAGCGACACGGAATATGCGTATGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------TTACTATGCGTCC------AGTGAGATGC..........2511.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGGGTCGTAGCGG------------TTACTC.................................2311.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGTAGCGG------------TTACTATGC..............................2011.00100100
droVir3
AGAGCGACACGGAGTATGCCTACGGCACGCTCAACAGGAGCCAGAACAATGTATGAA--CAGGT-------TA--------TCC-TTTATC--------------------------TCTTAG-T--TTAAG-TTTAGAT--------------------TGTGCAC---CAACG--------AATTGGCATTGATTTA--ACTGACGAAAT------------------------------------------------------TCTCAC--CT-----GGTGTCGGTATCAATTTACTAGTAGCT-------------GTAGCTGT-------AACTGCTCTAAC-CCTAATCTGTCTAACCAACCCAATCTTT----G----------TCTCTT----GCTAACCTT-------TAACAGACTCTGGGTCGTGGAGGC---------GCTTATTGTAGCTCG------GGTGATATGTCCAGCCCGTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................CTACGGCACGCTCAACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ATCAATTTACTAGTAGCT-------------GTAG.......................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
........ACGGAGTATGCCTACGGCACGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.................................ACAGGAGCCAGAACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000010000
................................AACAGGAGCCAGAACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...................CTACGGCACGCTCAACAGGAGCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................TACTAGTAGCT-------------GTAGCTGT-------............................................................................................................................................................1911.001000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAGGC---------GCTTATTGTAGCTC...........................2311.001000000000000010000000000000000000000000000000000000000000000000
AGAGCGACACGGAGTATGCCTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTGTAGCTCG------GGTGAT..............2111.001001000000000000000000000000000000000000000000000000000000000000
.............GTATGCCTACGGCACGCTCAACAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................ATTTA--ACTGACGAAAT------------------------------------------------------TCTCAC--CT-----GGTGTCG............................................................................................................................................................................................................3111.001000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................TAGTAGCT-------------GTAGCTGT-------AACTGCT.....................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000010000
.................................................................................................................................................................................................................................................................................................................................................................ATCTGTCTAACCAACCCAATC......................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................................................................................................................ATCAATTTACTAGTAGCT-------------GTAA.......................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
..................................................GTATGAA--CAGGT-------TA--------TCC-TTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................TCAACAGGAGCCAGAACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------GCTTATTGTAGCTCG------GGC.................1911.001000000000000000000000000000001000000000000000000000000000000000
...............................CAACAGGAGCCAGAACAATACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.672101000000000000000000000000000000000000000000000000000000000000
.................................ACAGGAGCCAGAACAATACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071000000000000000000000000000000100000000000000000000000000000000
...............................CAACAGGAGCCAGAACAATACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000000000000000000000000000000000000000000000000000000000000
droMoj3
AGAGCGACACGGAATATGCCTATGGCACGCTCAACAGGAGCCAGAACAATGTATGAA--CAGGT------TT----------CC-ATTTCC-------------------------GAC-TTGAACTTAGAT-TTT-------AG-----ACTT---TAGACTGCAC---CAATG--------AATTGGCATTG-----------------TTGAGA-C-----------------------------------------------TCTCAC--CT-----GGTGTCGGTG---------TAGTTGTT-------------GTAGTTGTA------ACTGAATCTAACC-CTAATCTCTCTAACCAACCAAATGTCTCTTT------------CTCTT----GCTAACCCT-------TAACAGACTCTGGGTCGTGGAGGA------GGTGCTTACTATGGCTCGCAGTCGGGCGATCTGCCCAGCTCGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................AACAGGAGCCAGAACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003100110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGTCGTGGAGGA------GGTGCTTACT..................................2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTATGGCTCGCAGTCGGG..................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCTCGCAGTCGGGCGATC.............2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................CTCTTT------------CTCTT----GCTAACCCT-------TAACAG....................................................................2611.001000010
AGAGCGACACGGAATATGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..................................................GTATGAA--CAGGT------TT----------CC-ATTTCC-------------------------GAC-TTG.................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............................................................................................................................................................................................................................................................................................................AGTTGTT-------------GTAGTTGTA------ACT.........................................................................................................................................................1911.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGGAGGA------GGTGCTTACTATGGCT............................2711.001100000
..............................TCAACAGGAGCCAGAACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................CTCTT----GCTAACCCT-------TAACA.....................................................................1911.001000010
..........................................................................................................................................................................................................................................................................TCTCAC--CT-----GGTGTCGGTG---------TAGTTGTT-------------G..........................................................................................................................................................................2711.001000001
....CGACACGGAATATGCCTATGGCACGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................................AACAGGAGCCAGAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331000010
droGri2
AGAGCGACACCGAATACGCCTACAGCACACTCAATCGAAGCCAGAACAATGTATGAA--CAGGT------TT---------TCT-AG-------CTTAAGTTTAAACAATATTTATTAAGTTG-T--TA-------GTAT--TTG-----CTTT----TGACTGCAC---CAACAAAAC---AAATTGGCATTGATTTAATACCGATGA----------------------------------------AA--------------TTCTCAC--TT-----GGTGTCGGTG---------T---AGCT-------------GTAGCTGTAACT------GCTCCTAAC-CCTAATCTCTCTAACCAACCGATTCTCCGTTTC----------TCT-TTCTAA-----T-GC-TAACCCTAACAGATTGTGGGTCGCGGCGCA---------GTCTACTACGGCTCCCAGTCGGGTGATTTGCCAAGCTCGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....GACACCGAATACGCCTACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
....................TACAGCACACTCAATCGAAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
droAna3
AGAGCGACACGGAGTACGCCTATGGAACGCTCAACAAGAGCCAGAACAATGTATGAAGACACCC-CCTGCTTT-------CCCA-CTTTTC-------------------------GACTTTG-TTTTAGAT-TTTGTTT--TAG-----TTTT---GTGAGCGCACCTTGAGCGAATG---AAATTGGCATTGCGATC--GATGGCAAAAACGAGG-CACCAATT------GTAGTTTA-AGTAGTTCCA--------------T--TAAC--TT-----G------------------------GTGGAAGTGGG-------GCT-T-------AGCCAGGCTAACACGTAACCAGTCTAACCAGAAGCATTTCTCT-TC--TCTCTTCCACTCTTCTAA-----CCCG-TAACCCTAACAGACACTGGGTCGCAGCGGG---------GCTTACTACGGATCA--GCC-GGCGAGGTGCCCAGCTCGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............AGTACGCCTATGGAACGCTCAACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.............GTACGCCTATGGAACGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.GAGCGACACGGAGTACGCCTATGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
...................CTATGGAACGCTCAACAAGAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.....GACACGGAGTACGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCA--GCC-GGCGAGGTGCCCAGC.....2311.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACTGGGTCGCAGCGGG---------G........................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGGG---------GCTTACTACGG..............................2011.001010000
........................................................................................................................................................TT---GTGAGCGCACCTTGAGC..............................................................................................................................................................................................................................................................................................................................1911.001010000
...................CTATGGAACGCTCAACAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................................................................CA--------------T--TAAC--TT-----G------------------------GTGGAAGT..................................................................................................................................................................................1811.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCGCAGCGGG---------GCTTACTAC................................2311.001100000
..........GGAGTACGCCTATGGAACGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droBip1
AGAGCGACACGGAGTACGCCTATGGAACGCTCAACAAGAGCCAGAACAATGTATGAAGACACCCCCCTGCTTTTT-----CCCA-ACTTTC-------------------------GACTTTG-TTTTAGAT-TTTGTTT--TAG-----TTTT---GTGAGCGCACTTTGAGCGAATG---AAATTGGCATTGAGATC--GATGGCAAAAACGAGG-CACCAATT-----TGTAGTCTA-AGTAGTTTAT----------------TTAAC--TT-----G------------------------GTGGAAGTGGG-------GCT-T-------AGCCAGGCTAACACGTAACCAGTCTAACCAGGAGCATTTCTCT-TCTCTCTCTTCCTCTCTTCTAA-----CCCG-TAACCCTAACAGACACTGGGTCGCAGCGGG---------GCTTACTATGGATCC--A-CGGGCGAGGTGCCCAGCTCGCCSizeHit CountTotal NormTotal
No Reads
droKik1
AAAGCGATACAGAGATTGCCTATGGAACGCTCAACAGGAGCCAGAACAATGTATGAGA-ATCCT------TTT-AAGCTC-TCC-TTTCAT--------------------------TTTTAG-T--TAGAT-TTT---------------------------GCAC---CAGCGAATG---AAATTGGCACTGAGATC--GAAGGCTAAATTGAGG-CACCAATT-----TCT--TTCC-AGTAGAGTAA----TTCGGAGGGATCCTAAC--CT-----G---------------------------G-TGTGGGGT-----------------TGGCCATCTAACACGTAACCAGTCTAACC-------TCTCTTC-TC----TC--TCTCTCTCCTAA-----CCCCGTAACCATAACAGACTTTGGGTCGCAGCGGAGGAGGAGGCGCTTACTACGGTGCC------GGGGAAGTGCCCAGCTCACCSizeHit CountTotal NormTotal
No Reads
droFic1
AGAGCGACACGGAGTACGCCTACGGAACACTCAACAAGAGCCAAAACAATGTATGAGT-CACCT------CCT--------TGC-CTTTCC-------------------------CATCTTG-T--TAGAA-TTTGTATTTTAG-----TTTT---GTGAATGCAC---CGACGAAAG---AAATTGGCATTGAGATC--GATGACAAAATTTAGG-CACCATTT-----TGT--TTTCAAGTAGTCTAA--------------TTCTAAC--TTGGTTTG---------------------------G-TGTGGG-------TCC-T-------AGCCAATCTAACACGTAACCAGTCTAACCAGCAGTATCTCTTT-TC----------TCTCTCCTAA-----CCCCGTAACGCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGATGCCCACATCGCCSizeHit CountTotal NormTotal
No Reads
droEle1
AGAGTGAACCCGAGTACGCCTACGGAACGCTCAACAAGAGCCAGAACAATGTATGAGA-AACGT------TTT--------TTC-ATTTAC-------------------------CAT-TTG-T--TAGAA-TTTGTAT-TTAG-----TTTG----CAAACGCAC---CGGCGAAAG--AAAATTGGCATTGAGATC--GATGGCAAAATTGAGG-CACCATTTTTCTTTCC--TTCA-AGTAGTCTAA--------------TTCTAAT--TT-----G---------------------------G-TGTGGG-CTTGGGGCT-T-------AGCCAATCTAACACGTAACCAGTCTAACCGGCAGTATCTCTCC-TC----TCT-TCTCTTCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAAATGCCCAGCTCGCCSizeHit CountTotal NormTotal
No Reads
droRho1
AGAGCGACACGGAGTACCCATATGGAACGCTCAACAAGAGCCAAAACAATGTATGAGA-CACG--------------------A-ATGTTC-------------------------CACTTTG-T--TATAA-TTTGTAT--TAG--------------CAACGCAC---CAGCG----------TTGGCAATGAGATC--GATGGCAAAATTGAGG-CACCAGG--------------G-AGTAGCCTAA--------------TTCTAAT-TTT-----G---------------------------G-TGTGGG-------TTT-T-------AGCCAATCTAACACATAACCAGTCTAACCGGCAGTATCTCTTTTTC----------TCTCCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------GTACTACGGTTCC------GGCGAAATGCCCAGTTCTCCSizeHit CountTotal NormTotal
No Reads
droBia1
AGAGTGACACGGAGTACGCCTAC------------AAGAGCCAGGACAATGTATGAAA-CA-GT------TTA--------TCC-ATTTTC-------------------------CATATTG-T--TAAAT-TTTGTAC--TAG-----TTTT----TGAGAGCAC---CAGCTAAGA---ATATTGGCATTGAGAT---GATGGCCAAATTGAGG-CACCATTT-----TCT--TTCT-CATAGTCTAA--------------TTCCAAT--TT-----G---------------------------G-TTTCGGGT-----------------AGCCAGTCTAACACATAACCAGTCTAACCGGCCGTATTTCTTTTTC----------TCTTCTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------GGCGAGCTGCCCAGCTCACCSizeHit CountTotal NormTotal
No Reads
droTak1
AGAGTGACACGGAGTACGCCTAC------------AGGAGCCAGGACAATGTATGAAA-CA-GC------TTC--------TCT-ATTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--AAG-----TTCT----TGAAAGCAC---CACCGAAACAAAAAATTGGCATTGAGATT--GATGGCGAAATTGAGG-CACCATTT-----TGT--TTCA-AGTAGTCTAA--------------TTCTAAT--TT-----G---------------------------G-TGTGGG-T-----------------AGACCATCTAACACGTAACCAGTCTAACCGGCAGTATTTCTTCTTC--------TCTCTCTTCTAA-----CCCC-TAACCCTAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------GGAGAGATGCCCAGTTCGCCSizeHit CountTotal NormTotal
No Reads
droEug1
AGAGTGACACCGAATACGCCTAC------------AAGAGCCAGAACAATGTATGAAA-TA--T------TTA--------TCTATTTTTC-------------------------CACTTTG-T--TCAAA-TTTATAT--TAG-----TTTT----TGAGAGCAC---CAACAAAAG---AAATTGGCATTGAGATC--GATGACGAAATTTAGG-CACCAATT-----TGT--TTTA-AGTAGTCTAA--------------TTCTAAC--TT-----G---------------------------G-TTTCGG-A-----------------TGCCAGTCTAACACGTAACCAGTCTAACCAGCAGTATTTCTTT-TC----------TCTCTTCTAA-----CCCC-TAACCATAACAGACTTTGGGTCGCAGTGG------------TTATTACGGTTCC------AGCGAGATGCCCAGTTCGCCSizeHit CountTotal NormTotal
No Reads
dm3
AAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CATGT------TTA--------TCA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT----TGAAAGCAC---CAGCAAAAG---AAATTGGCATTGAGATG--AATTGCTAAATTGAAG-CACCAATT-----TGT--TTAA-AGTAGTCTAG--------------TTCTAATATCT-----G---------------------------G-TGTGGGGT-----------------AGCAAATCTAACACGTAACCGATCTAACCAGCAGTATTTCTTT-TC----------TCTCCTCTAA-----CCTC-TAATCATAACAGACTTTGGGTCGCAGCGG------------TTACTATGGTTCC------AGCGAAATGCCCAGTTCGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................TAA-----CCTC-TAATCATAACAGACT.................................................................2219.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGG------------TTACTATGGTTC...........................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000020000000000000000000000000010000000000000000
......ACACCGAGTACGCCTAT------------AGAAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TTACTATGGTTCC------AGCGAAA.............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TAT------------AGAAGCCAGAACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGTCGCAGCGG------------TTAC...................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CACCGAGTACGCCTAT------------AGAAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGTCGCAGCGG------------TTA....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG------------TTACTATGGTTCC------AGC.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AGCCAGAACAATGTATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TACGCCTAT------------AGAAGCCAGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACCGAGTACGCCTAT------------AGAAGCCAGAACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GACACCGAGTACGCCTAT------------AGAAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAAGTGACACCGAGTACGCCTAT------------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CACGTAACCGATCTAACCA..............................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGTACGCCTAT------------AGAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGGGTCGCAGCGG------------TT.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............TACGCCTAT------------AGAAGCCAGAACAATACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAGTACGCCTAT------------AGAAGCCAGAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AG--------------TTCTAATATCT-----G---------------------------G-TGTGGGGT-----------------AGCA........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..AGTGACACCGAGTACGCCTAT------------AGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTTGGGTCGCAGCGG------------.......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................ATTGGCATTGAGATG--AATTGC.............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......CACCGAGTACGCCTAT------------AGAAGCCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGACACCGAGTACGCCTAT------------AGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAGTGACACCGAGTACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG------------TTACTATGGTTCC------AGCG................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAAATGCCCAGTTCGC.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAAGTGACACCGAGTACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GCAAATCTAACACGTAACCGA......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCAGCGG------------TTACTATGGT.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------TTACTATGGTTCC------AGC.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG------------TTACTATGGTTCC------....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGG------------TTACTATGGTTCC------....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC------AGCGAAATGCCCAGTT....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................ACACGTAACCGATCTAACCAGC............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGACTTTGGGTCGCAGCGG------------T......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGTCGCAGCGG------------TTACTATGGTT............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GTACGCCTAT------------AGAAGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGTTCC------AGCGAAATGCCCAGTT....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------TTACTATGGTTCC------AGCGAAA.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................CAATT-----TGT--TTAA-AGTAGT.....................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
AAAGTGACACCGAGTACGCCTAT------------AGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATGGTTCC------AGCGAAATGC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACCGAGTACGCCTAT------------AGAAGCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................................................................................................................................G-TGTGGGGT-----------------AGCAAATCTAA.................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACGCCTAT------------AGAAGCCAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGTACGCCTAT------------AGAAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................ATATCT-----G---------------------------G-TGTGGGGT-----------------AGC.........................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................CTAT------------AGAAGCCAGAACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTCC------AGCGAAATGCCCA.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGG------------TTACTATGGTT............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TTACTATGGTTCC------AGCGAAATGCCCAG......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.AAGTGACACCGAGTACGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCGCAGCGG------------TTACTA.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AA-----CCTC-TAATCATAACAG....................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCC------AGCGAAATGCCCAGT.....2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................T-----G---------------------------G-TGTGGGGT-----------------AGCAAATCTAACAC..............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGGTCGCAGCGG------------TT.....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............ACGCCTAT------------AGAAGCCAGAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TGAGATG--AATTGCTAAATTGA.....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGG------------TTACTATGGTTCC------AGCG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG------------TTACTATGGTTCC------AGCGAA..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TATCT-----G---------------------------G-TGTGGGGT-----------------AGCAA.......................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CTTT-TC----------TCTCCTCTAA-----CG...................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGT------TTA--------TTA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT----TGAAAGCAC---CAGCAAATG---AAATTGGCATTGAGATG--AATGGCAAAATTGAAG-CACCAATT-----TGT--TTCA-AGTAGTCTAG--------------CTATAATATCT-----G---------------------------G-TCTGGG-T-----------------AGCAAATCTAACACGTAACCGATCTAACCGGCAGTATTTCTTT-TC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAAATGCGCAGTTCGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............GTACGCCTAT------------AGAAGCCAGAACAATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200200000000000000
....................TAT------------AGAAGCCAGAACAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
.............GTACGCCTAT------------AGAAGCCAGAACAATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.............GTACGCCTAT------------AGAAGCCAGAACAATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
......ACACCGAGTACGCCTAT------------AGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.....................AT------------AGAAGCCAGAACAATGTATGAAA-C................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
...............................................................................................................................................................................................TTGAGATG--AATGGCAAAATTG......................................................................................................................................................................................................................................................................................2111.00100000100000000000
droSec2
AAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGT------TTA--------TCA-CTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT----TGAGAGCAC---GAGCAAATG---AAATTGGCATTGAGATG--AATGGCAAAATTGAAG-CACCAATT-----TGT--TTCA-AGTAGTCTAG--------------CTATAATATCT-----G---------------------------G-TGTGGG-T-----------------AGCAAATCTAACACGTAACCGATCTAACCGGCAATATTTCTTT-TC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACATTGGGTCGCAGCGG------------TTACTACGGATCC------AGCGAAATGCACAGTTCGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGG------------TTACTACGGATCC------AGC.................2411.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC------AGCGAAATGCACAGTT....2011.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TTACTACGGATCC------AGCGAAATGCACA.......2711.0011000
..................................................................................................................................................................AGCAC---GAGCAAATG---AAATTGGC..............................................................................................................................................................................................................................................................................................................2211.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGG------------TTACTACGGATCC------AGCG................2511.0010001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACGGATCC------AGCGAAATGCACAGT.....2611.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACGGATCC------AGCGTT..............1911.0010001
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGG------------TTACTACGGATCC------AG..................2411.0010001
..........................................................................................................................................................................GAGCAAATG---AAATTGGCATTGAGATG--...................................................................................................................................................................................................................................................................................................2611.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGG------------TTACTACGGATC...........................2111.0011000
droYak3
AAAGTGACACCGAGTACGCCTAT------------AGAAGCCAGAACAATGTATGAAA-CACGT------TTA--------TCT-TTTCTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT----TGAAAGCAC---GAGCAAATG---AAATTGGCATTGAGATA--GATGGCTAAATTGAGG-CACCAGTT-----TGT--TTCA-AGTAGTCTAA--------------TTATAAT--TT-----G---------------------------G-TGTGGG-C-----------------AGTCAATCTAACACTTAACCAATCTAACCGGCAGTATTTCTTT-TC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGCTGCCCAGTTCGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................AGTT-----TGT--TTCA-AGTAGTCTAA--------------...................................................................................................................................................................................................................................2111.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGGTTCC------AGCGAGCTGCCCA.......2311.00100000010000
...............................................................................................................................................................................AATG---AAATTGGCATTGAGATA--GAT................................................................................................................................................................................................................................................................................................2411.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TAA-----CCTC-TAACCATAACAG....................................................................1911.00100010000000
droEre2
AAAGTGACACCGAGTACGCCAAT------------AGAAGCCAGAACAATGTATGAAA-CACGT------TTA--------CCT-TTTTTC-------------------------CACATTG-T--TATAT-TTTGTAT--TAG-----TCTT----TGAAAGCAC---GAACAAAAG--AAAATTGGCATTGAGA------TGGCTAAATTGAAG-CACCATTT-----TGA--TTCA-AGTAGTCTAG--------------TTCTAAT--TT-----G---------------------------G-TGTGGG-T-----------------AGCCAATCTAACAAGTAACCAATCTAACCGGCAGTATTTCTTT-TC----------TCTCTTCTAA-----CCTC-TAACCATAACAGACTTTGGGTCGCAGCGG------------TTACTACGGTTCC------AGCGAGATGCCCAGTTCGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...GTGACACCGAGTACGCCAAT------------AGAAGCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.........CCGAGTACGCCAAT------------AGAAGCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGG------------TTACTACGGTTCC------AGC.................2411.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACGGTTCC------AGCGAGA.............1911.0010001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TTACTACGGTTCC------AGCGAGA.............2111.0010100000
.........................................................................................................................................................................................................................................................................TTCTAAT--TT-----G---------------------------G-TGTGGG-T-----------------AGC.........................................................................................................................................................2111.0011000000

Generated: 05/18/2015 at 05:40 AM