ID:

dps_2794

 Coordinate:

XL_group1e:10879274-10879424 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.7 -4.4 -4.3

Flybase annnotation

CDS [Dpse\GA23696-cds]; exon [dpse_GLEANR_1291:7]; intron [Dpse\GA23696-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
  1. XL_group1e:2308184-2308205 -
  2. XL_group1e:8419630-8419651 -
  3. XL_group1e:8419831-8419852 -
  4. dps_2794  XL_group1e:10879335-10879356 +
  5. 2:2726027-2726048 +
  6. 4_group3:11151096-11151117 -
  7. Unknown_group_602:7056-7077 +
  8. 4_group4:1863789-1863810 +
  9. Unknown_group_73:24197-24218 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAACAACTACAACTACAACAAAACTATTACCAACAATTGCACACAACATAACAAAAAAAAAAAAAAAAAACCAAAAAAAATCAAGAACAAAGTACTATCATTTATCGATCAATCAACTATTTTCAAATAGTACCTATCGGTTTCAATCTACCGATAAAAATCACTTGTAAATAATTACATAAACTGCA
**************************************************........................................................................................................(((((((............................))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343916
embryo
 M040
female body
 SRR902010
ovaries
 M059
embryo
......................................................................................................................AAAAAAAAAAAAAAACAAAAACAAATCAAAAACAA.................................................................................................. 35 3 3 0.33 1 1 0 0 0
.................................................................................................................AAAAAAAAAAAAAAAAAAAACCAAAAAAAAACAACA...................................................................................................... 36 3 3 0.33 1 1 0 0 0
......................................................................................................TACACAACATAAAAAAAAAAAAAAA............................................................................................................................ 25 2 6 0.17 1 0 0 1 0
..........................................................................................................................AAAAAAAAAAACCAACCAAAATCA......................................................................................................... 24 2 7 0.14 1 1 0 0 0
...............................................................................................................TAACAAAAAAAAAAAAAAAAAA...................................................................................................................... 22 0 9 0.11 1 0 1 0 0
....................................................................................................................................................................................TATTTACAAATAGTACCA..................................................... 18 2 15 0.07 1 0 1 0 0
................................................................................................................AACAAAAAAAAAAAAAAAAA....................................................................................................................... 20 0 20 0.05 1 0 1 0 0
..........................................GAATAATGGTGAGATAGTA.............................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0
..........................................GAAGAATGGTGACTTTGTA.............................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0
...............................................................................................................AAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAACAA........................................................................................................ 36 3 20 0.05 1 1 0 0 0
...................................................................................................................................................................................TTATTTACAAATAGTACCCA.................................................... 20 3 20 0.05 1 0 0 0 1
..................................................................................................................................................................................................GACTATCGGTTTCAAGCT....................................... 18 3 20 0.05 1 0 1 0 0
.................................................................................................................AAAAAAAAAAAAAAAAAAAACCAAAAAAAAACAAAA...................................................................................................... 36 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

AAGGCTTATGCATGACACCTGCACCATAGCGACAGTCATGTCCTTATTACCACTCAAAAATTGTTTGTTGATGTTGATGTTGTTTTGATAATGGTTGTTAACGTGTGTTGTATTGTTTTTTTTTTTTTTTTTTGGTTTTTTTTAGTTCTTGTTTCATGATAGTAAATAGCTAGTTAGTTGATAAAAGTTTATCATGGATAGCCAAAGTTAGATGGCTATTTTTAGTGAACATTTATTAATGTATTTGACGT
**************************************************........................................................................................................(((((((............................))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343916
embryo
 M040
female body
...............................................................................................................................................................................................................TTACATGGCTCTTTTTCGTGAA...................... 22 3 3 0.33 1 1 0
.............................AGACCGTCATGTCCTTATAA.......................................................................................................................................................................................................... 20 3 4 0.25 1 0 1
...........................................................ATTGTTTGTTAATGCTGCTGTT.......................................................................................................................................................................... 22 3 5 0.20 1 0 1
.........................................................................................AATGGTTCTTACCGTGTGAT.............................................................................................................................................. 20 3 6 0.17 1 1 0
.................................................................................................................................................................GTAAGGAGCTAGTTAGTT........................................................................ 18 2 11 0.09 1 0 1
..................................................................................................................GTTTTTTTTTTTTTTGTTTGGT................................................................................................................... 22 1 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:10879224-10879474 + dps_2794 TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAACAAC----------TACAACTACAACAAAACTATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAA-------------------------AAAAAAAAAAAAA-AAAC-----------------------------------------------------------------------------------CAAAA---------------------------AAAATC---------AAGAACAAAGTACTA-TC---------------------------------------------------------------------------------------------ATTTATCGA-------------TCAATCAACTATTTTCAAATAGTACCTATCGG------------------------------------------------------------------------------------TTTCAATCT---------------------ACCGATA---------------------------------------------------AAA-ATCACTTGTAAATAA-TTACATAAACTGCA
droPer2 scaffold_14:321203-321453 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAACAAC----------TACAACTACAACAAAACTATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAA-------------------------AAAAAAAAAAAAA-AAAC-----------------------------------------------------------------------------------CAAAA---------------------------AAAATC---------AAGAACAAAGAACTA-TC---------------------------------------------------------------------------------------------ATTTATCGA-------------TCAATCAACTATTTTCAAATAGTACCTATCGG------------------------------------------------------------------------------------TTTCAATCT---------------------ACCGATA---------------------------------------------------AGA-ATCACTTGTAAATAA-TTACATAAACTGCA
droWil2 scf2_1100000004909:8993846-8994078 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTA-CAAT--------------AAC---------A--ACTAT-------AACAATTC------------AAACAAAAAAAAAAACAAATAACAAGAAACCAAAAGAAAAAAAAAAA----------AAAAAACTA----------------------------TTTATTGCACACC--TTAACTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------------AA----CTGAGAATCAACAAGCAAGATAACTTGTTCAAATTATATC-------------ATT-ATCGCGTGTAAATAA-TTACATT-ACTGCA
droVir3 scaffold_12932:278086-278226 - TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAATAAATACAAAAAAA----A------AAAACAAAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------------------------------------------------------------------------------------------------------CCAAATAAACAAAA-TAA------------------AA----CA---------------------------------------------------AAA-AACAA-------------------------
droMoj3 scaffold_6308:291119-291382 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACCTTCAA-ATAAAAAA--------------------------------A---A------------AAAAAAAAAAAAAAACA--------------------------------------------------------------------------------------------------------------------------------------AATAAAA----A-------ATCCAACAAAAAATATTTTCTTATTAAAAAAAAAAAATAC------------TGTCCAACTGCACACA------------------CATCAAATTA------------GCAATA---------------------------------------------------------------AAAATTAACTGTTTC---------------TAATCGAACATCCTGCTCATTTCGTTTATCGA-------------TAAT------------------------TCGG------------------------------------------------------------------------------------TTT---------------------------ATCGATT---------------------------------------------------G-A-TTCATATGTAAATAA-TTACAT--------
droGri2 scaffold_14853:2502023-2502305 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACTAC--------------------------AA-AACA--------AA----------------------------------------CAAAAACCCAAAAAAAAAAAAAACATTTTAGAAAA------T--------TTAT---------------------------------------------------------------------------------------AAACAAAAA------------------------------AAAAATACTTAGATACAAAATGTACAATTGCACACA------------------CATCAAAATCGAATCGAAT---ACAATAAAATG------------------ATCG-----------------------------------------------TCTCAAACTACAATTACTTTAACCGAACGTATT-TTC-----ATTTT------------------AA------------------------------------------------------------------------------------------------------------------CTCAAC-TCG------------------AG----CT---------------T-----------------------------------GATATTCATATGTAAATAA-TTGCATTTATCGCA
droAna3 scaffold_13117:2738645-2738911 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTA-CTAC--------------------------AA-ACTA---C---AAAAA---------------------------------------AAAAAACCAAAAAAAAAA----------------------T-A-------TATAATTAAACAAGAAAACAAAAAATTGCACACATT--ACCAG---------------------AAA--A------------AAACCAT----------------------------------------------------------------------------AACC-AGAAAAATCTAAAAATCA------AATTGAA----GCAAAA-AT---------AAGAAACA-TCATTG----------------------------------------------------------------------------------------------TCGA------------AAC------------------------------------------------------------------------------------------------------------AAGATTTTTT------G------------------A-----CA--------------------------------------ACAAAAAAAAAAAAAA-GTCACGTGTATATATTTTACATAAATCGCA
droBip1 scf7180000396696:391176-391430 - TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACTAC--------------------------AA-CA-ACTAC---AAACA-------------------------------------ACAAAAAACCAAAACAAAAA----------------------TTATATATATTATAATTAAACA--------ACAAATTGCACACAACAAACCAT--------------------------------------------------------------------------------------------------------------------------AACC-AGAA-AATCTAAAAATCA------AATTGAA----GCAAAAAATTGAAG-----AGAAACA-TCATTG----------------------------------------------------------------------------------------------TCGA------------CTCAA--GAC---------------------------------------------------------------------------------------------------------TGTTTT------G-------------------A----CA---------------------------------------------------AAT-GTCACGTGTATATATCTTACATAAATTGCA
droKik1 scf7180000302544:979097-979290 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAAACAACAA-AAAAAAAACA--------------AAATATTATATACAAAAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACC-------------------------------------------------------------------------------------------------------------------------------CAAAA---------------------------AAAA------------AGAG-AAAGAACTAATA---------------------------------------------------------------------------------------------AT-------------------------TA------------------------------------------------------------------------------------------ATTATT---------AATGTT-C-----AG------------------AC----CA---------------------------------------------------AAA-ATCACGTGTAAATAA-TTACATAAACTGCA
droFic1 scf7180000454045:402341-402554 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATATACTCAAAGAAA--A------AAAACAAAA----C---------------------------------------------------------------------------------------------------------------------------------------------------G--------TCGAAAAAAATA------TTTA----AAA------------------------------------------------------------------------AATC------------------------------------------------------------------------------------------------------------AAGATCTTTTTAA-TAGAAA---------------AA----CA---------------------------------------------------GAT-ATCACATGTAAATAA-TTACATAAACTGCA
droEle1 scf7180000491272:139623-139828 - TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAAAAATCAAAAAA-ATGTAATAAAAA--CAAA------AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAAAAATT------TTTAACAAAAAAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATCTTTCAAA-TAG------------------AA----CA---------------------------------------------------GAA-ATCATATGTAAATAA-TTACATAAACTGCA
droRho1 scf7180000779588:333011-333214 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAAATTATATTTAAAAAAAA--------AAACA-AGAC---AAGAAAAGAA---------------------------------------------------------------------------------------------------------------------AAG-------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAATATGTT-CTAT-TTG------------------AA----CA---------------------------------------------------GAA-ATCACGTGTAAATAA-TTACATAAGCTGCA
droBia1 scf7180000301345:206955-207166 - TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA-TA--TGTTCAACAATCGAAA------AAATTAC-------------TT---------------------------------------------------ATCGAAAAAGAAAATATATC------------------------------------------------------------------------------------------------------------AAGATCTTTCAAA-CAG------------------AA----CA---------------------------------------------------AAT-ATCACGTGTAAATAA-TTACATAAGCTGCA
droTak1 scf7180000415281:413555-413767 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAACAACAAAGA------AAATTAG----C------AATT---------------------------------------------------AGCCAAAAA-AAAACAAATC------------------------------------------------------------------------------------------------------------AAGATCTTTCAAA-TAG------------------AA----CA---------------------------------------------------AAA-ATCACATGTAAATAA-TTACATAAACTGCA
droEug1 scf7180000409182:215015-215228 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTGCACACACACAAC------AACATATA-------ACAA-----------------------------------------------------------------------------------ATCAAGAATCAAAAAATATATAT--ATCAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAA------A--------------------------------------------------------------------------------------T--ATA------------------------------------------------------------------------------------------------------------AAGATCTTTCA-----GAAAAAAAAACCTAAACTGAA----CT---------------------------------------------------GAA-ATCACGTGTAAATAA-TTACATAAACTGCA
dm3 chrX:5288172-5288400 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATGTATTAAACAAACAAAAAAAAAAAAAA-AAAC-----------------------------------------------------------------------------------CAAAA---------------------------AAAA------------AGAA-ACCGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTTAAAAACCAAATGTTTCAAACTAG------------------AA----CA---------------------------------------------------GAT-ATCACGTGTAAATAA-TTACATAAACTGCA
droSim2 x:4934529-4934831 + dsi_19173 TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATGTATTAAACAAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-AC------------CG----------------------------------------------------------------------------------------------TCGG------------CTTAC--GAC-------------------TCGGTTCCGGAAGCTTACTTCTCCGCCGTCATGAACGTATCCGGCACAGCCGGATATGCAAGATACCCTTTGATTTAAATACCAGATGTTTCAAACTAG------------------AA----CA---------------------------------------------------GAT-ATCACGTGTAAATAA-TTACATAAACTGCA
droSec2 scaffold_4:1466471-1466686 - TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATGTATTAAACAAAAA--------AAAAA-AAAA---CAAACAAAAA-----------------------------------------------------------------------------------------------------------------------------AGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTTAAAAACCAGATGTTTGAAACTAG------------------AA----CA---------------------------------------------------GAT-ATCACGTGTAAATAA-TTACATACAATGCA
droYak3 X:3181454-3181648 - TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATGTATAAAACAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAA------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTTAAATACCAGATATTTCAAA-TAG------------------AA----CA---------------------------------------------------GAA-ATCACGTGTAAATAA-TTACATAAACTGCA
droEre2 scaffold_4690:2642394-2642600 + TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATGTATAAAACAA----A------AAAACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATA------T-----------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------TATTATTTAAAAACCAGATGTTTCAAA-TAG------------------AA----CA---------------------------------------------------GATATTCACGTGTAAATAA-TTACATAAACTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAACAAC----------TACAACTACAACAAAACTATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAA-------------------------AAAAAAAAAAAAA-AAAC-----------------------------------------------------------------------------------CAAAA---------------------------AAAATC---------AAGAACAAAGTACTA-TC---------------------------------------------------------------------------------------------ATTTATCGA-------------TCAATCAACTATTTTCAAATAGTACCTATCGG------------------------------------------------------------------------------------TTTCAATCT---------------------ACCGATA---------------------------------------------------AAA-ATCACTTGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................TAACAA-------------------------AAAAAAAAAAAAA-AAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.1110100000000
..............................................................................................................................................................................................................................................AACAA-------------------------AAAAAAAAAAAAA-AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
droPer2
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAACAAC----------TACAACTACAACAAAACTATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAA-------------------------AAAAAAAAAAAAA-AAAC-----------------------------------------------------------------------------------CAAAA---------------------------AAAATC---------AAGAACAAAGAACTA-TC---------------------------------------------------------------------------------------------ATTTATCGA-------------TCAATCAACTATTTTCAAATAGTACCTATCGG------------------------------------------------------------------------------------TTTCAATCT---------------------ACCGATA---------------------------------------------------AGA-ATCACTTGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..CCGAATACGTACTGTGGACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................ATAACAA-------------------------AAAAAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droWil2
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTA-CAAT--------------AAC---------A--ACTAT-------AACAATTC------------AAACAAAAAAAAAAACAAATAACAAGAAACCAAAAGAAAAAAAAAAA----------AAAAAACTA----------------------------TTTATTGCACACC--TTAACTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------------AA----CTGAGAATCAACAAGCAAGATAACTTGTTCAAATTATATC-------------ATT-ATCGCGTGTAAATAA-TTACATT-ACTGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................AACAAAAAAAAAAACAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
..............................................................................................................................................................AAAAGAAAAAAAAAAA----------AAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
droVir3
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAAAAAATAAATACAAAAAAA----A------AAAACAAAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------------------------------------------------------------------------------------------------------CCAAATAAACAAAA-TAA------------------AA----CA---------------------------------------------------AAA-AACAA-------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACCTTCAA-ATAAAAAA--------------------------------A---A------------AAAAAAAAAAAAAAACA--------------------------------------------------------------------------------------------------------------------------------------AATAAAA----A-------ATCCAACAAAAAATATTTTCTTATTAAAAAAAAAAAATAC------------TGTCCAACTGCACACA------------------CATCAAATTA------------GCAATA---------------------------------------------------------------AAAATTAACTGTTTC---------------TAATCGAACATCCTGCTCATTTCGTTTATCGA-------------TAAT------------------------TCGG------------------------------------------------------------------------------------TTT---------------------------ATCGATT---------------------------------------------------G-A-TTCATATGTAAATAA-TTACAT--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................CAA-ATAAAAAA--------------------------------A---A------------AAAAAAAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
........................................................................AAAAAA--------------------------------A---A------------AAAAAAAAAAAAAAACA--------------------------------------------------------------------------------------------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
droGri2
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACTAC--------------------------AA-AACA--------AA----------------------------------------CAAAAACCCAAAAAAAAAAAAAACATTTTAGAAAA------T--------TTAT---------------------------------------------------------------------------------------AAACAAAAA------------------------------AAAAATACTTAGATACAAAATGTACAATTGCACACA------------------CATCAAAATCGAATCGAAT---ACAATAAAATG------------------ATCG-----------------------------------------------TCTCAAACTACAATTACTTTAACCGAACGTATT-TTC-----ATTTT------------------AA------------------------------------------------------------------------------------------------------------------CTCAAC-TCG------------------AG----CT---------------T-----------------------------------GATATTCATATGTAAATAA-TTGCATTTATCGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTA-CTAC--------------------------AA-ACTA---C---AAAAA---------------------------------------AAAAAACCAAAAAAAAAA----------------------T-A-------TATAATTAAACAAGAAAACAAAAAATTGCACACATT--ACCAG---------------------AAA--A------------AAACCAT----------------------------------------------------------------------------AACC-AGAAAAATCTAAAAATCA------AATTGAA----GCAAAA-AT---------AAGAAACA-TCATTG----------------------------------------------------------------------------------------------TCGA------------AAC------------------------------------------------------------------------------------------------------------AAGATTTTTT------G------------------A-----CA--------------------------------------ACAAAAAAAAAAAAAA-GTCACGTGTATATATTTTACATAAATCGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................GTCAGTACAGGAATAATGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------A-----CA--------------------------------------ACAAAAAAAAAAAAAA-..............................2020.501010000
............................................................................................................AAA---------------------------------------AAAAAACCAAAAAAAAAA----------------------T-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.171010000
..........................................................................................................AAAAA---------------------------------------AAAAAACCAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
...........................................................................................................AAAA---------------------------------------AAAAAACCAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
............................................................................................................AAA---------------------------------------AAAAAACCAAAAAAAAAA----------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droBip1
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACTAC--------------------------AA-CA-ACTAC---AAACA-------------------------------------ACAAAAAACCAAAACAAAAA----------------------TTATATATATTATAATTAAACA--------ACAAATTGCACACAACAAACCAT--------------------------------------------------------------------------------------------------------------------------AACC-AGAA-AATCTAAAAATCA------AATTGAA----GCAAAAAATTGAAG-----AGAAACA-TCATTG----------------------------------------------------------------------------------------------TCGA------------CTCAA--GAC---------------------------------------------------------------------------------------------------------TGTTTT------G-------------------A----CA---------------------------------------------------AAT-GTCACGTGTATATATCTTACATAAATTGCASizeHit CountTotal NormTotal
No Reads
droKik1
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAAACAACAA-AAAAAAAACA--------------AAATATTATATACAAAAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACC-------------------------------------------------------------------------------------------------------------------------------CAAAA---------------------------AAAA------------AGAG-AAAGAACTAATA---------------------------------------------------------------------------------------------AT-------------------------TA------------------------------------------------------------------------------------------ATTATT---------AATGTT-C-----AG------------------AC----CA---------------------------------------------------AAA-ATCACGTGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotal
No Reads
droFic1
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATATACTCAAAGAAA--A------AAAACAAAA----C---------------------------------------------------------------------------------------------------------------------------------------------------G--------TCGAAAAAAATA------TTTA----AAA------------------------------------------------------------------------AATC------------------------------------------------------------------------------------------------------------AAGATCTTTTTAA-TAGAAA---------------AA----CA---------------------------------------------------GAT-ATCACATGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotal
No Reads
droEle1
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAAAAATCAAAAAA-ATGTAATAAAAA--CAAA------AAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAAAAATT------TTTAACAAAAAAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATCTTTCAAA-TAG------------------AA----CA---------------------------------------------------GAA-ATCATATGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotal
No Reads
droRho1
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAAATTATATTTAAAAAAAA--------AAACA-AGAC---AAGAAAAGAA---------------------------------------------------------------------------------------------------------------------AAG-------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAATATGTT-CTAT-TTG------------------AA----CA---------------------------------------------------GAA-ATCACGTGTAAATAA-TTACATAAGCTGCASizeHit CountTotal NormTotal
No Reads
droBia1
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA-TA--TGTTCAACAATCGAAA------AAATTAC-------------TT---------------------------------------------------ATCGAAAAAGAAAATATATC------------------------------------------------------------------------------------------------------------AAGATCTTTCAAA-CAG------------------AA----CA---------------------------------------------------AAT-ATCACGTGTAAATAA-TTACATAAGCTGCASizeHit CountTotal NormTotal
No Reads
droTak1
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAACAACAAAGA------AAATTAG----C------AATT---------------------------------------------------AGCCAAAAA-AAAACAAATC------------------------------------------------------------------------------------------------------------AAGATCTTTCAAA-TAG------------------AA----CA---------------------------------------------------AAA-ATCACATGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotal
No Reads
droEug1
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTGCACACACACAAC------AACATATA-------ACAA-----------------------------------------------------------------------------------ATCAAGAATCAAAAAATATATAT--ATCAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAA------A--------------------------------------------------------------------------------------T--ATA------------------------------------------------------------------------------------------------------------AAGATCTTTCA-----GAAAAAAAAACCTAAACTGAA----CT---------------------------------------------------GAA-ATCACGTGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotal
No Reads
dm3
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATGTATTAAACAAACAAAAAAAAAAAAAA-AAAC-----------------------------------------------------------------------------------CAAAA---------------------------AAAA------------AGAA-ACCGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTTAAAAACCAAATGTTTCAAACTAG------------------AA----CA---------------------------------------------------GAT-ATCACGTGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................TATCGCTGTCAGTACAGGAATAATGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
......ATACGTACTGTGGACGTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TATCGCTGTCAGTACAGGAATAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................TATCGCTGTCAGTACAGGAATAATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................TAATGGTGAGTTTTTAACAAC--------------------------AA-AATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCCGAATACGTACTGTGGACGTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TCGCTGTCAGTACAGGAATAATGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................TCAGTACAGGAATAATGGTGAGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........TACTGTGGACGTGGTATCGCTGTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............GTGGACGTGGTATCGCTGTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................CAAACAAAAAAAAAAAAAA-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................AACAAACAAAAAAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AAACAAAAAAAAAAAAAA-AAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AAAAAAAAAAAA-AAAC-----------------------------------------------------------------------------------CAAAA---------------------------..................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AACAAAAAAAAAAAAAA-AAAC-----------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CAAACAAAAAAAAAAAAAA-AAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
droSim2
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATGTATTAAACAAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-AC------------CG----------------------------------------------------------------------------------------------TCGG------------CTTAC--GAC-------------------TCGGTTCCGGAAGCTTACTTCTCCGCCGTCATGAACGTATCCGGCACAGCCGGATATGCAAGATACCCTTTGATTTAAATACCAGATGTTTCAAACTAG------------------AA----CA---------------------------------------------------GAT-ATCACGTGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................AACAAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-A............................................................................................................................................................................................................................................................................................................................................................................36226.0052000000000005200000
...................................................................................................................................................................................................................................................................AAACAAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-.............................................................................................................................................................................................................................................................................................................................................................................36125.0025000000000002500000
........................................................................................................................................................................................................................................................................................A-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------..................................................................................................................................................................................................................................................................................................................................................................................19206.901380001300000000080000
.........................................................................................................................................................................................................................................................................AAA--------AAAAA-AAAA---AAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20205.001000000000000000100000
..........................................................................................................................................................................................................................................................................AA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------..................................................................................................................................................................................................................................................................................................................................................................................25203.30660013000000000053000
........................................................................................................................................................................................................................................................................AAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------..................................................................................................................................................................................................................................................................................................................................................................................27202.5050000470000000300000
.......................................................................................................................................................................................................................................................................AAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AA................................................................................................................................................................................................................................................................................................................................................................................................26202.3547000470000000000000
......................................................................................................................................................................................................................................................................................AAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-A............................................................................................................................................................................................................................................................................................................................................................................26202.0541000000000000041000
...................................................................................................................................................................................................................................................................AAACAAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAA...............................................................................................................................................................................................................................................................................................................................................................................3512.00200000000000200000
.......................................................................................................................................................................................................................................................................AAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-AC------------C..............................................................................................................................................................................................................................................................................................................................................................3552.0010000000000001000000
....................................................................................................................................................................................................................................................................................AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AA................................................................................................................................................................................................................................................................................................................................................................................................21201.0521000000000000210000
.......................................CAGGAATAATGGTGAGTTTTTAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
.......................................................................................................................................................................................................................................................................AAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-AC------------CG----------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................3631.00300000000000300000
.......................................CAGGAATAATGGTGAGTTTTTAACAAC--------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
........................................................................................................................................................................................................................................................................AAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AA................................................................................................................................................................................................................................................................................................................................................................................................25200.8517000000000000170000
..........................................................................................................................................................................................................................................................................AA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAA...............................................................................................................................................................................................................................................................................................................................................................................28200.8016000160000000000000
.........................................................................................................................................................................................................................................................................AAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAA...............................................................................................................................................................................................................................................................................................................................................................................................25200.6012120000000000000000
....................................................................................................................................................................................................................................................................................AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-A............................................................................................................................................................................................................................................................................................................................................................................28200.40800000000000206000
...............................TGTCAGTACAGGAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1630.33100000000001000000
.........................................................................................................................................................................................................................................................................AAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AA................................................................................................................................................................................................................................................................................................................................................................................28200.25500500000000000000
....................................................................................................................................................................................................................................................................AACAAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AA................................................................................................................................................................................................................................................................................................................................................................................................2980.25200010000000001000
........................................................................................................................................................................................................................................................................AAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-AC------------CC----------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................35180.22400000000000400000
........................................................................................................................................................................................................................................................................AAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-AC------------C..............................................................................................................................................................................................................................................................................................................................................................3450.20100000000000100000
.......................................................................................................................................................................................................................................................................AAAAA--------AAAAA-AAAA---AAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.20400400000000000000
...................................................................................................................................................................................................................................................................AAACAAAAA--------AAAAA-AAAA---AAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.17200020000000000000
...................................................................................................................................................................................................................................................................AAACAAAAA--------AAAAA-AAAA---AAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.11200010000000001000
.....................................................................................................................................................................................................................................................................................AAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-AC------------...............................................................................................................................................................................................................................................................................................................................................................28200.10200000000000011000
.....................................................................................................................................................................................................................................................................ACAAAAA--------AAAAA-AAAA---AAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200100000000001000
...................................................................................................................................................................................................................................................................AAACAAAAA--------AAAAA-AAAA---AAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10200020000000000000
.........................................................................................................................................................................................................................................................................AAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-A............................................................................................................................................................................................................................................................................................................................................................................31200.10200000000000020000
...................................................................................................................................................................................................................................................................AAACAAAAA--------AAAAA-AAAA---AA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020000000000000
....................................................................................................................................................................................................................................................................AACAAAAA--------AAAAA-AAAA---AAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200100000000010000
....................................................................................................................................................................................................................................................................AACAAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................28110.09100000000000001000
......................................................................................................................................................................................................................................................................CAAAAA--------AAAAA-AAAA---AAAAAAAAAA------------------------------------------------------------------------------------------------------AAAA------------AAAA-AC------------A..............................................................................................................................................................................................................................................................................................................................................................36140.07100000000000100000
droSec2
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATGTATTAAACAAAAA--------AAAAA-AAAA---CAAACAAAAA-----------------------------------------------------------------------------------------------------------------------------AGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTTAAAAACCAGATGTTTGAAACTAG------------------AA----CA---------------------------------------------------GAT-ATCACGTGTAAATAA-TTACATACAATGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................GGACGTGGTATCGCTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
droYak3
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATGTATAAAACAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAA------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTTAAATACCAGATATTTCAAA-TAG------------------AA----CA---------------------------------------------------GAA-ATCACGTGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................GTGGTATCGCTGTCAGTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000
droEre2
TTCCGAATACGTACTGTGGACGTGGTATCGCTGTCAGTACAGGAATAATGGTGAGTTTTTAACAAC--------------------------AA-AATATTAC---CAACAATTG-----------------------------------------------------------------------------------------------------------------CACACAACATAACAATCAAGAAATATGTATAAAACAA----A------AAAACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATA------T-----------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------TATTATTTAAAAACCAGATGTTTCAAA-TAG------------------AA----CA---------------------------------------------------GATATTCACGTGTAAATAA-TTACATAAACTGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................GTACAGGAATAATGGTGAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010

Generated: 05/18/2015 at 05:30 AM