dps_2787

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCAAGTCCACTCTGGTCATCTTCTCCTCCAAGCAGTTCCTGCGGCTGAGTGAGACTCAAGTGTCGCTCCTGCTGAAGTCGGATCGTTTGGCAGTCAACTCCGAAATCGAAGTGAGTGTCCCATTTGTACAACATTCCACATTTGATTCATTGCATATCCAAATAGGTTCTGTACAGTGGCTTGTGCTGGCTGCGATACAAGTGGCCCATGCGTCGTGGCAGCGTTGGCAAGGTCCTCAATAGCGTCCGCTA ************************************************....((.....(((((.((.((..((((((((((.(((((..(((((....((.((((((((((((((............)))))).)).)))))))).))).))..)))))..)))))........)))))..)).))..)))))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902011 testis	V112 male body	M040 female body	GSM444067 head
.......................................................................CTGAAGTCGGATCGTTTGGC................................................................................................................................................................	20	0	2	4.00	8	7	0	0	1
.....................................................................TGCTGAAGTCGGATCGTTTGG.................................................................................................................................................................	21	0	2	4.00	8	8	0	0	0
...................................................................CCTGCTGAAGTCGGATCGTTTGG.................................................................................................................................................................	23	0	2	1.50	3	3	0	0	0
......................................................................GCTGAAGTCGGATCGTTTGG.................................................................................................................................................................	20	0	2	1.00	2	2	0	0	0
.......................................................................CTGAAGTCGGATCGTTTGG.................................................................................................................................................................	19	0	2	1.00	2	2	0	0	0
......................................................................................................................................................................................................................GTGGTAGCGTTGGTAAGGT..................	19	2	3	0.67	2	0	0	2	0
...........................................GCTGAATGAGACTCGAGTGT............................................................................................................................................................................................	20	2	2	0.50	1	0	1	0	0
........................................................CAAGTGTCGCTCCTGCTGAAGTCGG..........................................................................................................................................................................	25	0	2	0.50	1	1	0	0	0
.....................................................................................................................................................................................................CAAGTGGCCCATGCGTCGTGG.................................	21	0	2	0.50	1	0	1	0	0
....................................................................................................................................................................................TTGTGCTGGCTGGGATACAA...................................................	20	1	2	0.50	1	1	0	0	0
...............................................................CGCTCCTGCTGAAGTCGGATCGTTTGGC................................................................................................................................................................	28	0	2	0.50	1	1	0	0	0
......................................................................GCTGAAGTCGGATCGTTTGGC................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0
...................................................................................................................................................................AGGTTCTGCACAGGGGCT......................................................................	18	2	5	0.20	1	0	0	1	0
.........................................................................................................................................................................................................TGGCCCCTGCGTCCCGGCA...............................	19	3	20	0.05	1	0	0	1	0

GGTTCAGGTGAGACCAGTAGAAGAGGAGGTTCGTCAAGGACGCCGACTCACTCTGAGTTCACAGCGAGGACGACTTCAGCCTAGCAAACCGTCAGTTGAGGCTTTAGCTTCACTCACAGGGTAAACATGTTGTAAGGTGTAAACTAAGTAACGTATAGGTTTATCCAAGACATGTCACCGAACACGACCGACGCTATGTTCACCGGGTACGCAGCACCGTCGCAACCGTTCCAGGAGTTATCGCAGGCGAT ************************************************....((.....(((((.((.((..((((((((((.(((((..(((((....((.((((((((((((((............)))))).)).)))))))).))).))..)))))..)))))........)))))..)).))..)))))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body	GSM343916 embryo	GSM444067 head	M022 male body	M062 head	SRR902010 ovaries
..........................AGATTCGTCTAGGACTCCG..............................................................................................................................................................................................................	19	3	20	9.10	182	178	3	0	0	1	0	0
.........................GAGATTCGTCTAGGACTCCG..............................................................................................................................................................................................................	20	3	6	3.83	23	11	9	2	1	0	0	0
.........................GAGATTCGTCTAGGACTCC...............................................................................................................................................................................................................	19	3	20	1.05	21	17	4	0	0	0	0	0
......................GAAGAGATTCGTCTAGGAC..................................................................................................................................................................................................................	19	3	20	0.90	18	15	0	0	0	3	0	0
.......................AGGAGATTCGTCTAGGACTCC...............................................................................................................................................................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0
......................GAGGAGATTCGTCTAGGACTC................................................................................................................................................................................................................	21	3	2	0.50	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................CCGACGCTCTGTTAACGGGGT...........................................	21	3	5	0.20	1	0	0	0	0	0	1	0
...............................................................TCGCGGACTACTTCAGCCTA........................................................................................................................................................................	20	3	9	0.11	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................CTGTCGCAACCGTTGCAG.................	18	2	13	0.08	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................CGTTCCAGTAGTCATCCCA......	19	3	20	0.05	1	1	0	0	0	0	0	0
..................................................................................................................................................................................CTAGCACGACCGACACTAT......................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
dp5	XL_group1e:10630746-10630996 -	dps_2787	CCAAGTCCACTCTGGTCATCTTCTCCTCCAAGCAGTTCCTGCGGCTGAGTGAGACTCAAGTGTCGCTCCTGCTGAAGTCGGATCGTTTGGCAGTCAACTCCGAAATCGAAGTGAGT--GTCC---CATTTGTA--------------------------------------------------------------------------------------C--------------------------------------------------------------------------------AACATTCCACATTTGATTCATTGCATATCCAAATAGGTTCTGTACAGTGGCTTGTGCTGGCTGCGATACAAGTGGCCCATGCGTCGTGGCAGCGTTGGCAAGGTCCTCAATAGCGTCCGCTA
droPer2	scaffold_14:64173-64435 -		CCAAGTCCACGCTGGTCATCTTCTCCTCCAAGCAGTTCCTGCGGCTGAGTGAGACTCAAGTGTCGCTTCTTCTGAAGTCGGATCGTTTGGCAGTCAACTCCGAAATTGAAGTGAGT--GTCC---CAG-------AA--------------------------------------------------------------TCGGTTCCCATTTGGA----C--------------------------------------------------------------------------------AACATTCAACATTTCATTGATTGCATATCCAAATAGGTTTTGTACAGTGGCTTGTGCTGGCTGCGATACAAGTGGCCCG-GCGTCGTGGCAGCGTTGGCAAGGTCCTCAATAGCGTCCGCTA
droVir3	scaffold_12875:8444634-8444885 -		CCAAGTCGACGCTGATCATAATCTGCAGTCAGGAATTTCTGCACCTTAGCGAGATGCAGATATGCGCCCTGCTTAGGTCCAGCTCTTTGTCCGTTAACTCTGAAACTGAGGTTGGC--AATGCTCCAATTAGGATTGCTCCAATCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGTTTCTTCCCTTCCGTAGCTACTTTATGGTGTGCTGCACTGGCTGGATGTGGACTGGCCCGCTCGGATGGCGTGTGTGGGTAATGTGCTTAAGAATATACGCTT
droBip1	scf7180000396441:1238-1353 +		CCAAAGCAACTTTGGTAATACTATCCAGTCGTGAGTTTCTTTGCCTCAATGAAAATCAGGTGTGCCATTTGCTAGCATCCAGCTCTTTGGCAGTAAACTCAGAAATGGAGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454038:924496-924749 +		CCAAATCATTTACCACAATTTCATCAAGTCGGGAATTTCTGTGCCTCAGTGAGATGCAGATTTGCATGTTGCTATCGTCAAACAGTTTGGCAGTCAACTCGGAAATGGAGGTTGAC--CTTTTTG----------GTCATATATTCA-------------------------------------------------------------------TTGTTATATTT-----------------------------------------------------------------------------------------TATTATATTTTCTTTTTTATAGGTTTTTTATAGCGCTCTGATGTGGCTTCGTCATTTATGGCCAAGCCGCCGTTCGAGCGTATATAAAGTTTTGAGTCAAATTCGTTT
droEle1	scf7180000490994:163560-163811 +		CTAAATCAATGATGAGAGTGGCCTCAAGCCGGGAATTTTTGGGCCTCAGTGAACGGCAGGTATGCAGCCTACTGCAATCAAATAGCCTGGCAGTCAACTCGGAAATGGAGGTAGTC--CTATTTT----------AACTTATA--------------------------------------------------------------------TACTTATTAAATAC-----------------------------------------------------------------------------------------TA-AATACTGTTTATTATGCAGGTTCTGTACAGCGCATTGTTGTGGCTCAATCATTTATGGCCAAAGCGCAGTTCAAGCACTCATAAGGTTTTAAAAAACATTCGTTT
droRho1	scf7180000776762:64207-64437 +		---------------------------------AATTTCTCTGCCTCAGTGAGCGGCAGGTATGCAGCTTACTGAAATCAAATAGTCTGGCAGTCAACTCGGAAATGGAGGTAGGC--TTAT-------------------------------TAAAA------------------------------------ACCTATAAGTACTCGTATGGTTATTGCATGC-----------------------------------------------------------------------------------------TTAAAGAGTCCCTTTTTCACAGGTTTTGTATTGCGCACTGTTGTGGCTCAATCATTTATGGCCAAAGCGCCGTTCATGCACTCAGAAGATATTAAAAAACATTCGCTT
droBia1	scf7180000302421:2476981-2477307 +		CCAGATCAACCATGGCAGTTCTAGCCAGCCGGGAGTTCATGTGCCTTGCTGAGGTGCAAGTGTGCTGCCTTCTGAAGTCCAGTGGTCTGTCGGTCAACTCGGAAATAGAGGTAGGC--CGTCCTT----------GAGTAACA--------------------------------------------------------------------TGAGTAATCTATACTGAAACATGATTTGTTACCTTTATATTGTACAGAAATTGGACATATCATACATATTCTGTATTGCCTTTTAATGA--------------CAGTATA-TTTTTCCTGGACAGCTCTTATATGGCGCCCTATCGTGGCTTCTATACGGCTGGCCAGCACGCCGTTCTAGCACTAACAGGATCTTGAAAAACATTCGCTA
droTak1	scf7180000415580:422884-423135 -		CCAGAGCCACTTTGTCCATTATAGCTAGCCGGGAATTCTTGAGCATGAGTGAGGTGCAAGTATGCTGCTTGCTGAAATCAAGTTATCTGGCAGTGAATTCGGAAATTGAGGTAATGTACATACTAAAAAAAGCAAGATTTCAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATCTTTTCTACTCCAGCTTTTATATAGTGCTTTGATGTGGCTCTTTCATCACTGGCCAGAACGCCAATCCAGCACTGTAAAGGTTTTGAAAAACATTCGTTA
droSim2	x:14828719-14828992 +		CCACTTCAATTTTGCCAGCCGCATCGACTCGGGAATTCCTGTTCCTCAACGAAATGCAAATTTGCAGCATCCTCAAGTCCAACTTTCTGGCAGTCAATTCGGAAATGGAGGCAAGT--CCTA---TAGCTATATCTATATCTATATATCTGTTTAACT------------------------------------ACCTAGAAGTATAACCGTGATATAT-----------------------------------------------------------------------------------------------------------GTATCCACAGCTTTTATATTCCGCCCTAATGTGGCTAGCGCATCTTTGGCCGGAACGACGTTCGAGCACCTATCCGGTTTTGAATCAAATTCGCTA
droSec2	scaffold_37:235293-235566 +		CCACTTCAATTTTGCCAGTCGCATCGACTCGGGAATTCCTGTTCCTCAACGAAATGCAAATTTGCAGCATACTCAAGTCCAACTTTCTGGCAGTCAATTCGGAAATAGAGGCAAGT--CCTA---TATCTATATCTATATCTATATATCTGTTTAACT------------------------------------ACCTAGAAGTATAACCGTGATATAT-----------------------------------------------------------------------------------------------------------GTATCCACAGCTTTTATATTCCGCCCTAATGTGGCTAGCGCATCTTTGGCCGGAACGACGTTCGAGCACCTATCCGGTTTTGAATCAAATTCGCTA
droYak3	X:9855987-9856306 +		ACAGGGCAACTTTGCCAGCCGCATCCACTAGGGAGTTCCTCAGCATCAGCGAGGTGCAAATTTGCTCCATACTGAAGTCCAGTACTCTGGCAGTCAACTCGGAAATGGAGGCAAGT--ACA------TCTATCTGTCAATCTATCTATCTATGTATCTAAATATATGTGGCGAAAGCTTTGATGTTTCCTAATAAGATATAAGTAA--CTATAGTAATCCAATGA-----------------------------------------------------------------------------------------TCCTAA---CTTCAATTCACAGCTCCTATACTGCGCCTTGATGTGGCTATCGCATTGCTGGCCACAGCGCCGTTCCAGCACCAATGTGGTTTTGAAACACATCCGCTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

CCAAGTCCACTCTGGTCATCTTCTCCTCCAAGCAGTTCCTGCGGCTGAGTGAGACTCAAGTGTCGCTCCTGCTGAAGTCGGATCGTTTGGCAGTCAACTCCGAAATCGAAGTGAGT--GTCC---CATTTGTA--------------------------------------------------------------------------------------C--------------------------------------------------------------------------------AACATTCCACATTTGATTCATTGCATATCCAAATAGGTTCTGTACAGTGGCTTGTGCTGGCTGCGATACAAGTGGCCCATGCGTCGTGGCAGCGTTGGCAAGGTCCTCAATAGCGTCCGCTA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................CTGAAGTCGGATCGTTTGGC...........................................................................................................................................................................................................................................................................................................................................	20	2	4.00	8	0	0	0	0	0	1	0	0	7	0
.....................................................................TGCTGAAGTCGGATCGTTTGG............................................................................................................................................................................................................................................................................................................................................	21	2	4.00	8	0	0	0	0	0	0	0	0	8	0
...................................................................CCTGCTGAAGTCGGATCGTTTGG............................................................................................................................................................................................................................................................................................................................................	23	2	1.50	3	0	0	0	0	0	0	0	0	3	0
......................................................................GCTGAAGTCGGATCGTTTGG............................................................................................................................................................................................................................................................................................................................................	20	2	1.00	2	0	0	0	0	0	0	0	0	2	0
.......................................................................CTGAAGTCGGATCGTTTGG............................................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	2	0
........................................................CAAGTGTCGCTCCTGCTGAAGTCGG.....................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCCCATGCGTCGTGG.................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0
...............................................................CGCTCCTGCTGAAGTCGGATCGTTTGGC...........................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	1	0
......................................................................GCTGAAGTCGGATCGTTTGGC...........................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	1	0

droPer2

CCAAGTCCACGCTGGTCATCTTCTCCTCCAAGCAGTTCCTGCGGCTGAGTGAGACTCAAGTGTCGCTTCTTCTGAAGTCGGATCGTTTGGCAGTCAACTCCGAAATTGAAGTGAGT--GTCC---CAG-------AA--------------------------------------------------------------TCGGTTCCCATTTGGA----C--------------------------------------------------------------------------------AACATTCAACATTTCATTGATTGCATATCCAAATAGGTTTTGTACAGTGGCTTGTGCTGGCTGCGATACAAGTGGCCCG-GCGTCGTGGCAGCGTTGGCAAGGTCCTCAATAGCGTCCGCTA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droVir3

CCAAGTCGACGCTGATCATAATCTGCAGTCAGGAATTTCTGCACCTTAGCGAGATGCAGATATGCGCCCTGCTTAGGTCCAGCTCTTTGTCCGTTAACTCTGAAACTGAGGTTGGC--AATGCTCCAATTAGGATTGCTCCAATCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGTTTCTTCCCTTCCGTAGCTACTTTATGGTGTGCTGCACTGGCTGGATGTGGACTGGCCCGCTCGGATGGCGTGTGTGGGTAATGTGCTTAAGAATATACGCTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................TCTTTGTCCGTTAACTCTGAAACTGAGC.......................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGTAATGTGCTTAAGAATATACGC..	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TGCACTGGCTGGATGTGGAC..................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droBip1

CCAAAGCAACTTTGGTAATACTATCCAGTCGTGAGTTTCTTTGCCTCAATGAAAATCAGGTGTGCCATTTGCTAGCATCCAGCTCTTTGGCAGTAAACTCAGAAATGGAGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCAAATCATTTACCACAATTTCATCAAGTCGGGAATTTCTGTGCCTCAGTGAGATGCAGATTTGCATGTTGCTATCGTCAAACAGTTTGGCAGTCAACTCGGAAATGGAGGTTGAC--CTTTTTG----------GTCATATATTCA-------------------------------------------------------------------TTGTTATATTT-----------------------------------------------------------------------------------------TATTATATTTTCTTTTTTATAGGTTTTTTATAGCGCTCTGATGTGGCTTCGTCATTTATGGCCAAGCCGCCGTTCGAGCGTATATAAAGTTTTGAGTCAAATTCGTTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTAAATCAATGATGAGAGTGGCCTCAAGCCGGGAATTTTTGGGCCTCAGTGAACGGCAGGTATGCAGCCTACTGCAATCAAATAGCCTGGCAGTCAACTCGGAAATGGAGGTAGTC--CTATTTT----------AACTTATA--------------------------------------------------------------------TACTTATTAAATAC-----------------------------------------------------------------------------------------TA-AATACTGTTTATTATGCAGGTTCTGTACAGCGCATTGTTGTGGCTCAATCATTTATGGCCAAAGCGCAGTTCAAGCACTCATAAGGTTTTAAAAAACATTCGTTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

---------------------------------AATTTCTCTGCCTCAGTGAGCGGCAGGTATGCAGCTTACTGAAATCAAATAGTCTGGCAGTCAACTCGGAAATGGAGGTAGGC--TTAT-------------------------------TAAAA------------------------------------ACCTATAAGTACTCGTATGGTTATTGCATGC-----------------------------------------------------------------------------------------TTAAAGAGTCCCTTTTTCACAGGTTTTGTATTGCGCACTGTTGTGGCTCAATCATTTATGGCCAAAGCGCCGTTCATGCACTCAGAAGATATTAAAAAACATTCGCTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCAGATCAACCATGGCAGTTCTAGCCAGCCGGGAGTTCATGTGCCTTGCTGAGGTGCAAGTGTGCTGCCTTCTGAAGTCCAGTGGTCTGTCGGTCAACTCGGAAATAGAGGTAGGC--CGTCCTT----------GAGTAACA--------------------------------------------------------------------TGAGTAATCTATACTGAAACATGATTTGTTACCTTTATATTGTACAGAAATTGGACATATCATACATATTCTGTATTGCCTTTTAATGA--------------CAGTATA-TTTTTCCTGGACAGCTCTTATATGGCGCCCTATCGTGGCTTCTATACGGCTGGCCAGCACGCCGTTCTAGCACTAACAGGATCTTGAAAAACATTCGCTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCAGAGCCACTTTGTCCATTATAGCTAGCCGGGAATTCTTGAGCATGAGTGAGGTGCAAGTATGCTGCTTGCTGAAATCAAGTTATCTGGCAGTGAATTCGGAAATTGAGGTAATGTACATACTAAAAAAAGCAAGATTTCAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTATCTTTTCTACTCCAGCTTTTATATAGTGCTTTGATGTGGCTCTTTCATCACTGGCCAGAACGCCAATCCAGCACTGTAAAGGTTTTGAAAAACATTCGTTA	Size	Hit Count	Total Norm	Total
No Reads

droSim2

CCACTTCAATTTTGCCAGCCGCATCGACTCGGGAATTCCTGTTCCTCAACGAAATGCAAATTTGCAGCATCCTCAAGTCCAACTTTCTGGCAGTCAATTCGGAAATGGAGGCAAGT--CCTA---TAGCTATATCTATATCTATATATCTGTTTAACT------------------------------------ACCTAGAAGTATAACCGTGATATAT-----------------------------------------------------------------------------------------------------------GTATCCACAGCTTTTATATTCCGCCCTAATGTGGCTAGCGCATCTTTGGCCGGAACGACGTTCGAGCACCTATCCGGTTTTGAATCAAATTCGCTA

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

CCACTTCAATTTTGCCAGTCGCATCGACTCGGGAATTCCTGTTCCTCAACGAAATGCAAATTTGCAGCATACTCAAGTCCAACTTTCTGGCAGTCAATTCGGAAATAGAGGCAAGT--CCTA---TATCTATATCTATATCTATATATCTGTTTAACT------------------------------------ACCTAGAAGTATAACCGTGATATAT-----------------------------------------------------------------------------------------------------------GTATCCACAGCTTTTATATTCCGCCCTAATGTGGCTAGCGCATCTTTGGCCGGAACGACGTTCGAGCACCTATCCGGTTTTGAATCAAATTCGCTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................ATCGACTCGGGAATTCCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0

droYak3

ACAGGGCAACTTTGCCAGCCGCATCCACTAGGGAGTTCCTCAGCATCAGCGAGGTGCAAATTTGCTCCATACTGAAGTCCAGTACTCTGGCAGTCAACTCGGAAATGGAGGCAAGT--ACA------TCTATCTGTCAATCTATCTATCTATGTATCTAAATATATGTGGCGAAAGCTTTGATGTTTCCTAATAAGATATAAGTAA--CTATAGTAATCCAATGA-----------------------------------------------------------------------------------------TCCTAA---CTTCAATTCACAGCTCCTATACTGCGCCTTGATGTGGCTATCGCATTGCTGGCCACAGCGCCGTTCCAGCACCAATGTGGTTTTGAAACACATCCGCTT

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

-36.6	-36.6	-36.5	-36.5

dps_2787

XL_group1e:10630796-10630946 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads