ID:

dps_2762

 Coordinate:

XL_group1e:8952259-8952555 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-52.4 -52.1 -51.9 -51.8

Flybase annnotation

exon [dpse_GLEANR_188:13]; exon [dpse_GLEANR_188:12]; CDS [Dpse\GA25711-cds]; CDS [Dpse\GA25711-cds]; intron [Dpse\GA25711-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGGGCCACACGACTACTCGGCCAACGGGGGCTGCACCACACACGGACATGGCCACGGCCATGGCCATGGCGGCGGTGCCCATGGCGGTCACGATCTGGCCGCCATCAACTACAACCACCACAATCGCCATCACCAGCAGCAGCTGCTCAAGGGATCCGTTGTGGTTGTCGGCGTTGGCGGTAATGGTGCCGCCGCTGCCGAGACAACCACCACAACGACAACCACCACCACGGTGCTGCGTCGCCTCGGCTCGGGAACAGCATTGGGATCGGTTTCGGGCTCGGCAACGGGTACGGGTACGGGTACGGGCGGTGTGCCTAGCGATCCGAATGTGGTGGCATTGCCAGGCGGCGGCTCTGTTTCCAGCAACAGCAGCAGCGGCGGCAACGGCGGCTCC
*******************************************************************************************************************************..((....((((((.(((......((...(((((((((((((((((.((((((((....)))))))).))))..))))...)))))))))....)).......))))))))).............))*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 V112
male body		 GSM444067
head
 GSM343916
embryo
 SRR902012
CNS imaginal disc
.................CGGCCAACGGGGGCTGCACCACAC.................................................................................................................................................................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................GAAGGGCTCCGATGTGGTTGTC.................................................................................................................................................................................................................................... 22 3 2 1.50 3 1 0 2 0 0 0
..........................................................................................................................................................................................................................................GCTGCGTCGCCTCGGCTCGG............................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................CGGGTACGGGTACGGGAGGTGTG................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................ACGGGTACGGGAGGTGTG................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GGGTAGGGGCGCTGTGCCTA............................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................CATCACCAGCAGCAGCTGCTC......................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TACGGGTACGGGAGGTGTGC................................................................................ 20 1 1 1.00 1 0 0 1 0 0 0
..........GACTACTCGGCCAACGGGGGCTGCACC........................................................................................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................CTGAAGGGCTCCGATGTGGTTGT..................................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................CCTCGGCTCGGGAACAGCATTGGGATC............................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................ACGGGTACGGGTACGGGAGGTGTGC................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0
.................CGGCCAACGGGGGCTGCACCAC...................................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................TTGTGGTTGTCGGCGTTGGCGGT........................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GGTACGGGAGGTGTGCCTAGCGATCCG..................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................GATCCGTTGTGGTTGTCGGCGTTGGC........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................CTGAAGGGATCCGATGTGGTGGT..................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 1 0
..........................................................CATGGCCATGGCGGCGGTGCCCATGGC........................................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
......ACACGTCTACTCTGACAACGGG................................................................................................................................................................................................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0
..........GACTACTCGGCCAACGGGGGCTGCAC......................................................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................CGGTGTGCCTAGCGATCCGAATGTGGT............................................................. 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ACGGGTACGGGTACGGGAGGTGTG................................................................................. 24 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................AACGACAACCACCACCACGGTGCT................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................CAGCTGCTCAAGGGATCCGTT............................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................CCGTTGTGGTTGTCGGCGTTGGC........................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0
..........GACTACTCGGCCAACGGGGGCTG............................................................................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCTGCGGCAACGGCGGTT.. 23 2 2 1.00 2 2 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................GCCTAGCGATCCGAATGTGGTGG........................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................GTCGCCTCGGCTCGGGAACA.......................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.........................GGGGGCTGCACCACACACGGAC.............................................................................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................TGAAGGGCTCCGATGTGGTTGTC.................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0
......ACACGACTACTCGGCCAACGGGGGCT............................................................................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................CTAGCGATCCGAATGTGGT............................................................. 19 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................GTACGGGCGGTGTGCCTAGCG.......................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................GACAACCACCACAACGACAACCACC........................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................GTTGTCGGCGTTGGCGGT........................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1
...........................................................ATGACCATGGCGGCGGTGCT.............................................................................................................................................................................................................................................................................................................................. 20 2 3 0.33 1 0 0 1 0 0 0
....................................................................................................................................................AAGGGCTCCGATGTGGTTG...................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................ACGGGTACGGGTACGGGTACGGGC....................................................................................... 24 0 6 0.17 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................GGATCGGTTTCGGGCTGGA................................................................................................................. 19 2 7 0.14 1 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................................ACGGGTACGGGTACGGGTACGGGCT...................................................................................... 25 1 7 0.14 1 0 0 1 0 0 0
............................................................................................................................CGTCTTCACCAGCAGCACCTGC........................................................................................................................................................................................................................................................... 22 3 8 0.13 1 1 0 0 0 0 0
..........................................................................................CGTTCTGGTCGCCCTCAACT............................................................................................................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................GTACGGGTACGGGTACGGGC....................................................................................... 20 0 12 0.08 1 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCGGCGGC............ 18 0 15 0.07 1 1 0 0 0 0 0

Anti-sense strand reads

GCCCGGTGTGCTGATGAGCCGGTTGCCCCCGACGTGGTGTGTGCCTGTACCGGTGCCGGTACCGGTACCGCCGCCACGGGTACCGCCAGTGCTAGACCGGCGGTAGTTGATGTTGGTGGTGTTAGCGGTAGTGGTCGTCGTCGACGAGTTCCCTAGGCAACACCAACAGCCGCAACCGCCATTACCACGGCGGCGACGGCTCTGTTGGTGGTGTTGCTGTTGGTGGTGGTGCCACGACGCAGCGGAGCCGAGCCCTTGTCGTAACCCTAGCCAAAGCCCGAGCCGTTGCCCATGCCCATGCCCATGCCCGCCACACGGATCGCTAGGCTTACACCACCGTAACGGTCCGCCGCCGAGACAAAGGTCGTTGTCGTCGTCGCCGCCGTTGCCGCCGAGG
***********************************************************************************************************************************************..((....((((((.(((......((...(((((((((((((((((.((((((((....)))))))).))))..))))...)))))))))....)).......))))))))).............))******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
..............................................................................................................................................................................................CGGCGACCGCGCTGTTGG............................................................................................................................................................................................. 18 2 6 1.67 10 10 0 0
....................................................................................................................TGGTGTTAGCGGTAGTGGTC..................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0
................................................................................................................TTGGTGGTGTTAGCGGTAG.......................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0
.........................................................................................................................................................................CCGCAACCGCCATTACCACG................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0
..........................................................................................................................................CGTCGACGAGTTCCCTAGGC............................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................................................................................................................................................................CGGTCCGCCGCCGAGACAA.................................... 19 0 1 1.00 1 1 0 0
............................CCGACGTGGTGTGTGCCTGT............................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0
....................................................................................................................................GGTCGTCGTCGCCGAGTT....................................................................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0
......................................................................................................................................................................CAGCCGCAATCGCCTTCACCAC................................................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0
............................................................................................................................................................................................GGAGGCGACGGCTCTGTT............................................................................................................................................................................................... 18 1 3 0.33 1 1 0 0
......................................................................CCGCAACAGGTACCGCCAG.................................................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0
....................................................................................................................................................................................................................................................................................................................................................................CACAAAGGTCGTTGTAGTC...................... 19 2 5 0.20 1 1 0 0
.............................................................................................................................................................................................ACGGCGACCGCGCTGTTGG............................................................................................................................................................................................. 19 3 20 0.15 3 3 0 0
...........................................................................................................................................................................................................................................GACGCAGCGGCGGCGTGCCC.............................................................................................................................................. 20 3 7 0.14 1 1 0 0
...........................................................................................................................................................................................CCACGGCGACCGCTCTGTTG.............................................................................................................................................................................................. 20 3 8 0.13 1 1 0 0
GCTCAGTGTGGTGATGAGC.......................................................................................................................................................................................................................................................................................................................................................................................... 19 3 9 0.11 1 1 0 0
..........................................................................................................TTGATGTTGGTAGAGTTA................................................................................................................................................................................................................................................................................. 18 2 16 0.06 1 1 0 0
...................................................................................................................GTGATCTTAGCGGTAATG........................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 1 0 0
...................................................................................................................................................................GAACAGCTGCAACCGCCTT....................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0
....................................................................GGCCGCCACGGCTACCGC....................................................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0
...............................................................................................................................................................................................................................................................................................................................................................GCCCAGAAAACGGTCGTTG........................... 19 3 20 0.05 1 1 0 0
.........................................................................................................................................................................................................................................................................................................................................................................AGGTCGTTGTCGTCGTCG.................. 18 0 20 0.05 1 1 0 0
.............................................................................................................................................................................................................................................................................GCCAAAGTTCGAGCTGTTG............................................................................................................. 19 3 20 0.05 1 1 0 0
.....................................................................................................................................................................ACCGCCGCGTCCGCCATTA..................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0
.......................................................................................................................................................................................................CTTTGTTGGTCGTGTTGCTA.................................................................................................................................................................................. 20 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:8952209-8952605 - dps_2762 CGGGCCACACGACTACTCGGCCA---ACGGG--------GGCTGCACCACACACGGACATGGCCACGGCCATGGCCA-TGGCGGCGGT------------GC-------------------------------------CCATGGCGGTCACGATCTGGC---CGCCATCAACTACAACCACCACAATCGCCATCACCAGCAGCAGCTGCTCAAGGGATCCGTTGTGGTTGTCG------------GCGTT-------------------------------------------------------------------GGCGGTAATGGTGCCGCCGCTGCCGAGACAACCACCACAACGACAACCACCACCAC---GGTGCTGCGTCGCCTCGGCT------------CGGGAA-CAGCA-TTGGGATCGGTTTCGGGCTCGGCAACGGGTACGGGTACGGGT------ACGGGCG---------------GTGT----------GCC---TAGCGATCCGAATGTGGTGGCATTGCCAGGC------GGCGGCTCTGTTTCCAGCAACAGCAGCAGCGGCGGCAACGGCGGCTCC
droPer2 scaffold_22:1257581-1257977 + CGGGCCACACGACTACTCGGCCA---ACGGG--------GGCTGCACCACACACGGACATGGCCACGGCCATGGCCA-TGGCGGCGGT------------GC-------------------------------------CCATGGCGGTCACGATCTGGC---CGCCATCAACTACAACCACCACAATCGCCATCACCAGCAGCAGCTGCTCAAGGGATCCGTTGTGGTTGTCG------------GCGTT-------------------------------------------------------------------GGCGGTAATGGTGCCGCCGCTGCCGAGACAACCACCACAACGACAACCACCACCAC---GGTGCTGCGTCGCCTCGGCT------------CGGGAA-CAGCA-TTGGGATCGGTTTCGGGCTCGGCAACGGCTACGGGTACGGGT------ACTAGCG---------------GTGT----------GCC---TAGCGATCCGAATGTGGTGGCATTGCCAGGC------GGCGGTTCTGTTTCCAGCAACAGCAGCAGCGGCGGCAACGGCGGCTCC
droWil2 scf2_1100000004515:2948647-2948926 + CGGACCCCATGATTATTCGGCCAACAATTGTCAGAGATTAGCGGCCG--------GA-------------------------------------------------------------------------------CAC-GATCGTGATCATCACCTGGCCGCTGCCATTAACTACAATCACCACAATCGCCACCACCAGCAACAACTGTTGAAGCAAGGTGGTGC-------------------------------------------------------------------------------------------------CAATGGGCCGGCGGCGGCGGAAACAACGACCACCACCACAACGACAACCAC---CGTAATGCGGCGTCTCAATG------------GATCGG-GCAGTG------------------------TG----------------------------------GCGGGAGCAGGTG---G-------CTC---TAGTGATGGGAATGT---GGGCTCACCT---------------TCCGCCTGCAGT---------------------------TCC
droVir3 scaffold_12970:3184509-3184824 - CGGCCCGCACGATTATGCCGCCAATAACGCT-----GGTGGCTGTGGCAATGGCACC-------------------------------------------------------------------------------GCC-------GGTCATGATCTGAC---CGCTATCAATTACAACCATCACAATCGGCATCATAAGCAGCAGCTTTTGAAGTTGGGCAGCGCCG------------------CCGGC-------------------------------------------------------------------GGGAGCAATGCTGGTGCAGCTGCTGAGACAACAACGACAACAACAACAACCACCAC---AGTGTTGCGTAGACTGGGCGCAACTGCGGCCA-----------------------------------------GTGCAAGTGCCAGT------GTGAGTG---------------GTGT----------CAA---TGCCGAGGCGAATGT---TGCGTTGCCTGTTGTCGTCTCCGGTTCCAGTTCGGGCAACAATAAC---------------------
droMoj3 scaffold_6473:4040290-4040667 - CGGACCGCATGACTATGTGGCAAATAACGGT-----GTTGGCGGC---------------------GGCGGTGGCGG-TGGCGGTGGCGGTGCAGGTGGCGCCTGTAGCGGTGGTGCTGGCTGCGGCGGTGCCTCAC----------GGCACGATCTGAC---GGCCATCAACTACAATCATCACAATCGCCATCACAAGCAGCAGCTGCTCAAGTTGGGCAGCGCCGCAGCCG------------GCG-------------------------------------------------------------------------CCAATGGCGGTGCTGCGGCCGAAACGACAACCACAACAACAACCACCACCAC---AGTGCTGCGCAGGCTGGGCGCCACAGCGACCA-----------------------------------------GTGCGAGCGCCAGCGCCAGTGTGAGTG---------------GCG---TCACGGAG-------------GCCAGTGT---CGCGCTGCCCGTC------TCTGGCGCCAGTTCGAGCAACAACAACGGCAGCAACAA----------
droGri2 scaffold_15081:683692-684037 + CGGACCGCACGATTATGCGGCCAACAGTGGC--------GGGGGCGGTGGTGGTGCT------------------GG-TGGTGGTGGTGGTTCA------------------------------------------GCC-------GGGCACGATTTGAC---TGCCATTAACTATAATCATCACAATCGACACCATCAGCAGCAGCTGCTGAAATTGGGCGGTGGCA---GTG------------GCGGT-------------------------------------------------------------------GGCGGCAGTGGCGCAG---CTGCCGAAACGACAACCACAACGACAACAACAACGAC---AGTGTTGCGCAGACTGGGCGCACCGCCGGCCA-----------------------------------------GTGCCAGTGCAAGTGTTAGTGCGAATGTCAGTGGTGCTG---GCGTTGTCACCGAT-------------GCCAATGT---CGCGTTGCCCGTT------TCTGCAAGCACTGTGGCCAACAATAGC------------------ACA
droAna3 scaffold_12903:405097-405376 + AGGACCGCACGACTACAC------TAAT-----------GGCTGCTCCAAGCACATC-------------------------------------------------------------------------------CGT----GGCGGGCACGATCTGGC---GGCCATTAACTACAACCACCACAACCGCCACCACCAGCAGCAGCTGCTCAAGCTGGGCAGCTCCC------------------------------------------------------------------------------------------AGGAGCAG-GGCGCTGCGGCGGCGGAGACGACAACCACAACGACTACGACCACAAC---GGTGCTGCGGCGGTTGGGTG------------GAGGTG-GCGGTA------------------------GC----------------------------------GGAGGAGTAG------CTAC----CCC---AGGAGACGCCAATGT---GGCCCTGCCAGTC------ACTGGATCC------ACCAGCAGCAGC---------------------
droBip1 scf7180000395818:48123-48399 - TGGGCCGCACGACTACACCACC-----------------GGCTGCTCCAACCACATC-------------------------------------------------------------------------------CGC----GGCGGCCACGATCTGGC---GGCCATCAACTACAACCACCACAACCGCCACCACCAGCAGCAGCTGCTAAAGCTGGGCAACTCCC------------------------------------------------------------------------------------------AGGAGCAG-GGCGCTGCCGCGGCGGAGACCACAACCACAACGACTACGACCACAAC---AGTGCTGCGCCGCTTGGGAG------------GCGGCA-ACGGAG----------------------------------------------------------------GAGCCG------CTGC----TCCCGGAGGAGACGCCAATGT---GGCCCTGCCCGTT------ACAGGATCCACAAGCAGCAG------C---------------------
droKik1 scf7180000302592:987342-987644 - CGGTCCTCATGACTATTCCGCCAGCAATGGC--------AGTTGCTCAAGTCATGCCCATGCCCACGCCCACTTGCACTCGC----AT------------TC-------------------------------------GCATCACGCACACGATCTGGC---GGCCATCAACTACAATCATCACAATCGCCATCATCAGCAGCAGCTTCTCAAGCTGAATACCACGTCAGGTGGTGGTGGTGGTGTTTCC-------------------------------------------------------------------AGTGCCAATGCTGCTGCGGCGGCAGAGACCACCACCACAACGACCACCACTACCACAATGGTGCTGCGACGTCTGGAAG------------CGTCTG-AGCCTG----------------------------------------------------------------------------GCA-------------------------------------------------------CGGGATCAAGCAGCAGCAGCAG-------------------
droFic1 scf7180000453982:33877-34147 - CGGTCCGCACGACTATTCCGCCAGCAATGGC--------AGCTGCTCCAATCACGTTCATGGT-------------------------------------------------------------------------CAC-------GGTCACGACTTGGC---GGCCATCAACTACAATCACCACAATCGCCACCACCAGCAGCAGTTGCTCAAGCTGGGCAGCGCCTCGTCCG------------CCGGT-------------------------------------------------------------------GGCGGCAGTGGAGCGGCGGCCGCGGAGACGACAACCACGACGACCACAACCACCAC---GGTGCTGCGGCGTCTGGG------------------GC-AATCCA----------------------------------------------------------------------------GTGGCGAT-------------GCCAGTGT---GGCTTTGCCTGGA------TCCAGTTCGGGA------------------------------------
droEle1 scf7180000490214:1581582-1581885 + CGGACCACACGATTATTCCGCCAGTAATGGC-----GTCAGCTGCTCGAATCATGGCCACAGCCACAGCCACAGCCA-TGG-------------------------------------------------------------TCACGGTCACGATCTGGC---GGCCATAAACTACAATCACCACAATCGCCATCATCAGCAGCAGCTGCTGAAGCTGGGCAGCGCCACGTCCG------------GCGCC-------------------------------------------------------------------GGAGGCAGTGGAGCGGCGGCGGCCGAGACGACAACCACCACAACGACCACGACCAC---GGTGTTGCGACGCCTGGGAGCAACCG-------GTCCGTCGGTGG----------------------------------------------------------------------------GAGCCGAA-------------TCGAGTGT---CGCATTGCCCGGT------TCCAGTTCGGGA------------------------------------
droRho1 scf7180000779985:403400-403678 - CGGACCGCACGACTATTCCGCCAGCAATGGC--------AGCTGCTCGAACCACGCC-------------------------------------------------------------------------------CAC-------GGTCACGATCTGGC---GGCCATAAACTACAATCACCACAATCGCCATCACCAGCAGCAGTTGCTGAAACTGGGCAGCGCCTCAACCG------------GCGGC-------------------------------------------------------------------GGTGGCAGTGTTGCAGCGGCGGCCGAGACGACAACCACCACGACGACCACCACCAC---GGTGCTGCGGCGCCTGGGAG------------CGGGAC-AAGCTG----------------------------------------------------------------------------GCGCCGAT-------------GCCAGTGT---GGCATTGCCGGGA------TCAAATTCGGGATCCAGCAG----------------------------
droBia1 scf7180000302187:1116701-1116982 + CGGACCGCACGACTACTCCGCCAGCAATGGC--------AGCTGCTCGAATCACAGC-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---GACCATCAACTACAACCACCACAATCGCCACCACCAGCAGCAGCTACTCAAGCTGGGCAGCGCCACTTCGG------------CCGGC-------------------------------------------------------------------GGGGGAGGTGGCGCAGCGGCGGCCGAGACGACGACCACCACAACGACCACCACCAC---GGTGCTGCGACGTCTTGGGG------------CAGCCC-AAGGAG----------------------------------------------------------------------------GCGCCGAT----------GCTGGCAGCGT---GGCCCTGCCCGGA------TCCGGATCTGGATCCAGCAG----------------------------
droTak1 scf7180000415872:959368-959658 - CGGTCCGCACGACTATTCGGCCAGCAATGGC--------AGCTGCTCGAATCATGCG-------------------------------------------------------------------------------CAC-------GGTCACGATTTGGC---GGCCATAAACTACAATCACCACAATCGCCATCATCAGCAGCAGCTGCTCAAGCTGGGCAGCGCCTCGTCCG------------CCGGC-------------------------------------------------------------------GGAGGCAGTGTGGCGGCGGCGGCCGAGACGACGACGACCACAACGACCACCACCAC---GGTGCTGCGGCGATTGGGAGGAACAGCGGCGACTGGGC-AGGCTG----------------------------------------------------------------------------GCGGCGAG-------------GCGAGTGT---GGCCCTGCCAGGA------TCTAGTTCGGGATCGAGCAG----------------------------
droEug1 scf7180000409509:590984-591262 + CGGACCACACGACTATTCCGCCAGCAATGGC--------AGCTGCTCGAATCACGCC-------------------------------------------------------------------------------TAT-------GGTCACGATCTGGC---GGCCATAAACTACAATCACCACAATCGGCACCATCAGCAGCAGTTGCTCAAACTGGGCAGCGCTTCATCCG------------GCGGC-------------------------------------------------------------------GGAGGCAATGGGGCAGCTGCGGCGGAGACGACGACCACCACAACAACCACTACCAC---CGTGCTGCGGCGCCTTGGAA------------CAGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCCAGTGT---AGCATTGCCTGGA------TCTAGTTCGGGATCCAGCAG----------------------------
dm3 chrX:20343292-20343562 - CGGACCTCACGACTATTCCGCCAGCAATGGT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCATCAACTACAATCACCACAATCGCCATCACCAGCAACAGTTGTTGAAACTGGGCAGCGCTACATCTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGGCGCAGCCGCGGCCGAGACGACGACCACCACAACGACCACCACCAC---GGTGCTGCGGCGCCTCGGTA------------CAGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCTAGTGT---GGCATTGCCCGCA------TCAAGTTCCGGA------------------------------------
droSim2 x:19078815-19079093 - CGGACCTCACGACTATTCCGCCAGCAATGGT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCATCAACTACAATCACCACAATCGCCATCACCAGCAACAGTTGCTGAAGCTGGGCAGCGCCACATCTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGGCGCAGCCGCGGCCGAGACGACGACCACCACAACGACCACCACCAC---GGTGCTGCGGCGCCTCGGTA------------CGGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCGAGTGT---GGCCTTGCCCGCA------TCTAGTTCCGGATCCAGCAG----------------------------
droSec2 scaffold_8:2537862-2538140 - CGGACCTCACGACTATTCCGCCAGCAATGGT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCATCAACTACAATCACCACAATCGCCATCACCAGCAACAGTTGCTAAAGCTGGGCAGCGCTACATCTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGGCGCAGCCGCGGCCGAGACGACGACCACCACAACGACCACCACCAC---GGTGCTGCGGCGCCTCGGTA------------CGGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCGAGTGT---GGCATTGCCCGCA------TCTAGTTCCGGATCCAGCAG----------------------------
droYak3 X:19568754-19569099 - CGGACCTCACGACTACTCCGCCAGCAATGGT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCATAAACTACAATCACCACAATCGCCATCATCAGCAGCAGTTGCTGAAGCTGGGCAGCGCTACATCTG------------GCGGCGGAGGCAGCGGCGCAGCTGCGGCGGAGACGACNNNNNNNNNNGCTGGGCAGCGCTACATCTGGCGGCGGAGGCAGCGGCGCAGCTGCGGCGGAGACGACGACCACCACAACGACCACTACCAC---GGTGCTGCGGCGCCTCGGTA------------CGGGTC-AAGCCG----------------------------------------------------------------------------CCGCCGAA-------------GCCAGTGT---AGCGTTGCCCGGA------TCTAGTTCCGGATCCGGCAG----------------------------
droEre2 scaffold_4690:16947936-16948214 - CGGACCTCACGACTACTCCGCCAGCAATGGT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCATAAACTACAATCACCACAACCGCCATCACCAGCAGCAGTTGTTGAAGCTGGGCAGCGCTACATCTG------------GCGGC-------------------------------------------------------------------GGAGGCAGTGGCGCAGCTGCAGCCGAGACGACGACCACCACAACGACCACTACCAC---GGTGCTGCGGCGCCTCGGTA------------CGGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCCAGTGT---AGCCTTGCCCGGA------TCTAGTTCCGGATCCGGCAG----------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGGGCCACACGACTACTCGGCCA---ACGGG--------GGCTGCACCACACACGGACATGGCCACGGCCATGGCCA-TGGCGGCGGT------------GC-------------------------------------CCATGGCGGTCACGATCTGGC---CGCCATCAACTACAACCACCACAATCGCCATCACCAGCAGCAGCTGCTCAAGGGATCCGTTGTGGTTGTCG------------GCGTT-------------------------------------------------------------------GGCGGTAATGGTGCCGCCGCTGCCGAGACAACCACCACAACGACAACCACCACCAC---GGTGCTGCGTCGCCTCGGCT------------CGGGAA-CAGCA-TTGGGATCGGTTTCGGGCTCGGCAACGGGTACGGGTACGGGT------ACGGGCG---------------GTGT----------GCC---TAGCGATCCGAATGTGGTGGCATTGCCAGGC------GGCGGCTCTGTTTCCAGCAACAGCAGCAGCGGCGGCAACGGCGGCTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................CGGCCA---ACGGG--------GGCTGCACCACAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020200000000
............................................................................................................................................................................................................................................................................................................................................................................................GCTGCGTCGCCTCGGCT------------CGG.........................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................CATCACCAGCAGCAGCTGCTC.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........GACTACTCGGCCA---ACGGG--------GGCTGCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CCTCGGCT------------CGGGAA-CAGCA-TTGGGATC.......................................................................................................................................................................2711.0010010000000
.................CGGCCA---ACGGG--------GGCTGCACCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................................................................................................................................................TTGTGGTTGTCG------------GCGTT-------------------------------------------------------------------GGCGGT.................................................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................................................................................................................................GATCCGTTGTGGTTGTCG------------GCGTT-------------------------------------------------------------------GGC....................................................................................................................................................................................................................................................................................2611.0010010000000
.....................................................................CATGGCCA-TGGCGGCGGT------------GC-------------------------------------CCATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..........GACTACTCGGCCA---ACGGG--------GGCTGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---------------GTGT----------GCC---TAGCGATCCGAATGTGGT...................................................................2711.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................AACGACAACCACCACCAC---GGTGCT......................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................CAGCTGCTCAAGGGATCCGTT.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................CCGTTGTGGTTGTCG------------GCGTT-------------------------------------------------------------------GGC....................................................................................................................................................................................................................................................................................2311.0010000010000
..........GACTACTCGGCCA---ACGGG--------GGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC---TAGCGATCCGAATGTGGTGG.................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCTCGGCT------------CGGGAA-CA...................................................................................................................................................................................2011.0010100000000
............................GGG--------GGCTGCACCACACACGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
......ACACGACTACTCGGCCA---ACGGG--------GGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TAGCGATCCGAATGTGGT...................................................................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------ACGGGCG---------------GTGT----------GCC---TAGCG................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................GACAACCACCACAACGACAACCACC....................................................................................................................................................................................................................................2511.0010010000000
...................................................................................................................................................................................................................................GTTGTCG------------GCGTT-------------------------------------------------------------------GGCGGT.................................................................................................................................................................................................................................................................................1811.0010000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGTACGGGTACGGGT------ACGGGC.........................................................................................................................2460.1710100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGTACGGGTACGGGT------ACGGGCT---------------.........................................................................................................2570.1410000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGGTACGGGT------ACGGGC.........................................................................................................................20120.0810000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCGGCGGC............18150.0710100000000
droPer2
CGGGCCACACGACTACTCGGCCA---ACGGG--------GGCTGCACCACACACGGACATGGCCACGGCCATGGCCA-TGGCGGCGGT------------GC-------------------------------------CCATGGCGGTCACGATCTGGC---CGCCATCAACTACAACCACCACAATCGCCATCACCAGCAGCAGCTGCTCAAGGGATCCGTTGTGGTTGTCG------------GCGTT-------------------------------------------------------------------GGCGGTAATGGTGCCGCCGCTGCCGAGACAACCACCACAACGACAACCACCACCAC---GGTGCTGCGTCGCCTCGGCT------------CGGGAA-CAGCA-TTGGGATCGGTTTCGGGCTCGGCAACGGCTACGGGTACGGGT------ACTAGCG---------------GTGT----------GCC---TAGCGATCCGAATGTGGTGGCATTGCCAGGC------GGCGGTTCTGTTTCCAGCAACAGCAGCAGCGGCGGCAACGGCGGCTCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-TTGGGATCGGTTTCGGGCTCGG.........................................................................................................................................................2613.003300000
....................................................................................................................................................................................................................................................................................................................................AATGGTGCCGCCGCTGCCGA.............................................................................................................................................................................................................................................................2011.001010000
..............................................................................................................................................................................................................................TTGTGGTTGTCG------------GCGTT-------------------------------------------------------------------GGCGT..................................................................................................................................................................................................................................................................................2211.001000001
...................................................................................................................................................GTCACGATCTGGC---CGCCATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................................................................................................ATGGTGCCGCCGCTGCCGAG............................................................................................................................................................................................................................................................2011.001010000
......................................................................................................................................................................................................................................................................................................................................................GAGACAACCACCACAACGACAACCACCAC..................................................................................................................................................................................................................................2911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------GCC---TAGCGATCCGAATGTGGTGG.................................................................2411.001001000
......................................................................................................................................................................................................AGCAGCAGCTGCTCAAGGGATT.........................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...............................................................................................................................................................................................................TGCTCAAGGGATCCGTTGTGGT................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGATCCGAATGTGGT...................................................................1811.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTGGGATCGGTTTCGGGCT............................................................................................................................................................2011.001010000
droWil2
CGGACCCCATGATTATTCGGCCAACAATTGTCAGAGATTAGCGGCCG--------GA-------------------------------------------------------------------------------CAC-GATCGTGATCATCACCTGGCCGCTGCCATTAACTACAATCACCACAATCGCCACCACCAGCAACAACTGTTGAAGCAAGGTGGTGC-------------------------------------------------------------------------------------------------CAATGGGCCGGCGGCGGCGGAAACAACGACCACCACCACAACGACAACCAC---CGTAATGCGGCGTCTCAATG------------GATCGG-GCAGTG------------------------TG----------------------------------GCGGGAGCAGGTG---G-------CTC---TAGTGATGGGAATGT---GGGCTCACCT---------------TCCGCCTGCAGT---------------------------TCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAATG------------GATCGG-GCAGTG------------------------TG----------------------------------GC.................................................................................................................2512.00200200
...................................GATTAGCGGCCG--------GA-------------------------------------------------------------------------------CAC-GAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
.............................................................................................................................................................................................................................................................................................................................................................................................ATGCGGCGTCTCAATG------------GATCG.......................................................................................................................................................................................2111.00100001
........................................................A-------------------------------------------------------------------------------CAC-GATCGTGATCATCACCTGGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
............................................................................................................................................................................................................................................................................................................................................................................................................G------------GATCGG-GCAGTG------------------------TG----------------------------------GCGG...............................................................................................................1911.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTG---G-------CTC---TAGTGATGGGAATGT---G..................................................................2511.00100100
..GACCCCATGATTATTCGGCCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
................TCGGCCAACAATTGTCAGAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
..........................................................................................................................................................................................................ACAACTGTTGAAGCAAGGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
....................................................................................................................................................TCATCACCTGGCCGCTGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
...........................................................................................................................................................................ACTACAATCACCACAATCGCCACC..................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAATG------------GATCGG-GCAGTG------------------------TG----------------------------------...................................................................................................................2311.00100100
...................GCCAACAATTGTCAGAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................TCGG-GCAGTG------------------------TG----------------------------------GCGGGAGC...........................................................................................................2011.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................CGG-GCAGTG------------------------TG----------------------------------GCGGGAGCA..........................................................................................................2011.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG---G-------CTC---TAGTGATGGGA..........................................................................1811.00100010
..........................................................................................................................................C-GATCGTGATCATCACCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TAGTGATGGGAATGT---GGG................................................................1911.00100010
......................................TAGCGGCCG--------GA-------------------------------------------------------------------------------CAC-GATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------CTC---TAGTGATGGGAATGT---GGGCT..............................................................2411.00100100
...............................CAGAGATTAGCGGCCG--------GA-------------------------------------------------------------------------------CAC-GATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
................................................................................................................................................................................................................................................................................................................................................................................AACCAC---CGTAATGCGGCGTCTCAATG------------G...........................................................................................................................................................................................2711.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................GTAATGCGGCGTCTCAATG------------GATCGG-G....................................................................................................................................................................................2611.00100010
.........................................................................................................................................................................................................AACAACTGTTGAAGCAAGGT........................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.....................................................................................................................................................................................................CAGCAACAACTGTTGAAGCAAGGT........................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
............................................................................................................................................................................................................AACTGTTGAAGCAAGGTGGTGC-------------------------------------------------------------------------------------------------CAAT..............................................................................................................................................................................................................................................................................2611.00100010
...................................GATTAGCGGCCG--------GA-------------------------------------------------------------------------------CAC-GATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...................................GATTAGCGGCCG--------GA-------------------------------------------------------------------------------CAC-GATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..............................................................................................................................................................................ACAATCACCACAATCGCCACC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------CTC---TAGTGATGGGAATGT---GGGC...............................................................2311.00100100
.............................................................................................................................................................................................................ACTGTTGAAGCAAGGTGGTGC-------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................2111.00101000
droVir3
CGGCCCGCACGATTATGCCGCCAATAACGCT-----GGTGGCTGTGGCAATGGCACC-------------------------------------------------------------------------------GCC-------GGTCATGATCTGAC---CGCTATCAATTACAACCATCACAATCGGCATCATAAGCAGCAGCTTTTGAAGTTGGGCAGCGCCG------------------CCGGC-------------------------------------------------------------------GGGAGCAATGCTGGTGCAGCTGCTGAGACAACAACGACAACAACAACAACCACCAC---AGTGTTGCGTAGACTGGGCGCAACTGCGGCCA-----------------------------------------GTGCAAGTGCCAGT------GTGAGTG---------------GTGT----------CAA---TGCCGAGGCGAATGT---TGCGTTGCCTGTTGTCGTCTCCGGTTCCAGTTCGGGCAACAATAAC---------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................AACGCT-----GGTGGCTGTGGCAATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GCTGAGACAACAACGACAACAACA..........................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
............................................TGGCAATGGCACC-------------------------------------------------------------------------------GCC-------GGTCATGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
.......................................................................................................................................................................................................................TTGGGCAGCGCCG------------------CCGGC-------------------------------------------------------------------GGGAGC.................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTGCCAGT------GTGAGT.........................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCCAGTTCGGGCAACAA.........................2111.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------GTGT----------CAA---TGCCGAGGCGAATGT---TGC................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCTCCGGTTCCAGTTCGGGC..............................2411.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATGATCTGAC---CGCTATCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................CATGATCTGAC---CGCTATCAATTACAACC.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AATGCTGGTGCAGCTGCTGAGACAAC.......................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GTGCAGCTGCTGAGACAACAAC....................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCGGTTCCAGTTCGGGCAACAAT........................2611.001000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GCAATGCTGGTGCAGCTGCTGAG............................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTCTCCGGTTCCAGTTCGGGCA.............................2611.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGT---TGCGTTGCCTGTTGTCGTC................................................2411.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................CCA-----------------------------------------GTGCAAGTGCCAGT------GTGAGTG---------------G........................................................................................................2511.001000000000001000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GTGAGTG---------------GTGT----------CAA---TGCCGAGGCG...........................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCTGTTGTCGTCTCCG............................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TCATGATCTGAC---CGCTATCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................GTAGACTGGGCGCAACTGCGGC..............................................................................................................................................................................................2211.001000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCGTCTCCGGTTCCAGTTCG.................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGT---TGCGTTGCCTGTT......................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCAGT------GTGAGTG---------------GTGT----------CA.........................................................................................2211.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................ATCAATTACAACCATCACAATCGGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTGCCAGT------GTGAGTG---------------G........................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
............TTATGCCGCCAATAACGCT-----G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000100000000000000000000000000000000000000
........ACGATTATGCCGCCAATAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
..........GATTATGCCGCCAATAACGCT-----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT----------CAA---TGCCGAGGCGT..........................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GAAGTTGGGCAGCGCCG------------------CC.............................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAGGCGAATGT---TGCGT..............................................................2011.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CAACAACAACCACCAC---AGT.........................................................................................................................................................................................................................1920.501000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACCACCAC---A...........................................................................................................................................................................................................................2180.131000000000000000000000000001000000000000000000000000000000000000
droMoj3
CGGACCGCATGACTATGTGGCAAATAACGGT-----GTTGGCGGC---------------------GGCGGTGGCGG-TGGCGGTGGCGGTGCAGGTGGCGCCTGTAGCGGTGGTGCTGGCTGCGGCGGTGCCTCAC----------GGCACGATCTGAC---GGCCATCAACTACAATCATCACAATCGCCATCACAAGCAGCAGCTGCTCAAGTTGGGCAGCGCCGCAGCCG------------GCG-------------------------------------------------------------------------CCAATGGCGGTGCTGCGGCCGAAACGACAACCACAACAACAACCACCACCAC---AGTGCTGCGCAGGCTGGGCGCCACAGCGACCA-----------------------------------------GTGCGAGCGCCAGCGCCAGTGTGAGTG---------------GCG---TCACGGAG-------------GCCAGTGT---CGCGCTGCCCGTC------TCTGGCGCCAGTTCGAGCAACAACAACGGCAGCAACAA----------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................CACCACCAC---AGTGCTGCGCAGGCT.............................................................................................................................................................................................................2411.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---CGCGCTGCCCGTC------TCTGGCGC........................................2311.001000100
...........................................................................................................................................................................ACTACAATCATCACAATCGCCATCACA...............................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------GCG---TCACGGAG-------------GCCAGTGT---C..................................................................2111.001000001
.......................................................................................................TGTAGCGGTGGTGCTGGCTGCGGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................................................................ATCGCCATCACAAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................G-------------------------------------------------------------------------CCAATGGCGGTGCTGCGGC................................................................................................................................................................................................................................................................2011.001100000
..........................................GGC---------------------GGCGGTGGCGG-TGGCGGTGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.331100000
...................................................................GCGGTGGCGG-TGGCGGTGGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.071000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACGGCAGCAACA...........19200.051100000
.......................................................................TGGCGG-TGGCGGTGGCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
droGri2
CGGACCGCACGATTATGCGGCCAACAGTGGC--------GGGGGCGGTGGTGGTGCT------------------GG-TGGTGGTGGTGGTTCA------------------------------------------GCC-------GGGCACGATTTGAC---TGCCATTAACTATAATCATCACAATCGACACCATCAGCAGCAGCTGCTGAAATTGGGCGGTGGCA---GTG------------GCGGT-------------------------------------------------------------------GGCGGCAGTGGCGCAG---CTGCCGAAACGACAACCACAACGACAACAACAACGAC---AGTGTTGCGCAGACTGGGCGCACCGCCGGCCA-----------------------------------------GTGCCAGTGCAAGTGTTAGTGCGAATGTCAGTGGTGCTG---GCGTTGTCACCGAT-------------GCCAATGT---CGCGTTGCCCGTT------TCTGCAAGCACTGTGGCCAACAATAGC------------------ACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................AACGACAACCACAACGACA..........................................................................................................................................................................................................................................19100.10110
droAna3
AGGACCGCACGACTACAC------TAAT-----------GGCTGCTCCAAGCACATC-------------------------------------------------------------------------------CGT----GGCGGGCACGATCTGGC---GGCCATTAACTACAACCACCACAACCGCCACCACCAGCAGCAGCTGCTCAAGCTGGGCAGCTCCC------------------------------------------------------------------------------------------AGGAGCAG-GGCGCTGCGGCGGCGGAGACGACAACCACAACGACTACGACCACAAC---GGTGCTGCGGCGGTTGGGTG------------GAGGTG-GCGGTA------------------------GC----------------------------------GGAGGAGTAG------CTAC----CCC---AGGAGACGCCAATGT---GGCCCTGCCAGTC------ACTGGATCC------ACCAGCAGCAGC---------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................AG-GGCGCTGCGGCGGCGGAGA...........................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................CAG-GGCGCTGCGGCGGCGG..............................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................GGCGGTTGGGTG------------GAGGTG-GCGGT................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................................................................................................................................................................CGGCGGAGACGACAACCACAA...............................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................AG-GGCGCTGCGGCGGCGGAGACGACA......................................................................................................................................................................................................................................................2611.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................TGGGTG------------GAGGTG-GCGGTA------------------------GC----------------------------------GGAGGA.............................................................................................................2611.001100000
..............................................................................................................................................................................................................................................................................................................................................CGGCGGCGGAGACGACAACCACAACG.............................................................................................................................................................................................................................................2611.001100000
..................................................................................................................................................................................................................TCAAGCTGGGCAGCTCCC------------------------------------------------------------------------------------------AGGAGC.................................................................................................................................................................................................................................................................................2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................................AAC---GGTGCTGCGGCGGTTGGGT.........................................................................................................................................................................................................2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................CGACCACAAC---GGTGCTGCGGCGGT..............................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................GACTACGACCACAAC---GGTGC.......................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................CACGATCTGGC---GGCCATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
....................................................................................................................................................................................................CCAGCAGCAGCTGCTCAAGCT............................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
TGGGCCGCACGACTACACCACC-----------------GGCTGCTCCAACCACATC-------------------------------------------------------------------------------CGC----GGCGGCCACGATCTGGC---GGCCATCAACTACAACCACCACAACCGCCACCACCAGCAGCAGCTGCTAAAGCTGGGCAACTCCC------------------------------------------------------------------------------------------AGGAGCAG-GGCGCTGCCGCGGCGGAGACCACAACCACAACGACTACGACCACAAC---AGTGCTGCGCCGCTTGGGAG------------GCGGCA-ACGGAG----------------------------------------------------------------GAGCCG------CTGC----TCCCGGAGGAGACGCCAATGT---GGCCCTGCCCGTT------ACAGGATCCACAAGCAGCAG------C---------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGGTCCTCATGACTATTCCGCCAGCAATGGC--------AGTTGCTCAAGTCATGCCCATGCCCACGCCCACTTGCACTCGC----AT------------TC-------------------------------------GCATCACGCACACGATCTGGC---GGCCATCAACTACAATCATCACAATCGCCATCATCAGCAGCAGCTTCTCAAGCTGAATACCACGTCAGGTGGTGGTGGTGGTGTTTCC-------------------------------------------------------------------AGTGCCAATGCTGCTGCGGCGGCAGAGACCACCACCACAACGACCACCACTACCACAATGGTGCTGCGACGTCTGGAAG------------CGTCTG-AGCCTG----------------------------------------------------------------------------GCA-------------------------------------------------------CGGGATCAAGCAGCAGCAGCAG-------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGGTCCGCACGACTATTCCGCCAGCAATGGC--------AGCTGCTCCAATCACGTTCATGGT-------------------------------------------------------------------------CAC-------GGTCACGACTTGGC---GGCCATCAACTACAATCACCACAATCGCCACCACCAGCAGCAGTTGCTCAAGCTGGGCAGCGCCTCGTCCG------------CCGGT-------------------------------------------------------------------GGCGGCAGTGGAGCGGCGGCCGCGGAGACGACAACCACGACGACCACAACCACCAC---GGTGCTGCGGCGTCTGGG------------------GC-AATCCA----------------------------------------------------------------------------GTGGCGAT-------------GCCAGTGT---GGCTTTGCCTGGA------TCCAGTTCGGGA------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGGACCACACGATTATTCCGCCAGTAATGGC-----GTCAGCTGCTCGAATCATGGCCACAGCCACAGCCACAGCCA-TGG-------------------------------------------------------------TCACGGTCACGATCTGGC---GGCCATAAACTACAATCACCACAATCGCCATCATCAGCAGCAGCTGCTGAAGCTGGGCAGCGCCACGTCCG------------GCGCC-------------------------------------------------------------------GGAGGCAGTGGAGCGGCGGCGGCCGAGACGACAACCACCACAACGACCACGACCAC---GGTGTTGCGACGCCTGGGAGCAACCG-------GTCCGTCGGTGG----------------------------------------------------------------------------GAGCCGAA-------------TCGAGTGT---CGCATTGCCCGGT------TCCAGTTCGGGA------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGGACCGCACGACTATTCCGCCAGCAATGGC--------AGCTGCTCGAACCACGCC-------------------------------------------------------------------------------CAC-------GGTCACGATCTGGC---GGCCATAAACTACAATCACCACAATCGCCATCACCAGCAGCAGTTGCTGAAACTGGGCAGCGCCTCAACCG------------GCGGC-------------------------------------------------------------------GGTGGCAGTGTTGCAGCGGCGGCCGAGACGACAACCACCACGACGACCACCACCAC---GGTGCTGCGGCGCCTGGGAG------------CGGGAC-AAGCTG----------------------------------------------------------------------------GCGCCGAT-------------GCCAGTGT---GGCATTGCCGGGA------TCAAATTCGGGATCCAGCAG----------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGGACCGCACGACTACTCCGCCAGCAATGGC--------AGCTGCTCGAATCACAGC-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---GACCATCAACTACAACCACCACAATCGCCACCACCAGCAGCAGCTACTCAAGCTGGGCAGCGCCACTTCGG------------CCGGC-------------------------------------------------------------------GGGGGAGGTGGCGCAGCGGCGGCCGAGACGACGACCACCACAACGACCACCACCAC---GGTGCTGCGACGTCTTGGGG------------CAGCCC-AAGGAG----------------------------------------------------------------------------GCGCCGAT----------GCTGGCAGCGT---GGCCCTGCCCGGA------TCCGGATCTGGATCCAGCAG----------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGGTCCGCACGACTATTCGGCCAGCAATGGC--------AGCTGCTCGAATCATGCG-------------------------------------------------------------------------------CAC-------GGTCACGATTTGGC---GGCCATAAACTACAATCACCACAATCGCCATCATCAGCAGCAGCTGCTCAAGCTGGGCAGCGCCTCGTCCG------------CCGGC-------------------------------------------------------------------GGAGGCAGTGTGGCGGCGGCGGCCGAGACGACGACGACCACAACGACCACCACCAC---GGTGCTGCGGCGATTGGGAGGAACAGCGGCGACTGGGC-AGGCTG----------------------------------------------------------------------------GCGGCGAG-------------GCGAGTGT---GGCCCTGCCAGGA------TCTAGTTCGGGATCGAGCAG----------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGGACCACACGACTATTCCGCCAGCAATGGC--------AGCTGCTCGAATCACGCC-------------------------------------------------------------------------------TAT-------GGTCACGATCTGGC---GGCCATAAACTACAATCACCACAATCGGCACCATCAGCAGCAGTTGCTCAAACTGGGCAGCGCTTCATCCG------------GCGGC-------------------------------------------------------------------GGAGGCAATGGGGCAGCTGCGGCGGAGACGACGACCACCACAACAACCACTACCAC---CGTGCTGCGGCGCCTTGGAA------------CAGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCCAGTGT---AGCATTGCCTGGA------TCTAGTTCGGGATCCAGCAG----------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CGGACCTCACGACTATTCCGCCAGCAATGGT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCATCAACTACAATCACCACAATCGCCATCACCAGCAACAGTTGTTGAAACTGGGCAGCGCTACATCTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGGCGCAGCCGCGGCCGAGACGACGACCACCACAACGACCACCACCAC---GGTGCTGCGGCGCCTCGGTA------------CAGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCTAGTGT---GGCATTGCCCGCA------TCAAGTTCCGGA------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................AGTTGTTGAAACTGGGCAGCG....................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TTGTTGAAACTGGGCAGCGCT..................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TGTTGAAACTGGGCAGCGCTACAT..............................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................ATCTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGGCGC.........................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................C-------GGTCACGACCTGGC---AGCCATCAACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCTAGTGT---GGC................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCCAGCAATGGT--------GGCTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------------------------------------------GCGCCGAA-------------GCTAGTGT---GGCATT.............................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.GGACCTCACGACTATTCCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGGACCTCACGACTATTCCGCCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGAA-------------GCTAGTGT---GGCATTGCCCG........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CACCAC---GGTGCTGCGGCGCCTCG...........................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AGTGGCGCAGCCGCGGCCGAGAC..........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TCCGCCAGCAATGGT--------GGCTGCTCGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................AC-------GGTCACGACCTGGC---AGCCATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GC............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GACCACCACCAC---GGTGCTG.....................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CCACCACCAC---GGTGCTGCGGCGC...............................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GCCTCGGTA------------CAGGTC-AAGCT................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TCTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGGCGA.........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................A------------CAGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------..............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AACTGGGCAGCGCTACATCT............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................CCTGGC---AGCCATCAACTACA....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------------------------------------------GCGCCGAA-------------GCTAGTGT---GGCA...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................................................GTGGCGCAGCCGCGGCCGAGA...........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................C-------GGTCACGACCTGGC---AGCCATCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGCAATGGT--------GGCTGCTCGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................AGCCGCGGCCGAGACGACGACCA..................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................CATCTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGGC...........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GGCGCAGCCGCGGCCGAGACGACGAC....................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................GTCACGACCTGGC---AGCCATCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ACGACCACCACCAC---GGTGCTGCGGC.................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TGTTGAAACTGGGCAGCGCTACATCT............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CACCACCAC---GGTGCTGCGGCG................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TCTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGGCGC.........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCGGTA------------CAGGTC-AAGCTG----------------------------------------------------------------------------GCGC...............................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................AATCACCACAATCGCCATCAC................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................T-------------------------------------------------------------------GGAGGCAGTGGCGCAGCCGCG..................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------..............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TCACGACCTGGC---AGCCATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................ACTGGGCAGCGCTACATCTG------------GCG............................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CAATGGT--------GGCTGCTCGAATCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................................................................................................................................................................TACAATCACCACAATCGCCATCACCAGC............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TCACCAGCAACAGTTGTTGAAACTGGGC........................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................AACTACAATCACCACAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CGGT-------------------------------------------------------------------GGAGGCAGTGGCGCAGC......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CAC-------GGTCACGACCTGGC---AGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................CGCGGCCGAGACGACGACCACCA...............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AATGGT--------GGCTGCTCGAATCACTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------------------------------------------------------------GCGCCGAA-------------GCTAGTGT---...................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCTAGTGT---GG.................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATCAACTACAATCACCACAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................C-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCTAGTGT---G..................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------GCTAGTGT---GGCATTGCCCG........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCT...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCCGCA------TCAAGTTCCGG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................ACTGGGCAGCGCTACATCTG------------G..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGCGCCTCGGTA------------............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCACGACTATTCCGCCAGCAATGGT--------GGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCTAGTGT---GG.................................................................2411.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................CTGGGCAGCGCTACATCTG------------G..............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CGCCTCGGTA------------CAGGTC-AAG..................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................GAAACTGGGCAGCGCTACATCTG------------GCG............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............TATTCCGCCAGCAATGGT--------GGCTGCTCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-------------GCTAGTGT---GGCATTGCCCGC.......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................CTGCGGCGCCTCGGTA------------CAGGT.......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ACCACCAC---GGTGCTGCGGCGC...............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TATTCCGCCAGCAATGGT--------GGCTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TACATCTG------------GCGGT-------------------------------------------------------------------GGAGGC.................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................................................................................................................................................................................................................GGCCGAGACGACGACCACCA...............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CTCGGTA------------CAGGTC-AAGCTG----------------------------------------------------------------------------GC.................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................ACCACCACAACGACCACCAC..................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ACAACGACCACCACCAC---GG..........................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
CGGACCTCACGACTATTCCGCCAGCAATGGT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCATCAACTACAATCACCACAATCGCCATCACCAGCAACAGTTGCTGAAGCTGGGCAGCGCCACATCTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGGCGCAGCCGCGGCCGAGACGACGACCACCACAACGACCACCACCAC---GGTGCTGCGGCGCCTCGGTA------------CGGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCGAGTGT---GGCCTTGCCCGCA------TCTAGTTCCGGATCCAGCAG----------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................AGCAACAGTTGCTGAAGCTGGGC........................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................CGCGGCCGAGACGACGACCACC................................................................................................................................................................................................................................................2211.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................GCGCAGCCGCGGCCGAGACGACGAC....................................................................................................................................................................................................................................................2511.00100010000000000000
.............................GT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................AGCCGCGGCCGAGACGACGACC...................................................................................................................................................................................................................................................2211.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAA-------------GCGAGTGT---GGCCTTGCCC.........................................................2411.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CACAACGACCACCACCAC---............................................................................................................................................................................................................................1820.50101000000000000000
droSec2
CGGACCTCACGACTATTCCGCCAGCAATGGT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCATCAACTACAATCACCACAATCGCCATCACCAGCAACAGTTGCTAAAGCTGGGCAGCGCTACATCTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGGCGCAGCCGCGGCCGAGACGACGACCACCACAACGACCACCACCAC---GGTGCTGCGGCGCCTCGGTA------------CGGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCGAGTGT---GGCATTGCCCGCA------TCTAGTTCCGGATCCAGCAG----------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------GCGAGTGT---GGCATTGCCCGCA------................................................2211.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................C-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCGAGT........................................................................2111.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTG----------------------------------------------------------------------------GCGCCGAA-------------GCGAGTGT---GGCATTGC...........................................................2711.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCTG----------------------------------------------------------------------------GCGCCGAA-------------GCGAGTGT---GG.................................................................2211.0010010
.......................................................................................................................................................................................................................................CTG------------GCGGT-------------------------------------------------------------------GGAGGCAGTGG............................................................................................................................................................................................................................................................................1911.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGCGGCGCCTCGGTA------------CGGGT.......................................................................................................................................................................................2511.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTGCCCGCA------TCTAGTTCCGGATCC.................................2811.0011000
...................................................................................................................................................................................................................AAAGCTGGGCAGCGCTACATCTG------------GCGG...........................................................................................................................................................................................................................................................................................................................................................2711.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCCGCA------TCTAGTTCCGGATCCAGC..............................2811.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCGAGTGT---GGC................................................................2511.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTGCCCGCA------TCTAGTTCCGG.....................................2411.0011000
....................................................................................................................................................................................................................................................................................................................................................................................AC---GGTGCTGCGGCGCCTCGGTA------------CGGGT.......................................................................................................................................................................................2711.0010100
droYak3
CGGACCTCACGACTACTCCGCCAGCAATGGT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCATAAACTACAATCACCACAATCGCCATCATCAGCAGCAGTTGCTGAAGCTGGGCAGCGCTACATCTG------------GCGGCGGAGGCAGCGGCGCAGCTGCGGCGGAGACGACNNNNNNNNNNGCTGGGCAGCGCTACATCTGGCGGCGGAGGCAGCGGCGCAGCTGCGGCGGAGACGACGACCACCACAACGACCACTACCAC---GGTGCTGCGGCGCCTCGGTA------------CGGGTC-AAGCCG----------------------------------------------------------------------------CCGCCGAA-------------GCCAGTGT---AGCGTTGCCCGGA------TCTAGTTCCGGATCCGGCAG----------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGCGGCGCCTCGGTA------------CGG.........................................................................................................................................................................................2312.00202000000000
............................................CTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---AGCGTTGCCCGGA------TCTAGT..........................................2111.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-------------GCCAGTGT---AGCGTTGCC..........................................................2011.00100000010000
....................................................................................................................................................................................................................AAGCTGGGCAGCGCTACATCTG------------G..............................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...................................................................................................................................................................................................................GAAGCTGGGCAGCGCTACATCTG------------GC.............................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................CAC---GGTGCTGCGGCGCCTCGGTA------------CGGGT.......................................................................................................................................................................................2811.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................ACCACAACGACCACTACCAC---............................................................................................................................................................................................................................2011.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-------------GCCAGTGT---AGCGTTGCCCGG.......................................................2311.00101000000000
...............................................................................................................................................................................................................................................................................................................................................TGCGGCGGAGACGACGACCACCACAAC...........................................................................................................................................................................................................................................2711.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-------------GCCAGTGT---AGCGTTGCCCGGA------T...............................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................................................AGCGGCGCAGCTGCGGCGGA.............................................................................................................................................................................................................................................................2020.50100000100000
.................................................................................................................................................................................................................................................................AGCGGCGCAGCTGCGGCGGA................................................................................................................................................................................................................................................................................................................................2020.50100000100000
.....................................................................................................................................................................................................................................................................................................................................GCGGCGCAGCTGCGGCGGAGAC..........................................................................................................................................................................................................................................................2220.50100100000000
....................................................................................................................................................................................................................................................................................................................ATCTGGCGGCGGAGGCAGCGGCGCA........................................................................................................................................................................................................................................................................2520.50100000010000
..................................................................................................................................................................................................................................................................................................................ACATCTGGCGGCGGAGGC.................................................................................................................................................................................................................................................................................1820.50101000000000
..................................................................................................................................................................................................................................................................GCGGCGCAGCTGCGGCGGAGAC.............................................................................................................................................................................................................................................................................................................................2220.50100100000000
........................................................................................................................................................................................................................................................................................................................................................GACGACGACCACCACAAC...........................................................................................................................................................................................................................................1820.50100100000000
...................................................................................................................................................................................................................................ACATCTG------------GCGGCGGAGGC....................................................................................................................................................................................................................................................................................................................................................1820.50101000000000
.....................................................................................................................................................................................................................................ATCTG------------GCGGCGGAGGCAGCGGCGCA...........................................................................................................................................................................................................................................................................................................................................2520.50100000010000
droEre2
CGGACCTCACGACTACTCCGCCAGCAATGGT--------GGCTGCTCGAATCACTCA-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGCCATAAACTACAATCACCACAACCGCCATCACCAGCAGCAGTTGTTGAAGCTGGGCAGCGCTACATCTG------------GCGGC-------------------------------------------------------------------GGAGGCAGTGGCGCAGCTGCAGCCGAGACGACGACCACCACAACGACCACTACCAC---GGTGCTGCGGCGCCTCGGTA------------CGGGTC-AAGCTG----------------------------------------------------------------------------GCGCCGAA-------------GCCAGTGT---AGCCTTGCCCGGA------TCTAGTTCCGGATCCGGCAG----------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................A-------------------------------------------------------------------------------CAC-------GGTCACGACCTGGC---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGCGGCGCCTCGGTA------------CGGGT.......................................................................................................................................................................................2511.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................AACGACCACTACCAC---GGTGCTGCGGCG................................................................................................................................................................................................................2711.0011000000
....................................................................................................................................................................................................................................CATCTG------------GCGGC-------------------------------------------------------------------GGAGGCAGTGGC...........................................................................................................................................................................................................................................................................2311.0011000000
......................................................................................................................................................................................................................................................GCGGC-------------------------------------------------------------------GGAGGCAGTGGCGCA........................................................................................................................................................................................................................................................................2011.0011000000
...................................................................................................................................................................................................................................................................................................................................CAGTGGCGCAGCTGCAGCCGAG............................................................................................................................................................................................................................................................2211.0011000000
..........................................................................................................................................................................................................................................................................................................................................GCAGCTGCAGCCGAGACGACGACCACCA...............................................................................................................................................................................................................................................2811.0010000100
......................................................................................................................................................................................................AGCAGCAGTTGTTGAAGCT............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....................................................................................................................................................................................................................................ATCTG------------GCGGC-------------------------------------------------------------------GGAGGCAGTGGCG..........................................................................................................................................................................................................................................................................2311.0010000010

Generated: 05/18/2015 at 05:24 AM