ID:

dps_2801

 Coordinate:

XL_group1e:11284895-11284948 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dpse_GLEANR_1310:2]; CDS [Dpse\GA23776-cds]; CDS [Dpse\GA23776-cds]; exon [dpse_GLEANR_1310:3]; intron [Dpse\GA23776-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------##################################################
CTATTTGCGAATCCGGTTCCATTAAGAACAACTGTGCAGAGATTAACCAGGTAAAAAGTGTCCTGAAGTAGCCTGAAATCCCATCTAATGCACTTCTCTGACAGGGCATCGAGGCCTTCACGAAGCTTGTTCAAGCCGCCCAATCCAAATTCTG
**************************************************........((((..(((((.((..((.......))....)))))))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
.................................................................................................................GCCTTCACGAAGCTTGTTCAAG................... 22 0 1 2.00 2 2
...............GTGCCATTAAGAACAACTT........................................................................................................................ 19 2 6 1.17 7 7
..................CCATTAAGAACAACTGTGCAGA.................................................................................................................. 22 0 1 1.00 1 1
.TATGTGCGAATCCGGTTCCATTAAG................................................................................................................................ 25 1 1 1.00 1 1
................TTCCATTAAGAACAACTGTGCAGA.................................................................................................................. 24 0 1 1.00 1 1
...........................................................................................................................AGCTTGTTCAAGCCGCCCA............ 19 0 1 1.00 1 1
.....................................................................................................CAGGGCAACGCGGCCTTCACT................................ 21 3 2 0.50 1 1
..............GGTGCCATTAAGAACAACTT........................................................................................................................ 20 2 3 0.33 1 1
.................................................................................................GTGACAGGGTATCGAGCCC...................................... 19 3 9 0.11 1 1

Anti-sense strand reads

GATAAACGCTTAGGCCAAGGTAATTCTTGTTGACACGTCTCTAATTGGTCCATTTTTCACAGGACTTCATCGGACTTTAGGGTAGATTACGTGAAGAGACTGTCCCGTAGCTCCGGAAGTGCTTCGAACAAGTTCGGCGGGTTAGGTTTAAGAC
**************************************************........((((..(((((.((..((.......))....)))))))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 GSM343916
embryo
 V112
male body		 M059
embryo
.................................................................................................................................AATTTCGGCGGGTTAAGT....... 18 2 2 0.50 1 1 0 0 0 0
....................................................................................................CGTCCCGTTGCGCCGGAAGTG................................. 21 3 7 0.14 1 0 1 0 0 0
...............................................................................................................TCGGTAAATGCTTCGAACAA....................... 20 3 7 0.14 1 0 0 1 0 0
...................................................................................................................................GTTCGTCGGGTTAGGTCT..... 18 2 11 0.09 1 0 1 0 0 0
......................................................................................................................................CGGCGGGTTCGGTTTGAG.. 18 2 11 0.09 1 0 0 0 1 0
......................................................................................................................................CGGCGGGGTCGGTTTGAGAC 20 3 14 0.07 1 0 1 0 0 0
.................................................................................................................................ATGTTCGGCGGGGTCGGTTT..... 20 3 18 0.06 1 0 1 0 0 0
.................................................................GTCTTAGGACTTTAGGGTA...................................................................... 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:11284845-11284998 + dps_2801 CTATTTGCGAATCCGGTTCCATTAAGAACAACTGTGCAGAGATTAACCAGGTAAAAAGTGTCCTGAAGTAGCCTGAA----ATCCCATCTAATGCACTTCTCTGACAGGGCATCGAGGCCTTCACGAAGCTTGTTCAAGCCGCCCAATCCAAATTCTG
droPer2 scaffold_14:727280-727437 + CTATGTGCGAATCCGGTTCCATTAAGAACAACTGTGCAGAGATTAACCAGGTAAAAAGTGTCCTGAAGTAGCCTGAATTTAATCCCATCTAATGCACTTCTCTGACAGGGCATCGAGGCCTTCACGAAGCTTGTTCAAGCCGCCCAATCCAAATTCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CTATTTGCGAATCCGGTTCCATTAAGAACAACTGTGCAGAGATTAACCAGGTAAAAAGTGTCCTGAAGTAGCCTGAA----ATCCCATCTAATGCACTTCTCTGACAGGGCATCGAGGCCTTCACGAAGCTTGTTCAAGCCGCCCAATCCAAATTCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................GCCTTCACGAAGCTTGTTCAAG...................2212.0020200000000
..................CCATTAAGAACAACTGTGCAGA......................................................................................................................2211.0010100000000
................TTCCATTAAGAACAACTGTGCAGA......................................................................................................................2411.0010100000000
...............................................................................................................................AGCTTGTTCAAGCCGCCCA............1911.0010100000000
droPer2
CTATGTGCGAATCCGGTTCCATTAAGAACAACTGTGCAGAGATTAACCAGGTAAAAAGTGTCCTGAAGTAGCCTGAATTTAATCCCATCTAATGCACTTCTCTGACAGGGCATCGAGGCCTTCACGAAGCTTGTTCAAGCCGCCCAATCCAAATTCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................TTAAGAACAACTGTGCAGA......................................................................................................................1911.001010000

Generated: 05/18/2015 at 05:27 AM