ID:

dps_2846

 Coordinate:

XL_group3a:1387859-1388009 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.4 -22.0 -21.8 -21.6

Flybase annnotation

CDS [Dpse\GA22373-cds]; exon [dpse_GLEANR_10335:2]; intron [Dpse\GA22373-in]

Repeatable elements

NameClassFamilyStrand
Hopers2DNAhAT-hobo+
BilboLINELOA+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTGGTTCAGGTTTTGCACTCTAAAGGATATAGTCATCATCCTCTACCACTCTGCGCTTTCTGTTTTCTCGTATCTTTTAAATTGCTCTTATCTTCGCTTTTTGTGGGGGTGGAAGTGGGCTGGGCGAAGTCTTGAAATATTTTTGTAACAGTGACATATCACAGAAGTCCGGATATTAAATGTAAAGGAATACCTGTAAGGTGAAAGGTGTCTATGCGAACCCGAGGGGGTCCCATAACGAATCCGGAGT
******************************************************************......((..(((((........(((((..((.((((((((..(((.......((((.((((((...........))))))..))))..))).))))))))))..)))))))))).))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
 GSM343916
embryo
 V112
male body		 M062
head
 M022
male body		 GSM444067
head
TCTGGTTCAGGTTTTGCACTC...................................................................................................................................................................................................................................... 21 0 1 4.00 4 3 0 0 0 0 0 1 0 0
...............................................................................................................................................................TCACAGAAGTCCGGATATTAAATGT................................................................... 25 0 1 3.00 3 1 0 1 0 0 1 0 0 0
......TCAGGTTTTGCACTCTAAAGGATA............................................................................................................................................................................................................................. 24 0 1 3.00 3 0 3 0 0 0 0 0 0 0
..................................................................TCTCGTATCTTTTAAATTGCTCTTA................................................................................................................................................................ 25 0 1 3.00 3 0 3 0 0 0 0 0 0 0
..........................................TCTACCACTCTGCGCTTTCTG............................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................................AAGTGGGCTGGGCGAAGTC....................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0
........................................................................................................TGGGGGTGGAACCGGGCTGGG.............................................................................................................................. 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................TCTCGTATCTTTTAAATTGCTCT.................................................................................................................................................................. 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................................TCTCGTATCTTTTAAATTGCTCTTATCT............................................................................................................................................................. 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GTCCGGATATTAAATGTAAA................................................................ 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................TCCGGATATTAAATGTAAAGGAATAC......................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................................TCTCGTATCTTTTAAATTGCTCTTATC.............................................................................................................................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAAGGTGAAAGGTGTCTATGCGAACC............................ 26 0 1 2.00 2 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................CAGAAGTCCGGATATTAAATG.................................................................... 21 0 2 1.50 3 0 2 1 0 0 0 0 0 0
...............................................................................................................................................................TCACAGAAGTCCGGATATTAAAT..................................................................... 23 0 2 1.50 3 1 2 0 0 0 0 0 0 0
...............................................CACTCTGCGCTTTCTGTTTT........................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTCTATGCGAACCCGAGGGGGTCCC................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GAAAGGTGTCTATGCGAACCCGA......................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGAAAGGTGTCTATGCGAACCCGA......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................GAAGTGGGCTGGGCGAAGTCTTG.................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.CTGGTTCAGGTTTTGCACTC...................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................GTGGAAGTGGGCTGGGCGAAG......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................TTTTTAAATTGCTCTTATCTTCGCTT....................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCTATGCGAACCCGAGGGGG.................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................TTTTCTCGTATTTTTTAAATTGCTCTTA................................................................................................................................................................ 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................TCATACTCTACCACTCTGCGCTT................................................................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................TCATCCTCTACCACTCTGCGCTT................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................TCGCTTTTTGTGGGGGTGGAAG....................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......CAGGTTTTGCACTCTAAAGGAA.............................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................TCGCTTTTTGTGGGGGTGGAAGT...................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................CTGGGCGAAGTCTTGAAATAT.............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTCCCATAACGAATCCGGAGT 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................TGCTCTTATCTTCGCTTTTTGTGGGGG............................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................TCTGCGCTTTCTGTT.......................................................................................................................................................................................... 15 0 2 1.00 2 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................TACCTGTAAGGTGAAAGGTGTCTATG.................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................TTTTTGTGGGGGTGGAAG....................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................TATCACAGAAGTCCGGATATTAAATG.................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............TGCACTCTAAAGGATATAGTCATCC.................................................................................................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................AAGGGGGCTGGCCGAAGTCTGG.................................................................................................................... 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................ATACCTGTAAGGTGAAAGG.......................................... 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TCACAGAAGTCCGGATATTAAATG.................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............TTTGCACTCTAAAGGATATAG.......................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................CACAGAAGTCCGGATATTAAAT..................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................TAAATTGCTCTTCTCTTGGC......................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TGACATATCATAGAAGTCCGGATATT......................................................................... 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0
TCTGGTTCCGGTTTTGCAC........................................................................................................................................................................................................................................ 19 1 5 0.20 1 0 0 0 0 0 0 0 1 0
.................................................................................................................AAGTGGGCTGGGCGAAG......................................................................................................................... 17 0 5 0.20 1 0 1 0 0 0 0 0 0 0
...............................ATTCATCATTCACTACCACTC....................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TGACATATCACAGAAGTCCGGAT............................................................................ 23 0 20 0.15 3 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACATATCACAGAAGTCCGGATAT.......................................................................... 23 0 20 0.15 3 0 3 0 0 0 0 0 0 0
.......................................................................................................GTGGGGGTGGGACAGGGCTGGGC............................................................................................................................. 23 3 8 0.13 1 0 0 0 0 0 1 0 0 0
.......................................................................................................GTAGGGGTGGAAGTGGGTTGC............................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................CAGAAGTCCGGATATTAAATT.................................................................... 21 1 8 0.13 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................AAGTCTTGAAATATTTTTGGAAA..................................................................................................... 23 2 8 0.13 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TTGTGGGGGTGGAAGTGG.................................................................................................................................... 18 0 17 0.12 2 2 0 0 0 0 0 0 0 0
....GTTCAGGTTTTGCACTCTAGA.................................................................................................................................................................................................................................. 21 1 20 0.10 2 2 0 0 0 0 0 0 0 0
........................................................................................................TGGGGGGGGAAGTGGTATGGG.............................................................................................................................. 21 3 20 0.10 2 0 0 0 0 0 0 0 0 2
........................................................................................................................................................TGACATATCACAGAAGTCCGGA............................................................................. 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................TATCACAGAAGTCCGGATAT.......................................................................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0
........................................................................................................................................................TGACATATCACAGAAGTCCGGATA........................................................................... 24 0 20 0.10 2 0 0 0 2 0 0 0 0 0
.............................................................................................................................................................TATCACAGAAGTCCGGATA........................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTTGTAACAGTGACATATCACAG...................................................................................... 24 0 12 0.08 1 0 1 0 0 0 0 0 0 0
.....................................................................................................TTGTGGGGGTGGAAGTGGGC.................................................................................................................................. 20 0 16 0.06 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................TTTGTAACAGTGACATATCACAG...................................................................................... 23 0 17 0.06 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................AGATCACAGAAGTCCGGAT............................................................................ 19 1 20 0.05 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................AATGTAAAGGAATGGGTGTA.................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0
....................................................................................................TTTGTAGGGGTGGAAGTGG.................................................................................................................................... 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TAACAGTGACATATCACAGAAGTCCG............................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................GACATATCACAGAAGTCCGGAT............................................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TAACAGTGACATATCACAGAAGTCC................................................................................ 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.....................................................................................................GTGTGGCGGTGGAAGTGGGC.................................................................................................................................. 20 2 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................ATCACAGAAGTCCGGATA........................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................CATATCACAGAAGTCCGGATA........................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................................................................................................GGGGGTGGAAGTTGGTTGGGG............................................................................................................................. 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................TGTAACAGTGACATATCACAGAAGTC................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGACCAAGTCCAAAACGTGAGATTTCCTATATCAGTAGTAGGAGATGGTGAGACGCGAAAGACAAAAGAGCATAGAAAATTTAACGAGAATAGAAGCGAAAAACACCCCCACCTTCACCCGACCCGCTTCAGAACTTTATAAAAACATTGTCACTGTATAGTGTCTTCAGGCCTATAATTTACATTTCCTTATGGACATTCCACTTTCCACAGATACGCTTGGGCTCCCCCAGGGTATTGCTTAGGCCTCA
*******************************************************************......((..(((((........(((((..((.((((((((..(((.......((((.((((((...........))))))..))))..))).))))))))))..)))))))))).))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 M059
embryo
 SRR902011
testis
 M062
head
..........................................................................................................................CCCGCTTCAGAACTTTATAAAAACAT....................................................................................................... 26 0 1 2.00 2 0 2 0 0 0
.....................................................................................................................................................................................................ATTCCACTTTCCACAGATACG................................. 21 0 1 2.00 2 0 2 0 0 0
.....................................................................................................................................................................TTCAGGCCTATAATTTACATT................................................................. 21 0 1 2.00 2 0 2 0 0 0
.................................................................................................................................................................................................GGACATTCCACTTTCCACAGATACGCTT.............................. 28 0 1 2.00 2 1 0 1 0 0
.................................................GAGACGCGAAAGACAAAAGAGCAT.................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................CTTCAGAACTTTATAAAAACATTGT.................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..........................................AGATGGTGAGACGCGAAAGACAAAAG....................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
............................................................................................GAAGCGAAAAACACCCCCACCTTCACCC................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...............CGTGAGGTTTCCTATGTCAGT....................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
................................................TGAGACGCGAAAGACAAAAGAGCAT.................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0
.................................................................AAGAGCATAGAAAATTTAACG..................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................GCTCCCCCAGGGTATTGCTT........ 20 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................................CCAGGGTATTGCTTAGGCCTC. 21 0 1 1.00 1 1 0 0 0 0
...............................................................................................GCGAAAAACACCCCCACCTTC....................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................GGCCTATAATTTACATTTCCTTAT.......................................................... 24 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................ACATTCCACTTTCCACAGATACGCT............................... 25 0 1 1.00 1 1 0 0 0 0
................................................................................................................................TCAGAACTTTATAAAAACATTGT.................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
................................................................................TTAACGAGAATAGAAGCGAAAAACACCC............................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................CCGCTTCAGAACTTTATAAAAACATTGT.................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................CCCGCTTCAGAACTTTATAAAAACATTGT.................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................CCCGCTTCAGAACTTTATAAA............................................................................................................ 21 0 1 1.00 1 0 0 0 0 1
...................................................................................................................................................................................................ACATTCCACTTTCCACAGATACGCTT.............................. 26 0 1 1.00 1 1 0 0 0 0
...........................................................................................AGAAGCGAAAAACACCCCCACCTT........................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................CGACCCGCTTCAGAACTTTA................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................TTACATTTCCTTATGGACATTCCAC............................................... 25 0 1 1.00 1 1 0 0 0 0
..................................................................................AGAGAGGATAGAAGCGAAAAACA.................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0
......................................................................CATAGAAAATTTAACGAGAAT................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0
..................................................................AGAGCATAAAAAATTTAACGAGAAT................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................TGGCTCCCCCAGTGTATTGC.......... 20 2 1 1.00 1 1 0 0 0 0
............................................................................................................................CGCTTCAGAACTTTATAAAAACATTGT.................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................TAGTGTCTTCAGGCCTATAAT........................................................................ 21 0 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................TGTCTTCAGGCCTATAATTTA..................................................................... 21 0 2 0.50 1 0 1 0 0 0
..........................................................................................................................CCCGCTTCAGAACTTTATAA............................................................................................................. 20 0 2 0.50 1 1 0 0 0 0
....................................................ACGCGAAAGACAAAAGAGCATAAA............................................................................................................................................................................... 24 1 3 0.33 1 1 0 0 0 0
........................................................................................................................................................ACTGTATAGTGTCTTCAGGC............................................................................... 20 0 20 0.30 6 6 0 0 0 0
.............................................................................................................................................AAAACATTGTCACTGTATAGTGTCTTCA.................................................................................. 28 0 12 0.17 2 0 0 0 2 0
.........................................................................................................................................................CTGTATAGTGTCTTCAGGCCT............................................................................. 21 0 20 0.15 3 3 0 0 0 0
........................................................................................................................................................................................................................TGCTTGGGCTCCCCCAGGGT............... 20 1 15 0.13 2 2 0 0 0 0
..........................................AGATGCTGAGACGCGAAAGGC............................................................................................................................................................................................ 21 2 9 0.11 1 0 0 0 1 0
...........................................................................................................................................................GTATAGTGTCTTCAGGCCTA............................................................................ 20 0 20 0.10 2 2 0 0 0 0
........................................................................................................................................................................................................................CGCTTGGGCTCCCCCAGGGT............... 20 0 15 0.07 1 1 0 0 0 0
..............................................................................................................................................AAACATTGTCACTGTATAGTGTCTT.................................................................................... 25 0 15 0.07 1 1 0 0 0 0
..............................................................................................................................................AAACATTGTCACTGTATAGTGTCCTCA.................................................................................. 27 1 17 0.06 1 1 0 0 0 0
..........................................................................................................................................................TGTATAGTGTCTTCAGGCC.............................................................................. 19 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................ATTGTGACTGTATAGTGTCTTCA.................................................................................. 23 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................TGTATAGTGTCTTCAGGCCTA............................................................................ 21 0 20 0.05 1 0 0 0 1 0
..............................................................................................................................................AAACATTGTCACTGTATAGTGTCTTCC.................................................................................. 27 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................ATAGTGTCTTCAGGCCTATA.......................................................................... 20 0 20 0.05 1 0 0 0 1 0
............................................................................................................................................AAAAACCTTGTCACTGTAT............................................................................................ 19 1 20 0.05 1 0 1 0 0 0
.........................................................AAAGACAAAAGAGCATAGAAA............................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group3a:1387809-1388059 + dps_2846 TCTGGTTCAGGTTTTGCACTCTAAAGGATATAGTCATCATCCTCTACCACTCTGCGCTTTCTGTTTTCTCGTATCTTTTAAATTGCTCTTATCTTCGCTTTTTGTGGGGGTGGAAGTGGGCTGGGCGAAGTCTTGAAATATTTTTGTAACAG---------TGACATATCAC--AGAAGTCCGGATATTAAATGTAAAGGAATACCTGTAAGGTGAAAGGTGTCTATGCGAACCCGAGGGGGTCCCATAACGAATCCGGAGT
droPer2 scaffold_52:543898-544145 - TCTGGTTCAGGTTTTGCACTCTAAAAGATATAGTCAT---CCTCTACCACTCTGCGCTTTCTGTTTTCTCGTATCTTTTAAATTGCTCTTATCTTCGCTTTTTGTGGGGGTGGAAGTGGGCTGGGCGAAGTCTTGAAATATTTTTGTAACAG---------TGACATATCAC--AGAAGTCCGGATATTAAATGTAAAGGAATACCTGCAAGGTGGAAGGTGTCTATGCGAACCCGAGGGGGTCCCATAACGAATCCGGAGT
droWil2 scf2_1100000004830:147682-147762 + TTGC-----------------------------------------------------------------------------------------------------GGGGGCGGAAAGGGGCGTGGCAAAAATTTGAAATAAACTTGATCACT---------CTACATATTAC--ACGAGTCTACATACCAAAT---------------------------------------------------------------------
droVir3 scaffold_12963:6961979-6962026 + TTTCTGT---------------------------------------------------------TTTGCAATAACTTTTTTGTTGCTATTGCCATTGCTTGTTG----------------------------------------------------------------------------------------T---------------------------------------------------------------------
droMoj3 scaffold_6496:17166757-17166889 + TCATTTA---------------------------------------------------------TTTTAAATAAATTTTGTTTTGTT---------GCTTATCATATGATTGCGAGTGAGATAGTTGACATGTTGAAATATTTGTGTGACAAATAATAGGCTTAAATATA-TACGCATGTGTGTGTATTAAAAATAAAAG--------------------------------------------------------------
droGri2 scaffold_15203:1685174-1685254 + TTTCTTT---------------------------------------------------------TTT-------------------------CTTCTTTTTTTGTGAGGGAGGGCGTGCGCGGTGTTAAGT------ATATTTATGGAGCAG---------ACGTATAG-AC--AGACGT------------C---------------------------------------------------------------------
droAna3 scaffold_13339:840274-840319 + TTCTTG---------------------------------------------------------TTTTTTCTTATCTTTTCAGTTTTAGTTACCTTTATTTTT------------------------------------------------------------------------------------------T---------------------------------------------------------------------
droBip1 scf7180000391501:30811-30864 + TTGGGCTTTGTTTTTGATATCATAACCATATACTCATGATTCGCCACCAATCT-------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------
droKik1 scf7180000302258:87975-88038 + GCTTTTC-----------------------------------------------------CTATTTTTTCGCTGCTTTTAATTTGTTCCCTCTTTTTTTTTTTTTTGATGTGCATG----------------------------------------------------------------------------T---------------------------------------------------------------------
droFic1 scf7180000454045:255691-255746 - CTTCTTT--------------------------------------------------------TTTTTTTGTATTTTTTATTTTCCGTTTAACTTTACTTTTTGTGAAGTT---------------------------------------------------------------------------------G---------------------------------------------------------------------
droYak3 X:2350528-2350615 + TTACATT-------------TTATAACTCATACGCACTGTGTTTTATCACATGGAGTAGCATACTTTTTTGGGTCTTTTAAACTGTTCTTTTTTTTTTTT--------------------------------------------------------------------------------------------T---------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TCTGGTTCAGGTTTTGCACTCTAAAGGATATAGTCATCATCCTCTACCACTCTGCGCTTTCTGTTTTCTCGTATCTTTTAAATTGCTCTTATCTTCGCTTTTTGTGGGGGTGGAAGTGGGCTGGGCGAAGTCTTGAAATATTTTTGTAACAG---------TGACATATCAC--AGAAGTCCGGATATTAAATGTAAAGGAATACCTGTAAGGTGAAAGGTGTCTATGCGAACCCGAGGGGGTCCCATAACGAATCCGGAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
TCTGGTTCAGGTTTTGCACTC.................................................................................................................................................................................................................................................2114.0040301000000
........................................................................................................................................................................TCAC--AGAAGTCCGGATATTAAATGT...................................................................2513.0030100001010
......TCAGGTTTTGCACTCTAAAGGATA........................................................................................................................................................................................................................................2413.0030000000300
..................................................................TCTCGTATCTTTTAAATTGCTCTTA...........................................................................................................................................................................2513.0030000000300
..........................................TCTACCACTCTGCGCTTTCTG.......................................................................................................................................................................................................2112.0020200000000
.................................................................................................................AAGTGGGCTGGGCGAAGTC..................................................................................................................................1912.0020000000200
..................................................................TCTCGTATCTTTTAAATTGCTCT.............................................................................................................................................................................2312.0020000000200
..................................................................TCTCGTATCTTTTAAATTGCTCTTATCT........................................................................................................................................................................2812.0020200000000
..................................................................................................................................................................................GTCCGGATATTAAATGTAAA................................................................2012.0020000000020
...................................................................................................................................................................................TCCGGATATTAAATGTAAAGGAATAC.........................................................2612.0020000000200
..................................................................TCTCGTATCTTTTAAATTGCTCTTATC.........................................................................................................................................................................2712.0020000000200
................................................................................................................................................................................................................TAAGGTGAAAGGTGTCTATGCGAACC............................2612.0020100100000
...........................................................................................................................................................................C--AGAAGTCCGGATATTAAATG....................................................................2121.5030000000210
........................................................................................................................................................................TCAC--AGAAGTCCGGATATTAAAT.....................................................................2321.5030100000200
...............................................CACTCTGCGCTTTCTGTTTT...................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................GTCTATGCGAACCCGAGGGGGTCCC................2511.0010100000000
......................................................................................................................................................................................................................GAAAGGTGTCTATGCGAACCCGA.........................2311.0010100000000
.....................................................................................................................................................................................................................TGAAAGGTGTCTATGCGAACCCGA.........................2411.0010100000000
................................................................................................................GAAGTGGGCTGGGCGAAGTCTTG...............................................................................................................................2311.0010100000000
.CTGGTTCAGGTTTTGCACTC.................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................GTGGAAGTGGGCTGGGCGAAG....................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................TCTATGCGAACCCGAGGGGG....................2011.0010100000000
....................................TCATCCTCTACCACTCTGCGCTT...........................................................................................................................................................................................................2311.0010100000000
..............................................................................................TCGCTTTTTGTGGGGGTGGAAG..................................................................................................................................................2211.0010100000000
.......CAGGTTTTGCACTCTAAAGGAA.........................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................TCGCTTTTTGTGGGGGTGGAAGT.................................................................................................................................................2311.0010010000000
........................................................................................................................CTGGGCGAAGTCTTGAAATAT.........................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................GTCCCATAACGAATCCGGAGT2111.0010100000000
...................................................................................TGCTCTTATCTTCGCTTTTTGTGGGGG........................................................................................................................................................2711.0010100000000
..................................................TCTGCGCTTTCTGTT.....................................................................................................................................................................................................1521.0020000000200
..........................................................................................................................................................................................................TACCTGTAAGGTGAAAGGTGTCTATG..................................2611.0010100000000
..................................................................................................TTTTTGTGGGGGTGGAAG..................................................................................................................................................1811.0010000000010
......................................................................................................................................................................TATCAC--AGAAGTCCGGATATTAAATG....................................................................2620.5010100000000
..............TGCACTCTAAAGGATATAGTCATCC...............................................................................................................................................................................................................................2520.5010100000000
.........................................................................................................................................................................................................ATACCTGTAAGGTGAAAGG..........................................1920.5010000000100
........................................................................................................................................................................TCAC--AGAAGTCCGGATATTAAATG....................................................................2420.5010100000000
............TTTGCACTCTAAAGGATATAG.....................................................................................................................................................................................................................................2120.5010000000010
.........................................................................................................................................................................CAC--AGAAGTCCGGATATTAAAT.....................................................................2220.5010100000000
.................................................................................................................AAGTGGGCTGGGCGAAG....................................................................................................................................1750.2010000000100
.................................................................................................................................................................TGACATATCAC--AGAAGTCCGGAT............................................................................23200.1530300000000
...................................................................................................................................................................ACATATCAC--AGAAGTCCGGATAT..........................................................................23200.1530000000300
...........................................................................................................................................................................C--AGAAGTCCGGATATTAAATT....................................................................2180.1310000000010
.....................................................................................................TTGTGGGGGTGGAAGTGG...............................................................................................................................................18170.1220200000000
.................................................................................................................................................................TGACATATCAC--AGAAGTCCGGA.............................................................................22200.1020200000000
......................................................................................................................................................................TATCAC--AGAAGTCCGGATAT..........................................................................20200.1020200000000
.................................................................................................................................................................TGACATATCAC--AGAAGTCCGGATA...........................................................................24200.1020020000000
......................................................................................................................................................................TATCAC--AGAAGTCCGGATA...........................................................................19200.1020200000000
.............................................................................................................................................TTTTGTAACAG---------TGACATATCAC--AG......................................................................................24120.0810000000100
.....................................................................................................TTGTGGGGGTGGAAGTGGGC.............................................................................................................................................20160.0610100000000
..............................................................................................................................................TTTGTAACAG---------TGACATATCAC--AG......................................................................................23170.0610100000000
..................................................................................................................................................TAACAG---------TGACATATCAC--AGAAGTCCG...............................................................................26200.0510100000000
..................................................................................................................................................................GACATATCAC--AGAAGTCCGGAT............................................................................22200.0510100000000
..................................................................................................................................................TAACAG---------TGACATATCAC--AGAAGTCC................................................................................25200.0510010000000
.......................................................................................................................................................................ATCAC--AGAAGTCCGGATA...........................................................................18200.0510100000000
....................................................................................................................................................................CATATCAC--AGAAGTCCGGATA...........................................................................21200.0510000010000
................................................................................................................................................TGTAACAG---------TGACATATCAC--AGAAGTC.................................................................................26200.0510000000010
droPer2
TCTGGTTCAGGTTTTGCACTCTAAAAGATATAGTCAT---CCTCTACCACTCTGCGCTTTCTGTTTTCTCGTATCTTTTAAATTGCTCTTATCTTCGCTTTTTGTGGGGGTGGAAGTGGGCTGGGCGAAGTCTTGAAATATTTTTGTAACAG---------TGACATATCAC--AGAAGTCCGGATATTAAATGTAAAGGAATACCTGCAAGGTGGAAGGTGTCTATGCGAACCCGAGGGGGTCCCATAACGAATCCGGAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................TCTGCGCTTTCTGTTTTCTCGTATC...........................................................................................................................................................................................2511.001010000
...................................................................................................................................................................................................................GGTGGAAGGTGTCTATGCGAACCCGAGG.......................2811.001000001
......................................................................................................................................................................TATCAC--AGAAGTCCGGATATTAAAT.....................................................................2511.001000001
.....................................................................................................................................................................................................................TGGAAGGTGTCTATGCGAACCCGA.........................2411.001010000
...................................................................................................................GTGGGCTGGGCGAAGTCTTGA..............................................................................................................................2111.001010000
....................................................................................................................................................................................................................GTGGAAGGTGTCTATGCGAACCCGA.........................2511.001010000
..............................................................................................................TGGAAGTGGGCTGGGCGA......................................................................................................................................1811.001010000
..................................................................................................TTTTTGTGGGGGTGGAAA..................................................................................................................................................1860.171010000
....................................................................................................................................................................CATATCAC--AGAAGTCCGGAT............................................................................20200.153300000
..TGGTTCAGGTTTTGCACTCTA...............................................................................................................................................................................................................................................2170.141010000
TCTGGTTCAGGTTTTGCACTC.................................................................................................................................................................................................................................................2170.141010000
.......................................................................................................................................AAATATTTTTGTAACAG---------TGAC.................................................................................................21100.101010000
..........................................................................................................................................................................................................TACCTGCAAGGTGGAAGGTG........................................20170.061010000
...............GCACTCTAAAAGATATAGTCA..................................................................................................................................................................................................................................21200.051010000
droWil2
TTGC-----------------------------------------------------------------------------------------------------GGGGGCGGAAAGGGGCGTGGCAAAAATTTGAAATAAACTTGATCACT---------CTACATATTAC--ACGAGTCTACATACCAAAT---------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................CAAAAATTTGAAATAAACTTGATCACT---------C....................................................................................................28200.20404000
...............................................................................................................................AAAATTTGAAATAAACTTGATCACT---------C....................................................................................................26200.20404000
.........................................................................................................................................ATAAACTTGATCACT---------CTACAT...............................................................................................21200.05101000
.................................................................................................................................AATTTGAAATAAACTTGATCACT---------CTACA................................................................................................28200.05101000
.......................................................................................................................GCGTGGCAAAAATTTGAAATAAACTT.....................................................................................................................26200.05101000
droVir3
TTTCTGT---------------------------------------------------------TTTGCAATAACTTTTTTGTTGCTATTGCCATTGCTTGTTG----------------------------------------------------------------------------------------T---------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TCATTTA---------------------------------------------------------TTTTAAATAAATTTTGTTTTGTT---------GCTTATCATATGATTGCGAGTGAGATAGTTGACATGTTGAAATATTTGTGTGACAAATAATAGGCTTAAATATA-TACGCATGTGTGTGTATTAAAAATAAAAG--------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTCTTT---------------------------------------------------------TTT-------------------------CTTCTTTTTTTGTGAGGGAGGGCGTGCGCGGTGTTAAGT------ATATTTATGGAGCAG---------ACGTATAG-AC--AGACGT------------C---------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TTCTTG---------------------------------------------------------TTTTTTCTTATCTTTTCAGTTTTAGTTACCTTTATTTTT------------------------------------------------------------------------------------------T---------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTGGGCTTTGTTTTTGATATCATAACCATATACTCATGATTCGCCACCAATCT-------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCTTTTC-----------------------------------------------------CTATTTTTTCGCTGCTTTTAATTTGTTCCCTCTTTTTTTTTTTTTTGATGTGCATG----------------------------------------------------------------------------T---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTTCTTT--------------------------------------------------------TTTTTTTGTATTTTTTATTTTCCGTTTAACTTTACTTTTTGTGAAGTT---------------------------------------------------------------------------------G---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
TTACATT-------------TTATAACTCATACGCACTGTGTTTTATCACATGGAGTAGCATACTTTTTTGGGTCTTTTAAACTGTTCTTTTTTTTTTTT--------------------------------------------------------------------------------------------T---------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 05/18/2015 at 05:34 AM