ID:

dps_2847

 Coordinate:

XL_group3a:1388845-1388908 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6

Flybase annnotation

CDS [Dpse\GA22373-cds]; exon [dpse_GLEANR_10335:4]; exon [dpse_GLEANR_10335:3]; CDS [Dpse\GA22373-cds]; intron [Dpse\GA22373-in]

Repeatable elements

NameClassFamilyStrand
BilboLINELOA+
mature
  1. Unknown_group_72:41503-41524 +
  2. Unknown_group_11:12340-12361 +
  3. Unknown_group_111:826-847 -
  4. Unknown_singleton_1291:260-281 -
  5. dps_1864  Unknown_group_216:2301-2322 +
  6. Unknown_group_222:596-617 -
  7. dps_2847  XL_group3a:1388854-1388875 +
  8. Unknown_singleton_3529:73-94 +
  9. Unknown_singleton_478:1182-1203 -
  10. Unknown_singleton_1382:1789-1810 -
  11. Unknown_singleton_177:28-49 -
  12. Unknown_singleton_3935:1131-1152 -
star

Sense Strand Reads

##################################################----------------------------------------------------------------##################################################
CCGCTTGGACGCGAGCGGAGCAGACAGGCCTAGTCCAGGAGCCTTGGGTGGTAGGAAACAAGGTCTGTGGATTGGGGACGAGGGAATACAAGATCATTGTATCCAAAAATGAAGGTAAGACCCGGACCTGCATACTTGCGAGAAAGCACCCAAATATCTTTCTG
**************************************************...(((.((((((((((((..(((....))).....))).))))).)))).)))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 M059
embryo
 GSM343916
embryo
...........................................................AAGGTCTGTGGATTGGGGACGA................................................................................... 22 0 12 11.58 139 112 23 4 0 0 0
...........................................................AAGGTCTGTGGATTGGGGACGAG.................................................................................. 23 0 9 9.22 83 51 29 0 3 0 0
...........................................................AAGGTCTGTGGATTGGGGACG.................................................................................... 21 0 12 5.33 64 55 7 1 1 0 0
...........................................................AAGGTCTGTGGATTGGGGACGAGG................................................................................. 24 0 9 4.56 41 30 9 1 1 0 0
.........................................................ACAAGGTCTGTGGATTGGGGT...................................................................................... 21 1 1 3.00 3 0 0 3 0 0 0
.......................................................AAACAAGGTCTGTGGATTGGGG....................................................................................... 22 0 1 3.00 3 0 3 0 0 0 0
.....................................................GGAAACAAGGTCTGTGGATTG.......................................................................................... 21 0 1 3.00 3 0 3 0 0 0 0
...........................................................................................................AATGAAGGTAAGACCCGGACCT................................... 22 0 2 2.50 5 4 0 0 1 0 0
...........................................................................................................AATGAAGGTAAGACCCGGACCTG.................................. 23 0 2 2.50 5 2 2 0 0 1 0
...........................................................................................................AATGAAGGTAAGACCCGGAC..................................... 20 0 2 2.00 4 4 0 0 0 0 0
.....TGGACGCGAGCGGAGCAGAC........................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0
....TTGGACGCGAGCGGAGCAGT............................................................................................................................................ 20 1 1 2.00 2 0 0 2 0 0 0
...........................................................AAGGTCTGTGGATTGGGGAC..................................................................................... 20 0 12 1.83 22 10 7 0 2 2 1
...........................................................AAGGTCTGTGGATTGGGGA...................................................................................... 19 0 12 1.83 22 19 2 0 0 1 0
...........................................................................................................AATGAAGGTAAGACCCGGACCTGC................................. 24 0 2 1.50 3 2 0 0 0 0 1
...........................................................................................................AATGAAGGTAAGACCCGGACC.................................... 21 0 2 1.50 3 3 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGG....................................................................................... 18 0 12 1.42 17 13 2 0 2 0 0
...................................................................................................................TAAGACCCGGACCTGCATACTTGCGA....................... 26 0 2 1.00 2 1 1 0 0 0 0
........................................................AACAAGGTCTGTGGATTGGGG....................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........CGAGCGGAGCAGACAGGCC...................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
............................................................AGGTCTGTGGATTGGGGACGA................................................................................... 21 0 12 1.00 12 12 0 0 0 0 0
.........................................................ACAAGGTCTGTGGATTGGGGACA.................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
....TTGGACGCGAGCGGAGCAGACAGG........................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................TGCGAGAAAGCACCCAAATATCTTTC.. 26 0 1 1.00 1 1 0 0 0 0 0
...........................................TTGGGTGGTAGGAAACAAGGTC................................................................................................... 22 0 3 1.00 3 0 3 0 0 0 0
................................................TGGTAGGAAACAAGGTCTGT................................................................................................ 20 0 3 1.00 3 0 3 0 0 0 0
...........CGAGCGGAGCAGACAGGTTT..................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0
.........................................................ACAAGGTCTGTGGATTGGGG....................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
...CTTGGACGCGAGCGGAGCAGT............................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0
......................................................GAAACAAGGTCTGTGGATTG.......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGACGAGGG................................................................................ 25 0 9 0.89 8 4 4 0 0 0 0
............................................................AGGTCTGTGGATTGGGGACGAG.................................................................................. 22 0 9 0.67 6 6 0 0 0 0 0
.................................................GGTAGGAAACAAGGTCTGTGG.............................................................................................. 21 0 3 0.67 2 0 2 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGACGAA.................................................................................. 23 1 15 0.53 8 5 3 0 0 0 0
...........................................................................................................AATGAAGGTAAGACCCGGACCTGCATC.............................. 27 1 2 0.50 1 1 0 0 0 0 0
...........................................TTGGGTGGTAGGAAACAAGGT.................................................................................................... 21 0 4 0.50 2 2 0 0 0 0 0
..................................................................................................................GTAAGACCCGGACCTGCATAC............................. 21 0 2 0.50 1 0 1 0 0 0 0
..............................TAGTCCAGGAGCCTTGGGTGG................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................................AATGAAGGTAAGACCCGGACCTGCA................................ 25 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................AAATGAAGGTAAGACCCGGA...................................... 20 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................................AATGAAGGTAAGACCCGGA...................................... 19 0 2 0.50 1 1 0 0 0 0 0
............................CCTAGTCCAGGAGCCTTGGGT................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGACGAGT................................................................................. 24 1 9 0.44 4 2 2 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGACGAGGGA............................................................................... 26 0 9 0.44 4 3 1 0 0 0 0
............................................................AGGTCTGTGGATTGGGGACG.................................................................................... 20 0 12 0.42 5 5 0 0 0 0 0
....................................................AGGAAACAAGGTCTGTGGATT........................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
..............................................GGTGGTAGGAAACAAGGTCTGTGG.............................................................................................. 24 0 3 0.33 1 1 0 0 0 0 0
..........................................................CAAGGTCTGTGGATTGGGGACGA................................................................................... 23 0 11 0.27 3 0 3 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGA....................................................................................... 18 1 12 0.25 3 2 0 0 1 0 0
..................................................GTAGGAAACAAGGTCTGTGGA............................................................................................. 21 0 4 0.25 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGG........................................................................................ 17 0 12 0.25 3 0 2 1 0 0 0
...........................................................AAGGTCTGTGGATTGGGGACGAC.................................................................................. 23 1 12 0.25 3 0 3 0 0 0 0
...............................................................TCTGTGGATTGGGGACGAGGG................................................................................ 21 0 9 0.22 2 0 0 1 1 0 0
...........................................................AAGGTCTGTGGATTGGGGACGAGA................................................................................. 24 1 9 0.22 2 2 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGACGAAG................................................................................. 24 1 15 0.20 3 3 0 0 0 0 0
...................................................................TGGATTGGGGACGAGG................................................................................. 16 0 11 0.18 2 0 0 2 0 0 0
..........................................................CAAGGTCTGTGGATTGGGGA...................................................................................... 20 0 11 0.18 2 1 0 0 1 0 0
..........................................................CAAGGTCTGTGGATTGGGGACG.................................................................................... 22 0 11 0.18 2 2 0 0 0 0 0
.............................................................GGTCTGTGGATTGGGGACGA................................................................................... 20 0 12 0.17 2 2 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGACGT................................................................................... 22 1 12 0.17 2 1 1 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGGCGA................................................................................... 22 1 12 0.17 2 1 1 0 0 0 0
................................................................................AGGGAATACAAGATCATTGTATC............................................................. 23 0 7 0.14 1 1 0 0 0 0 0
............................................................................GACGAGGGAATACAAGATCATTGTATC............................................................. 27 0 7 0.14 1 1 0 0 0 0 0
................................................................CTGTGGATTGGGGACG.................................................................................... 16 0 14 0.14 2 0 0 2 0 0 0
................................................................................AGGGAATACAAGATCATTGTATCC............................................................ 24 0 7 0.14 1 1 0 0 0 0 0
.................................................................TGTGGATTGGGGACGA................................................................................... 16 0 14 0.14 2 0 2 0 0 0 0
...........................................................AAGGTTTGTGGATTGGG........................................................................................ 17 1 14 0.14 2 0 2 0 0 0 0
........................................................................TGGGGACGAGGGAATACAAGATCATTAA................................................................ 28 2 8 0.13 1 1 0 0 0 0 0
.................................................................................GGGAATACAAGATCATTG................................................................. 18 0 8 0.13 1 1 0 0 0 0 0
............................................................................GACGAGGGAATACAAGATCATTG................................................................. 23 0 8 0.13 1 1 0 0 0 0 0
.................................TCCAGGAGCCTTGGGTGGTAG.............................................................................................................. 21 0 16 0.13 2 0 2 0 0 0 0
...............................................................................GAGGGAATACAAGATCATTGTA............................................................... 22 0 8 0.13 1 1 0 0 0 0 0
................................................................................AGGGAATACAAGATCATTG................................................................. 19 0 8 0.13 1 1 0 0 0 0 0
.................................................................................GGGAATACAAGATCATTA................................................................. 18 1 8 0.13 1 0 1 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGATGAG.................................................................................. 23 1 9 0.11 1 0 0 0 1 0 0
...........................................................AAGGTCTGTGGATTGGGGATGAGG................................................................................. 24 1 9 0.11 1 1 0 0 0 0 0
...........................................................AAGGCCTGTGGATTGGGGACGAG.................................................................................. 23 1 9 0.11 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGCCGAG.................................................................................. 23 1 9 0.11 1 0 1 0 0 0 0
.................................................................TGTGGATTGGGGACGAGGGAA.............................................................................. 21 0 9 0.11 1 0 0 1 0 0 0
................................................................CTGTGGATTGGGGACGAGGGAATAC........................................................................... 25 0 9 0.11 1 1 0 0 0 0 0
...............................................................TCTGTGGATTGGGGGCGAGGG................................................................................ 21 1 9 0.11 1 0 0 1 0 0 0
...............................................................TCTGTGGATTGGGGACGAGGGAA.............................................................................. 23 0 9 0.11 1 0 1 0 0 0 0
..................................................................GTGGATTGGGGACGAGGGAATAC........................................................................... 23 0 9 0.11 1 0 1 0 0 0 0
............................................................AGGTCTGTGGATTGGGGACGAGGGAA.............................................................................. 26 0 9 0.11 1 1 0 0 0 0 0
...............................................................TCTGTGGATTGGGGACGAGGGAAT............................................................................. 24 0 9 0.11 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGGTTGGGGACGAG.................................................................................. 23 1 9 0.11 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGACTGGGGACGAG.................................................................................. 23 1 9 0.11 1 1 0 0 0 0 0
...........................................................AAGGCCTGTGGATTGGGGACGAGG................................................................................. 24 1 9 0.11 1 0 0 0 1 0 0
..................................................................GTGGATTGGGGACGAGG................................................................................. 17 0 9 0.11 1 0 1 0 0 0 0
...........................................................CAGGTCTGTGGATTGCGGACGAGG................................................................................. 24 2 9 0.11 1 1 0 0 0 0 0
............................................................AGGTCTGTGGATTGGGGACGAGG................................................................................. 23 0 9 0.11 1 1 0 0 0 0 0
...................................................................TGGATTGGGGACGAGGGAATACAA......................................................................... 24 0 10 0.10 1 0 1 0 0 0 0
..........................................................CAAGGTCTGTGGATTGGGGAC..................................................................................... 21 0 11 0.09 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGAA..................................................................................... 20 1 12 0.08 1 1 0 0 0 0 0
..............................................................GTCTGTGGATTGGGGACG.................................................................................... 18 0 12 0.08 1 0 1 0 0 0 0
...........................................................AAGGGCTGTGGATTGGGGACGA................................................................................... 22 1 12 0.08 1 0 1 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGACGG................................................................................... 22 1 12 0.08 1 0 1 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGT...................................................................................... 19 1 12 0.08 1 0 0 0 0 0 1
............................................................AGGTCTGTGGATTGGGGA...................................................................................... 18 0 12 0.08 1 1 0 0 0 0 0
............................................................GGGTCTGTGGATTGGGGAC..................................................................................... 19 1 13 0.08 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGATG.................................................................................... 21 1 13 0.08 1 1 0 0 0 0 0
..........................................................TAAGGTCTGTGGATTGGGGAC..................................................................................... 21 1 13 0.08 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGGGATGA................................................................................... 22 1 13 0.08 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGACTGGGGACG.................................................................................... 21 1 13 0.08 1 1 0 0 0 0 0
................................................................CTGTGGATTGGGGACGA................................................................................... 17 0 14 0.07 1 0 0 1 0 0 0
..................................................................GTGGATTGGGGACGAGTT................................................................................ 18 2 15 0.07 1 1 0 0 0 0 0
.................................TCCAGGAGCCTTGGGTGGTAGG............................................................................................................. 22 0 16 0.06 1 1 0 0 0 0 0
.................................TCCAGGAGCCTTGGGTGGTAGA............................................................................................................. 22 1 16 0.06 1 1 0 0 0 0 0
...................................CAGGAGCCTTGGGTGGTAGG............................................................................................................. 20 0 17 0.06 1 1 0 0 0 0 0
...........................................................AAGGTCTGTGGATTGGTA....................................................................................... 18 2 19 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GGCGAACCTGCGCTCGCCTCGTCTGTCCGGATCAGGTCCTCGGAACCCACCATCCTTTGTTCCAGACACCTAACCCCTGCTCCCTTATGTTCTAGTAACATAGGTTTTTACTTCCATTCTGGGCCTGGACGTATGAACGCTCTTTCGTGGGTTTATAGAAAGAC
**************************************************...(((.((((((((((((..(((....))).....))).))))).)))).)))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 GSM343916
embryo
 SRR902010
ovaries
 M062
head
 SRR902011
testis
............................................................TCCAGACACCTAACCCCTGCTCCCTT.............................................................................. 26 0 9 18.33 165 132 21 7 4 1 0
.............................................................CCAGACACCTAACCCCTGCTCCCTT.............................................................................. 25 0 9 17.67 159 120 35 1 2 0 1
.............................................................CCAGACACCTAACCCCTGCTCCCTTAT............................................................................ 27 0 9 7.00 63 38 23 1 0 1 0
............................................................TCCAGACACCTAACCCCTGCTCCCT............................................................................... 25 0 9 5.67 51 45 6 0 0 0 0
..............................................................CAGACACCTAACCCCTGCTCCCTT.............................................................................. 24 0 9 3.89 35 29 6 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCCCTTAT............................................................................ 28 0 9 2.67 24 21 2 1 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCCCTTATGT.......................................................................... 29 0 9 2.56 23 16 5 0 2 0 0
.............................................................CCAGACACCTAACCCCTGCTCCCT............................................................................... 24 0 9 2.56 23 19 4 0 0 0 0
.................................AGGTCCTCGGAACCCACCATCCT............................................................................................................ 23 0 16 2.06 33 30 1 0 0 0 2
......CCTGCGCTCGCCTCGTCTGTCCGGAT.................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................AGTAACATAGGTTTTTACTTCCAT............................................... 24 0 2 1.50 3 2 0 0 1 0 0
..............................................................CAGACACCTAACCCCTGCTCCCTTAT............................................................................ 26 0 9 1.33 12 7 4 1 0 0 0
..............................................................CAGACACCTAACCCCTGCTCCCTTATGT.......................................................................... 28 0 9 1.33 12 10 2 0 0 0 0
.................................................................ACACCTAACCCCTGCTCCCTTATGT.......................................................................... 25 0 9 1.22 11 10 1 0 0 0 0
..........................CCGGATCAGGTCCTCGGAACCCACC................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................GGCCTGGACGTATGAACGCTCTTTCGT................ 27 0 1 1.00 1 1 0 0 0 0 0
.........GCGCTCGCCTCGTCTGTCC........................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
.............................................CCCACCATCCTTTGTTCCAGACAC............................................................................................... 24 0 3 1.00 3 2 1 0 0 0 0
................CCTCGTCTGTCCGGATCAGGTCCT............................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
................CCTCGTCTGTCCGGATCAGGT............................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........................CGGATCAGGTCCTCGGAACCCAC.................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
...........GCTCGCCTCGTCTGTCCGGAT.................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................TCGTTCTTTCGTGGGGTTATA....... 21 3 1 1.00 1 0 0 1 0 0 0
..........................CCGGATCAGGTCCTCGGAACC..................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0
.........................TCCGGATCAGGTCCTCGGAACCCACCA................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................CTAGTAACATAGGTTTTTACTTCCAT............................................... 26 0 2 1.00 2 2 0 0 0 0 0
................................CAGGTCCTCGGAACCCACCATCCTTTGTT....................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
..........................CCGGATCAGGTCCTCGGAACCCAC.................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................GTATGAACGCTCTTTCGTGGGTTT.......... 24 0 1 1.00 1 0 0 1 0 0 0
................CCTCGTCTGTCCGGATCAGGTC.............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................GGACGTATGAACGCTCTTTCGTGGGTT........... 27 0 1 1.00 1 1 0 0 0 0 0
................................CAGGTCCTCGGAACCCACCATCCT............................................................................................................ 24 0 2 1.00 2 2 0 0 0 0 0
.........GCGCTCGCCTCGTCTGTCCGGATCAG................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
........TGCGCTCGCCTCGTCTGTCCGGAT.................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................................CTAACCCCTGCTCCCTTATGTTCT....................................................................... 24 0 9 0.89 8 8 0 0 0 0 0
...................................................................ACCTAACCCCTGCTCCCTTATGTTCT....................................................................... 26 0 9 0.89 8 6 0 0 2 0 0
................................................................GACACCTAACCCCTGCTCCCTTATGT.......................................................................... 26 0 9 0.89 8 8 0 0 0 0 0
...........................................................................CCTGCTCCCTTATGTTCTAGTAACAT............................................................... 26 0 8 0.88 7 7 0 0 0 0 0
....................................................................CCTAACCCCTGCTCCCTTATGT.......................................................................... 22 0 10 0.80 8 8 0 0 0 0 0
...............................................................AGACACCTAACCCCTGCTCCCTTATGT.......................................................................... 27 0 9 0.78 7 6 0 0 0 0 1
................................................................AACACCTAACCCCTGCTCCCTTATGT.......................................................................... 26 1 9 0.78 7 7 0 0 0 0 0
....................................................................CCTAACCCCTGCTCCCTTATGTTCT....................................................................... 25 0 9 0.78 7 5 0 0 2 0 0
..........................................................GTTCCAGACACCTAACCCCTGCTCCCT............................................................................... 27 0 8 0.75 6 2 1 0 3 0 0
................................................................GACACCTAACCCCTGCTCCCTTAT............................................................................ 24 0 9 0.67 6 4 0 0 1 0 1
..................................................................CACCTAACCCCTGCTCCCTTATGT.......................................................................... 24 0 9 0.67 6 3 2 0 0 0 1
............................................ACCCACCATCCTTTGTTCCAGACAC............................................................................................... 25 0 3 0.67 2 1 1 0 0 0 0
............................................................CCCAGACACCTAACCCCTGCTCCCTT.............................................................................. 26 1 9 0.56 5 0 5 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCCC................................................................................ 24 0 9 0.56 5 5 0 0 0 0 0
...............................................................AGACACCTAACCCCTGCTCCCTT.............................................................................. 23 0 9 0.56 5 4 0 0 0 0 1
...................................GTCCTCGGAACCCACCATCCT............................................................................................................ 21 0 17 0.53 9 9 0 0 0 0 0
.........................................GGAACCCACCATCCTTTGTTCCAGACA................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0
...................................................................ACCTAACCCCTGCTCCCTTATGT.......................................................................... 23 0 10 0.50 5 5 0 0 0 0 0
................................CAGGTCCTCGGAACCCACCATCC............................................................................................................. 23 0 2 0.50 1 1 0 0 0 0 0
..........................................................................CCCTGCTCCCTTATGTTCTAGTAACAT............................................................... 27 0 8 0.50 4 3 0 1 0 0 0
.........................................GGAACCCACCATCCTTTGTTCCAGACAC............................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
................................CAGGTCCTCGGAACCCACCATCCGT........................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0
........................................................................................................................GGGCCTGGACGTATGAACGC........................ 20 0 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................GGCCTGGACGTATGAACGCTCTTTCG................. 26 0 2 0.50 1 1 0 0 0 0 0
............................................................................................TAGTAACATAGGTTTTTACTTCCAT............................................... 25 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................AGGTTTTTACTTCCATTCTGGGCCT...................................... 25 0 2 0.50 1 1 0 0 0 0 0
..............................................................CAGACACCTAACCCCTGCTCCCT............................................................................... 23 0 9 0.44 4 4 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCCCGT.............................................................................. 25 1 9 0.44 4 0 4 0 0 0 0
...................................................................ACCTAACCCCTGCTCCCTTATGTT......................................................................... 24 0 10 0.40 4 1 1 0 0 0 2
.....................................................................CTAACCCCTGCTCCCTTATGTTCTAGT.................................................................... 27 0 8 0.38 3 2 1 0 0 0 0
............................................................................CTGCTCCCTTATGTTCTAGTAACAT............................................................... 25 0 8 0.38 3 2 0 0 0 1 0
..........................................................................CCCTGCTCCCTTATGTTCTAGT.................................................................... 22 0 8 0.38 3 3 0 0 0 0 0
..............................................CCACCATCCTTTGTTCCAGACAC............................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCCCTTA............................................................................. 26 0 9 0.33 3 3 0 0 0 0 0
...............................................................AGACACCTAACCCCTGCTCCCTTAT............................................................................ 25 0 9 0.33 3 2 0 0 1 0 0
.......................................................................AACCCCTGCTCCCTTATGTTCT....................................................................... 22 0 9 0.33 3 3 0 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCCCGT.............................................................................. 26 1 9 0.33 3 0 3 0 0 0 0
.............................................................CCAGACACCTAACGCCTGCTCCCT............................................................................... 24 1 9 0.33 3 2 1 0 0 0 0
..............................................................CAGACACCTAACCCCTGCTCCCTTATG........................................................................... 27 0 9 0.33 3 3 0 0 0 0 0
.....................................................................CTAACCCCTGCTCCCTTATGT.......................................................................... 21 0 10 0.30 3 3 0 0 0 0 0
........................................................................ACCCCTGCTCCCTTATGTTCTAGT.................................................................... 24 0 8 0.25 2 2 0 0 0 0 0
.......................................................................................................................................AGCGCTCGTTCGTGGGTT........... 18 2 4 0.25 1 1 0 0 0 0 0
......................................CTCGGAACCCACCATCCTTT.......................................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCCCTTGT............................................................................ 27 1 9 0.22 2 0 2 0 0 0 0
...............................................................AGACACCTAACCCCTGCTCCCTTA............................................................................. 24 0 9 0.22 2 2 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCTCTT.............................................................................. 25 1 9 0.22 2 0 2 0 0 0 0
..................................................................CACCTAACCCCTGCTCCCTTATGTT......................................................................... 25 0 9 0.22 2 1 1 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCTATTAT............................................................................ 28 2 9 0.22 2 0 0 0 2 0 0
...........................................................TTCCAGACACCTAACCCCTGCTCCC................................................................................ 25 0 9 0.22 2 2 0 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCCCTTA............................................................................. 27 0 9 0.22 2 2 0 0 0 0 0
............................................................CCCAGACACCTAACCCCTGCTCCCGT.............................................................................. 26 2 9 0.22 2 0 2 0 0 0 0
..............................................................CAGACACCTAACCCCTGCTCCCTTATGTT......................................................................... 29 0 9 0.22 2 2 0 0 0 0 0
............................................................ACCAGACACCTAACCCCTGCTCCCTTAT............................................................................ 28 1 9 0.22 2 2 0 0 0 0 0
.............................................................CCAGACACTTAACCCCTGCTCCCTT.............................................................................. 25 1 9 0.22 2 0 0 0 2 0 0
.............................................................ACAGACACCTAACCCCTGCTCCCTTAT............................................................................ 27 1 9 0.22 2 2 0 0 0 0 0
..................................................................CACCTAACCCCTGCTCCCTT.............................................................................. 20 0 9 0.22 2 2 0 0 0 0 0
..............................................................CAGACACCTAACCCCTGCTCCCTTGT............................................................................ 26 1 9 0.22 2 0 2 0 0 0 0
................................................................GACACCTAACCCCTGCTCCCTTATG........................................................................... 25 0 9 0.22 2 2 0 0 0 0 0
.........................................................AACTCCAGACACCTAACCCCTGCTCCCTTAT............................................................................ 31 3 9 0.22 2 0 0 0 2 0 0
............................................................TCCAGACACCTAACCCCTGCTCCCTTC............................................................................. 27 1 9 0.22 2 2 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCCC................................................................................ 23 0 9 0.22 2 2 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTTCCTT.............................................................................. 25 1 14 0.21 3 1 1 0 0 0 1
.....................................................................CTAACCCCTGCTCCCTTAT............................................................................ 19 0 10 0.20 2 2 0 0 0 0 0
.....................................................................CTAACCCCTGCTCCCTTATGTT......................................................................... 22 0 10 0.20 2 2 0 0 0 0 0
..................................GGTCCTCGGAACCCACCATCCT............................................................................................................ 22 0 17 0.18 3 3 0 0 0 0 0
.............................................................................................................................TGGACGTATGAACGCTCTTTCGT................ 23 0 7 0.14 1 1 0 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTTCCTT.............................................................................. 26 1 14 0.14 2 2 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTTCCT............................................................................... 24 1 15 0.13 2 2 0 0 0 0 0
.....................................................................CTAACCCCTGCTTCCTTATGTTCT....................................................................... 24 1 15 0.13 2 2 0 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTTCCT............................................................................... 25 1 15 0.13 2 2 0 0 0 0 0
......................................................................TAACCCCTGCTCCCTTATGTTCTAGT.................................................................... 26 0 8 0.13 1 0 0 0 1 0 0
..........................................................GTTCCAGACACCTAACCCCTGCTCCCTT.............................................................................. 28 0 8 0.13 1 1 0 0 0 0 0
.....................................................................CTAACCCTTGCTCCCTTATGTTCTAGT.................................................................... 27 1 8 0.13 1 0 1 0 0 0 0
.........................................................AGTTCCAGACACCTAACCCCTGCTCCCTT.............................................................................. 29 1 8 0.13 1 1 0 0 0 0 0
........................................................................ACCCCTGCTCCCTTATGTTCTAG..................................................................... 23 0 8 0.13 1 1 0 0 0 0 0
...........................................................................CCTGCTCCCTTATGTTCTAGTAACA................................................................ 25 0 8 0.13 1 1 0 0 0 0 0
...........................................................................CCTGCTCCCTTATGTTCTAGT.................................................................... 21 0 8 0.13 1 1 0 0 0 0 0
....................................................................CCTAACCCCTGCTCCCTTATGTTCTAGT.................................................................... 28 0 8 0.13 1 0 1 0 0 0 0
.......................................................................AACCCCTGCTCCCTTATGTTCTAGT.................................................................... 25 0 8 0.13 1 1 0 0 0 0 0
................................................................................TCCCTTATGTTCTAGTAA.................................................................. 18 0 8 0.13 1 1 0 0 0 0 0
.............................................................................TGCTCCCTTATGTTCTAGTAACAT............................................................... 24 0 8 0.13 1 1 0 0 0 0 0
.................................AGGTCCTCGGAACCCACCAT............................................................................................................... 20 0 16 0.13 2 2 0 0 0 0 0
................................AAGGTCCTCGGAACCCACCATCCT............................................................................................................ 24 1 16 0.13 2 2 0 0 0 0 0
..................................GGTCCTCGGAACCCACCATCC............................................................................................................. 21 0 17 0.12 2 2 0 0 0 0 0
......................................................................TAACCCCTGCTCCCTTATGTTCT....................................................................... 23 0 9 0.11 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGGTCCCTTAT............................................................................ 27 1 9 0.11 1 0 1 0 0 0 0
..................................................................CACCTAACCCCTGCTCCCTTAT............................................................................ 22 0 9 0.11 1 1 0 0 0 0 0
...........................................................TTCCAGACACCTAACCCCTGCTCCCTT.............................................................................. 27 0 9 0.11 1 1 0 0 0 0 0
..............................................................CAGACACCTAACCCCTGCTCCCGT.............................................................................. 24 1 9 0.11 1 0 1 0 0 0 0
........................................................................ACCCCTGCTCCCTTATGTTC........................................................................ 20 0 9 0.11 1 1 0 0 0 0 0
...................................................................ACCTAACCCCTGCTCCCTTATGTTC........................................................................ 25 0 9 0.11 1 1 0 0 0 0 0
..............................................................CAGACACCTAACCCCTGCTCCATT.............................................................................. 24 1 9 0.11 1 0 1 0 0 0 0
............................................................ACCAGACACCTAACCCCTGCTCCCTT.............................................................................. 26 1 9 0.11 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCTCGT.............................................................................. 25 2 9 0.11 1 0 1 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTC.................................................................................. 22 0 9 0.11 1 1 0 0 0 0 0
.................................................................ACACCTAACCCCTGCTCCCTTAT............................................................................ 23 0 9 0.11 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCCCTTATG........................................................................... 28 0 9 0.11 1 1 0 0 0 0 0
................................................................AACACCTAACCCCTGCTCCCTT.............................................................................. 22 1 9 0.11 1 1 0 0 0 0 0
.............................................................CCGTACACCTACCCCCTGCTCCCTT.............................................................................. 25 3 9 0.11 1 0 0 1 0 0 0
............................................................TCCAGACACCTAACCCCTGCCCCCT............................................................................... 25 1 9 0.11 1 1 0 0 0 0 0
..................................................................CACCTAACCCCTGCTCCCTTATG........................................................................... 23 0 9 0.11 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGTTCCCTTA............................................................................. 26 1 9 0.11 1 1 0 0 0 0 0
........................................................................ACCCCTGCTCCCTTATGTTCT....................................................................... 21 0 9 0.11 1 1 0 0 0 0 0
................................................................GACACCTAACCCCTGCTCCCTTATTT.......................................................................... 26 1 9 0.11 1 0 1 0 0 0 0
............................................................AACAGACACCTAACCCCTGCTCCC................................................................................ 24 2 9 0.11 1 0 0 1 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCCATT.............................................................................. 26 1 9 0.11 1 0 1 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCTCGT.............................................................................. 26 2 9 0.11 1 0 1 0 0 0 0
.............................................................CCAGACGCCTAACCCCTGCTCCCTTAT............................................................................ 27 1 9 0.11 1 1 0 0 0 0 0
...............................................................AGACACCTAACCCCTGCTCCCTTATGTC......................................................................... 28 1 9 0.11 1 1 0 0 0 0 0
...........................................................TTCCAGACACCTAACCCCTGCTCC................................................................................. 24 0 9 0.11 1 1 0 0 0 0 0
......................................................................TAACCCCTGCTCCCTTATGTTCTA...................................................................... 24 0 9 0.11 1 1 0 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCCCTC.............................................................................. 26 1 9 0.11 1 1 0 0 0 0 0
..............................................................CAGACACCTAACCCCTGCTCCC................................................................................ 22 0 9 0.11 1 1 0 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCTCTT.............................................................................. 26 1 9 0.11 1 0 1 0 0 0 0
.............................................................CCAGACACCTAATCCCTGCTCTCGT.............................................................................. 25 3 9 0.11 1 0 1 0 0 0 0
...........................................................TTCCAGACACCTAACCCCTGCTCCCT............................................................................... 26 0 9 0.11 1 1 0 0 0 0 0
..............................................................CAGACACCTAACCCCTGCTC.................................................................................. 20 0 9 0.11 1 1 0 0 0 0 0
.....................................................................CTAACCCCTGCTCCCTTATGTTC........................................................................ 23 0 9 0.11 1 1 0 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCCGTT.............................................................................. 26 1 9 0.11 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTC.................................................................................. 21 0 9 0.11 1 0 1 0 0 0 0
.............................................................ACAGACACCTAACCCCTGCTCCCTTATGT.......................................................................... 29 1 9 0.11 1 1 0 0 0 0 0
............................................................CCCAGACACCTAACCCCTGCTCCGT............................................................................... 25 2 9 0.11 1 0 1 0 0 0 0
.............................................................CCAGACACCTAACCCCCGCTCCCTT.............................................................................. 25 1 9 0.11 1 1 0 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTCCCTCAT............................................................................ 28 1 9 0.11 1 0 1 0 0 0 0
...........................................................TTCCAGACACCTAACCCCTGCTCCCTTAT............................................................................ 29 0 9 0.11 1 0 1 0 0 0 0
...............................................................AGACACCTAACCCCTGCTCCCTTATGTT......................................................................... 28 0 9 0.11 1 1 0 0 0 0 0
.................................................................ACACCTAACCCCTGCTCCCTTGT............................................................................ 23 1 9 0.11 1 0 1 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCCGT............................................................................... 24 1 9 0.11 1 0 0 0 0 1 0
................................................................AACACCTAACCCCTGCTCCCTTAT............................................................................ 24 1 9 0.11 1 0 0 0 1 0 0
............................................................TCCAGACACCTAACCCCCGCTCCCTT.............................................................................. 26 1 9 0.11 1 0 1 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCTCTTAT............................................................................ 27 1 9 0.11 1 1 0 0 0 0 0
............................................................TCCAAACACCTAACCCCTGCTCCCTT.............................................................................. 26 1 9 0.11 1 0 1 0 0 0 0
.........................................................................CCCCTGCTCCCTTATGTTCT....................................................................... 20 0 9 0.11 1 1 0 0 0 0 0
...........................................................ATCCAGACACCTAACCCCTGCTCCCTT.............................................................................. 27 1 9 0.11 1 1 0 0 0 0 0
............................................................CCCAGACACCTATCCCCTGCTCCCTTAT............................................................................ 28 2 9 0.11 1 0 1 0 0 0 0
......................................................................TAACCCCTGCTCCCTTATGTTC........................................................................ 22 0 9 0.11 1 1 0 0 0 0 0
................................................................GACACCTAACCCCTGCTCCCT............................................................................... 21 0 9 0.11 1 1 0 0 0 0 0
....................................................................CCTAACCCCTACTCCCTTATGTTCT....................................................................... 25 1 9 0.11 1 1 0 0 0 0 0
...............................................................AGACACCTAACCCCTGCTCCCT............................................................................... 22 0 9 0.11 1 1 0 0 0 0 0
..................................................................CACCTAACCCCTGCTCCCTTA............................................................................. 21 0 9 0.11 1 0 1 0 0 0 0
...........................................................AACCAGACACCTAACCCCTGCTCCCTT.............................................................................. 27 2 9 0.11 1 0 0 0 1 0 0
................................................................GACACCTAACCCCTGCTCCCTT.............................................................................. 22 0 9 0.11 1 1 0 0 0 0 0
..............................................................CAGACACCTAACCCCTGCTCCCTTACGT.......................................................................... 28 1 10 0.10 1 0 1 0 0 0 0
......................................................................TAACCCCTGCTCCCTTATGT.......................................................................... 20 0 10 0.10 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCCCTTAC............................................................................ 27 1 10 0.10 1 1 0 0 0 0 0
...........................................................................................CTAGTAACATAGGCTTTTACTTCCAT............................................... 26 1 10 0.10 1 1 0 0 0 0 0
.......................................................................AACCCCTGCTCCCTTATGTT......................................................................... 20 0 10 0.10 1 1 0 0 0 0 0
..................................................................TACCTAACCCCTGCTCCCTTATGT.......................................................................... 24 1 10 0.10 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTCCCTTTCGT.......................................................................... 29 2 10 0.10 1 0 1 0 0 0 0
....................................................................CCTAACCCCTGCTCCCTTATGTT......................................................................... 23 0 10 0.10 1 1 0 0 0 0 0
.....................................................................CTAACCCCTGCTCCCTTATG........................................................................... 20 0 10 0.10 1 1 0 0 0 0 0
....................................................................CCTAACCCCTGCTCCCCTATGTT......................................................................... 23 1 10 0.10 1 0 1 0 0 0 0
......................................................................TAACCCCTGCTCCCTTATGTT......................................................................... 21 0 10 0.10 1 1 0 0 0 0 0
....................................................................CCTAACCCCTGCTCCCTTATGGT......................................................................... 23 1 10 0.10 1 0 1 0 0 0 0
..........................................................GTTCCAGACACCTAACCCCTGCT................................................................................... 23 0 11 0.09 1 1 0 0 0 0 0
..............................................................AAAACACCTAACCCCTGCTCCCTTATG........................................................................... 27 2 11 0.09 1 1 0 0 0 0 0
..........................................................GTTCCAGACACCTAACCCC....................................................................................... 19 0 11 0.09 1 1 0 0 0 0 0
.............................................................CAAGACACCTAACCCCTGCTCCCT............................................................................... 24 1 11 0.09 1 0 0 1 0 0 0
..............................................................AAGACACCTAACCCCTGCTCCCTTATGT.......................................................................... 28 1 11 0.09 1 1 0 0 0 0 0
..........................................................GTTCCAGACACCTAACCCCTG..................................................................................... 21 0 11 0.09 1 1 0 0 0 0 0
.....................................CCTCGCAACCCACCATCCTT........................................................................................................... 20 1 11 0.09 1 0 1 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCT................................................................................... 20 0 12 0.08 1 1 0 0 0 0 0
...........................................................TTCCAGACACCTAACCCCTG..................................................................................... 20 0 12 0.08 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGC.................................................................................... 19 0 12 0.08 1 1 0 0 0 0 0
............................................................CCCAGACACCTAACCCCTGCTTCCTTGT............................................................................ 28 3 13 0.08 1 0 1 0 0 0 0
............................................................TCCAGACACCTAACCCCTGCTTCCTTAT............................................................................ 28 1 13 0.08 1 1 0 0 0 0 0
.............................................................CCAGACACCTAACCCCTGCTTCCTTATG........................................................................... 28 1 13 0.08 1 1 0 0 0 0 0
...............................................................AGACACCTAACCCCTGCTTCCTTATG........................................................................... 26 1 15 0.07 1 1 0 0 0 0 0
................................................................GACACCTAACCCCTGCTTCCTTATGT.......................................................................... 26 1 15 0.07 1 0 0 0 0 0 1
.................................AGGTCCTCGGAACCCACCATCC............................................................................................................. 22 0 16 0.06 1 1 0 0 0 0 0
.................................AAGTCCTCGGAACCCACCATA.............................................................................................................. 21 2 16 0.06 1 0 0 0 1 0 0
.................................AGGTCCTCGGAACCCACCGTCC............................................................................................................. 22 1 16 0.06 1 1 0 0 0 0 0
................................AAGGTCCTCGGAACCCACCATCC............................................................................................................. 23 1 16 0.06 1 1 0 0 0 0 0
...................................GTCCTCGGAACCCACCAT............................................................................................................... 18 0 17 0.06 1 1 0 0 0 0 0
.....................................................................CTAACCCCTGCTTCCTTATGTT......................................................................... 22 1 17 0.06 1 1 0 0 0 0 0
.....................................CCTCGGAACCCACCATCCT............................................................................................................ 19 0 18 0.06 1 0 1 0 0 0 0
.......................................................................................................................................AGCGGTCTTTCGTGGGTT........... 18 2 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................CGCTCGTTCGTGGGTTCC......... 18 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group3a:1388795-1388958 + dps_2847 CCGCTTGGACGCGAGCGGAGCAGAC--A-----GGCCTAGTCCAGGAGCCTTGGGTGGTAGGAAACAAGGT---CTGTGGATTGGGGACGAGGGAATACAAGATCATTGTATCCAAAAATGAAGGTAAGACCCGGACCTGCATACTTGCGAGAAAGCACCCAAATATCTTTCTG
droPer2 scaffold_52:542903-543066 - CCGCTTGGACGCGAGCGGAGCAGAC--A-----GTCCTAGTCCAGGAGCCTTGGGTGGTAGGAAACAAGGT---CTGTGGATTGGGGACGAAGGAATACAAGTTCATTGTATCCAAAAATGAAGGTAAGACCCGGACCTGCATACTTGCGAGAAAGCACCCAAATATCTTGCTG
droGri2 scaffold_14857:34504-34669 - CCGCCTGGCCGGAGGCGGAGACGACATA-----GTACTAGTCCAAGAACCTTGGGTGATTGGAGGAAAGGT---TTGTGGACTAGGAAACAAAAATTACAAGCTCTTAGTAGCTGGAAATGAAGGTAAAAAACGTACCTGCATCCTCGCGAAAAAACATCTAAATATTTTTCTG
droAna3 scaffold_13082:2355988-2356158 - CCATCTGGCTGAGGATGGAGCCGATATAGTCCAGTCCTAGTCCAGGAACCATGGATAGCAGGAGGTAGGGT---TTCTGGACTAGCGACCAATGAGTACAAGCTACTAGTAGCCAATACTGAAGGTAAAATTACAGCCTGCATTTTAGCTAAAAAGCACCTTAGCATATTTTTG
droBip1 scf7180000393587:56120-56285 - CCACCTCGCCGAGAGTGGAGCAGATGTG-----GCCCTCATCCAGGAACCCTGGATCCTAGGAGACAGGAT---TCTTGGGCTGGGGGCGTCGGAGTTCAGGCTCTGTAAAGCCAACACTACAGGTAAAAGGCGAGCCTGCATGCTCGCAAAAAAGAACCTTAACCTCTTTTTG
droKik1 scf7180000301847:11923-12091 + AGCCATGGAGCAGGGATCCGCCGACATA-----GCTTTGGTCTAGGAGCCATGGACCGCCTCAGGCAATGCCATCGCCGGATTGAAGTTCGCAAATTACAATTTGCTCCATCCACCAACGGTAAGCAGGCATAGAACCACCGTACTTGTACGGAAGGGTCTACACGCTAACCTT
droEle1 scf7180000491131:14961-15126 - TCGCTTGGCTGCCAGCGGAGCAGACATA-----GTCCTGGTCCAGGAACCTTGGGAGGTAGGAGCCAAGAT---TTCTGGATTAGGCACTACGGAATACAAGTTATTACTTGGCACAAAAGGTGGTAAAATTCGTACCTGCATTTTAGCCAAAACGCACCTTAGCATTTTTCTG
droRho1 scf7180000771993:5705-5870 + TCGCCTGGCCAAAGGCGAAGCCGACGTG-----GTCTTAGTTCAGGAACCCTGGGTGGCAGGAGGCAGGGT---TTCTGGACTGGGAACAAAAGACTACAAGCTTATGCTTGACCCCAAACAAGGTAAAATTCGAACCTGCATTTTAGCCAAACGGCATCTTAGTACATTTCTG
droBia1 scf7180000297633:8938-9076 - TCGCCTGACCAAAGGCGGAGCCGACCTG-----GTCCTAGTACAGGAACCTTGGGCAGTAGGAGGCAAGGT---TGCTGGATTGGAAACAAAAGAATACAAGCT---------------------------TCGAAACTGCATTTTAGCCAAAAGGCATCTTAGTATATTTCTG
droTak1 scf7180000410974:2053-2218 - TCGCCTGGCCAAGGGCGAAGCCGACGTG-----GTCCTAGTACAGGAACCTTGGGTAGTAGGAGGCAAGGT---TGCTGGACTAGGAACGAGAGAGTATAAGCTAATGCTTGACCCCAAAGAAGGTAAAATTCGAACCTGCATTTTGGCCAAAAGGCACCTAAATATATTTCTG
droYak3 chr2h:365450-365614 - CCATCTGGCTGAAGATGGAGTCGACATA-----GTCCTAATCCAGGAACCTTGGATAGTGGGAGGAAAGGT---TTCAGGATTAGGGACTAAGGAATATAAGCTTCTAACAGCTCCCAACGAAGGTAAAATAAGAGCCTGCATTCTAGCCAA-AAGCACCTTAGCATTTTTCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCGCTTGGACGCGAGCGGAGCAGAC--A-----GGCCTAGTCCAGGAGCCTTGGGTGGTAGGAAACAAGGT---CTGTGGATTGGGGACGAGGGAATACAAGATCATTGTATCCAAAAATGAAGGTAAGACCCGGACCTGCATACTTGCGAGAAAGCACCCAAATATCTTTCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................AAGGT---CTGTGGATTGGGGACGA...................................................................................221211.581390112000002340
..................................................................AAGGT---CTGTGGATTGGGGACGAG..................................................................................2399.2283051000032900
..................................................................AAGGT---CTGTGGATTGGGGACG....................................................................................21125.336405500001710
..................................................................AAGGT---CTGTGGATTGGGGACGAGG.................................................................................2494.564103000001910
................................................................ACAAGGT---CTGTGGATTGGGGT......................................................................................2113.0030000000030
..............................................................AAACAAGGT---CTGTGGATTGGGG.......................................................................................2213.0030000000300
............................................................GGAAACAAGGT---CTGTGGATTG..........................................................................................2113.0030000000300
.....................................................................................................................AATGAAGGTAAGACCCGGACCT...................................2222.5050400001000
.....................................................................................................................AATGAAGGTAAGACCCGGACCTG..................................2322.5050210000200
.....................................................................................................................AATGAAGGTAAGACCCGGAC.....................................2022.0040400000000
.....TGGACGCGAGCGGAGCAGAC--...................................................................................................................................................2012.0020000000200
....TTGGACGCGAGCGGAGCAGT......................................................................................................................................................2012.0020000000020
..................................................................AAGGT---CTGTGGATTGGGGAC.....................................................................................20121.832201020102700
..................................................................AAGGT---CTGTGGATTGGGGA......................................................................................19121.832201910000200
.....................................................................................................................AATGAAGGTAAGACCCGGACCTGC.................................2421.5030200100000
.....................................................................................................................AATGAAGGTAAGACCCGGACC....................................2121.5030300000000
..................................................................AAGGT---CTGTGGATTGGGG.......................................................................................18121.421701300002200
.............................................................................................................................TAAGACCCGGACCTGCATACTTGCGA.......................2621.0020100000100
...............................................................AACAAGGT---CTGTGGATTGGGG.......................................................................................2111.0010100000000
...........CGAGCGGAGCAGAC--A-----GGCC.........................................................................................................................................1911.0010000000010
...................................................................AGGT---CTGTGGATTGGGGACGA...................................................................................21121.001201200000000
................................................................ACAAGGT---CTGTGGATTGGGGACA....................................................................................2311.0010000000100
....TTGGACGCGAGCGGAGCAGAC--A-----GG...........................................................................................................................................2411.0010000000100
..................................................................................................................................................TGCGAGAAAGCACCCAAATATCTTTC..2611.0010100000000
..................................................TTGGGTGGTAGGAAACAAGGT---C...................................................................................................2231.0030000000300
.......................................................TGGTAGGAAACAAGGT---CTGT................................................................................................2031.0030000000300
................................................................ACAAGGT---CTGTGGATTGGGG.......................................................................................2011.0010000000010
...CTTGGACGCGAGCGGAGCAGT......................................................................................................................................................2111.0010000000010
.............................................................GAAACAAGGT---CTGTGGATTG..........................................................................................2011.0010100000000
..................................................................AAGGT---CTGTGGATTGGGGACGAGGG................................................................................2590.8980400000400
...................................................................AGGT---CTGTGGATTGGGGACGAG..................................................................................2290.6760600000000
........................................................GGTAGGAAACAAGGT---CTGTGG..............................................................................................2130.6720000000200
..................................................................AAGGT---CTGTGGATTGGGGACGAA..................................................................................23150.5380500000300
.....................................................................................................................AATGAAGGTAAGACCCGGACCTGCATC..............................2720.5010100000000
..................................................TTGGGTGGTAGGAAACAAGGT---....................................................................................................2140.5020200000000
............................................................................................................................GTAAGACCCGGACCTGCATAC.............................2120.5010000000100
.....................................TAGTCCAGGAGCCTTGGGTGG....................................................................................................................2120.5010100000000
.....................................................................................................................AATGAAGGTAAGACCCGGACCTGCA................................2520.5010100000000
....................................................................................................................AAATGAAGGTAAGACCCGGA......................................2020.5010100000000
.....................................................................................................................AATGAAGGTAAGACCCGGA......................................1920.5010100000000
...................................CCTAGTCCAGGAGCCTTGGGT......................................................................................................................2120.5010100000000
..................................................................AAGGT---CTGTGGATTGGGGACGAGT.................................................................................2490.4440200000200
..................................................................AAGGT---CTGTGGATTGGGGACGAGGGA...............................................................................2690.4440300000100
...................................................................AGGT---CTGTGGATTGGGGACG....................................................................................20120.4250500000000
...........................................................AGGAAACAAGGT---CTGTGGATT...........................................................................................2130.3310100000000
.....................................................GGTGGTAGGAAACAAGGT---CTGTGG..............................................................................................2430.3310100000000
.................................................................CAAGGT---CTGTGGATTGGGGACGA...................................................................................23110.2730000000300
..................................................................AAGGT---CTGTGGATTGGGA.......................................................................................18120.2530200001000
.........................................................GTAGGAAACAAGGT---CTGTGGA.............................................................................................2140.2510100000000
..................................................................AAGGT---CTGTGGATTGGG........................................................................................17120.2530000000210
..................................................................AAGGT---CTGTGGATTGGGGACGAC..................................................................................23120.2530000000300
......................................................................T---CTGTGGATTGGGGACGAGGG................................................................................2190.2220000001010
..................................................................AAGGT---CTGTGGATTGGGGACGAGA.................................................................................2490.2220200000000
.............................................................................TGGATTGGGGACGAGG.................................................................................16110.1820000000020
.................................................................CAAGGT---CTGTGGATTGGGGA......................................................................................20110.1820100001000
.................................................................CAAGGT---CTGTGGATTGGGGACG....................................................................................22110.1820200000000
....................................................................GGT---CTGTGGATTGGGGACGA...................................................................................20120.1720200000000
..................................................................AAGGT---CTGTGGATTGGGGACGT...................................................................................22120.1720100000100
..........................................................................................AGGGAATACAAGATCATTGTATC.............................................................2370.1410100000000
......................................................................................GACGAGGGAATACAAGATCATTGTATC.............................................................2770.1410100000000
..........................................................................CTGTGGATTGGGGACG....................................................................................16140.1420000000020
..........................................................................................AGGGAATACAAGATCATTGTATCC............................................................2470.1410100000000
...........................................................................TGTGGATTGGGGACGA...................................................................................16140.1420000000200
..................................................................................TGGGGACGAGGGAATACAAGATCATTAA................................................................2880.1310100000000
...........................................................................................GGGAATACAAGATCATTG.................................................................1880.1310100000000
......................................................................................GACGAGGGAATACAAGATCATTG.................................................................2380.1310100000000
........................................TCCAGGAGCCTTGGGTGGTAG.................................................................................................................21160.1320000000200
.........................................................................................GAGGGAATACAAGATCATTGTA...............................................................2280.1310100000000
..........................................................................................AGGGAATACAAGATCATTG.................................................................1980.1310100000000
...........................................................................................GGGAATACAAGATCATTA.................................................................1880.1310000000100
...........................................................................TGTGGATTGGGGACGAGGGAA..............................................................................2190.1110000000010
..........................................................................CTGTGGATTGGGGACGAGGGAATAC...........................................................................2590.1110100000000
......................................................................T---CTGTGGATTGGGGACGAGGGAA..............................................................................2390.1110000000100
............................................................................GTGGATTGGGGACGAGGGAATAC...........................................................................2390.1110000000100
...................................................................AGGT---CTGTGGATTGGGGACGAGGGAA..............................................................................2690.1110100000000
......................................................................T---CTGTGGATTGGGGACGAGGGAAT.............................................................................2490.1110100000000
............................................................................GTGGATTGGGGACGAGG.................................................................................1790.1110000000100
...................................................................AGGT---CTGTGGATTGGGGACGAGG.................................................................................2390.1110100000000
.............................................................................TGGATTGGGGACGAGGGAATACAA.........................................................................24100.1010000000100
.................................................................CAAGGT---CTGTGGATTGGGGAC.....................................................................................21110.0910100000000
..................................................................AAGGT---CTGTGGATTGGGGAA.....................................................................................20120.0810100000000
.....................................................................GT---CTGTGGATTGGGGACG....................................................................................18120.0810000000100
..................................................................AAGGT---CTGTGGATTGGGGACGG...................................................................................22120.0810000000100
..................................................................AAGGT---CTGTGGATTGGGGT......................................................................................19120.0810000100000
...................................................................AGGT---CTGTGGATTGGGGA......................................................................................18120.0810100000000
..........................................................................CTGTGGATTGGGGACGA...................................................................................17140.0710000000010
............................................................................GTGGATTGGGGACGAGTT................................................................................18150.0710100000000
........................................TCCAGGAGCCTTGGGTGGTAGG................................................................................................................22160.0610100000000
........................................TCCAGGAGCCTTGGGTGGTAGA................................................................................................................22160.0610100000000
..........................................CAGGAGCCTTGGGTGGTAGG................................................................................................................20170.0610100000000
..................................................................AAGGT---CTGTGGATTGGTA.......................................................................................18190.0510100000000
droPer2
CCGCTTGGACGCGAGCGGAGCAGAC--A-----GTCCTAGTCCAGGAGCCTTGGGTGGTAGGAAACAAGGT---CTGTGGATTGGGGACGAAGGAATACAAGTTCATTGTATCCAAAAATGAAGGTAAGACCCGGACCTGCATACTTGCGAGAAAGCACCCAAATATCTTGCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................AAGGT---CTGTGGATTGGGGACGAAG.................................................................................2411.001010000
.......................AC--A-----GTCCTAGTCCAGGAGCCTTGGG.......................................................................................................................2511.001010000
..................................................................AAGGT---CTGTGGATTGGGGACGA...................................................................................22200.408080000
..................................................................AAGGT---CTGTGGATTGGGGAC.....................................................................................20200.204031000
...................................................................AGGT---CTGTGGATTGGGGACG....................................................................................20200.102020000
..........................................................................................................................................TGCATACTTGCGAGAAAGC.................19120.081010000
..................................................................AAGGT---CTGTGGATTGGGG.......................................................................................18200.051000001
droGri2
CCGCCTGGCCGGAGGCGGAGACGACATA-----GTACTAGTCCAAGAACCTTGGGTGATTGGAGGAAAGGT---TTGTGGACTAGGAAACAAAAATTACAAGCTCTTAGTAGCTGGAAATGAAGGTAAAAAACGTACCTGCATCCTCGCGAAAAAACATCTAAATATTTTTCTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CCATCTGGCTGAGGATGGAGCCGATATAGTCCAGTCCTAGTCCAGGAACCATGGATAGCAGGAGGTAGGGT---TTCTGGACTAGCGACCAATGAGTACAAGCTACTAGTAGCCAATACTGAAGGTAAAATTACAGCCTGCATTTTAGCTAAAAAGCACCTTAGCATATTTTTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CCACCTCGCCGAGAGTGGAGCAGATGTG-----GCCCTCATCCAGGAACCCTGGATCCTAGGAGACAGGAT---TCTTGGGCTGGGGGCGTCGGAGTTCAGGCTCTGTAAAGCCAACACTACAGGTAAAAGGCGAGCCTGCATGCTCGCAAAAAAGAACCTTAACCTCTTTTTGSizeHit CountTotal NormTotal
No Reads
droKik1
AGCCATGGAGCAGGGATCCGCCGACATA-----GCTTTGGTCTAGGAGCCATGGACCGCCTCAGGCAATGCCATCGCCGGATTGAAGTTCGCAAATTACAATTTGCTCCATCCACCAACGGTAAGCAGGCATAGAACCACCGTACTTGTACGGAAGGGTCTACACGCTAACCTTSizeHit CountTotal NormTotal
No Reads
droEle1
TCGCTTGGCTGCCAGCGGAGCAGACATA-----GTCCTGGTCCAGGAACCTTGGGAGGTAGGAGCCAAGAT---TTCTGGATTAGGCACTACGGAATACAAGTTATTACTTGGCACAAAAGGTGGTAAAATTCGTACCTGCATTTTAGCCAAAACGCACCTTAGCATTTTTCTGSizeHit CountTotal NormTotal
No Reads
droRho1
TCGCCTGGCCAAAGGCGAAGCCGACGTG-----GTCTTAGTTCAGGAACCCTGGGTGGCAGGAGGCAGGGT---TTCTGGACTGGGAACAAAAGACTACAAGCTTATGCTTGACCCCAAACAAGGTAAAATTCGAACCTGCATTTTAGCCAAACGGCATCTTAGTACATTTCTGSizeHit CountTotal NormTotal
No Reads
droBia1
TCGCCTGACCAAAGGCGGAGCCGACCTG-----GTCCTAGTACAGGAACCTTGGGCAGTAGGAGGCAAGGT---TGCTGGATTGGAAACAAAAGAATACAAGCT---------------------------TCGAAACTGCATTTTAGCCAAAAGGCATCTTAGTATATTTCTGSizeHit CountTotal NormTotal
No Reads
droTak1
TCGCCTGGCCAAGGGCGAAGCCGACGTG-----GTCCTAGTACAGGAACCTTGGGTAGTAGGAGGCAAGGT---TGCTGGACTAGGAACGAGAGAGTATAAGCTAATGCTTGACCCCAAAGAAGGTAAAATTCGAACCTGCATTTTGGCCAAAAGGCACCTAAATATATTTCTGSizeHit CountTotal NormTotal
No Reads
droYak3
CCATCTGGCTGAAGATGGAGTCGACATA-----GTCCTAATCCAGGAACCTTGGATAGTGGGAGGAAAGGT---TTCAGGATTAGGGACTAAGGAATATAAGCTTCTAACAGCTCCCAACGAAGGTAAAATAAGAGCCTGCATTCTAGCCAA-AAGCACCTTAGCATTTTTCTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................CATA-----GTCCTAATCCAGGAACCTTGGA.......................................................................................................................2692.6724060000000018
..................AGTCGACATA-----GTCCTAATCCAGGAACC............................................................................................................................2780.50404000000000
........................CATA-----GTCCTAATCCAGGAACCTTG.........................................................................................................................24130.31404000000000
..................AGTCGACATA-----GTCCTAATCCAGGA...............................................................................................................................2480.25202000000000
.....................................TAATCCAGGAACCTTGGATAGTGGGAG..............................................................................................................2760.17101000000000
........................CATA-----GTCCTAATCCAGGAACCTT..........................................................................................................................23130.15202000000000
....................TCGACATA-----GTCCTAATCCAGGAACCTTG.........................................................................................................................2870.14101000000000
..................AGTCGACATA-----GTCCTAATCCAGGAAC.............................................................................................................................2680.13101000000000
................GGAGTCGACATA-----GTCCTAATCCAGG................................................................................................................................2580.13101000000000
...................GTCGACATA-----GTCCTAATCCAGGA...............................................................................................................................2380.13101000000000
.................GAGTCGACATA-----GTCCTAATCCAGGAAC.............................................................................................................................2780.13101000000000
........................CATA-----GTCCTAATCCAGGAACCTTGG........................................................................................................................2590.11101000000000
........................CATA-----GTCCTAATCCAGGAACCTTGGAA......................................................................................................................2790.11101000000000
........................CATA-----GTCCTAATCCAGGAACCTTGGC.......................................................................................................................2690.11100000000001
........................................TCCAGGAACCTTGGATAGTGGGAGGA............................................................................................................26200.10202000000000
.....................CGACATA-----GTCCTAATCCAGGA...............................................................................................................................21110.09101000000000
........................CATA-----GTCCTAATCCAGGAACC............................................................................................................................21140.07101000000000
........................................................AGTGGGAGGAAAGGT---TTCAGGA.............................................................................................22200.05101000000000
...................................................................AGGT---TTCAGGATTAGGGA......................................................................................18200.05101000000000
........................................................................................CTAAGGAATATAAGCTTCTAACAGCTCC..........................................................28200.05101000000000
.................................................................AAAGGT---TTCAGGATTAGGGAC.....................................................................................21200.05100000010000
.........................................CCAGGAACCTTGGATAGTGGGAGGA............................................................................................................25200.05101000000000
........................................................................................CTAAGGAATATAAGCTTCTAACAGC.............................................................25200.05100000010000
...................................................TGGATAGTGGGAGGAAAGGT---TTCAG...............................................................................................25200.05101000000000

Generated: 05/18/2015 at 05:36 AM