ID:

dps_2829

 Coordinate:

XL_group3a:925051-925201 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.8 -12.5 -12.3 -11.8

Flybase annnotation

exon [dpse_GLEANR_10216:3]; CDS [Dpse\GA22308-cds]; intron [Dpse\GA22308-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron-
mature
star
  1. Unknown_group_8:3465-3487 +
  2. Unknown_group_297:11103-11125 +
  3. XL_group1e:1123734-1123756 +
  4. XR_group5:63934-63956 +
  5. Unknown_group_133:21993-22015 +
  6. Unknown_group_232:30601-30623 +
  7. 3:7137604-7137626 +
  8. 3:17723816-17723838 +
  9. 2:18332165-18332187 +
  10. 2:30638634-30638656 +
  11. Unknown_group_270:6196-6218 +
  12. Unknown_group_105:20356-20378 +
  13. XL_group1a:46736-46758 +
  14. XL_group1a:581404-581426 +
  15. Unknown_group_71:21582-21604 +
  16. Unknown_group_175:971-993 +
  17. Unknown_group_397:4059-4081 +
  18. Unknown_singleton_1726:1985-2007 +
  19. Unknown_singleton_2:2880-2902 +
  20. Unknown_singleton_771:90-112 +
  21. Unknown_singleton_2278:1148-1170 +
  22. Unknown_singleton_2278:6495-6517 +
  23. Unknown_group_38:6702-6724 +
  24. 3:6471353-6471375 +
  25. 3:19222979-19223001 +
  26. 2:18326012-18326034 +
  27. 2:23835013-23835035 +
  28. Unknown_group_180:19106-19128 +
  29. XL_group3a:1825114-1825136 +
  30. Unknown_group_114:10908-10930 +
  31. 4_group4:4310081-4310103 +
  32. Unknown_group_71:6798-6820 +
  33. Unknown_singleton_3367:859-881 +
  34. Unknown_group_363:519-541 +
  35. Unknown_singleton_1941:2201-2223 +
  36. Unknown_group_506:1518-1540 +
  37. Unknown_singleton_2501:919-941 +
  38. Unknown_group_494:7655-7677 +
  39. Unknown_singleton_3484:691-713 +
  40. Unknown_singleton_2626:319-341 +
  41. Unknown_group_8:162596-162618 -
  42. Unknown_group_172:3666-3688 -
  43. Unknown_singleton_871:3642-3664 -
  44. Unknown_group_422:16120-16142 -
  45. Unknown_singleton_3668:726-748 -
  46. Unknown_group_27:6476-6498 -
  47. Unknown_group_214:24197-24219 -
  48. Unknown_group_214:26874-26896 -
  49. 3:152520-152542 -
  50. 3:6221862-6221884 -
  51. 2:30212471-30212493 -
  52. dps_2829  XL_group3a:925083-925105 -
  53. XL_group3a:1576227-1576249 -
  54. 4_group3:912583-912605 -
  55. Unknown_group_377:3734-3756 -
  56. XL_group1a:246680-246702 -
  57. XL_group1a:313346-313368 -
  58. Unknown_singleton_1534:1324-1346 -
  59. Unknown_singleton_1624:361-383 -
  60. Unknown_group_32:51425-51447 -
  61. Unknown_group_53:10222-10244 +
  62. Unknown_group_139:25957-25979 +
  63. XL_group1e:8872285-8872307 +
  64. Unknown_singleton_1968:1041-1063 +
  65. Unknown_singleton_2344:2790-2812 +
  66. Unknown_group_16:37232-37254 +
  67. Unknown_group_75:7061-7083 +
  68. 3:619004-619026 +
  69. 2:20539348-20539370 +
  70. 2:28984504-28984526 +
  71. XL_group3a:2232875-2232897 +
  72. Unknown_group_223:13261-13283 +
  73. Unknown_singleton_1597:3170-3192 +
  74. 4_group4:6574292-6574314 +
  75. XR_group6:630769-630791 +
  76. XL_group1a:486076-486098 +
  77. Unknown_singleton_3743:1636-1658 +
  78. Unknown_singleton_2471:1079-1101 +
  79. Unknown_singleton_2051:1453-1475 +
  80. Unknown_singleton_375:953-975 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGCTGCCATGCTGCCACACGGTTGCAAGGACAGCTCTTTGGAAAAGGAGCCTCACTATAGTAATAGTATGTTTTTATACCCGCTACTCAAAATGAGTATTGGGGTATATTAGATTTGAGGTAAAGGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATACATATATTCTTGATCAGTCCAGGTCCAGGTGCACACGAGGATTACTTACTTGCGGCATCTGATTGTGAGCCT
*************************************************************************************************************************.....((((.........((((((....)))..)))........))))********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 SRR902010
ovaries
 GSM444067
head
 GSM343916
embryo
 M022
male body		 SRR902012
CNS imaginal disc
.........................................................................................................................TAAAGGTGGATGTGTGTAACG............................................................................................................. 21 0 1 4.00 4 0 2 2 0 0 0 0 0
............................................................................................................................AGGTGGATGTGTGTAACGTC........................................................................................................... 20 0 2 2.50 5 3 2 0 0 0 0 0 0
..........................................................................................................................AAAGGTGGATGTGTGTAACG............................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0
............................................................................................................................AGGTGGATGTGTGTAACGT............................................................................................................ 19 0 2 2.00 4 2 1 0 0 1 0 0 0
.............................................................................................................................GGTGGATGTGTGTAACGTCC.......................................................................................................... 20 0 3 1.67 5 5 0 0 0 0 0 0 0
...........................................................................................................................AAGGTGGATGTGTGTAACGTC........................................................................................................... 21 0 2 1.00 2 0 2 0 0 0 0 0 0
......................................................................................................................AGGTAAAGGTGGATGTGTGT................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................TAAAGGTGGATGTGTGTA................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................TTTGAGGTAAAGGTGGATGTGTGT................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................TTTGAGGTAAAGGTGGATGTGTG.................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................ATTTGAGGTAAAGGTGGATGT..................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................TAAAGGTGGATGTGTGTAAC.............................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................TAGATTTGAGGTAAAGGTGG......................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................GAGGTAAAGGTGGATGTGTGT................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................AAAGGTGGATGTGTGTAGCGT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................TGAGGTAAAGGTGGATGTGTG.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................AAGGTGGATGTGTGTAACGT............................................................................................................ 20 0 2 1.00 2 2 0 0 0 0 0 0 0
......................................................................GTTTTTAATCGCGCTACTC.................................................................................................................................................................. 19 3 20 0.90 18 17 1 0 0 0 0 0 0
.............................................................................................................................GGTGGATGTGTGTAACGTC........................................................................................................... 19 0 3 0.67 2 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GTCCAGGTGCACGCTCGGATT............................. 21 3 3 0.67 2 2 0 0 0 0 0 0 0
...........................................................................................................................AGGGTGGATGTGTGTAACGTC........................................................................................................... 21 1 6 0.67 4 2 1 0 0 0 0 1 0
............................................................................................................................GGGTGGATGTGTGTAACGTC........................................................................................................... 20 1 8 0.63 5 2 1 1 0 0 0 0 1
............................................................................................................................AGGTGGATGTGTGTAGCGTCC.......................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................................................................AAGGGTGGATGTGTGTAACGT............................................................................................................ 21 1 4 0.50 2 2 0 0 0 0 0 0 0
........................................................................................................................GTAAAGGTGGACGTGTGTAAC.............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................................................................AGGTGGATGTGTGTAGCGTC........................................................................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0
................................................................................................GTATTGGGGTATATTAGATTTGAGGTA................................................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTACTTACTTGCGGCATCTGATT........ 23 0 2 0.50 1 0 1 0 0 0 0 0 0
...........................................................................................................................AAGGTGGATGTGTGTAGCGTC........................................................................................................... 21 1 2 0.50 1 0 0 0 0 0 1 0 0
.......................................................................................................GGTATATTAGATTTGAGGTAA............................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0
...........................................................................................................................GAGGTGGATGTGTGTAACGTC........................................................................................................... 21 1 7 0.43 3 3 0 0 0 0 0 0 0
.............................................................................................................................GGTGGATGTGTGTAACGTCCA......................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0
.............................................................................................................................GGTGGATGTGTGTAGCGTC........................................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0 0
.........................................................................................................................TAGGGGTGGATGTGTGTAACG............................................................................................................. 21 2 8 0.25 2 1 1 0 0 0 0 0 0
..........................................................................................................................AGAGGTGGATGTGTGTAGCGTC........................................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0 0
............................................................................................................................GGGTGGATGTGTGTAGCGTC........................................................................................................... 20 2 8 0.25 2 0 1 1 0 0 0 0 0
.........................................................................................................................TAAGGGTGGATGTGTGTAA............................................................................................................... 19 1 5 0.20 1 0 0 1 0 0 0 0 0
..................................................................................................................................................GAAGGAATCGTTTCCGACCCCAT.................................................................................. 23 0 20 0.20 4 0 0 0 4 0 0 0 0
........................................................................................................................GTAGAGGTGGATGTGTGTAAC.............................................................................................................. 21 1 5 0.20 1 1 0 0 0 0 0 0 0
..........................................................................................................................AGAGGTGGATGTGTGTGACGTC........................................................................................................... 22 2 5 0.20 1 0 1 0 0 0 0 0 0
.......................................................................................TCAAAATGAGTATTGGGGTATATTAG.......................................................................................................................................... 26 0 20 0.20 4 4 0 0 0 0 0 0 0
.............................................................................................TGAGTATTGGGGTATATTAG.......................................................................................................................................... 20 0 20 0.20 4 0 0 4 0 0 0 0 0
.........................................................................................................................TAGAGGTGGATGTGTGTAACG............................................................................................................. 21 1 5 0.20 1 1 0 0 0 0 0 0 0
...........................................................................................................................AGGGTGGATGTGTGTAGCGTC........................................................................................................... 21 2 6 0.17 1 1 0 0 0 0 0 0 0
............................................................................................................................GGGTGGATGTGTGTAGCGTCC.......................................................................................................... 21 2 7 0.14 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................ACGGGATCTGATTGTGAGCG. 20 3 7 0.14 1 0 0 1 0 0 0 0 0
..........................................................................................................................AAGGGTGGATGTGTTTAACGT............................................................................................................ 21 2 7 0.14 1 0 1 0 0 0 0 0 0
....................................................................................................TGGGGTATATTAGATTTGAGG.................................................................................................................................. 21 0 7 0.14 1 1 0 0 0 0 0 0 0
............................................................................................................................GGGTGGATGTGTGTAACGTCC.......................................................................................................... 21 1 7 0.14 1 1 0 0 0 0 0 0 0
......................................................................................................GGGTATATTAGATTTGAGG.................................................................................................................................. 19 0 7 0.14 1 1 0 0 0 0 0 0 0
.............................................................................................................................GGTGAATGTGTGTAACGTCCA......................................................................................................... 21 1 9 0.11 1 1 0 0 0 0 0 0 0
..........................................................................................................................AGGGGTGGATGTGTGTAACGT............................................................................................................ 21 2 9 0.11 1 1 0 0 0 0 0 0 0
...........................................................................................................................GAGGTGGATGTGTGTAGCGTC........................................................................................................... 21 2 9 0.11 1 1 0 0 0 0 0 0 0
...........................................................................................................................GAGGTGGATGTGTGTAGCGT............................................................................................................ 20 2 9 0.11 1 1 0 0 0 0 0 0 0
............................................................................................................................................CGTCCAGAAGGAATCGTTTCC.......................................................................................... 21 0 20 0.10 2 0 2 0 0 0 0 0 0
........................................................................................................................................GTAACGTCCAGAAGGAATCGT.............................................................................................. 21 0 20 0.10 2 0 0 2 0 0 0 0 0
...................................................................................................................TTGTGGTAAAGGTGGATGTGT................................................................................................................... 21 1 20 0.10 2 2 0 0 0 0 0 0 0
........................................................................................................................GTAGGGGTGGATGTGTGTAA............................................................................................................... 20 2 10 0.10 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................TCGTTTCCGACCCCATAAAGTATATACAA..................................................................... 29 1 20 0.10 2 0 0 0 2 0 0 0 0
..............................................................................ACACGCTACTCACAATGAGT......................................................................................................................................................... 20 2 10 0.10 1 0 0 0 0 0 1 0 0
............................................................................................................................AGGTAGATGTGTGTAGCGTCC.......................................................................................................... 21 2 20 0.10 2 0 0 0 0 1 1 0 0
........................................................................................................................GTAGAGGTGGGTGTGTGTAAC.............................................................................................................. 21 2 11 0.09 1 1 0 0 0 0 0 0 0
.............................................................................................................................GGTGGATGTGTGTAACGTCTA......................................................................................................... 21 1 16 0.06 1 1 0 0 0 0 0 0 0
...................................................................................................................TTGTGGTAAAGGTGGATGT..................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................................TGTGGTAAAGGTGGATGTGT................................................................................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0
.............................................................................................................................GGTAGATGTGTGTGACGTCC.......................................................................................................... 20 2 20 0.05 1 0 0 0 0 1 0 0 0
..................................................................................................................TTTGTGGTAAAGGTGGATG...................................................................................................................... 19 1 20 0.05 1 0 0 0 1 0 0 0 0
..............................................................................................................TAGATTTGTGGTAAAGGTGGA........................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................AAGGTAGATGTGTGTGACGTC........................................................................................................... 21 2 20 0.05 1 0 0 0 0 1 0 0 0
.................................................................................................................ATTTGTGGTAAAGGTGGATG...................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TACGACGGTACGACGGTGTGCCAACGTTCCTGTCGAGAAACCTTTTCCTCGGAGTGATATCATTATCATACAAAAATATGGGCGATGAGTTTTACTCATAACCCCATATAATCTAAACTCCATTTCCACCTACACACATTGCAGGTCTTCCTTAGCAAAGGCTGGGGTATTTCATATATGTATATAAGAACTAGTCAGGTCCAGGTCCACGTGTGCTCCTAATGAATGAACGCCGTAGACTAACACTCGGA
**********************************************************************************.....((((.........((((((....)))..)))........))))************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902011
testis
 SRR902010
ovaries
 V112
male body		 M022
male body		 GSM343916
embryo
 GSM444067
head
...................................................................................................................................ACACACATTGCAGGTCTTCCTTAGC............................................................................................... 25 0 20 4.90 98 98 0 0 0 0 0 0 0
................................................................................................CATAACCCCATATAATCTAAACTCCAT................................................................................................................................ 27 0 2 1.00 2 0 0 2 0 0 0 0 0
..................................................................................................................................TACACACATTGCAGGTCTTCCTT.................................................................................................. 23 0 20 0.90 18 18 0 0 0 0 0 0 0
.....................................................................................................................................ACACATTGCAGGTCTTCCTTAG................................................................................................ 22 0 20 0.75 15 15 0 0 0 0 0 0 0
..................................................................................................................................TACACACATTGCAGGTCTTCC.................................................................................................... 21 0 20 0.50 10 10 0 0 0 0 0 0 0
.............................................................................................................................CCACCTACACACATTGCAGGTCT....................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................................................................CCACCTACACACATTGCAGGTCTTCCTT.................................................................................................. 28 0 2 0.50 1 0 1 0 0 0 0 0 0
......................................................................................................CCCATATAATCTAAACTCCAT................................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................................................................................CAGGTCTTCCTTAGCAAAGGCTGG...................................................................................... 24 0 20 0.45 9 9 0 0 0 0 0 0 0
.........................................................................................................................................................AGCAAAGGCTGGGGTATTTCATATA......................................................................... 25 0 20 0.40 8 8 0 0 0 0 0 0 0
.............................................................................................................................CCACCTACACACATTGCAGGT......................................................................................................... 21 0 3 0.33 1 0 1 0 0 0 0 0 0
.............................................................................................................................................CAGGTCTTCCTTAGCAAAGGCTGGGG.................................................................................... 26 0 20 0.30 6 6 0 0 0 0 0 0 0
..............................................................................................................................CACCTACACACATTGCAGGTCTTCCTT.................................................................................................. 27 0 20 0.20 4 0 4 0 0 0 0 0 0
.............................................................................................................................CCACCTACAGACATTGCAGGTCTTCCT................................................................................................... 27 1 5 0.20 1 0 1 0 0 0 0 0 0
............................................................................................................................................GCAGGTCTTCCTTAGCAAAGGCTGGGGT................................................................................... 28 0 20 0.15 3 0 0 0 0 3 0 0 0
................................................................................................................................CCTACACACATTGCAGGTCT....................................................................................................... 20 0 20 0.10 2 0 0 0 0 0 2 0 0
................................................................................................................................................................GCTGGGGTATTTCATATATGT...................................................................... 21 0 20 0.10 2 1 0 0 0 0 0 0 1
............................................................................................................................................................AAAGGCTGGGGTATTTCATATA......................................................................... 22 0 20 0.10 2 0 0 0 2 0 0 0 0
...............................................................................................................................................GGTCTTCCTTAGCAAAGGCTGGGG.................................................................................... 24 0 20 0.10 2 0 0 2 0 0 0 0 0
.................................................................................................................................................TCTTCCTTAGCAAAGGCTGGGGT................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0 0 0
.......................................................................................................................................ACATTGCAGGTCTTCCTTAGC............................................................................................... 21 0 20 0.10 2 0 0 0 2 0 0 0 0
..........................................................................................................................................TTGCAGGTCTTCCTTAGCAAAGGCT........................................................................................ 25 0 20 0.05 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................TTAGCAAAGGCTGGGGTA.................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................CACATTGCAGGTCTTCCTTAGC............................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0
............................................................................................TACTCATAACCCCATATAAT........................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................GTCTTCCTTAGCAAAGGCTGGGGTATT................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................TTAGCAAAGGCTGGGGTATTTCATATA......................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 1 0
...............................................................................................................................................GGTCTTCCTTAGCAAAGGCTGGGGTAT................................................................................. 27 0 20 0.05 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................CACGTAATGAACGAACGCC................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1
......................................................................................................................................................CTTAGCAAAGGCTGGGGTATTTCA............................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................CCTACACACATTGCAGGTCTTCCTTAG................................................................................................ 27 0 20 0.05 1 0 1 0 0 0 0 0 0
........................................................................................................................................................TAGCAAAGGCTGGGGTATTTC.............................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................TCATAACCCCATATAATCTA........................................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 1 0
...........................................................................................................................................TGCAGGTCCTCCTTAGCAAAGGCTG....................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0
....................................................................................................................................CACACATTGCAGGTCTTCCTTA................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................TTGCAGGTCCTCCTTAGCAAAGGCT........................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................AGAATATGGGCGAGGACTTTT.............................................................................................................................................................. 21 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group3a:925001-925251 - dps_2829 ATGCT---------------------------GC-CATGCTGCCA----CACGGTTGC----------AAGGAC-------------AGCTCTTTGGAAA-----A-----GGAG-----------------------------------------------------CCTCA--------CTATAGTAAT---AGTATG--------------------TTTTTAT-----------------------ACCCGCTACTCAAAATGAGTATTGGGGTATATTA-----GATTTGAGGTAAAGGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATACATATATTCTTGATCAGTC-----------------------CAGGTCCAGGTGCACACGAGGATTACTTACTTGCGGCATCTGATTGTGAGCCT
droPer2 scaffold_29:8631-8806 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAT-----------------------ACCCGATACTCAGAATGAGTATTGGGGTATATTA-----GATTTGAGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA----TGTATTCTTGATCAGTC-----------------------CAAGTACAGGTGCACACGAGGATTACTTACTTGCGGCATCTGATTGTGAGCCT
droWil2 scf2_1100000004968:629296-629486 - TCCTT------------------------------------------------------------------------------------------CAAAG-----GCAAGACACGT--------TACAA-------------------TAT--AT---------------------------------------ATATAT--------------------TTTTTAT-----------------------ACCCTT-----------GCAAAAATTGTATATTA-----ATTTTGGTCA-------GATGTGTGCAACGCATAGAAGGAAGCATCTCCGACCATATAGAGTATA----TATATTCTTGATCAGCATGACGAGACGAGTTCAAATAGCCATGTC---CGTCTG------------------------TCTGTCCGTCCGTCT
droVir3 scaffold_12958:2873492-2873684 - ACACT---------------------------ATCAATAGT-ACA----TACAGTTTG----------TCAAAT-------------AATTGTTTGCAAA----AT-----G-----------------------------------------A------AA-------------------ACATCATACC---AATTAA--------------------TTTTTATACCCTGAG----------------CCCATTA---AAAATGGGT-TAAGGGTATATTG-----TATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATA----TATATTCTTGATCCGTC----------------------------------------------------------------------------
droMoj3 scaffold_4234:5668-5847 + AGGCA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGGCAACCCAA------AATTGTTGTAAA---TATGTG--------------------TTTTTATACCCTGAACTCATTGAAAAT---G---------------GGAAATCAGGGTATAATGTTCAATGTTTTATTA-------AAAGTATGTAACAGGCAGAAGGAGGCGTGGAAGACCCCACAAAGTATA----TATATTCTTGATCAG------------------------------------------------------------------------------
droGri2 scaffold_15203:4045146-4045307 + TCTTT-----------------------------------------------------------------------------------------TGCAAA----AA-----A-----------------------------------------G------AA-------------------GTATGTTAAT---ATTGAC--------------------TTTTTAT-----------------------ACCCAGAACCCATT--AA--AAATGGGTAAA-TG-----GTTTTGTGGC-------AACGTATGTAACAGGCAGAAGGAAGCATCTCTGACCCCATAAAGTATA----TATATTCTTGATCAGCC-----------------------GAGTCGATGATGAACACG-----------------------------------
droAna3 scaffold_13250:388910-389103 - GGGCC---------------------------CG---TACGAACA----CATAAATTA----------AATCACAGCACTCA------------TATAA------A-----A-------AGAGTTAT---------------------------------------------A--------TTATTTTATTTTGTGTGTTATTTTATATCTTTTACCCAATTATTAT-----------------------ACCCT-----TGC--------AGAGGGTATTATA-----ATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCCATAAAGTATA----TATATTCTTGATCAG------------------------------------------------------------------------------
droBip1 scf7180000394936:3224-3399 + CAAAT---------------------------GG--------------------TTGCGTAAGCAAA----------------------ATTTTGGGAAG-----GTGAGAT------------------------------------ACA---CTCAA-----ACAACTCGT------AACCTGTG--------T------------------------AGACTTT-----------------------AACCGGTACTCGTA--GAATTTAAGGGTATATTG-----TAGTCGTGTG-------TATGAATTTAACATAGAGAAGGAATCATTGCCGACCCCACAAAGTATA----CATTTTCTTAATCAG------------------------------------------------------------------------------
droKik1 scf7180000302412:367615-367775 - ATATT---------------------------AC-CTGAC------------AGTTAC----------AAG----------------AGTTTTCT-----------------------------------------------------------TTTAAT--TAAAAACCTATAACTAGAA-------------ATACAA--------------------TTTTTAT-----------------------ACCCT---------------TGCAGGGTATTATA-----TTTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATAT--ATATATTCTTGATCAG------------------------------------------------------------------------------
droFic1 scf7180000454058:28830-29006 + GTGTC---------------------------GC---TGCT-ACGCACACA--AGCAA--------AGGAGCCGATCACT-----------------AAT-----A-----A------------------------------------ATA---C---------------TTA--------CATTTCTAAC---AGCGTG--------------------TTTTTAT-----------------------ACCC-----TTGCA--GAGCAG-AGGGTATTATA-----ATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATGTATTCTTGATCAG------------------------------------------------------------------------------
droEle1 scf7180000490551:2068-2214 - TTGGTTAAGGATT--------------------------TTG-----------ATTGC--------------------------------------CAAA-----A-----T-----------------------------------------A------AA-------------------C--------------TATT--------------------TTATTAT-----------------------ACCAGCTACTCGTA--GAGTAAAAAGGTATCCTG-----TATTCGTTGA-------AAAGTATGTAACAGCTAAAAGGAAGCGTTTCCGACCATTTAAAGTATA----TATATTCTTGATCAG------------------------------------------------------------------------------
droRho1 scf7180000772353:2072-2245 + CTGAC---------------------------GT-GTTGC---CG------------------------------------------------------CCCGC------CT-ACCATAGCGGTTAA--GTTGATGGGCCCACTATTC-----GT---------------------------------------TTAGTA--------------------TTTTTAT-----------------------ACCCGTTACTCGTA--GAGTAAAAGGGTATATTG-----TATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAG------------------------------------------------------------------------------
droBia1 scf7180000301275:6761-6932 - TG-CG---------------------------GC-CAT-----CG-------AGTTT------------------------TAAAAAAGTATTTTGAAAA-----A--------------------------------------------------------A------------------ATATATCAAT---A-CTCA--------------------TTATTAA-----------------------ACCCGTTACTCAAA--GAGTAGAAGGGTATACTA-----GATTCGTCGG-------AAAGTTTTTAATAGGTAGAAGGAGAAGTTTCCGAACCCATAAGGTTTACAAATATGTTCTTGATCAGAT-----------------------CA---------------------------------------------------
droTak1 scf7180000415385:356199-356365 - ACGTA---------------------------GC-CATCCTGCTA----CA---------------------------C-------------TT-CGGA-----------------------------------------------------------------------------------------------AACAAA--------------------TTTTTAT-----------------------ACCCGTTACTCGTA--GAGTAAAAGGATATATTG-----TGTTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCATTTCCGACCCTATAAAGTATA----TATATTCTTGATCTGCC-----------------------TG--TCCGTATGAACGCTGAGAT------------------------------
droEug1 scf7180000409713:9411-9580 - ATGTT---------------------------CA-CAGGTTG-----------GTTTA--------------------------------------CAGG-----G-----T------------TAGCT-------------------TTT---TTCAA---------CCTCATCATAGTATTGTA-------------G--------------------TAGTTAA-----------------------ACCCGTTACTCGTA--AAGTAAAAGGGCATATTA-----GATTCGTAGA-------AAAGTATATAACATGTAGAAGGAAGCATTTCCGACTATATAAAGTATA----TATATTCTTGATCAGT-----------------------------------------------------------------------------
dm3 chrX:22420745-22420909 - ACGCTAATGCTCACATACCGCCAAAAACTGCAAC-CCG-----CA---------------------------------CTCT------------TGAAA-----------------------------------------------------------------------------------------------AACGTG--------------------TTAAT----------------------TATACCCGTTACTCGTT--GAGTAAAAATCTTTACTA-----GATTCGTTGA-------AAAGTGTGCAACAGGCAGAAGAAAGCGTTTTCGACTATATAAAGTATA----TATATTCTTGATC--------------------------------------------------------------------------------
droSim2 2l:20983912-20984063 + ATGAT---------------------------TG-----------------------C----------AAG---------------GCGTTTTTTGCAAG-----C-----TGAGC--------TAG--------------------------------C--AG------------------------------ATAGTC--------------------CAATTAC-----------------------ACCCGTTACTCGTA--GAGTAAAAGGGTATACTA-----GATTCGTTGA-------AAAGTATGTAACAG---GAAGGAAGCGTTTCCGACAATATAAAGTATA----TATATTCTTGATAAG------------------------------------------------------------------------------
droSec2 scaffold_69:99380-99570 - CACAC---------------------------GT---CGC---------------------------------------------------------AAGCTGA------AT------------------------------------ACTCT-TATAAC--AATAAATCCA----------------------ATACAG--------------------TCATAAT-----------------------ACCCGTTACTCGTA--AATGAAAAGGGTATACTA-----GATTCG---------------TATGTGACAGGCAAAAGTAAGCCTTTCCGACTATACGAAGTATATATATATATTTTTGATCAGGATC--------------AATATCCGAGTC---GATATACTTAGGAATTATTTA------------------------
droYak3 v2_chrUn_2914:828-999 + CTGCC---------------------------AC-GC-----CCA----CA---------------------------CTTTTGAAAAATGCTT------------------------------TGGAA-------------------TTT---TTC--------------CA--------CTTTTGTATT---AGTCT------TG-------------TAATTAT-----------------------ACCCGTTACTCGTA--GAGTAAAAGGGTATACTA-----GATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATA----TATATTCTTGATCAG------------------------------------------------------------------------------
droEre2 scaffold_4770:803402-803558 + CAGCT---------------------------TT-----------------------------------------------------------TGTCTAG-----A-----TGAGC--------TTG----------------------------------------------------AATTGTCGTAAA---TTTGTT--------------------TTTTTAT-----------------------ACCCGTTACTCGTA--GAGTAAAAGGGTATACTA-----TATTCGTTCA-------AAAGTATGTAACTGGCAGAAGGAAACGTTTCCGACCATATAAAGAATATACATATATTCTTGATCAG------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ATGCT---------------------------GC-CATGCTGCCA----CACGGTTGC----------AAGGAC-------------AGCTCTTTGGAAA-----A-----GGAG-----------------------------------------------------CCTCA--------CTATAGTAAT---AGTATG--------------------TTTTTAT-----------------------ACCCGCTACTCAAAATGAGTATTGGGGTATATTA-----GATTTGAGGTAAAGGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATACATATATTCTTGATCAGTC-----------------------CAGGTCCAGGTGCACACGAGGATTACTTACTTGCGGCATCTGATTGTGAGCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................TAAAGGTGGATGTGTGTAACG....................................................................................................................................2114.0040000002020
.............................................................................................................................................................................................................................................................................................................AGGTGGATGTGTGTAACGTC..................................................................................................................................2022.5050300002000
...........................................................................................................................................................................................................................................................................................................AAAGGTGGATGTGTGTAACG....................................................................................................................................2012.0020200000000
.............................................................................................................................................................................................................................................................................................................AGGTGGATGTGTGTAACGT...................................................................................................................................1922.0040200011000
..............................................................................................................................................................................................................................................................................................................GGTGGATGTGTGTAACGTCC.................................................................................................................................2031.6750500000000
............................................................................................................................................................................................................................................................................................................AAGGTGGATGTGTGTAACGTC..................................................................................................................................2121.0020000002000
.......................................................................................................................................................................................................................................................................................................AGGTAAAGGTGGATGTGTGT........................................................................................................................................2011.0010000001000
..........................................................................................................................................................................................................................................................................................................TAAAGGTGGATGTGTGTA.......................................................................................................................................1811.0010100000000
...................................................................................................................................................................................................................................................................................................TTTGAGGTAAAGGTGGATGTGTGT........................................................................................................................................2411.0010100000000
...................................................................................................................................................................................................................................................................................................TTTGAGGTAAAGGTGGATGTGTG.........................................................................................................................................2311.0010000000100
..................................................................................................................................................................................................................................................................................................ATTTGAGGTAAAGGTGGATGT............................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................TAAAGGTGGATGTGTGTAAC.....................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................TA-----GATTTGAGGTAAAGGTGG................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................GAGGTAAAGGTGGATGTGTGT........................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................TGAGGTAAAGGTGGATGTGTG.........................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................AAGGTGGATGTGTGTAACGT...................................................................................................................................2021.0020200000000
..............................................................................................................................................................................................................................................................................................................GGTGGATGTGTGTAACGTC..................................................................................................................................1930.6720100001000
............................................................................................................................................................................................................................................................................GTATTGGGGTATATTA-----GATTTGAGGTA.......................................................................................................................................................2720.5010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTACTTGCGGCATCTGATT........2320.5010000001000
...................................................................................................................................................................................................................................................................................GGTATATTA-----GATTTGAGGTAA......................................................................................................................................................2120.5010100000000
..............................................................................................................................................................................................................................................................................................................GGTGGATGTGTGTAACGTCCA................................................................................................................................2130.3310100000000
...................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCAT.........................................................................................................23200.2040000000400
...................................................................................................................................................................................................................................................................TCAAAATGAGTATTGGGGTATATTA-----G.................................................................................................................................................................26200.2040400000000
.........................................................................................................................................................................................................................................................................TGAGTATTGGGGTATATTA-----G.................................................................................................................................................................20200.2040000000040
................................................................................................................................................................................................................................................................................TGGGGTATATTA-----GATTTGAGG.........................................................................................................................................................2170.1410100000000
..................................................................................................................................................................................................................................................................................GGGTATATTA-----GATTTGAGG.........................................................................................................................................................1970.1410100000000
.............................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCC.................................................................................................................21200.1020000002000
.........................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGT.....................................................................................................................21200.1020000000020
..........................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATATACAA............................................................................................29200.1020000000200
droPer2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAT-----------------------ACCCGATACTCAGAATGAGTATTGGGGTATATTA-----GATTTGAGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA----TGTATTCTTGATCAGTC-----------------------CAAGTACAGGTGCACACGAGGATTACTTACTTGCGGCATCTGATTGTGAGCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................TCAGAATGAGTATTGGGGTAT...........................................................................................................................................................................2180.131000001
...................................................................................................................................................................................................................................................................TCAGAATGAGTATTGGGGTA............................................................................................................................................................................2080.131000001
..................................................................................................................................................................................................................................................................CTCAGAATGAGTATTGGGGTA............................................................................................................................................................................2180.131010000
.............................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCC.................................................................................................................21200.051100000
droWil2
TCCTT------------------------------------------------------------------------------------------CAAAG-----GCAAGACACGT--------TACAA-------------------TAT--AT---------------------------------------ATATAT--------------------TTTTTAT-----------------------ACCCTT-----------GCAAAAATTGTATATTA-----ATTTTGGTCA-------GATGTGTGCAACGCATAGAAGGAAGCATCTCCGACCATATAGAGTATA----TATATTCTTGATCAGCATGACGAGACGAGTTCAAATAGCCATGTC---CGTCTG------------------------TCTGTCCGTCCGTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................T-----------------------ACCCTT-----------GCAAAAATTGTATATTA-----AT................................................................................................................................................................2620.50101000
........................................................................................................................................................................................................................................................................................................................TGCAACGCATAGAAGGAAGCATCTC..................................................................................................................25200.30600060
.......................................................................................................................................................................................................................................................................................................................GTGCAACGCATAGAAGGAAGC.......................................................................................................................21200.15300300
........................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCATGTC---CGTCTG------------------------TCTGTCC........24200.05100100
....................................................................................................................................................................................................................................................................................................................................................................................................TCAAATAGCCATGTC---CGTCTG------------------------...............21200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................CAGCATGACGAGACGAGTTCAAATAGCC.....................................................28200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................................ACGAGTTCAAATAGCCATGTC---CGTCT........................................26200.05100010
...............................................................................................................................................................................................................................................................................................................................................TCCGACCATATAGAGTATA----TATATT.......................................................................................25200.05100010
.................................................................................................................................................................................................................................................................................................................................................CGACCATATAGAGTATA----TA...........................................................................................19200.05100010
droVir3
ACACT---------------------------ATCAATAGT-ACA----TACAGTTTG----------TCAAAT-------------AATTGTTTGCAAA----AT-----G-----------------------------------------A------AA-------------------ACATCATACC---AATTAA--------------------TTTTTATACCCTGAG----------------CCCATTA---AAAATGGGT-TAAGGGTATATTG-----TATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATA----TATATTCTTGATCCGTC----------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGAA.........................................................................................................................28200.306000000000000000000000000000000000000060000000000000000000000000
...............................................................................................................................................................................................................................................................TTA---AAAATGGGT-TAAGGGTA............................................................................................................................................................................2040.251000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CCCATTA---AAAATGGGT-TAAGGGT.............................................................................................................................................................................2340.251000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCTC..................................................................................................................25200.102000000000000000000000000000000000020000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................GCATCTCCGACCCCACAAAGTATA----TA...........................................................................................26180.061000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................ATCTCCGACCCCACAAAGTA...................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTCC.................................................................................................................24200.051000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCT...................................................................................................................24200.051000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TAAGGGTATATTG-----TATTTGTGCAAA......................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTCCGACC.............................................................................................................28200.051000000000000000000000000000000000001000000000000000000000000000
droMoj3
AGGCA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGGCAACCCAA------AATTGTTGTAAA---TATGTG--------------------TTTTTATACCCTGAACTCATTGAAAAT---G---------------GGAAATCAGGGTATAATGTTCAATGTTTTATTA-------AAAGTATGTAACAGGCAGAAGGAGGCGTGGAAGACCCCACAAAGTATA----TATATTCTTGATCAG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGGC.............................................................................................................................................................................................................................................................................................2638.33252100040
...CA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--G................................................................................................................................................................................................................................................................................................2537.00211700040
...CA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGGC.............................................................................................................................................................................................................................................................................................2834.00121000020
...CA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GG...............................................................................................................................................................................................................................................................................................2632.678700010
...CA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGG..............................................................................................................................................................................................................................................................................................2731.675500000
................................TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGG..............................................................................................................................................................................................................................................................................................2531.334200020
...........................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAGGCGTGG...................................................................................................................21201.25252500000
................................TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGGCA............................................................................................................................................................................................................................................................................................2731.003300000
.................................C-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGGC.............................................................................................................................................................................................................................................................................................2531.003300000
....A---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGGC.............................................................................................................................................................................................................................................................................................2730.672100010
................................TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GG...............................................................................................................................................................................................................................................................................................2430.331100000
...CA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GT...............................................................................................................................................................................................................................................................................................2630.331000010
...CA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTC......................................................................................................................................................................................................................................................................................................2130.331000010
...CA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGGCA............................................................................................................................................................................................................................................................................................2930.331100000
....A---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--G................................................................................................................................................................................................................................................................................................2430.331100000
....A---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCA.....................................................................................................................................................................................................................................................................................................2130.331100000
....A---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GG...............................................................................................................................................................................................................................................................................................2530.331100000
................................TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGGCTT...........................................................................................................................................................................................................................................................................................2830.331100000
...CA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GTT..............................................................................................................................................................................................................................................................................................2730.331000010
...CA---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--TTT..............................................................................................................................................................................................................................................................................................2730.331000010
....A---------------------------TC-GATGGTGACC----C--------------------------------------------------------------------------------------------------ACT---CTCAAC--GGG..............................................................................................................................................................................................................................................................................................2630.331100000
..............................................................................................................................................................................................................................................ATTGAAAAT---G---------------GGAAATCAGGGTAT...........................................................................................................................................................................24200.204000004
..................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAGGAGG........................................................................................................................25200.051000010
..........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGAAGGAG.........................................................................................................................25200.051000001
droGri2
TCTTT-----------------------------------------------------------------------------------------TGCAAA----AA-----A-----------------------------------------G------AA-------------------GTATGTTAAT---ATTGAC--------------------TTTTTAT-----------------------ACCCAGAACCCATT--AA--AAATGGGTAAA-TG-----GTTTTGTGGC-------AACGTATGTAACAGGCAGAAGGAAGCATCTCTGACCCCATAAAGTATA----TATATTCTTGATCAGCC-----------------------GAGTCGATGATGAACACG-----------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCAT.....................................................................................................................18200.05101
droAna3
GGGCC---------------------------CG---TACGAACA----CATAAATTA----------AATCACAGCACTCA------------TATAA------A-----A-------AGAGTTAT---------------------------------------------A--------TTATTTTATTTTGTGTGTTATTTTATATCTTTTACCCAATTATTAT-----------------------ACCCT-----TGC--------AGAGGGTATTATA-----ATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCCATAAAGTATA----TATATTCTTGATCAG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................AATCACAGCACTCA------------TATAA------A-----A-------AGA.........................................................................................................................................................................................................................................................................................................................................2411.001010000
....................................................................................................................................................................................................................................................................................................................AGTGTGCAACGCAGTGAAGG...........................................................................................................................20200.204400000
..........................................................................................................................................................................................................................................................................................TA-----ATTTTGGTCA-------AAAGTGTGCAACGC...................................................................................................................................26200.051000100
droBip1
CAAAT---------------------------GG--------------------TTGCGTAAGCAAA----------------------ATTTTGGGAAG-----GTGAGAT------------------------------------ACA---CTCAA-----ACAACTCGT------AACCTGTG--------T------------------------AGACTTT-----------------------AACCGGTACTCGTA--GAATTTAAGGGTATATTG-----TAGTCGTGTG-------TATGAATTTAACATAGAGAAGGAATCATTGCCGACCCCACAAAGTATA----CATTTTCTTAATCAG------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATATT---------------------------AC-CTGAC------------AGTTAC----------AAG----------------AGTTTTCT-----------------------------------------------------------TTTAAT--TAAAAACCTATAACTAGAA-------------ATACAA--------------------TTTTTAT-----------------------ACCCT---------------TGCAGGGTATTATA-----TTTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATAT--ATATATTCTTGATCAG------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTGTC---------------------------GC---TGCT-ACGCACACA--AGCAA--------AGGAGCCGATCACT-----------------AAT-----A-----A------------------------------------ATA---C---------------TTA--------CATTTCTAAC---AGCGTG--------------------TTTTTAT-----------------------ACCC-----TTGCA--GAGCAG-AGGGTATTATA-----ATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATGTATTCTTGATCAG------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTGGTTAAGGATT--------------------------TTG-----------ATTGC--------------------------------------CAAA-----A-----T-----------------------------------------A------AA-------------------C--------------TATT--------------------TTATTAT-----------------------ACCAGCTACTCGTA--GAGTAAAAAGGTATCCTG-----TATTCGTTGA-------AAAGTATGTAACAGCTAAAAGGAAGCGTTTCCGACCATTTAAAGTATA----TATATTCTTGATCAG------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTGAC---------------------------GT-GTTGC---CG------------------------------------------------------CCCGC------CT-ACCATAGCGGTTAA--GTTGATGGGCCCACTATTC-----GT---------------------------------------TTAGTA--------------------TTTTTAT-----------------------ACCCGTTACTCGTA--GAGTAAAAGGGTATATTG-----TATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAG------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TG-CG---------------------------GC-CAT-----CG-------AGTTT------------------------TAAAAAAGTATTTTGAAAA-----A--------------------------------------------------------A------------------ATATATCAAT---A-CTCA--------------------TTATTAA-----------------------ACCCGTTACTCAAA--GAGTAGAAGGGTATACTA-----GATTCGTCGG-------AAAGTTTTTAATAGGTAGAAGGAGAAGTTTCCGAACCCATAAGGTTTACAAATATGTTCTTGATCAGAT-----------------------CA---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACGTA---------------------------GC-CATCCTGCTA----CA---------------------------C-------------TT-CGGA-----------------------------------------------------------------------------------------------AACAAA--------------------TTTTTAT-----------------------ACCCGTTACTCGTA--GAGTAAAAGGATATATTG-----TGTTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCATTTCCGACCCTATAAAGTATA----TATATTCTTGATCTGCC-----------------------TG--TCCGTATGAACGCTGAGAT------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ATGTT---------------------------CA-CAGGTTG-----------GTTTA--------------------------------------CAGG-----G-----T------------TAGCT-------------------TTT---TTCAA---------CCTCATCATAGTATTGTA-------------G--------------------TAGTTAA-----------------------ACCCGTTACTCGTA--AAGTAAAAGGGCATATTA-----GATTCGTAGA-------AAAGTATATAACATGTAGAAGGAAGCATTTCCGACTATATAAAGTATA----TATATTCTTGATCAGT-----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ACGCTAATGCTCACATACCGCCAAAAACTGCAAC-CCG-----CA---------------------------------CTCT------------TGAAA-----------------------------------------------------------------------------------------------AACGTG--------------------TTAAT----------------------TATACCCGTTACTCGTT--GAGTAAAAATCTTTACTA-----GATTCGTTGA-------AAAGTGTGCAACAGGCAGAAGAAAGCGTTTTCGACTATATAAAGTATA----TATATTCTTGATC--------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................TGTGCAACAGGCAGAAGAAAGCGTT....................................................................................................................25211.00220000000000000000000000000000000000000000000000000200000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000200000000001010100000200300000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000022300000
.....................................................................................................................................................................................................................................................................................TTTACTA-----GATTCGTTGA-------AAAG.............................................................................................................................................2151.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000
......................AAAAACTGCAAC-CCG-----CA---------------------------------CTCT------------.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TGTGCAACAGGCAGAAGAAAGCGT.....................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................................................................................AGCGTTTTCGACTATATAAAGTATA----.............................................................................................2531.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGAAGAAAGCGTTTTCGACTAT...........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................CTA-----GATTCGTTGA-------AAAGTGTG.........................................................................................................................................2150.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CGTTTTCGACTATATAAAGTA...................................................................................................2150.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AAGTGTGCAACAGGCAGAAG............................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................GCAACAGGCAGAAGAAAGCGT.....................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................................................................................................................................................................................................................GCAACAGGCAGAAGAAAGCGTT....................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTGTGCAACAGGCAGAA.............................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GTGCAACAGGCAGAAGAAAGCGTTT...................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
........................................................................................................................................................................................................................................................................................................................TGCAACAGGCAGAAGAAAGCGT.....................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................GTGCAACAGGCAGAAGAAAGCG......................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................TTACTA-----GATTCGTTGA-------AAAGT............................................................................................................................................2150.4020000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GACTATATAAAGTATA----TATATTCTTGATC--------------------------------------------------------------------------------29200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000020400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGTTT...................................................................................................................21200.3570000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000002000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000
............................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAGCGTTTTC.................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................CTA-----GATTCGTTGA-------AAAGTG...........................................................................................................................................1970.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TACTA-----GATTCGTTGA-------AAAGTG...........................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGTT....................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000010000000000000000000000000
.........................................................................................................................................................................................................................................................TACCCGTTACTCGTT--GAGTA....................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TA-----GATTCGTTGA-------AAAGTGTG.........................................................................................................................................2080.1310000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCG......................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGT.....................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
............................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAGCGT.....................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................ACTATATAAAGTATA----TATATTCTTGA..................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TATAAAGTATA----TATATTCTTG...................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TACTA-----GATTCGTTGA-------AAAG.............................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TTTACTA-----GATTCGTTGA-------AAAT.............................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................TAAAGTATA----TATATTCTTGA..................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TATATAAAGTATA----TATATTCTTGAT.................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATGAT---------------------------TG-----------------------C----------AAG---------------GCGTTTTTTGCAAG-----C-----TGAGC--------TAG--------------------------------C--AG------------------------------ATAGTC--------------------CAATTAC-----------------------ACCCGTTACTCGTA--GAGTAAAAGGGTATACTA-----GATTCGTTGA-------AAAGTATGTAACAG---GAAGGAAGCGTTTCCGACAATATAAAGTATA----TATATTCTTGATAAG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................ACTCGTA--GAGTAAAAGGGTAT...........................................................................................................................................................................21207.301460000146000000000000
.............................................................................................................................................................................................................................................................................TAAAAGGGTATACTA-----GATTCGTTGA-------A................................................................................................................................................26202.1543000000000032092000
.................................................................................................................................................................................................................................................................................AGGGTATACTA-----GATTCGTTGA-------AAAGTA...........................................................................................................................................27202.1042000000042000000000
...................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAG---GA..............................................................................................................................24101.9019000000121510000000
...................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAG---GAAGGA..........................................................................................................................2841.75700000031300000000
......................................................................................................................................................................................................................................................................................................................TATGTAACAG---GAAGGAAGCGTTTC..................................................................................................................2441.25500000000005000000
...................................................................................................................................................................................................................................................................TCGTA--GAGTAAAAGGG..............................................................................................................................................................................16201.2024000000000024000000
..............................................................................................................................................................................................................................................................................AAAAGGGTATACTA-----GATTCGTTGA-------A................................................................................................................................................25201.1022000000170005000000
...................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAG---GAAGG...........................................................................................................................2741.00400000001120000000
..........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAG---GAAGGAAGCGTT....................................................................................................................2740.75300000010101000000
......................................................................................................................................................................................................................................................................................................................TATGTAACAG---GAAGGAAGCGTT....................................................................................................................2240.75300000003000000000
..........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAG---GAAGGAAGC.......................................................................................................................2440.75300000000003000000
.......................................................................................................................................................................................................................................................................A--GAGTAAAAGGGTATACTA-----GATTCGT...........................................................................................................................................................26200.7014000000000014000000
..........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAG---GAAGGAAGCG......................................................................................................................2540.50200000001000010000
......................................................................................................................................................................................................................................................................................................................TATGTAACAG---GAAGGAAGCGTTT...................................................................................................................2340.50200000000002000000
......................................................................................................................................................................................................................................................................................................................TATGTAACAG---GAAGGAAGCGTTTCCGA...............................................................................................................2740.50200000000002000000
......................................................................................................................................................................................................................................................................................................................TATGTAACAG---GAAGGAAGC.......................................................................................................................1940.50200000000002000000
....................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAG---GAAGGA..........................................................................................................................2740.50200000001010000000
...............................................................................................................................................................................................................................TTAC-----------------------ACCCGTTACTCGTA--GAGTAAAA.................................................................................................................................................................................2670.43300000002010000000
...................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAG---GAA.............................................................................................................................25100.40400000001300000000
........................................................................................................................................................................................................................................................................................................................TGTAACAG---GAAGGAAGC.......................................................................................................................1750.40200000000002000000
...............................................................................................................................................................................................................................................................................AAAGGGTATACTA-----GATTCGTTGA-------AAAG.............................................................................................................................................27200.35700000070000000000
......................................................................................................................................................................................................................................................................TA--GAGTAAAAGGGTATACTA-----GA................................................................................................................................................................22200.35700000000007000000
...............................................................................................................................................................................................................................TTAC-----------------------ACCCGTTACTCGTA--GAGTAAAAG................................................................................................................................................................................2770.29200000002000000000
......................................................................................................................................................................................................................................................................................................................TATGTAACAG---GAAGGAAGCGTTTCC.................................................................................................................2540.25100000000001000000
..........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAG---GAAGGAAGCGTC....................................................................................................................2740.25100000000001000000
..........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAG---GAAGGAAGCT......................................................................................................................2540.25100000010000000000
.....................................................................................................................................................................................................................................................................................................................GTATGTAACAG---GAAGGAAGCGTT....................................................................................................................2340.25100000000001000000
..............................................................................................TGCAAG-----C-----TGAGC--------TAG--------------------------------C--AG------------------------------ATAGTC--------------------CAAT...................................................................................................................................................................................................................................2840.25100000010000000000
..........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAG---GAAGGAAGCGT.....................................................................................................................2640.25100000000100000000
................................................................................................................................................................................................................................TAC-----------------------ACCCGTTACTCGTA--GAGTAAAAG................................................................................................................................................................................2680.25200000000011000000
......................................................................................................................................................................................................................................................................................................................TATGTAACAG---GAAGGAAGCGTTTT..................................................................................................................2440.25100000000001000000
...................................................................................................................................................................................................................................................................TCGTA--GAGTAAAAGGGTATACT........................................................................................................................................................................22200.25500000000005000000
...................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAG---GAAG............................................................................................................................26100.20200000002000000000
......................................................................................................................................................................................................................................................................TA--GAGTAAAAGGGTATA..........................................................................................................................................................................17200.20400000000004000000
.............................................................................................................................................................................................................................................................................TAAAAGGGTATACTA-----GATTCGTTGA-------AA...............................................................................................................................................27200.20400000000004000000
...................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAG---GAAGGT..........................................................................................................................2850.20100000001000000000
........................................................................................................................................................................................................................................................................................ACTA-----GATTCGTTGA-------AAAGTAT..........................................................................................................................................21200.15300000000201000000
...................................................................................................................................................................................................................................................................TCGTA--GAGTAAAAGGGTATACTA-----GA................................................................................................................................................................25200.15300030000000000000
..............................................................................................................................................................................................................................................................................AAAAGGGTATACTA-----GATTCGTTGA-------AAAG.............................................................................................................................................28200.15300000030000000000
.................................................................................................................................................................................................................................................................................AGGGTATACTA-----GATTCGTTGA-------AAA..............................................................................................................................................24200.15300000003000000000
................................................................................................................................................................................................................................TAC-----------------------ACCCGTTACTCGTA--GAGTAAAAGG...............................................................................................................................................................................2770.14100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................GTATA----TATATTCTTGATA................................................................................18140.14200000002000000000
..............................................................................................................................................................................................................................................................................................................................AG---GAAGGAAGCGTTTCCG................................................................................................................1890.11100000000001000000
...............................................................................................................................................................................................................................TTAC-----------------------ACCCGTTACTCG.............................................................................................................................................................................................1690.11100000001000000000
...........................................................................................................................................................................................................................................................................AGTAAAAGGGTATACTA-----GATTCGTTGA-------AA...............................................................................................................................................29200.10200000002000000000
.....................................................................................................................................................................................................................................................................GTA--GAGTAAAAGGGT.............................................................................................................................................................................15200.10200000000002000000
................................................................................................................................................................................................................................................................................AAGGGTATACTA-----GATTCGTTGA-------AAAG.............................................................................................................................................26200.10200000000000020000
...................................................................................................................................................................................................................................................................TCGTA--GAGTAAAAGGGTATACTA-----GATT..............................................................................................................................................................27200.10200000000010010000
....................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAG---GAA.............................................................................................................................24110.09100000001000000000
..............................................................................................................................................................................................................................................................................AAAAGGGTATACTA-----GATTCGTTGA-------AAA..............................................................................................................................................27200.05100000000010000000
.................................................................................................................................................................................................................................................................................AGGGTATACTA-----GATTCGTTG.........................................................................................................................................................20200.05100000001000000000
...............................................................................................................................................................................................................................................................................AAAGGGTATACTA-----GATTCGTTGA-------A................................................................................................................................................24200.05100000000000010000
...............................................................................................................................................................................................................................TTAC-----------------------ACCCGTTACTCGTA--GAGTTT...................................................................................................................................................................................24200.05100000000010000000
..................................................................................................................................................................................................................................................................................................ATTCGTTGA-------AAAGTATGTAACAG---G...............................................................................................................................24200.05100000001000000000
...................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAG---GAATT...........................................................................................................................27200.05100000000100000000
......................................................................................................................................................................................................................................................................................ATACTA-----GATTCGTTGA-------AAAGTAT..........................................................................................................................................23200.05100000000100000000
....................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACAG---G...............................................................................................................................22200.05100000000001000000
.............................................................................................................................................................................................................................................................CGTTACTCGTA--GAGTA....................................................................................................................................................................................16200.05100000000001000000
........................................................................................................................................................................................................................................................................................ACTA-----GATTCGTTGA-------AAAGT............................................................................................................................................19200.05110000000000000000
................................................................................................................................................................................................................................................................TACTCGTA--GAGTAAAAGGGT.............................................................................................................................................................................20200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAG---GA..............................................................................................................................17200.05100000000001000000
...............................................................................................................................................................................................................................................................................AAAGGGTATACTA-----GATTCGTTGA-------AAAGTA...........................................................................................................................................29200.05100000010000000000
...................................................................................................................................................................................................................................................................TCGTA--GAGTAAAAGGGTATA..........................................................................................................................................................................20200.05100000000001000000
.................................................................................................................................................................................................................................................................ACTCGTA--GAGTAAAAGGGT.............................................................................................................................................................................19200.05100000000000100000
..........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAG---GAA.............................................................................................................................18200.05100000000001000000
...............................................................................................................................................................................................................................................................................AAAGGGTATACTA-----GATTCGTTG.........................................................................................................................................................22200.05100000000000010000
....................................................................................................................................................................................................................................................................CGTA--GAGTAAAAGGG..............................................................................................................................................................................15200.05100000000001000000
....................................................................................................................................................................................................................................................................CGTA--GAGTAAAAGGGTATACTA-----GATT..............................................................................................................................................................26200.05100000000001000000
......................................................................................................................................................................................................................................................................TA--GAGTAAAAGGGTATACTA-----..................................................................................................................................................................20200.05100000000001000000
droSec2
CACAC---------------------------GT---CGC---------------------------------------------------------AAGCTGA------AT------------------------------------ACTCT-TATAAC--AATAAATCCA----------------------ATACAG--------------------TCATAAT-----------------------ACCCGTTACTCGTA--AATGAAAAGGGTATACTA-----GATTCG---------------TATGTGACAGGCAAAAGTAAGCCTTTCCGACTATACGAAGTATATATATATATTTTTGATCAGGATC--------------AATATCCGAGTC---GATATACTTAGGAATTATTTA------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................ATATATATTTTTGATCAGGA............................................................................20180.0610010
..............................................................................................................................................................................................................................................................................AAAAGGGTATACTA-----GATTCG---------------T............................................................................................................................................21200.0510010
droYak3
CTGCC---------------------------AC-GC-----CCA----CA---------------------------CTTTTGAAAAATGCTT------------------------------TGGAA-------------------TTT---TTC--------------CA--------CTTTTGTATT---AGTCT------TG-------------TAATTAT-----------------------ACCCGTTACTCGTA--GAGTAAAAGGGTATACTA-----GATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATA----TATATTCTTGATCAG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCCGACC.............................................................................................................28201.1022002200000000
........................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTTC..................................................................................................................25200.8016001600000000
........................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTT...................................................................................................................24200.35707000000000
..................................................................................................................................................................................................................................................................................................ATTCGTTGA-------AAAGTATGTAACAGGCA................................................................................................................................26200.20404000000000
...................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGCAG...............................................................................................................................26200.10200200000000
.................................................................................................................................................................................................................................AT-----------------------ACCCGTTACTCGTA--GAGT.....................................................................................................................................................................................20200.05100100000000
......................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCGTT....................................................................................................................25200.05100010000000
.......................................................................................................................................................................................................................................................................................................................................GAAGCGTTTCCGACCATATA........................................................................................................20200.05101000000000
.............................................................................................................................................................................................................................................................................TAAAAGGGTATACTA-----GATTCGTT..........................................................................................................................................................23200.05100010000000
droEre2
CAGCT---------------------------TT-----------------------------------------------------------TGTCTAG-----A-----TGAGC--------TTG----------------------------------------------------AATTGTCGTAAA---TTTGTT--------------------TTTTTAT-----------------------ACCCGTTACTCGTA--GAGTAAAAGGGTATACTA-----TATTCGTTCA-------AAAGTATGTAACTGGCAGAAGGAAACGTTTCCGACCATATAAAGAATATACATATATTCTTGATCAG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................ATGTAACTGGCAGAAGGA..........................................................................................................................1850.2010100000
.........................................................................................................................................................................................................................................................................................................................................AACGTTTCCGACCATATAAAG.....................................................................................................21200.0510000010
................................................................................................................................................................................................................................................................TACTCGTA--GAGTAAAAGGGT.............................................................................................................................................................................20200.0510000100

Generated: 05/18/2015 at 05:35 AM