ID:

dps_2784

 Coordinate:

XL_group1e:10401315-10401483 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.0 -31.9 -31.8

Flybase annnotation

CDS [Dpse\GA22870-cds]; CDS [Dpse\GA22870-cds]; exon [dpse_GLEANR_112:9]; exon [dpse_GLEANR_112:10]; intron [Dpse\GA22870-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTCTACAAAGTGTACCTCCAAGCAGTTTAAAAACGACCAAAGTACAGCTTCTAACCGTGATATAATATTGGAAGCTGCAGCAACAACAGCAGCGATAGTGCCAGAGCCCTCTCAGTCCCAAAACTCTGAAGCCGCAAACGCTGTCCATGCCCTATCGAACGGTTAGCCCTATACAAATCTGTTCTTTCTCATTCTAAGAAATCTTTTGCTTCAATTTAGATCGAGAACAAGAAGAGAGCAGTGATACAAGCCGCAATATTTGGCATGGC
**************************************************((((((((((((......((((.(((((..........)))))....((..(((((.................)))))..)).((....))..)))).....))))..)))))))).......((((....(((((.........)))))....))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 M059
embryo
 M062
head
 GSM343916
embryo
........................................................................................................................................................................................................................TAGATCGAGAACAAGAAGAGAGCAG............................ 25 0 1 2.00 2 0 2 0 0 0
.................................CGACCAAAGTACAGCTTCTAACC..................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0
............................................................................................................................................CTGTCCATGCCCTATCCA............................................................................................................... 18 1 1 1.00 1 1 0 0 0 0
...TACAAAGTGTACCTCCAAG....................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................GCTGTCCATGCCCTATCCACA............................................................................................................. 21 3 1 1.00 1 1 0 0 0 0
...........................................................................................................................................GCTGTCCATGCCCTATCCA............................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
................................................................................................................................AGGCCGCAAACGCTGTCCATGCCCTATC................................................................................................................. 28 1 1 1.00 1 0 0 0 1 0
................................................................................................................................................................................................................................GAACAAGAAGAGAGCAGTGATACAAGCC................. 28 0 1 1.00 1 1 0 0 0 0
...............................................................AATATTGGAAGCTGCAGCAACAACAGCA.................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
..........................................................GATATAATATTGGAAGCTGCAGC............................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
..........................................TACAGCTTCTAACCGTGATA............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1
...........................................................................................................................................GCTGTCCATGCCCTATCCAC.............................................................................................................. 20 2 1 1.00 1 1 0 0 0 0
...........................................................................................................................................GCTGTCCATGCCCTATCC................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0
.......................................................................................AGCAGCGATAGTGCCAGA.................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
..............................................................................AGCAAGAACAGCAGCGATGGT.......................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0
............................................................................................................................................CTGTCCATGCCCTATCCACGGG........................................................................................................... 22 3 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................CTGTTCTTTCTCTTTCAAAAA...................................................................... 21 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GAGATGTTTCACATGGAGGTTCGTCAAATTTTTGCTGGTTTCATGTCGAAGATTGGCACTATATTATAACCTTCGACGTCGTTGTTGTCGTCGCTATCACGGTCTCGGGAGAGTCAGGGTTTTGAGACTTCGGCGTTTGCGACAGGTACGGGATAGCTTGCCAATCGGGATATGTTTAGACAAGAAAGAGTAAGATTCTTTAGAAAACGAAGTTAAATCTAGCTCTTGTTCTTCTCTCGTCACTATGTTCGGCGTTATAAACCGTACCG
**************************************************((((((((((((......((((.(((((..........)))))....((..(((((.................)))))..)).((....))..)))).....))))..)))))))).......((((....(((((.........)))))....))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 M022
male body		 M059
embryo
.....................................................................................................................................................................CGGGATATGTTTAGACAAGAAAGAGT.............................................................................. 26 0 1 1.00 1 1 0 0 0
.........................................................................................................................................AGCCACAGGTACGGGATAG................................................................................................................. 19 2 2 0.50 1 0 1 0 0
.............................................................................................................................................................TTGCCAATCAGGATAAGTTG............................................................................................ 20 3 3 0.33 1 0 1 0 0
......................................................................................................TCTCGGGATAGTCGGGGCTT................................................................................................................................................... 20 3 10 0.10 1 0 0 1 0
..............GGAGATTCGTCAAAGTTT............................................................................................................................................................................................................................................. 18 2 20 0.10 2 0 1 0 1
......................................................................................................................................................................................................................................................GTTCGACGTTATATACAGTA... 20 3 11 0.09 1 0 1 0 0
.........................................................................................................CGGCAGAGTCAGGGT..................................................................................................................................................... 15 1 18 0.06 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:10401265-10401533 - dps_2784 CT------CTACAAAGTGTACCTCCAAGC---AGTTT---AAAAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---AATATTGGAAGCTGCAGCAACAACA-GCA----GCGATAGTGC--C--AGAGCCCT---------CTCAG---TCC--------------CAAAACTC--------TGAAGCCGCAAACGCT---GTCCATGCCCT---------ATCGAACGGTTAGCCCT----------------------ATACA--------------------------------------------AATCT---------GTT-----CTTTCTCATTCTAAGAAAT--C-T----------------TTTG----------------------CTTCAATTTAGATCGAG---------------AACAAGAAGAGAGCAGTGATACAAGCCGCAATATTT---GGCA------TGGC
droPer2 scaffold_69:118610-118880 + CT------CTACAAAGTGTACCTCCAAGC---AGTTT---AAAAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---AATATTGGAAGCAGCAGCAACAACA-GCA----GCGATAGTGC--C--AGAGCCCT---------CTCAG---TCC--------------CAAAACTC--------TGAAGCCGCAAACGCT---GTCCATGCCCT---------ATCGAACGGTTAGCCCT----------------------ATACA--------------------------------------------AATCT---------GTT-----CTTTCTCATTCTAAGAAAT--C-TTT--------------TTTG----------------------CTTCAATTTAGATCGAG---------------AACAAGAAGAGAGAAGTGATACAAGCCGCACTCTTT---GGCA------TGGC
droWil2 scf2_1100000004909:6547337-6547637 + CG------CTACCAATA---TTACCTCAGAGTTTTAT---AATAATGACCAAAGTACCAAA------GCTTCTAGCCATGATGATATATTATTATTT---GAAGCAACATCA-CAA----TCAATAAGCC--A--AGAGTTGGCCAACAGTTTGCAA---CAAATGGATTCAGTTTCCCAAACTC--------CAGGACCACAATCACA---ACCACAACC-----------ATCAATCGA---------------CTCAAGTG---------------------------AAATGATGCCGAGC-AGCGAGACGG-----------------------------------------------------------------CGATGGCTGCAGATCATGGTCCTTCTTCTTCTTTTAA--------------------CAAACAACAAACAACAAGTGATATAAGCCATTCCCTAT---GGCA------TGGC
droVir3 scaffold_12472:253876-254173 - dvi_1027 ACAAAATGGGTCAACAAGTTTGTTAACTG---AATTA---AAGAATGAACAAAGTACTTCT------TCAGTTCAATGTGATAT---ATTAAATGCG---GGTTCCC-CATCCATAAATGGC-A-AGATCACC--A----------------TTCAG---CGTATGGATTCCGAACC-----CATTGATTTTG-CAAT-------A-------CATACCCCTTGT--GATTCGCCAAATGGTTAGTTAATC--ACT-----T---------AGATA--------------------------------------------AGTTA---------GAT-----GAATCTCATTGTA------AAC------TTGAAT----------TCTT--------------------------CATATTTAGATCATGCTCCATCCATTTGTGAAAGCTTTAGTGATAATAGCCGGACTCTGC---GTCA------GGGC
droMoj3 scaffold_6308:3226498-3226797 + CG------CC--AAAT----TGTTAACTG---AATTCAAAAACAATGACCAAAGCACTACA------GCAGTTCAACGTGATAC---ATTGAGCGAG---AGTTCTG-CATCCATAAATGGC-A-AGATCACC--A----------------TTCAG---CGCATGGACTCCAAGCC-----CATTGACTTAG-CAAT-------A-------CATACCCCTTGT--GATTCCCCAAACGGTTTGTTAATT--AGC-----------------------------TA-------------AA------------------AGTCAGTTGCCTTATCTAT---------------A------AATGATTAATTGAAATTTTCGA----------------------------------ATATTTAGACTATGCTCCCTCCATCTGTGAAAGCTTTAGTGATAAGAGTCAGACTCTGT---GTCAGAGTGGTGGC
droGri2 scaffold_15203:4730476-4730762 + TT------CCACAAGTT---TGTTATCTG---AGCAA---AAGATTGAACAGACTCCTTCT------TTAGTTCAATGTGATAT---ATTAAATGAC---GGGTCCT-TATCCCATAATGGCAA--AATCACT--ATAATGCG---------CATGG---ATG-------CCAAGCT-----CAATGAGCTCG-TAGA-------A-------CTTACGCATTGT--GATTCCCCAAACGGTTAGTTTTACC---T-----T---------ATACG--------------------------------------------CTTTC---------TA------GCAACTAATT-TA------AAC------TTGAAC-TTTCAA----------------------------------TCATTTAGATCAGGCTCCCTCCAATTTTGAAAGCATTAGTGATAATAGCCGGACGGTTC---GTCA------GGGC
droAna3 scaffold_13137:1163381-1163444 - CC------CTGAAAATAA---ATTATGTA---AATCC---TATAACGACCAAACTAA---A------GCTTCGAAACGTGATAT---ATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000393699:62131-62217 + CC------TTGAAAATA---CTTTTTCTG---AAACT---CAGAACGACCAAAGTAA---A------GCTTCAAAACGTGATAT---AATAAATGTA---GCACCAC-CATT-GCCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302696:1035704-1035970 + CC------CAGCAGATAATAGCATTCCAC---AGTTC---TATAGCGACCAAAGTATACCAGCAGCCCCTTCTGCCCGTGATAA---ATTGGATAAG---GAAGCAG---------------------------------------------CGCAG---CAA--------------CCGATCCC-----TCCTGGATCCGACCGATCCACAGTCCACA-----------------CA--------------------------------------GCCTTAGGTAAGCTAAAACTACCAACTCCTTGCTCAAATATCAC-----------------------------ATTTATGGACCA--ATTTT--------------ACTGCTTA--------------------------CAGATCGGCAGCCAGCTCCTCCAAAATCAGAAGGCTCTGACCAT---------GCCCTGTTGTGGCA------TGGA
droFic1 scf7180000453495:467795-468091 + CC------TT--GAATAATCCCATTCCAG---AGTTC---CATAACGACCAAAGTAC---T------GCTTCTAACCGTGATAT---ATTGGAAGTG---GAATCAC-AATT-GCCAAC-GCAA-AGTTC--CTTGGTGTCCA---------CACAA---CAA--------------CCGATCCC--------CGGATCCGTTCGAAAT---GTCCACGTTTTGAGTTACTCTGAAAACGGTAAGCGGTTCTATAT-----T---------AGAAA--------------------------------------------ACTCC---------GTT-----TATAC-CACT--T------A---------------------GTGTTT-------------GTTGTTCTTTTCTTTAGATCAAAATCCAGTTCCTTCAAAACCTGAAGACACAAGTGATATTTGTCGCACTTTGT---GGCA------TGGC
droEle1 scf7180000491182:83865-84050 - CC------CTGCAAAAAATCCCACTCTTG---AGTTC---CATAACGACCAAAGTAC---T------GCTTCTAACCGTAACAT---ATTGGAAGTA---GATTCAC-AATT-GCAGTT-GCGA-AGTTC--CATGGTGTCCT---------CACAG---CAA--------------ATGATCCC--------TGCACCCGGACGATCT---GTCCAGGTCTTGGTTTATTCTGAAAACGGTAAGCTATTC------------------------A--------------------------------------------AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
droRho1 scf7180000778073:102-238 - TGGGC---TTTCAAATAAACCCGTTCTAG---AGTTC---CATAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTA---GAATCAC-AATT-GCTATT-GCGC-AGTTC--CATGGTGTCCT---------CACAG---CAA--------------CCGATCCC--------TGGACCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302126:810781-811083 - CC------GTTCAAATAATCCCATTCCAG---AGTTC---CACAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTA---GAATCAC-AAGC-GCAAAG-GCGG-AGTTC--CTTGGTGTCCA---------TGCAGCAGCAG--------------CAGATCCC--------TGGATCCGGACGACCC---GTCCACGTTTTGGATCAGTCAGAAAATGGTAAGTGATAAT-A-------TTGCAATCCA-----GGCCAAGGCAA----------------------------------------GAACTAACCTTGAAA-------------------C--TCTT--------------TTTGTTTT--------------------------CAGATCAACATCCAGTTCCTTCAAAATCCGAAGACACCAGTGATATTTGTCGCGCTTTGT---GGCA------TGGC
droTak1 scf7180000415289:257033-257307 + TT---------CAAATAATCCCATTCCCG---AGTTC---CATGGCGACCAAAGTACAGCA------GCTGCTAACCGTGATAT---ATTGCAAGTG---GAATCAC-AATC-GCAAAG-GCCA-AGTTC--CTTGGTCTCCT---------CA-------------------------------------------ACCGGGCGAGCT---GT------TTTGGCTCACTCTGAAAACGGTAAGGGGTTCT-AGAGTCTAGTT---------------------------TTGAGATGGGAAGC-AACTCAACTATCAC-----------------------------------------------------TAC----------TTTT--------------------------CAGATCAAAATCCAGTTCCTTTAAAATCTGAAGACACAAGTGATATTTGTCGCACTCTGTGGGGGAA------TGGC
droEug1 scf7180000409008:1415124-1415427 - CC------TTTCAAAAAATCCCATTCCAG---AGTTC---CACAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTAGAAGTA---GCATCAC-AATC-GCAAAG-ACGT-AGTTC--CTTGGTGTCCT---------CACAG---CAA--------------CAGATCAC--------TGGATCCGAGCGATCT---GTCCACGTTTTGGATCAATCCGAAAACGGTAAGAGATTCT-A-------TTG---------------------------AAATTATCATCATTTAAAACAAAAATGAA-----------------------------A--------------------TTCAACTTGTACAATGTTTC--------------------------CAGATCAAAATCCAGTTCCTTCAAAATCTGAAGACACAAGTGATATTTGTCGCGCTTTGT---GGCA------TGGC
dm3 chrX:16194584-16194698 + CC------GTTCAAATAATCCCATTCCAG---ATTTC---CATAACGACCAAAGTAC---A------GCTTCTAAACGTGATAT---ATTGGAAGTG---GAATCAC-AAAC-GCAAAG-GCGA-AGTTC--CTTGGAGTCCT---------CACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:15314297-15314380 + CC------GTTCAAATAATCCCATTCCAG---ATTTC---CATAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTG---GAATCAC-AAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_17:21316-21399 + CC------GTTCAAATAATCCCATTCCAG---ATTTC---CATAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTG---GAATCAC-AAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrX_random_001:37614-37902 + CC------GTTCAAATAATCCCATTCCAG---AGTTT---CATAACGACCAAAGCAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTG---GAAACAC-AATC-GCAAAG-GCGA-AGTTC--CTTGGAGTTCT---------CACAT---CAA--------------CAGATACC--------TGGATCCGGGCGACCT---GTCTTCATTTTCGGTTCATCCGAAAACGGTAAGTGATATT-AGC-----------------------------AA-------------GA----AA-----------------GAGAACTTAACTTAACT-------------------A--TCGT--------------AATGGTTT--------------------------CAGATCCAAATCCAGTTCCTTCAAAATCTGAAGACACAAGTGATATTTGTCGCGCCCTAT---GGCA------TGGC
droEre2 scaffold_4690:10892952-10893244 - CC------GTTCAAATAATCCCATTCCAG---AGTTC---CATAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTA---GAAACAC-AATC-GCAAAG-GCGA-AGTTC--CTTGGTGTCCT---------CAAAT---CAA--------------CTGATCCC--------TGGATCCGGGCGACCT---GTTTTCGTTTTCGGCTCATCCGAAAACGGTAAGAGATGTT-AGC-----------------------------AT-------------GAAGC-AA-----------------GTGAACTTAACCTAATT-------------------A--GCTTA-------------TTTGGTTT--------------------------TAGATCAAAATCCAGTTCCTTCAAAATCTGAAGACACAAGTGATATTTGTCGCGCCCTGT---GGCA------TGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CT------CTACAAAGTGTACCTCCAAGC---AGTTT---AAAAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---AATATTGGAAGCTGCAGCAACAACA-GCA----GCGATAGTGC--C--AGAGCCCT---------CTCAG---TCC--------------CAAAACTC--------TGAAGCCGCAAACGCT---GTCCATGCCCT---------ATCGAACGGTTAGCCCT----------------------ATACA--------------------------------------------AATCT---------GTT-----CTTTCTCATTCTAAGAAAT--C-T----------------TTTG----------------------CTTCAATTTAGATCGAG---------------AACAAGAAGAGAGCAGTGATACAAGCCGCAATATTT---GGCA------TGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCGAG---------------AACAAGAAGAGAGCAG.....................................2512.0020000000020
.............................................CGACCAAAGTAC---A------GCTTCTAACC................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.........TACAAAGTGTACCTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------AACAAGAAGAGAGCAGTGATACAAGCC..........................2811.0010100000000
.......................................................................................AATATTGGAAGCTGCAGCAACAACA-GCA----.....................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
...............................................................................GATAT---AATATTGGAAGCTGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
......................................................TAC---A------GCTTCTAACCGTGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
..............................................................................................................................................................................................................GCT---GTCCATGCCCT---------ATCC.................................................................................................................................................................................................................................................................1811.0010100000000
...............................................................................................................A-GCA----GCGATAGTGC--C--AGA...................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
droPer2
CT------CTACAAAGTGTACCTCCAAGC---AGTTT---AAAAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---AATATTGGAAGCAGCAGCAACAACA-GCA----GCGATAGTGC--C--AGAGCCCT---------CTCAG---TCC--------------CAAAACTC--------TGAAGCCGCAAACGCT---GTCCATGCCCT---------ATCGAACGGTTAGCCCT----------------------ATACA--------------------------------------------AATCT---------GTT-----CTTTCTCATTCTAAGAAAT--C-TTT--------------TTTG----------------------CTTCAATTTAGATCGAG---------------AACAAGAAGAGAGAAGTGATACAAGCCGCACTCTTT---GGCA------TGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CGAG---------------AACAAGAAGAGAGAA......................................1911.001100000
............................................................................................................................................................G---TCC--------------CAAAACTC--------TGAAGCC.....................................................................................................................................................................................................................................................................................................1911.001100000
........................................................................................ATATTGGAAGCAGCAGCAAC.................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droWil2
CG------CTACCAATA---TTACCTCAGAGTTTTAT---AATAATGACCAAAGTACCAAA------GCTTCTAGCCATGATGATATATTATTATTT---GAAGCAACATCA-CAA----TCAATAAGCC--A--AGAGTTGGCCAACAGTTTGCAA---CAAATGGATTCAGTTTCCCAAACTC--------CAGGACCACAATCACA---ACCACAACC-----------ATCAATCGA---------------CTCAAGTG---------------------------AAATGATGCCGAGC-AGCGAGACGG-----------------------------------------------------------------CGATGGCTGCAGATCATGGTCCTTCTTCTTCTTTTAA--------------------CAAACAACAAACAACAAGTGATATAAGCCATTCCCTAT---GGCA------TGGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................AAGTG---------------------------AAATGATGCCGAGC-AGCGAGAC...................................................................................................................................................................................2711.00100010
............................................................................................................................................TGGCCAACAGTTTGCAA---CAAATGGA.....................................................................................................................................................................................................................................................................................................................................2511.00101000
.............................................................................................................................................................................TTTCCCAAACTC--------CAGGACC.....................................................................................................................................................................................................................................................................................................1911.00101000
...........................................................................................................................................................................................................................................AATCGA---------------CTCAAGTG---------------------------AAATGATGCCGA..............................................................................................................................................................................................2611.00100100
.......................................................................................................................................................................................................................................................................G---------------------------AAATGATGCCGAGC-AGCGAGA....................................................................................................................................................................................2211.00100100
..................................................................................................................................................................................................................................................................................................................AGCGAGACGG-----------------------------------------------------------------CGATGGCTGCAGATCAT...............................................................................................2711.00100010
..................................................................................................................................................................................................................................................................................................................AGCGAGACGG-----------------------------------------------------------------CGATGGCTGCAGATCATG..............................................................................................2811.00100100
..................................................................................................................AA----TCAATAAGCC--A--AGAGTTGGCC............................................................................................................................................................................................................................................................................................................................................................2311.00100010
.....................................................GTACCAAA------GCTTCTAGCCATGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
............................................................................................TATTT---GAAGCAACATCA-CAA----TCAATA...............................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..................................................................................................................................................................................................................................................................CAAGTG---------------------------AAATGATGCCGAGC-AGCG.......................................................................................................................................................................................2411.00100100
......................................................................................................................................................................................................................................................................TG---------------------------AAATGATGCCGAGC-AGCGAGAC...................................................................................................................................................................................2411.00101000
..............................................................................................................................................................................................................................................CGA---------------CTCAAGTG---------------------------AAATGATGCCGAGC-...........................................................................................................................................................................................2511.00101000
.......................................................................................................................................................................................................................................................................................................GATGCCGAGC-AGCGAGACGG-----------------------------------------------------------------CGATGGC.........................................................................................................2711.00100010
.............................................................................................................................................................................................................CACA---ACCACAACC-----------ATCAATCGA---------------CT...........................................................................................................................................................................................................................................2411.00101000
....................................................................................................................................A--AGAGTTGGCCAACAGTTTGC..................................................................................................................................................................................................................................................................................................................................................2111.00100010
................................................................................................................................................................................................................A---ACCACAACC-----------ATCAATCGA---------------CTC..........................................................................................................................................................................................................................................2211.00101000
..................................................................................................................................................................................................................................................................CAAGTG---------------------------AAATGATGCCGAGC-AGC........................................................................................................................................................................................2311.00100100
droVir3
ACAAAATGGGTCAACAAGTTTGTTAACTG---AATTA---AAGAATGAACAAAGTACTTCT------TCAGTTCAATGTGATAT---ATTAAATGCG---GGTTCCC-CATCCATAAATGGC-A-AGATCACC--A----------------TTCAG---CGTATGGATTCCGAACC-----CATTGATTTTG-CAAT-------A-------CATACCCCTTGT--GATTCGCCAAATGGTTAGTTAATC--ACT-----T---------AGATA--------------------------------------------AGTTA---------GAT-----GAATCTCATTGTA------AAC------TTGAAT----------TCTT--------------------------CATATTTAGATCATGCTCCATCCATTTGTGAAAGCTTTAGTGATAATAGCCGGACTCTGC---GTCA------GGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGCCGGACTCTGC---GTC...........2111.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATAGCCGGACTCTGC---GTCA------G...2411.001000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TTG-CAAT-------A-------CATACCCCTTGT--GATTCGCC..................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................ATGGC-A-AGATCACC--A----------------TTCAG---C............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................AAT-------A-------CATACCCCTTGT--GATTCGCCAAAT..............................................................................................................................................................................................................................................................2811.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGATAATAGCCGGACTCTGC---GTC...........2711.001000000000000000000000000100000000000000000000000000000000000000
droMoj3
CG------CC--AAAT----TGTTAACTG---AATTCAAAAACAATGACCAAAGCACTACA------GCAGTTCAACGTGATAC---ATTGAGCGAG---AGTTCTG-CATCCATAAATGGC-A-AGATCACC--A----------------TTCAG---CGCATGGACTCCAAGCC-----CATTGACTTAG-CAAT-------A-------CATACCCCTTGT--GATTCCCCAAACGGTTTGTTAATT--AGC-----------------------------TA-------------AA------------------AGTCAGTTGCCTTATCTAT---------------A------AATGATTAATTGAAATTTTCGA----------------------------------ATATTTAGACTATGCTCCCTCCATCTGTGAAAGCTTTAGTGATAAGAGTCAGACTCTGT---GTCAGAGTGGTGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................GTGATAC---ATTGAGCGAG---AGTTCTG-.................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droGri2
TT------CCACAAGTT---TGTTATCTG---AGCAA---AAGATTGAACAGACTCCTTCT------TTAGTTCAATGTGATAT---ATTAAATGAC---GGGTCCT-TATCCCATAATGGCAA--AATCACT--ATAATGCG---------CATGG---ATG-------CCAAGCT-----CAATGAGCTCG-TAGA-------A-------CTTACGCATTGT--GATTCCCCAAACGGTTAGTTTTACC---T-----T---------ATACG--------------------------------------------CTTTC---------TA------GCAACTAATT-TA------AAC------TTGAAC-TTTCAA----------------------------------TCATTTAGATCAGGCTCCCTCCAATTTTGAAAGCATTAGTGATAATAGCCGGACGGTTC---GTCA------GGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CC------CTGAAAATAA---ATTATGTA---AATCC---TATAACGACCAAACTAA---A------GCTTCGAAACGTGATAT---ATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................TATGTA---AATCC---TATAACGACCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droBip1
CC------TTGAAAATA---CTTTTTCTG---AAACT---CAGAACGACCAAAGTAA---A------GCTTCAAAACGTGATAT---AATAAATGTA---GCACCAC-CATT-GCCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CC------CAGCAGATAATAGCATTCCAC---AGTTC---TATAGCGACCAAAGTATACCAGCAGCCCCTTCTGCCCGTGATAA---ATTGGATAAG---GAAGCAG---------------------------------------------CGCAG---CAA--------------CCGATCCC-----TCCTGGATCCGACCGATCCACAGTCCACA-----------------CA--------------------------------------GCCTTAGGTAAGCTAAAACTACCAACTCCTTGCTCAAATATCAC-----------------------------ATTTATGGACCA--ATTTT--------------ACTGCTTA--------------------------CAGATCGGCAGCCAGCTCCTCCAAAATCAGAAGGCTCTGACCAT---------GCCCTGTTGTGGCA------TGGASizeHit CountTotal NormTotal
No Reads
droFic1
CC------TT--GAATAATCCCATTCCAG---AGTTC---CATAACGACCAAAGTAC---T------GCTTCTAACCGTGATAT---ATTGGAAGTG---GAATCAC-AATT-GCCAAC-GCAA-AGTTC--CTTGGTGTCCA---------CACAA---CAA--------------CCGATCCC--------CGGATCCGTTCGAAAT---GTCCACGTTTTGAGTTACTCTGAAAACGGTAAGCGGTTCTATAT-----T---------AGAAA--------------------------------------------ACTCC---------GTT-----TATAC-CACT--T------A---------------------GTGTTT-------------GTTGTTCTTTTCTTTAGATCAAAATCCAGTTCCTTCAAAACCTGAAGACACAAGTGATATTTGTCGCACTTTGT---GGCA------TGGCSizeHit CountTotal NormTotal
No Reads
droEle1
CC------CTGCAAAAAATCCCACTCTTG---AGTTC---CATAACGACCAAAGTAC---T------GCTTCTAACCGTAACAT---ATTGGAAGTA---GATTCAC-AATT-GCAGTT-GCGA-AGTTC--CATGGTGTCCT---------CACAG---CAA--------------ATGATCCC--------TGCACCCGGACGATCT---GTCCAGGTCTTGGTTTATTCTGAAAACGGTAAGCTATTC------------------------A--------------------------------------------AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droRho1
TGGGC---TTTCAAATAAACCCGTTCTAG---AGTTC---CATAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTA---GAATCAC-AATT-GCTATT-GCGC-AGTTC--CATGGTGTCCT---------CACAG---CAA--------------CCGATCCC--------TGGACCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CC------GTTCAAATAATCCCATTCCAG---AGTTC---CACAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTA---GAATCAC-AAGC-GCAAAG-GCGG-AGTTC--CTTGGTGTCCA---------TGCAGCAGCAG--------------CAGATCCC--------TGGATCCGGACGACCC---GTCCACGTTTTGGATCAGTCAGAAAATGGTAAGTGATAAT-A-------TTGCAATCCA-----GGCCAAGGCAA----------------------------------------GAACTAACCTTGAAA-------------------C--TCTT--------------TTTGTTTT--------------------------CAGATCAACATCCAGTTCCTTCAAAATCCGAAGACACCAGTGATATTTGTCGCGCTTTGT---GGCA------TGGCSizeHit CountTotal NormTotal
No Reads
droTak1
TT---------CAAATAATCCCATTCCCG---AGTTC---CATGGCGACCAAAGTACAGCA------GCTGCTAACCGTGATAT---ATTGCAAGTG---GAATCAC-AATC-GCAAAG-GCCA-AGTTC--CTTGGTCTCCT---------CA-------------------------------------------ACCGGGCGAGCT---GT------TTTGGCTCACTCTGAAAACGGTAAGGGGTTCT-AGAGTCTAGTT---------------------------TTGAGATGGGAAGC-AACTCAACTATCAC-----------------------------------------------------TAC----------TTTT--------------------------CAGATCAAAATCCAGTTCCTTTAAAATCTGAAGACACAAGTGATATTTGTCGCACTCTGTGGGGGAA------TGGCSizeHit CountTotal NormTotal
No Reads
droEug1
CC------TTTCAAAAAATCCCATTCCAG---AGTTC---CACAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTAGAAGTA---GCATCAC-AATC-GCAAAG-ACGT-AGTTC--CTTGGTGTCCT---------CACAG---CAA--------------CAGATCAC--------TGGATCCGAGCGATCT---GTCCACGTTTTGGATCAATCCGAAAACGGTAAGAGATTCT-A-------TTG---------------------------AAATTATCATCATTTAAAACAAAAATGAA-----------------------------A--------------------TTCAACTTGTACAATGTTTC--------------------------CAGATCAAAATCCAGTTCCTTCAAAATCTGAAGACACAAGTGATATTTGTCGCGCTTTGT---GGCA------TGGCSizeHit CountTotal NormTotal
No Reads
dm3
CC------GTTCAAATAATCCCATTCCAG---ATTTC---CATAACGACCAAAGTAC---A------GCTTCTAAACGTGATAT---ATTGGAAGTG---GAATCAC-AAAC-GCAAAG-GCGA-AGTTC--CTTGGAGTCCT---------CACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................AT---ATTGGAAGTG---GAATCAC-AAAC-GC..........................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATTGGAAGTG---GAATCAC-AAAC-GC..........................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................AAAC-GCAAAG-GCGA-AGTTC--CTTGGA...................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GATAT---ATTGGAAGTG---GAATCAC-.................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
......................................................TAC---A------GCTTCTAAACGTGATAT---ATTGGA................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................................................ATTGGAAGTG---GAATCAC-A................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.........................................................................................TGGAAGTG---GAATCAC-AAAC-GCAAAG-GCGA-TC..............................................................................................................................................................................................................................................................................................................................................................................3111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TAT---ATTGGAAGTG---GAATCAC-AAAC-G...........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AC---A------GCTTCTAAACGTGATAT---......................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.C------GTTCAAATAATCCCATTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................GAAGTG---GAATCAC-AAAC-GCAAAG-GC...................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGTG---GAATCAC-AAAC-GCAAAG-G....................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GTGATAT---ATTGGAAGTG---GAATCAC-A................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AACGTGATAT---ATTGGAAGTG---G........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AAAG-GCGA-AGTTC--CTTGGAGTCCT---------C....................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................ACGTGATAT---ATTGGAAGTG---GAATCAC-A................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TC---CATAACGACCAAAGTAC---A------GCTTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TAACGACCAAAGTAC---A------GCTTCTAAACG...............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GCAAAG-GCGA-AGTTC--CTTGGA...................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AT---ATTGGAAGTG---GAATCA...................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................C-GCAAAG-GCGA-AGTTC--CTTGGA...................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GCGA-AGTTC--CTTGGAGTCCT---------CACA.................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATAATCCCATTCCAG---ATTTC---CATAACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGTG---GAATCAC-AAAC-GCAAAG-GCGA-A...............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................AGTG---GAATCAC-AAAC-GCAAAG-GCGA-AGT.............................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TAC---A------GCTTCTAAACGTGATAT---ATTG..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................................GACCAAAGTAC---A------GCTTCTAAACGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................C-AAAC-GCAAAG-GCGA-AGTTC--.........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGTG---GAATCAC-AAAC-GCAAAG-GCG..................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ATAACGACCAAAGTAC---A------GCTTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CATAACGACCAAAGTAC---A------CGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
droSim2
CC------GTTCAAATAATCCCATTCCAG---ATTTC---CATAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTG---GAATCAC-AAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................AGTAC---A------GCTTCTAACCGTGATAT---ATTG..................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.......................................................................................ATTGGAAGTG---GAATCAC-AA...............................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
.......................................................................CTAACCGTGATAT---ATTGGAAGTG---GA.......................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...................................................................................T---ATTGGAAGTG---GAAT.....................................................................................................................................................................................................................................................................................................................................................................................................1550.60300000000003000000
...................................................................................T---ATTGGAAGTG---GAAA.....................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
CC------GTTCAAATAATCCCATTCCAG---ATTTC---CATAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTG---GAATCAC-AAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................ATAACGACCAAAGTAC---A------GCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
............................................................................CGTGATAT---ATTGGAAGTG---G........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
CC------GTTCAAATAATCCCATTCCAG---AGTTT---CATAACGACCAAAGCAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTG---GAAACAC-AATC-GCAAAG-GCGA-AGTTC--CTTGGAGTTCT---------CACAT---CAA--------------CAGATACC--------TGGATCCGGGCGACCT---GTCTTCATTTTCGGTTCATCCGAAAACGGTAAGTGATATT-AGC-----------------------------AA-------------GA----AA-----------------GAGAACTTAACTTAACT-------------------A--TCGT--------------AATGGTTT--------------------------CAGATCCAAATCCAGTTCCTTCAAAATCTGAAGACACAAGTGATATTTGTCGCGCCCTAT---GGCA------TGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................C-GCAAAG-GCGA-AGTTC--CTTG.....................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............................................................................GTGATAT---ATTGGAAGTG---GAAACAC-.................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
....................................T---CATAACGACCAAAGCAC---A------G.........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................................ATAACGACCAAAGCAC---A------GCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................................................................................................................CAA--------------CAGATACC--------TGGATCCGGGC.................................................................................................................................................................................................................................................................................................2211.00101000000000
.......................................................AC---A------GCTTCTAACCGTGATAT---ATTGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
........................................................................................................CAC-AATC-GCAAAG-GCGA-AGTTC--CTTG.....................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...............................................................................GATAT---ATTGGAAGTG---GAAACA...................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................................ATACC--------TGGATCCGGGCGACCT---.........................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAATCCAGTTCCTTCAAAATCTGA..............................................2811.00101000000000
droEre2
CC------GTTCAAATAATCCCATTCCAG---AGTTC---CATAACGACCAAAGTAC---A------GCTTCTAACCGTGATAT---ATTGGAAGTA---GAAACAC-AATC-GCAAAG-GCGA-AGTTC--CTTGGTGTCCT---------CAAAT---CAA--------------CTGATCCC--------TGGATCCGGGCGACCT---GTTTTCGTTTTCGGCTCATCCGAAAACGGTAAGAGATGTT-AGC-----------------------------AT-------------GAAGC-AA-----------------GTGAACTTAACCTAATT-------------------A--GCTTA-------------TTTGGTTT--------------------------TAGATCAAAATCCAGTTCCTTCAAAATCTGAAGACACAAGTGATATTTGTCGCGCCCTGT---GGCA------TGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................CTAACCGTGATAT---ATTGGAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
................................................................................................................................................................CAA--------------CTGATCCC--------TGGATCCGGGC.................................................................................................................................................................................................................................................................................................2211.0011000000
...................................................................................................................................................................................GATCCC--------TGGATCCGGGCGACC.............................................................................................................................................................................................................................................................................................2111.0011000000
..............ATAATCCCATTCCAG---AGTTC---CAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
......................................................................................................................................................................................CCC--------TGGATCCGGGCGACCT---GT.......................................................................................................................................................................................................................................................................................2111.0010100000
...........................................................................................................................................................AT---CAA--------------CTGATCCC--------TGGATCCGGGC.................................................................................................................................................................................................................................................................................................2411.0010000010
.................................................................................................................................................................................CTGATCCC--------TGGATCCGGGCGACCT---.........................................................................................................................................................................................................................................................................................2411.0010100000

Generated: 05/18/2015 at 05:26 AM