ID:

dps_281

 Coordinate:

2:1109649-1109813 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.1

Flybase annnotation

exon [Dpse\GA15957:4]; CDS [Dpse\GA15957-cds]; CDS [Dpse\GA15957-cds]; exon [Dpse\GA15957:5]; intron [Dpse\GA15957-in]

No Repeatable elements found

mature
  1. dps_281  2:1109727-1109746 +
  2. 2:16958880-16958899 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGCAGCGAGACGAGCCAAAAACATACGAATATAGATATCAATTTGGGCAGTCAACATAAGAGGGAAACAAATGATAATAACGACAATAAAATTGATAAATCGACGCCGACGGCAGCGCCTGTAGCAGCGACAGCAGCAGCGACAGCGACACTTGAAATCATAACTCCGTCAAATGTATGTGCAAACGGAAACACGACCGTCACGACGACATCAGCATCCCCTCCAGCATCAGCAGCAAATACAAAAGCGACGACGACTGTTTCA
********************************************************************************************************************************.(((........((...((((((.((((.............)))).))).))).....))...........)))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 GSM444067
head
............................................................................................................................................................................................................................................CAAATACAAAAGCGACGACGACT...... 23 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................ATCCCCTCCAGCATCAGCAG............................. 20 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................TCCCCTCCAGCATCAGCAGCAAATACA..................... 27 0 1 1.00 1 1 0 0 0
................................................................................................................................CGACAGCAGCAGCGACAGCG..................................................................................................................... 20 0 2 1.00 2 0 0 2 0
..................................................................................................................................................................................TGTGCAAACGGAAACACGACCGTC............................................................... 24 0 1 1.00 1 0 1 0 0
.......................................CAATTTGGGCAGTCAACATA.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0
..GCAGCGAGACGAGCCAAAAACA................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1
...........................................................................................................................AGCAGCGACAGCAGCAGCGACAGC...................................................................................................................... 24 0 4 0.25 1 1 0 0 0
.........................................................................................................................................CAGCGATAGCGTCACTTGAT............................................................................................................ 20 3 6 0.17 1 1 0 0 0
................................................................................................................................CGACAGCAGCAGCGACAGC...................................................................................................................... 19 0 7 0.14 1 1 0 0 0
.............................................................................................................................CGGCGACAGCAGCAGCGACA........................................................................................................................ 20 1 18 0.06 1 1 0 0 0
...................................................................................................................................CAGCAGCAGCGACAGCGAC................................................................................................................... 19 0 18 0.06 1 1 0 0 0

Anti-sense strand reads

GTCGTCGCTCTGCTCGGTTTTTGTATGCTTATATCTATAGTTAAACCCGTCAGTTGTATTCTCCCTTTGTTTACTATTATTGCTGTTATTTTAACTATTTAGCTGCGGCTGCCGTCGCGGACATCGTCGCTGTCGTCGTCGCTGTCGCTGTGAACTTTAGTATTGAGGCAGTTTACATACACGTTTGCCTTTGTGCTGGCAGTGCTGCTGTAGTCGTAGGGGAGGTCGTAGTCGTCGTTTATGTTTTCGCTGCTGCTGACAAAGT
***************************************************************.(((........((...((((((.((((.............)))).))).))).....))...........)))******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902012
CNS imaginal disc
 V112
male body		 M022
male body		 M040
female body
 GSM444067
head
....................................................................................................................................................................................................TGGCAGTGCGGCTGTTGTC.................................................. 19 2 2 1.50 3 3 0 0 0 0
..........................................................................................................GGCTGCCGTCGCGGACATCGT.......................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................................................GCAATGCTGCTGTAGTCGTTG.............................................. 21 2 1 1.00 1 0 0 1 0 0
........................................................................................................................................................................................................................TAGGGGAGGTCGTATTC................................ 17 1 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................................TGGCAGTGCGGCTGTTGTCA................................................. 20 3 5 0.20 1 1 0 0 0 0
...........................................................................................................................................................................................................................GCTAGGTCGTAGTCGTCGTGTA........................ 22 3 6 0.17 1 0 1 0 0 0
....................................................................................................................................................................................................TGGCAGTGCGGCTGTTGT................................................... 18 2 6 0.17 1 1 0 0 0 0
................................................................................................................................GCTGTCGTCGTCGCTGTC....................................................................................................................... 18 0 8 0.13 1 0 0 0 0 1
...............................................................................................................................CGCTGTCGTCGTCGCTGTC....................................................................................................................... 19 0 8 0.13 1 0 0 0 1 0
....................................................................................................................................................................................................TGGTAGTGCCGCGGTAGTC.................................................. 19 3 20 0.05 1 0 0 0 1 0
.......................................................................................................................................................................................................AAGTGCTGCTGTAGTTCTA............................................... 19 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:1109599-1109863 + dps_281 CAGCAGCGAGAC---------------------------------------------------------GAGC---------CAAAAACATACGAATAT----AGATATCAATTTGGGCAGTCAA--------CATAAGAGGGAAACAAATGATAATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAC---------------------------AATAAAATTGATAAATCG---------------ACGCCGACGGCAGCGCCTGTAGCAGCGACAGCAGCAGCGACAGCGACACTTGAAATCATAAC------------------TCCGTCAAATGTATGTGCA--AAC-----------------------------------------------------GG--------AAACACGA---CCGTCACGACGACATCAGCATCCCCTC-------------CAGCATCAGCAGCAAA----TACAAAAGC------GA---CGACGACTGTTTC-------------------------------------A
droPer2 scaffold_7:3894947-3895211 + CAGCAGCGAGAC---------------------------------------------------------GAGC---------CAAAAACATACGAATAT----AGATATCAATTTGGGCAGGCAA--------CATAAGAGGGAAACAAATGATAATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAC---------------------------AATAAAATTGATAAATCG---------------ACGCCGACGGCAGCGCCTGTAGCAGCGACAGCAGCAGCGACAGCGACACTTGAAATCATAAC------------------TCCGTCAAATGTATGTGCA--AAC-----------------------------------------------------GG--------AAACACGA---CCGTCACGACGACATCAGCATCCCCTC-------------CAGCATCAGCAGCAAA----AACAAAAGC------GA---CGACGACTGTTTC-------------------------------------A
droWil2 scf2_1100000004961:4996092-4996354 - TACCAACAAGAC---------------------------------------------------------GAGC---------TAGAAATGGCCAGGGAA----AG----------------------------------------GCTGGCAGAGGCAGTGAAGCAACAGCAAC---TGCAGCAGCAACAA---CAACAGCAGCAACAACAACAGCAGCA--G-------------------------------------------------------------------------------------------------------------------CAACAACA--GCAACAGCAACAAC---------AAC-----------------------------------------------AGCAGCAGCAACA---------------------------ACAACAGCAGCAACAACAAC------------------AGCAGCAGCAGCAACAGCA--GC-----A------------------------------------------------AC--------AGCAACAA---CAGCAGCAGCAACAGCAACAGCAACAA-------------CAGCAGCAACAACAAC----TGCAGCAGC------AA---CAACAACAGCAGC-------------------------------------A
droVir3 scaffold_12726:610564-610795 + CAGCAGCGACGC---------------------------------------------------------CAAA------------G-AAAGAG-GCGCA--CAA----------------------------------------AGCAAACAAAA-----------------------ATTACATAA-----------------------AA--------------------------------CAACAGCAAAAAAAAAAAACGAG---------------------------------------------GCA--AAC-----------------------------------------------------------------------------------A---------------ACAGCGCGAGCAGCGGCGGCAGCAGCAGCAGCAGCAGCGGCAGCAAAACCAAAAAGCGAATC------------------TAAATTAAAATCGT---------------------------------------------------------------AAATCAACGCAAATCACA---CAGCGACAGCGACAGCAGCGGCACCGG-------------CAGCGGCAGCGGCAA----------AAG------------AA---GAAGCAG-C-------------------------------------
droMoj3 scaffold_1658:4112-4392 - CAACAATGAGCCGCAGCATTTCTACATGTGTAAAACTAAAGACTCAGCTCTGTGAATATAAGAGCTGAACAGC------------A-AAAGCA-------------------------------------------------------------------------ACAGCAAC---AACAACAGCAGCGA---------------CGGCAACAGCAACA--G------------------------------CAACAA------------------------------------------------------------------------------------------------CAACAGCAGCGACGGTAACAGCAACAGC--A---------------------------------ACAACAACAGCAGCG---------------------------------ACGGCAACAGCAAC------------------AGCAACAACAACAGCAGC-GA---CGGCAACAGCAACAGCAA---------------------CAACAACAG------C--------------AG---------CGACGGCAA-------------------------CAGCAACAGCAACAAC----AACAGCAGC------GA---CGGAAACAGCAAC-------------------------------------A
droGri2 scaffold_15081:1195557-1195845 - CAGTAGCAGCAG---------------------------------------------------------CAAC---------TTTAAAACAACGATTAC----AAAT---------------------------------------------------------------------------------------------------------------------TGTAATAATTTAAATAGTAGTAATAGCTGTAGAAATAATGTTA---------------------------------------------GCGG---------------------------------------TAGA---------------------------TATAGTGATCGCAAGCAAAAGCCGAGCGAGCCAACAGCAGCAGCGACGGCAACGGCGACGACGGCATCGATAGCAACAACGTTAACGTTATCAAACATTGCGCAATGCACGCCGACGCCCTCGTCGTCT-----TAC-------TGC----TCGG-------------------------------CGGGCG--------------ACCAA---------CAGCAGCAACAACATCAA-------------CAGCAGCAGCT----------ACA--GGC------AA---CGGCAGCAGCAGC-------------------------------------G
droAna3 scaffold_13047:717681-717909 + CAGCAGCAACAG---------------------------------------------------------CAAC------------A-G----------------------------------------------------------------------------------CATC---AGCAACAGCAACTC---------------TACAACCAGCAATA--G------------------------------TAAAAA------------------------------------------------------------------------------------------------CCAAAGAG--------------------------------------------------------ACAACAGCAGCAGCGACAGCAGCAGCAACAGCAAGAGCAACAGCAACAGTAACAGTAACAAC------------------ATCGACGAA---------------------TTGCAACAGCAA---------------------CAA-ATCAATCCAAAAACCAGTGACAACCA------CATTACAACGACAACAGCCAC---CG-------------CATCA----------------TTGGAAGC------TG---CAACAACTGCAAT-------------------------------------A
droBip1 scf7180000392015:3910-4187 + CAGCAGCAACAG---------------------------------------------------------TCGC------------A-G----------------------------------------------------------------------------------CAGC---AATGGCAGCAACAC---------------AATA--------------T------------------------ACAATATAAAAAACAACAACAAGAACATTCACCACCACAACAACAACAACAACGA---------------------------------------------------CGACAACAATGTTGGTATTATCAACA--------------------------------------AGATCAACAAGAACAGCCACA---------------GCCGTTACAACA---------ACAAC------------------AGCAA----------------------------CAACAGCAACAACAACATTGGTGCCAACATCA---TGAA------C--------------ATCAA------CAGCAACAGCAGCCAC---CACCATTGGCACCATTAACAACAACAACAAA-----TCAACAAC------AT---TTACAATTGTTGC-------------------------------------A
droKik1 scf7180000302685:196339-196571 + CAGCAGCAACAA---------------------------------------------------------CAGC------------A-T----------------------------------------------------------------------------------TTAC---AGCAGCAGCAGCAG------CAGCATTTACAGCAGCAG--------------------------------------------------------------------------CAGCAACAGCATCTACAGCAGCAGCAGCAAC----------------------ATCACC-----------------------------AGCA--------------------------------------GCAACAACAACAGCATCTACAGCAGCAACAGCAGCAGCTGCAGCAACATCTACAGCAGCAAC------------------AGCAGCAGCAT----------------------------------------------------CA---TCTA------C--------------AGCAG------CAGCAGCATCTA----------------------CAGCAACAGCAGCATC----TACAGCAGC------AG---CAGCAGCAGCAGC-------------------------------------A
droFic1 scf7180000453438:39762-40009 - CAGCTGAGACAA---------------------------------------------------------CTGC------------A-A----------------------------------------------------------------------------------CAGCAACAACAACAGCTT---------------TTACTACAACGGCAACC--ACAGCAACAATCAGA-----------------------------------------------------------------------------------------A----------------------------CAATTGC---------TACTGCAGCTGG-----------------G------------------ACAACTACAGCAACA------------ACTGCAAAGGCTTTTACTGCA------ACAGCAGC------------------AGCAACAACAACGACGGC-GA---ACACAGCTGAGACAACTG---------------------CAACAGAAA------C--------------TGCGACAGCAACAGCAACAGCAACGGCTTTTA-------------CTGCACCAGCT----------GCAGCAGC------GA---AAACAACAACAAT-------------------------------------T
droEle1 scf7180000491023:317521-317738 - CAGCAGCAGCAA---------------------------------------------------------CAAC------------A-G----------------------------------------------------------------------------------CAAC---AGTAGCAGCAGCAA--------------------------------------------------------CAACAACACA------------------------------------------------------------TCCAATAGTGCGCAGCAGCAGCAGCAACACC--A--------------------------------------------------------------------ACACCATCAGCAGCAGCAGCAGCAGCAGCAGCATCACCAGCAGCAACG---------------------------------------AG-TTGT----------CGCCAGTAGCAA--CCAG---------------------CAACAACAA------T--------------TGCAACAGCAGCAGCAGCAGCAGCAGCAGCAA-------------CAGCAGCAGCA----------GCAGCAG------------CA---GCAGCAA-C-------------------------------------
droRho1 scf7180000779841:94335-94566 + CCACAGCGGAGC---------------------------------------------------------CTGA---------TATTGATGGCA------------------TG--------------------------------------------------TCGACAACAAC---ACATGCAGCAGCCA---------------TGGCAACAG-----------------------------CAACAACTACATAAAAAACAGCA---------------------------------------------GCAGCAAC----------------------TGTATC-----------AGG------------------A--------------------------------------GCAACAGCAGCAGCA---------------------------TCAACTGCAGCAACAGTACC------------------ATCAGCAACAGCATCAGCA--GT-----A------------------------------------------------CC--------AAAAACAA---CAGCAGCAGCAACACTAACAGCAACAC-------------CAACAGCAACACCAAA----AGCAGCAG------------CA---GCAACAG-C-------------------------------------
droBia1 scf7180000302113:2271442-2271692 + CATCAGCAACAG---------------------------------------------------------CAAC------------A-A----------------------------------------------------------------------------------CAAC---AACTGTAGCAGCAACAGCAGCAGCAACACCAA--------------------------------------CAACTGTAGGAG-------------------------------------------------------------------------------CAACATCA--GCAACAGCAACAAC--------------------------------------------------------------------AACAACTGTAGCAGCAACAGCAGCAGCGATATCAACAACTGTAGCAGCAAC------------------AGCAGCAGCGATAT----------CAACAACTGTAGCAGCAG---------------------CAGCAACAACCGAGGG--------------AG------------CAACAACAGCAACACTTG-CAG---------CGGCAACAGCAACAAC----TGCAGCAGC------TA---CAGCAGCAACAAC-------------------------------------A
droTak1 scf7180000415394:331777-332014 - CAGCAGCAACAC---------------------------------------------------------CAAT------------T-G----------------------------------------------------------------------------------CAAT---TGCAACAGCAACAA---C------------------------CAAGCGGCGACAGGCG-----------------------------------------------------------------------------------------GTAAACAGCAGCAGCGGCGGTA--GCAACAACAACAAC---------AAG-----------------CGCTGCAGTCGCA---------------GCAGCAGCAGCAGCAGCTGCAGTAGCAGCAGCAGCAGCAGCAGCAACGCTAGCGTCGGCAGC------------------GACGCCACCAGCATGTCCA--AAA-----------------------------------------------------CA--------AGCAGCGG---GCATCCCAAT-GCAGCAGCAACACAAG--------------------------------------CAG------------CA---GTAGCAG-C-------------------------------------
droEug1 scf7180000409881:168665-168884 + CAGCAGCAGAAA---------------------------------------------------------CAAG------------T-G----------------------------------------------------------------------------------CAGC---AACTGCATCAACCG-----------------------------------------------------CAACAGCAGCAGAAACAAGTGCA---------------------------------------------GCATCAAC------------------------------C-----------------------------------------------------------------------ACAGCAACAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACA------ACAAGTGC------------------AGCAATTGCATCAGCAAC-AA---GCGCAACAGCAGCAGCAG---------------------CAGCAACAA------G--------------TG---------CAACAGCAA------CAGCAA-------------CAGCAGCAGCAACAAG----TGCAACAG------------CA---GCAGCAA-C-------------------------------------
dm3 chrX:9164827-9165077 - CAGTACCAGGAA---------------------------------------------------------AAGC------------A-G----------------------------------------------------------------------------------AAGC---TAATGTTGCAGCAA-----------------------------------------------------------------------------------------------CAACAG---CAAC------------------------------------------------------------AGCAACAACAGCAGCAGCAACA--ACA------------ACAGCA---------------GCAACAACAGCAGCAGCTGCAACAACCACAGCAGCAGCAACAACAGCAGCAGCAACAACAGC------------------AGGAGCAACAGCAACTGCA--ATT-----------------------------------------------------GA--------AGCCACAT---CATCTGCAGCAACTTCAACTTCAACTG-------------TTGCAG----------------------------------CA---GCAGCAA-AAGAAGGCCCAAATACCACAGAAAACTCAAATTATATA
droSim2 3l:16435398-16435622 + CAGCAGCAAACA---------------------------------------------------------CAAA------------A-T----------------------------------------------------------------------------------CAAC---AGCAGCAGCAAACA---------------CAAAATCAACAACG--G------------------------------CAG---------------------------------CAG---------------------------------------------------------------CAACAGCAACGTCTGCAGCAGCAACATG--A---------------------------------AAACCAGCAGCAACGCTTGCAGCAGCAGCAGAAGCACCAGCAGCAACGTCTAC-------------------------------------------------------AACAGCAACACCAG---------------------CAGCAACGT------G--------------TGCAA------CAGCAACGTATGCAACAACAG-------------CAGCA----------------GCAGCAGCAGAATCAACAGCAAT-ACAACAA-C-------------------------------------
droSec2 scaffold_0:16628908-16629175 - CAGCAGCAACAA---------------------------------------------------------GAAC---------CAGAAAACG---AACATCTC-ACATATCGATATCAGCAATCAAAGCCCACACATATGCAGCAATTAGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAACTATCAGCCACGACATT----CCACAACCACG------TCGTCGCC---CTCA--TCC--ACACATTCGCTGGCCA---------------GCGGCGGCGGCAGCAGCAGTAGCATCAGCAACAGCAGCAGCAGCGACA------------------------------------------GCAACATAA--GC-----AA---------------------------------CA-----------------------TAAGCAA---CAT---CAGCAACATCAGCAACATCGG-------------CAACA----------------TCAGCAAC------AG---CAATCATAGCAAC-------------------------------------G
droYak3 X:17757119-17757375 - CAGAAGCGACGC---------------------------------------------------------CAGGCTCACCAGCAACA--------GATGC----AGGC--------------------------------------------------------------------------GCAGCAAAAG--------------------------------CAGTACCAGGAGAA---------------GCAGAAGCTAATGCA---------GCAACAA---CAACAG---CAGC------------------------------------------------------------AGCAACAACAGCAGCAGCAACA--ACA---------------------------------ACAGCAGCAGCAACAACAGCAGCTGCAGCAGCAACTGCAGCAGCAAC---------------------------------AA----------------------CAGCAACTGCAGCAGCAA---------------------CAGCAACAACAAATGC--------------TG---------CAACAGCAACAGCAAC---TG-------------CAGCA---GCA----------ACAGCAGC------CG---CA---GCAGCAG-A------------------------------TAGTCCA
droEre2 scaffold_4770:14415191-14415435 - AGACAAGGAGCA---------------------------------------------------------CGAG--------CGAGAGAAGGCG-AAGGA--GAA----------------------------------------AGCAAACGAAGAGGA------------------------------------------------GGC--------------------------------------------------------------------------------------------------------------------------CGAGTCCGACGATT--CCGACGACGACG------TCGTGGTTGTGCTCG--------AAGGCTGCGAAGGCA---------------ACGCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACGCCAGCAGCAACAAC-------------------------------------------------------------------------------------------CAA-AA--------GGCCGCGG---CCACGACGACGACGA-------------------------CGGCGACGACGGCGAACCTTTGTAATCGC------AG---TGGCGGCAGCAGC-------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CAGCAGCGAGAC---------------------------------------------------------GAGC---------CAAAAACATACGAATAT----AGATATCAATTTGGGCAGTCAA--------CATAAGAGGGAAACAAATGATAATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAC---------------------------AATAAAATTGATAAATCG---------------ACGCCGACGGCAGCGCCTGTAGCAGCGACAGCAGCAGCGACAGCGACACTTGAAATCATAAC------------------TCCGTCAAATGTATGTGCA--AAC-----------------------------------------------------GG--------AAACACGA---CCGTCACGACGACATCAGCATCCCCTC-------------CAGCATCAGCAGCAAA----TACAAAAGC------GA---CGACGACTGTTTC-------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA----TACAAAAGC------GA---CGACGACT...........................................2311.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCCTC-------------CAGCATCAGCAG...............................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCTC-------------CAGCATCAGCAGCAAA----TACA...................................................................2711.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGCAGCAGCGACAGCG........................................................................................................................................................................................................................................................................2021.0020000000020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCA--AAC-----------------------------------------------------GG--------AAACACGA---CCGTC..............................................................................................................................2411.0010000001000
.............................................................................................................CAATTTGGGCAGTCAA--------CATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
..GCAGCGAGAC---------------------------------------------------------GAGC---------CAAAAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGACAGCAGCAGCGACAGC.........................................................................................................................................................................................................................................................................2440.2510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGCAGCAGCGACAGC.........................................................................................................................................................................................................................................................................1970.1410100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCGACAGCGAC......................................................................................................................................................................................................................................................................19180.0610100000000
droPer2
CAGCAGCGAGAC---------------------------------------------------------GAGC---------CAAAAACATACGAATAT----AGATATCAATTTGGGCAGGCAA--------CATAAGAGGGAAACAAATGATAATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAC---------------------------AATAAAATTGATAAATCG---------------ACGCCGACGGCAGCGCCTGTAGCAGCGACAGCAGCAGCGACAGCGACACTTGAAATCATAAC------------------TCCGTCAAATGTATGTGCA--AAC-----------------------------------------------------GG--------AAACACGA---CCGTCACGACGACATCAGCATCCCCTC-------------CAGCATCAGCAGCAAA----AACAAAAGC------GA---CGACGACTGTTTC-------------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACGGCAGCGCCTGTAGC..............................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................AAATCG---------------ACGCCGACGGCAGCGCCTGTA................................................................................................................................................................................................................................................................................................2711.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAGC------GA---CGACGAC............................................1811.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCGACGGCAGCGCCTGT.................................................................................................................................................................................................................................................................................................2011.001000010
...............................................................................................ATAT----AGATATCAATTTGGGCAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAA----AACAAAAGC------GA---CGACGACTG..........................................2611.001010000
................................................................................................................................................AACAAATGATAATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAC---------------------------A.....................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................AATCG---------------ACGCCGACGGCAGCGCCTGTAGC..............................................................................................................................................................................................................................................................................................2811.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA--AAC-----------------------------------------------------GG--------AAACACGA---CCGT...............................................................................................................................2011.001000010
droWil2
TACCAACAAGAC---------------------------------------------------------GAGC---------TAGAAATGGCCAGGGAA----AG----------------------------------------GCTGGCAGAGGCAGTGAAGCAACAGCAAC---TGCAGCAGCAACAA---CAACAGCAGCAACAACAACAGCAGCA--G-------------------------------------------------------------------------------------------------------------------CAACAACA--GCAACAGCAACAAC---------AAC-----------------------------------------------AGCAGCAGCAACA---------------------------ACAACAGCAGCAACAACAAC------------------AGCAGCAGCAGCAACAGCA--GC-----A------------------------------------------------AC--------AGCAACAA---CAGCAGCAGCAACAGCAACAGCAACAA-------------CAGCAGCAACAACAAC----TGCAGCAGC------AA---CAACAACAGCAGC-------------------------------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................GTGAAGCAACAGCAAC---TGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAAC------------------AGCA.................................................................................................................................................................................................................................18200.15300030
.......................................................................................................................................................................................................GCAGCAACAACAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.15300030
................................................................................................................................................................................................................ACAACAGCAGCA--G-------------------------------------------------------------------------------------------------------------------CAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................20200.10200002
....................................................................................................................................................................................................................CAGCAGCA--G-------------------------------------------------------------------------------------------------------------------CAACAACA--GCA.........................................................................................................................................................................................................................................................................................................................................................................................20200.10202000
.........................................................................................................................................................................................................................................................................................................................................................A--GCAACAGCAACAAC---------AAC-----------------------------------------------AGCAGCA............................................................................................................................................................................................................................................................................................................25200.10202000
........................................................................................................................................................................................GCAACAA---CAACAGCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
........................................................................................................................................................................................................................................................................................................................................................................AC---------AAC-----------------------------------------------AGCAGCAGCAACA---------------------------AC.........................................................................................................................................................................................................................................................................20200.10200002
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAACAA-------------CAGCAGCA...................................................................................28100.10101000
.................................................................................................................................................................................TGCAGCAGCAACAA---CAACAGCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28140.07100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC----TGCAGCAGC------AA---CAACAACA...........................................25150.07101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA--GC-----A------------------------------------------------AC--------AGCAACAA---CAG................................................................................................................................24190.05100010
......................................................................................................................................................................................................................................................................................................................................................................CAAC---------AAC-----------------------------------------------AGCAGCAGCAACA---------------------------ACA........................................................................................................................................................................................................................................................................23200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC------------------AGCAGCAGC............................................................................................................................................................................................................................19200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAAC------------------AGCAGCAGCAGCA........................................................................................................................................................................................................................24200.05100010
..................................................................................................................................................................................................................AACAGCAGCA--G-------------------------------------------------------------------------------------------------------------------CAACAACA--GCAACA......................................................................................................................................................................................................................................................................................................................................................................................25200.05100100
.....................................................................................................................................................................................................................................................................................................................................................................ACAAC---------AAC-----------------------------------------------AGCAGCAGCAA........................................................................................................................................................................................................................................................................................................19200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--GC-----A------------------------------------------------AC--------AGCAACAA---CAGCAGCAGCAA.......................................................................................................................27200.05101000
....................................................................................................................................................................................................ACAGCAGCAACAACAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------AC--------AGCAACAA---CAGCAGCAGCAA.......................................................................................................................23200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAAC----TGCAGCAGC------AA---C..................................................21200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--GC-----A------------------------------------------------AC--------AGCAACAA---CAGCAGCAGC.........................................................................................................................25200.05100010
............................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAAC---------AAC-----------------------------------------------AGC................................................................................................................................................................................................................................................................................................................20200.05101000
..........................................................................................................................................................................................AACAA---CAACAGCAGCAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..................................................................................................................................................................................................CAACAGCAGCAACAACAACAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAGCAGCAGCAACAGCA..................................................................................................................19200.05100001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------AC--------AGCAACAA---CAGCAGCAGCAACA.....................................................................................................................25200.05100010
.............................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAAC---------AAC-----------------------------------------------AGCA...............................................................................................................................................................................................................................................................................................................20200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA-------------CAGCAGCAACAACAAC----.......................................................................22200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAACAACAAC------------------AGCA.................................................................................................................................................................................................................................21200.05100001
..............................................................................................................................................................................................................................................................................................................................................................AACAGCAACAAC---------AAC-----------------------------------------------AGCAGCAGCA.........................................................................................................................................................................................................................................................................................................25200.05100010
......................................................................................................................................................................................................AGCAGCAACAACAACAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAAC------------------AGCAG................................................................................................................................................................................................................................20200.05100010
...............................................................................................................................................................................................................AACAACAGCAGCA--G-------------------------------------------------------------------------------------------------------------------CAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................21200.05100100
....................................................................................................................................................................................................................................................................................................................................................................AACAAC---------AAC-----------------------------------------------AGCAGCAGCAA........................................................................................................................................................................................................................................................................................................20200.05100001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------AGCAGCAGCAGCAACAGCA--................................................................................................................................................................................................................20200.05100010
...............................................................................................................................................................................................................AACAACAGCAGCA--G-------------------------------------------------------------------------------------------------------------------CAACAA................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................ACAAC---------AAC-----------------------------------------------AGCAGCAGCAACA---------------------------...........................................................................................................................................................................................................................................................................21200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAA-------------CAGCAGCAACA................................................................................23200.05100010
..............................................................................................................................................................................................................................................................................................................................................................AACAGCAACAAC---------AAC-----------------------------------------------AGCAGCA............................................................................................................................................................................................................................................................................................................22200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--------AGCAACAA---CAGCAGCAG..........................................................................................................................19200.05100010
droVir3
CAGCAGCGACGC---------------------------------------------------------CAAA------------G-AAAGAG-GCGCA--CAA----------------------------------------AGCAAACAAAA-----------------------ATTACATAA-----------------------AA--------------------------------CAACAGCAAAAAAAAAAAACGAG---------------------------------------------GCA--AAC-----------------------------------------------------------------------------------A---------------ACAGCGCGAGCAGCGGCGGCAGCAGCAGCAGCAGCAGCGGCAGCAAAACCAAAAAGCGAATC------------------TAAATTAAAATCGT---------------------------------------------------------------AAATCAACGCAAATCACA---CAGCGACAGCGACAGCAGCGGCACCGG-------------CAGCGGCAGCGGCAA----------AAG------------AA---GAAGCAG-C-------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT---------------------------------------------------------------AAATCAACGCAAATCACA---CAGC...............................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAACCAAAAAGCGAATC------------------.....................................................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGCGACAGCAGCGGC.............................................................................................................1930.331000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCGGC............................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCGGCA...........................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCGGCA...........................................................................................................................................................................................................................................................................19200.051000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCAGCAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCGGCA...........................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGCGGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAACAATGAGCCGCAGCATTTCTACATGTGTAAAACTAAAGACTCAGCTCTGTGAATATAAGAGCTGAACAGC------------A-AAAGCA-------------------------------------------------------------------------ACAGCAAC---AACAACAGCAGCGA---------------CGGCAACAGCAACA--G------------------------------CAACAA------------------------------------------------------------------------------------------------CAACAGCAGCGACGGTAACAGCAACAGC--A---------------------------------ACAACAACAGCAGCG---------------------------------ACGGCAACAGCAAC------------------AGCAACAACAACAGCAGC-GA---CGGCAACAGCAACAGCAA---------------------CAACAACAG------C--------------AG---------CGACGGCAA-------------------------CAGCAACAGCAACAAC----AACAGCAGC------GA---CGGAAACAGCAAC-------------------------------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................CAGCAACA--G------------------------------CAACAA------------------------------------------------------------------------------------------------CAACAGCAG............................................................................................................................................................................................................................................................................................................................................................................24200.051000010
.....................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGC--A---------------------------------ACAACAACAGCAG........................................................................................................................................................................................................................................................................................................24200.051000010
.......................................................................GC------------A-AAAGCA-------------------------------------------------------------------------ACAGCAAC---AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC------------------AGCAACAACAACAGCAG....................................................................................................................................................................................................................24200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAACAAC----AACAGCAG...............................................................24200.051000010
....................................................................................................................................................................................................................CAGCAACA--G------------------------------CAACAA------------------------------------------------------------------------------------------------CAACAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAA---------------------CAACAACAG------C--------------AG---------.............................................................................................................................24200.051000010
droGri2
CAGTAGCAGCAG---------------------------------------------------------CAAC---------TTTAAAACAACGATTAC----AAAT---------------------------------------------------------------------------------------------------------------------TGTAATAATTTAAATAGTAGTAATAGCTGTAGAAATAATGTTA---------------------------------------------GCGG---------------------------------------TAGA---------------------------TATAGTGATCGCAAGCAAAAGCCGAGCGAGCCAACAGCAGCAGCGACGGCAACGGCGACGACGGCATCGATAGCAACAACGTTAACGTTATCAAACATTGCGCAATGCACGCCGACGCCCTCGTCGTCT-----TAC-------TGC----TCGG-------------------------------CGGGCG--------------ACCAA---------CAGCAGCAACAACATCAA-------------CAGCAGCAGCT----------ACA--GGC------AA---CGGCAGCAGCAGC-------------------------------------GSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-------------CAGCAGCAGCT----------ACA--GGC------A.......................................................2111.00110
..................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCCGAGCGAGCCAACA..................................................................................................................................................................................................................................................................................................................2011.00101
.......................................................................................................................................................................................................................................ATTTAAATAGTAGTAATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACATCAA-------------CAGCAGCAGC.................................................................................24110.09110
droAna3
CAGCAGCAACAG---------------------------------------------------------CAAC------------A-G----------------------------------------------------------------------------------CATC---AGCAACAGCAACTC---------------TACAACCAGCAATA--G------------------------------TAAAAA------------------------------------------------------------------------------------------------CCAAAGAG--------------------------------------------------------ACAACAGCAGCAGCGACAGCAGCAGCAACAGCAAGAGCAACAGCAACAGTAACAGTAACAAC------------------ATCGACGAA---------------------TTGCAACAGCAA---------------------CAA-ATCAATCCAAAAACCAGTGACAACCA------CATTACAACGACAACAGCCAC---CG-------------CATCA----------------TTGGAAGC------TG---CAACAACTGCAAT-------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................AAAAA------------------------------------------------------------------------------------------------CCAAAGAG--------------------------------------------------------ACAAC................................................................................................................................................................................................................................................................................................................1811.001010000
.......................................................................................................................................................................................................................................................................................................................................................................AGAG--------------------------------------------------------ACAACAGCAGCAGCGA.....................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
CAGCAGCAACAG---------------------------------------------------------TCGC------------A-G----------------------------------------------------------------------------------CAGC---AATGGCAGCAACAC---------------AATA--------------T------------------------ACAATATAAAAAACAACAACAAGAACATTCACCACCACAACAACAACAACAACGA---------------------------------------------------CGACAACAATGTTGGTATTATCAACA--------------------------------------AGATCAACAAGAACAGCCACA---------------GCCGTTACAACA---------ACAAC------------------AGCAA----------------------------CAACAGCAACAACAACATTGGTGCCAACATCA---TGAA------C--------------ATCAA------CAGCAACAGCAGCCAC---CACCATTGGCACCATTAACAACAACAACAAA-----TCAACAAC------AT---TTACAATTGTTGC-------------------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
CAGCAGCAACAA---------------------------------------------------------CAGC------------A-T----------------------------------------------------------------------------------TTAC---AGCAGCAGCAGCAG------CAGCATTTACAGCAGCAG--------------------------------------------------------------------------CAGCAACAGCATCTACAGCAGCAGCAGCAAC----------------------ATCACC-----------------------------AGCA--------------------------------------GCAACAACAACAGCATCTACAGCAGCAACAGCAGCAGCTGCAGCAACATCTACAGCAGCAAC------------------AGCAGCAGCAT----------------------------------------------------CA---TCTA------C--------------AGCAG------CAGCAGCATCTA----------------------CAGCAACAGCAGCATC----TACAGCAGC------AG---CAGCAGCAGCAGC-------------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
CAGCTGAGACAA---------------------------------------------------------CTGC------------A-A----------------------------------------------------------------------------------CAGCAACAACAACAGCTT---------------TTACTACAACGGCAACC--ACAGCAACAATCAGA-----------------------------------------------------------------------------------------A----------------------------CAATTGC---------TACTGCAGCTGG-----------------G------------------ACAACTACAGCAACA------------ACTGCAAAGGCTTTTACTGCA------ACAGCAGC------------------AGCAACAACAACGACGGC-GA---ACACAGCTGAGACAACTG---------------------CAACAGAAA------C--------------TGCGACAGCAACAGCAACAGCAACGGCTTTTA-------------CTGCACCAGCT----------GCAGCAGC------GA---AAACAACAACAAT-------------------------------------TSizeHit CountTotal NormTotal
No Reads
droEle1
CAGCAGCAGCAA---------------------------------------------------------CAAC------------A-G----------------------------------------------------------------------------------CAAC---AGTAGCAGCAGCAA--------------------------------------------------------CAACAACACA------------------------------------------------------------TCCAATAGTGCGCAGCAGCAGCAGCAACACC--A--------------------------------------------------------------------ACACCATCAGCAGCAGCAGCAGCAGCAGCAGCATCACCAGCAGCAACG---------------------------------------AG-TTGT----------CGCCAGTAGCAA--CCAG---------------------CAACAACAA------T--------------TGCAACAGCAGCAGCAGCAGCAGCAGCAGCAA-------------CAGCAGCAGCA----------GCAGCAG------------CA---GCAGCAA-C-------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CCACAGCGGAGC---------------------------------------------------------CTGA---------TATTGATGGCA------------------TG--------------------------------------------------TCGACAACAAC---ACATGCAGCAGCCA---------------TGGCAACAG-----------------------------CAACAACTACATAAAAAACAGCA---------------------------------------------GCAGCAAC----------------------TGTATC-----------AGG------------------A--------------------------------------GCAACAGCAGCAGCA---------------------------TCAACTGCAGCAACAGTACC------------------ATCAGCAACAGCATCAGCA--GT-----A------------------------------------------------CC--------AAAAACAA---CAGCAGCAGCAACACTAACAGCAACAC-------------CAACAGCAACACCAAA----AGCAGCAG------------CA---GCAACAG-C-------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CATCAGCAACAG---------------------------------------------------------CAAC------------A-A----------------------------------------------------------------------------------CAAC---AACTGTAGCAGCAACAGCAGCAGCAACACCAA--------------------------------------CAACTGTAGGAG-------------------------------------------------------------------------------CAACATCA--GCAACAGCAACAAC--------------------------------------------------------------------AACAACTGTAGCAGCAACAGCAGCAGCGATATCAACAACTGTAGCAGCAAC------------------AGCAGCAGCGATAT----------CAACAACTGTAGCAGCAG---------------------CAGCAACAACCGAGGG--------------AG------------CAACAACAGCAACACTTG-CAG---------CGGCAACAGCAACAAC----TGCAGCAGC------TA---CAGCAGCAACAAC-------------------------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
CAGCAGCAACAC---------------------------------------------------------CAAT------------T-G----------------------------------------------------------------------------------CAAT---TGCAACAGCAACAA---C------------------------CAAGCGGCGACAGGCG-----------------------------------------------------------------------------------------GTAAACAGCAGCAGCGGCGGTA--GCAACAACAACAAC---------AAG-----------------CGCTGCAGTCGCA---------------GCAGCAGCAGCAGCAGCTGCAGTAGCAGCAGCAGCAGCAGCAGCAACGCTAGCGTCGGCAGC------------------GACGCCACCAGCATGTCCA--AAA-----------------------------------------------------CA--------AGCAGCGG---GCATCCCAAT-GCAGCAGCAACACAAG--------------------------------------CAG------------CA---GTAGCAG-C-------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAGCAGCAGAAA---------------------------------------------------------CAAG------------T-G----------------------------------------------------------------------------------CAGC---AACTGCATCAACCG-----------------------------------------------------CAACAGCAGCAGAAACAAGTGCA---------------------------------------------GCATCAAC------------------------------C-----------------------------------------------------------------------ACAGCAACAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACA------ACAAGTGC------------------AGCAATTGCATCAGCAAC-AA---GCGCAACAGCAGCAGCAG---------------------CAGCAACAA------G--------------TG---------CAACAGCAA------CAGCAA-------------CAGCAGCAGCAACAAG----TGCAACAG------------CA---GCAGCAA-C-------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CAGTACCAGGAA---------------------------------------------------------AAGC------------A-G----------------------------------------------------------------------------------AAGC---TAATGTTGCAGCAA-----------------------------------------------------------------------------------------------CAACAG---CAAC------------------------------------------------------------AGCAACAACAGCAGCAGCAACA--ACA------------ACAGCA---------------GCAACAACAGCAGCAGCTGCAACAACCACAGCAGCAGCAACAACAGCAGCAGCAACAACAGC------------------AGGAGCAACAGCAACTGCA--ATT-----------------------------------------------------GA--------AGCCACAT---CATCTGCAGCAACTTCAACTTCAACTG-------------TTGCAG----------------------------------CA---GCAGCAA-AAGAAGGCCCAAATACCACAGAAAACTCAAATTATATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAACCACAGCAGCAGC...............................................................................................................................................................................................................................................................................21224.004800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000471000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCTGCAACAACCACAG......................................................................................................................................................................................................................................................................................21421.258500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000840000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCACAGCAGCAGCAACA...........................................................................................................................................................................................................................................................................21313.674100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000392000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGCAGCAGCAACAACA........................................................................................................................................................................................................................................................................21311.003300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAGCAGCAGCAACAAC.........................................................................................................................................................................................................................................................................21211.002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACAGCAGCAGCAACAA..........................................................................................................................................................................................................................................................................2128.501700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000170000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACCACAGCAGCAG................................................................................................................................................................................................................................................................................1945.502200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCACAGCAGCAGCAAC............................................................................................................................................................................................................................................................................2125.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAACCACAGCAGCAG................................................................................................................................................................................................................................................................................2024.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCACAGCAGCAGCAA.............................................................................................................................................................................................................................................................................2124.5090000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACCACAGCAGCAGCA..............................................................................................................................................................................................................................................................................2134.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACCACAGCAGCAGC...............................................................................................................................................................................................................................................................................2043.751500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCTGCAACAACCACAGC.....................................................................................................................................................................................................................................................................................2142.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000091000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAACCACAGCAGCA.................................................................................................................................................................................................................................................................................1922.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAG----------------------------------CA---GCAGCAA-AAGAAGGCCCAAA.........................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA-AAGAAGGCCCAAATACC.....................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAACAACAGCAGCAGCTGCAACAAC...........................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAACAACCACAGCAGCAG................................................................................................................................................................................................................................................................................2122.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAGC------------------AGGAGCAAC............................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCACAGCAGCAGCAACAA..........................................................................................................................................................................................................................................................................2222.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGC------------------AGGAGCAACA...........................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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Head		M024
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droYak3
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Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCTGCAGC........................................................................................................................................................................................................................................................................................1920.50101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC---TG-------------CAGCA---GCA----------ACAGCAGC------........................................................2460.17101000000000
..........................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACA--ACA---------------------------------ACAG.................................................................................................................................................................................................................................................................................................................26130.08101000000000
...........................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAACA--ACA---------------------------------ACAG.................................................................................................................................................................................................................................................................................................................25130.08101000000000
...........................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAACA--ACA---------------------------------ACAGC................................................................................................................................................................................................................................................................................................................26130.08100100000000
.............................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACA--ACA---------------------------------ACAGCA...............................................................................................................................................................................................................................................................................................................25200.05101000000000
...............................................................................................................................................................................................................................................................................................AACAG---CAGC------------------------------------------------------------AGCAACAACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA--ACA---------------------------------ACAGCAGCAGCAAC.......................................................................................................................................................................................................................................................................................................26200.05100010000000
.................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------ACAGCAGCAGCAACAACAGCAGC..............................................................................................................................................................................................................................................................................................24200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAAC---------------------------------AA----------------------CAGCA........................................................................................................................................................................................................19200.05101000000000
...............................................................................................................................................................................................................................................................................................AACAG---CAGC------------------------------------------------------------AGCAACAACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACA--ACA---------------------------------ACAGCA...............................................................................................................................................................................................................................................................................................................26200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AACA--ACA---------------------------------ACAGCAGCAGCAACAACA...................................................................................................................................................................................................................................................................................................25200.05101000000000
......................................................................................................................................................................................................................................................................................AACAA---CAACAG---CAGC------------------------------------------------------------AGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
droEre2
AGACAAGGAGCA---------------------------------------------------------CGAG--------CGAGAGAAGGCG-AAGGA--GAA----------------------------------------AGCAAACGAAGAGGA------------------------------------------------GGC--------------------------------------------------------------------------------------------------------------------------CGAGTCCGACGATT--CCGACGACGACG------TCGTGGTTGTGCTCG--------AAGGCTGCGAAGGCA---------------ACGCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACGCCAGCAGCAACAAC-------------------------------------------------------------------------------------------CAA-AA--------GGCCGCGG---CCACGACGACGACGA-------------------------CGGCGACGACGGCGAACCTTTGTAATCGC------AG---TGGCGGCAGCAGC-------------------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCAGCAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................................2390.1110100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAGCAGC..................................................................................................................................................................................................................................................................................19200.0510100000

Generated: 05/17/2015 at 10:04 PM