ID:

dps_2802

 Coordinate:

XL_group1e:11390429-11390579 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.6 -26.5 -26.3

Flybase annnotation

exon [dpse_GLEANR_74:4]; CDS [Dpse\GA28060-cds]; intron [Dpse\GA28060-in]

No Repeatable elements found

mature
  1. Unknown_group_132:17088-17107 -
  2. XL_group1e:9513269-9513288 -
  3. dps_2802  XL_group1e:11390476-11390495 -
  4. XL_group3a:1394529-1394548 -
  5. XR_group6:2307673-2307692 +
  6. XL_group1a:16709-16728 +
  7. XL_group1a:244855-244874 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAAGCGGAGCAGCGACTACTTTCTACTTGGATCACCCGATAGTGGTGAGGGTATGTGCTTCCTCTCACAATAATCTTTAAAACGGTTTTTATAGCCGGTACTAGAAGAGTATACATAGGTGGATATTAGATTTCTGGTGAAAGTGGATGTGTGCAGCACCCAGAAGAAATCGTTTTTCTCAATCACTCTCTATGAATCTGATTAAAAATCGAGTATTTTTGTATGCACTTAAACATTAACCTGAATTCTTT
**************************************************.........((((((....(((.(((((....(((((.....)))))......))))).)))....))).)))..((((((((.(((.((..((((..((((...))))..(((((((....)))))))...)))))).))).))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M059
embryo
 M040
female body
 GSM343916
embryo
 V112
male body
......................................................................................................................................TGGTGAAAGTGGATGTGTGC................................................................................................. 20 0 7 0.14 1 1 0 0 0
.....................................................................................................................................................................................................................TATTTTTGTATGTACTTACA.................. 20 2 20 0.05 1 0 0 1 0
......................................................................................................................................TGGTGAAAGTAGATGTGTGC................................................................................................. 20 1 20 0.05 1 1 0 0 0
..........................................................................CTTTAAAATAGTTGTTATAG............................................................................................................................................................. 20 3 20 0.05 1 0 1 0 0
......................................................................................................................................TGGTGAAAGTGGATGTGTG.................................................................................................. 19 0 20 0.05 1 0 0 0 1

Anti-sense strand reads

CTTCGCCTCGTCGCTGATGAAAGATGAACCTAGTGGGCTATCACCACTCCCATACACGAAGGAGAGTGTTATTAGAAATTTTGCCAAAAATATCGGCCATGATCTTCTCATATGTATCCACCTATAATCTAAAGACCACTTTCACCTACACACGTCGTGGGTCTTCTTTAGCAAAAAGAGTTAGTGAGAGATACTTAGACTAATTTTTAGCTCATAAAAACATACGTGAATTTGTAATTGGACTTAAGAAA
**************************************************.........((((((....(((.(((((....(((((.....)))))......))))).)))....))).)))..((((((((.(((.((..((((..((((...))))..(((((((....)))))))...)))))).))).))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
......................GGTGAACCTCGTGGGCTA................................................................................................................................................................................................................... 18 2 14 0.21 3 3 0
..........CCGCTCATGAAAGCTGAACC............................................................................................................................................................................................................................. 20 3 6 0.17 1 1 0
..........TTGCTGAAGAAAGCTGAACC............................................................................................................................................................................................................................. 20 3 10 0.10 1 1 0
.............................................................................................................................................................................AAAAGGGTTAGTGAGAGC............................................................ 18 2 13 0.08 1 0 1
.......................................................................................................................................................................TTAGCAATAAGAGTTAGTTG................................................................ 20 3 15 0.07 1 1 0
........................................................................TAGCATTTTTACCAAAAATAT.............................................................................................................................................................. 21 3 15 0.07 1 0 1
................CTGAAAGAACAACCTAGTG........................................................................................................................................................................................................................ 19 3 16 0.06 1 1 0
..........................................................................GCAGTTTTGCCGAAAATAT.............................................................................................................................................................. 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:11390379-11390629 - dps_2802 GAAGCGGAGCAGCGACTACTTTCTACTTGGATCACCCGATAGTGGTGAGGGTATGTGCTTCCTCTCACAATAATCTTTAAAACGGTTTTTATAGCCGGTACTAGAAGAGTATACATAGGTGGATATTAGATTTCTGGTGAAAGTGGATGTGTGCAGCACCCAGAAGAAATCGTTTTTCTCAATCACTCTCTATGAATCTGATTAAAAATCGAGTATTTTTGTATGCACTTAAACATTAACCTGAATTCTTT
droPer2 scaffold_14:838983-839130 - GAAGCGGATCAGCGACTACTTTCTGCTTGGATCACCCGATAGTGGCGAGGGTAAGTGCTTCCTCTCACAATAATCTTTAAAACGGCTTA-------------------------------------TAGATTTCTGGTGAAAGTGATTGTGTGCAGCACCCAGAAGAAAGCGTTTTTCTTGATCA------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GAAGCGGAGCAGCGACTACTTTCTACTTGGATCACCCGATAGTGGTGAGGGTATGTGCTTCCTCTCACAATAATCTTTAAAACGGTTTTTATAGCCGGTACTAGAAGAGTATACATAGGTGGATATTAGATTTCTGGTGAAAGTGGATGTGTGCAGCACCCAGAAGAAATCGTTTTTCTCAATCACTCTCTATGAATCTGATTAAAAATCGAGTATTTTTGTATGCACTTAAACATTAACCTGAATTCTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................TGGTGAAAGTGGATGTGTGC.................................................................................................2070.1410010000000
......................................................................................................................................TGGTGAAAGTGGATGTGTG..................................................................................................19200.0510000001000
droPer2
GAAGCGGATCAGCGACTACTTTCTGCTTGGATCACCCGATAGTGGCGAGGGTAAGTGCTTCCTCTCACAATAATCTTTAAAACGGCTTA-------------------------------------TAGATTTCTGGTGAAAGTGATTGTGTGCAGCACCCAGAAGAAAGCGTTTTTCTTGATCA------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 05:30 AM