ID:

dps_2755

 Coordinate:

XL_group1e:8445566-8445716 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.2 -13.1 -13.1

Flybase annnotation

exon [dpse_GLEANR_1171:2]; CDS [Dpse\GA17020-cds]; intron [Dpse\GA17020-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCCACGAGAGATCCCTCTCAACGGATGTGCTCTTTGGCCTGTTGCGTGAGGTGAGTGTTCCCTTGCCCCTTTTTTTGTTTGTCTTTCACTTGCATCGGTTGTGTGTTGTTGGTAAACATTTAATAGTAATATCAATATAAAGCATTTTACAAACGTTTCATATTCTCGAAATTGTTTCACATTGTCGAAATGTATACAAGACCTACTACATGGTATATAAATATATATTATAAATTGCTTAAAAATGACAC
*********************************************************************......(((((((.....(((......))).((((..((((((((.((........))..))))))))....))))...)))))))..........((((...(((...)))...))))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 SRR902011
testis
 SRR902012
CNS imaginal disc
 GSM444067
head
.......................................................................................................................................................................GAAATTGTTTCACATTGTCGA............................................................... 21 0 1 4.00 4 3 0 1 0 0 0
..........................................................................................................................................................................ATTGTTTCACATTGTCGAAA............................................................. 20 0 1 3.00 3 3 0 0 0 0 0
............................................................................................................................................................................................AATGTATACAAGACCTACTAC.......................................... 21 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................................ATACAAGACCTACTACATGG...................................... 20 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................................................................................................AAATATATATTATAAATTGCT............ 21 0 1 2.00 2 0 2 0 0 0 0
...................................................................................................................................................TACAAACGTTTCATATTCTCG................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0
....................................................................................................................................................................................ATTGTCGAAATGTATACAAGA.................................................. 21 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................................................................................TCGAAATTGTTTCACATTGTC................................................................. 21 0 1 2.00 2 1 0 0 0 0 1
......AGAGATCCCTCTCAACAGATGTGCTC........................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................AATTGTTTCACATTGTCGAA.............................................................. 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................TTTTTTTGTTTGTCTTTCACT................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................ATTCTCGAAATTGTTTCACAT..................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................GTTTCACATTGTCGAAATGT.......................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................CAACGGATGTGCTCTTTGGC..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0
..................................................................................CTTTCACTTGCATCGGTTGTG.................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................................CATCGGTTGTGTGTTGTTGGT.......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TTGCATCGGTTGTGTGTTGT.............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................TTCACATTGTCGAAATGTA......................................................... 19 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................CGAAATTGTTTCACATTGTC................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................CAAACGTTTCATATTCTCGAA................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..........................................TGCGTGAGGTGAGTGTTCCCT............................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................TATACAAGACCTACTACATGG...................................... 21 0 1 1.00 1 1 0 0 0 0 0
...................AACGGATGTGCTCTTTGGCCT................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................TTGTCGAAATGTATACAAGAC................................................. 21 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................................................AAATTGTTTCACATTGTCGAA.............................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................................TCTTTCACTTGCATCGGTTGT..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................TACAAGACCTACTACATGGTA.................................... 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................GGTTGTGTGTTGTTGGTAAAC...................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................TCACATTGTCGAAATGTATAC...................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.........GATCCCTCTCAACAGATGTGC............................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................TGTTTCACATTGTCGAAATGT.......................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGTATTGGCTGTGTGTTGTTG............................................................................................................................................ 21 3 19 0.32 6 6 0 0 0 0 0
.......................................................................................................................................................................................................................TATAAAAATATATTGTAACTTG.............. 22 3 13 0.23 3 3 0 0 0 0 0
..................................................................................................TAGTGTGTCGTTGGTAAAAA..................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0
...............................ATTTGGCCTGGTGCGGGAGG........................................................................................................................................................................................................ 20 3 14 0.07 1 1 0 0 0 0 0
................................................................................GTCTTCCACCTGCAACGGT........................................................................................................................................................ 19 3 18 0.06 1 1 0 0 0 0 0

Anti-sense strand reads

GGGTGCTCTCTAGGGAGAGTTGCCTACACGAGAAACCGGACAACGCACTCCACTCACAAGGGAACGGGGAAAAAAACAAACAGAAAGTGAACGTAGCCAACACACAACAACCATTTGTAAATTATCATTATAGTTATATTTCGTAAAATGTTTGCAAAGTATAAGAGCTTTAACAAAGTGTAACAGCTTTACATATGTTCTGGATGATGTACCATATATTTATATATAATATTTAACGAATTTTTACTGTG
***************************************************************......(((((((.....(((......))).((((..((((((((.((........))..))))))))....))))...)))))))..........((((...(((...)))...))))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902010
ovaries
 V112
male body		 M062
head
 SRR902011
testis
 SRR902012
CNS imaginal disc
....................................................................................................................................................................................................GTTCTGGATGATGTACCATAT.................................. 21 0 1 5.00 5 5 0 0 0 0 0 0
..........................................................................................................................................TTTCGTAAAATGTTTGCAAAG............................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0 0
............................................................................................................................................................................................................TGATGTACCATATATTTATAT.......................... 21 0 1 3.00 3 3 0 0 0 0 0 0
.................................................................................................................................................................TAAGAGCTTTAACAAAGTGTA..................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................................................................................CAAAGTATAAGAGCTTTAACAAAG......................................................................... 24 0 1 2.00 2 1 1 0 0 0 0 0
..................................................................................................................................................................................TGTAACAGCTTTACATATGTT.................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................................................................................AGCTTTACATATGTTCTGGAT.............................................. 21 0 1 2.00 2 1 0 1 0 0 0 0
.....................................................................................................................................................................................................TTCTGGATGATGTACCATATA................................. 21 0 1 2.00 2 2 0 0 0 0 0 0
................................................................................................................................................................ATAAGAGCTTTAACAAAGTGT...................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
................................................................................................................................................................................AGTGTAACAGCTTTACATATG...................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................................................................................GTAACAGCTTTACATATGTTC................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................TGTAAATTATCATTATAGTTATA................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................AGAGCTTTAACAAAGTGTAAC................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................TTATATTTCGTAAAATGTTTGC................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................TGTTTGCAAAGTATAAGAGCTT................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
..............................................ACTCCACTCACAAGGGAACGG........................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................TTTACATATGTTCTGGATGGT........................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
................................................................CGGGGAAAAAAACAAACAGAA...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................GCTTTACATATGTTCTGGAT.............................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................TAAAATGTTTGCAAAGTGTAA....................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0
.........................................................................................................................................................................................................GGATGATGTACCATATATTTA............................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................AATATTTAACGAATTTTTACT... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................AAGTATAAGAGCTTTAACA............................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................TCATTATAGTTATATTTCGTA.......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CAGCTTTACATATGTTCTGGA............................................... 21 0 1 1.00 1 0 0 0 0 0 0 1
.............................................................................................................................................CGTAAAATGTTTGCAAAGT........................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................TGTTTGCAAAGTATAAGAGCT.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................AGCTTTAACAAAGTGTAACAG................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................TGTTCTGGATGATGTACCATA................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TTACATATGTTCTGGATGATG.......................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................ATTATCATTATAGTTATATTT.............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................ATGATGTACCATATATTTATA........................... 21 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................TAACAGCTTTACATATGTTCT.................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................CTGGATGATGTACCATATATT............................... 21 0 1 1.00 1 1 0 0 0 0 0 0
GGGTGCTCTCTAGGGAGAGTT...................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................AGTGTAACAGCTTTACATA........................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................CATATGTTCTGGATGATGTAC....................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...........AGGGAGAGTTGTCTACACGAG........................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................................................................................AAGTGTAACAGCTTTACATATG...................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GATGTACCATATATTTAT............................ 18 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................ATGTTCTGGATGATGTACCATATAT................................ 25 0 1 1.00 1 0 0 0 0 1 0 0
................................................................................................................................................................................................ATATGTTCTGGATGATGTACCATAT.................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................TGGATGATGTACCATATATT............................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................CAAAGTATAAGAGCTTTAACAAAGTG....................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................AGCTTTAACAAAGTGTAACA.................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................CATATGTTCTGGATGATGTA........................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................TAAGAGCTTTAACAAAGTGT...................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................TTTGCAAAGTATAAGAGCTTT................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................GTGTAACAGCTTTACATATGT..................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................CATATGTTCTGGATGATGT......................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................ATGTTCTGGATGATGTACCATATATT............................... 26 0 1 1.00 1 0 0 1 0 0 0 0
.............GGAGAGTTGTCTACACGAGAA......................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................GTTCTGGATGATGTACCATATA................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................ATGTTTGCAAAGTATAAGAG.................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
............GGGAGAGTTGTCTACGCGAG........................................................................................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0
...................................................................CGAAAGAAACAAACAGATAGTG.................................................................................................................................................................. 22 3 6 0.17 1 1 0 0 0 0 0 0
..................................................................GGGAAAAAAATAGACAGAA...................................................................................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................TGATGTACCATAAAATTATGT.......................... 21 3 8 0.13 1 0 0 0 1 0 0 0
..........................................................................................ACATAACCGACACACAACAAC............................................................................................................................................ 21 3 19 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:8445516-8445766 + dps_2755 CCCACGAGAGATCCCTCTCAACGGATGTGCTCTTTGGCCTGTTGCGTGAGGTGAGTGTTCCCTTGCCCCTTTTTT---TGTTTGTCTTTCA---------------CTTGCATCG-------GTTGTGTGTTGTTGGTAAACATTTAATAGT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTCTCGAAAT-TG-TTTCACATTGTCGAAA-------TGTATAC--A--------AGACCTACTACATGGTATATAAATATATATTATAAATTGCTTAAA-----AATGACAC---
droPer2 scaffold_13:128128-128378 - CTCACGAGAGATCCCTCTCAACGGATGTGCTCTTTGGCCTGTTGCGTGAGGTGAGTATTCCCTTGCCCCTTTTTT---TGTTTGTCTTTCA---------------TTTGCATCG-------GTTGTGTGTTGTTGGTAAACATTTAATAGT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTCTCGAAAT-TG-TTTCACATTGTCGAAA-------TGTATAC--A--------AGACCTACTACATGGTGTATAAATATATATTATAAATTGCTTAAA-----AATGACAC---
droWil2 scf2_1100000004909:7104670-7104849 + CCCAA-----------------------------------------------------------------CTTTA---TGTTTGTTTTTAAAAGAAAACAAAAGACTTTG--TTAATTTTTTGTTG--------TGGTAAACATTTAATAATAA----GTAATATC--A--ATATAAAGCATTTTACAAACGATTTTCATGTTTTTTAAAT-T----TAACATTGCCAAAA-GT----TGTATAT--A----------TATCATC---------------------TTGATATCGATTAAG-----TATAATAA---
droVir3 scaffold_12932:1915733-1915866 + -------------------------------------------------------------------------------------------------------------------------------------TTGGTAAACATTTAATAT-----------TATCCAA--ATATAAAGCATTTTACAAACATTT--CATATTC---AAAT-T----TCACATTGCC-AAA-------TGTATAT--C---------GTA-TAT-----TATATATAAATA--TTTTAAAAATCACTTAAGAGACTAAAAACAAAAT
droMoj3 scaffold_6473:5477466-5477625 + TCT--------------------------------------------------------------------------------------CT---------------TTTAAATTA-------GTTGT---CCGTTGGTAAACATTTAATAA-----------TATCCAAATATATAAAGCATTTTACAAACATTT--CATATTT---AAAT-T----TCACATTGCC-AAA-------TGTATAT--ATTATTGTATGTAGTAATATA-TATATATAAATA--TTTTAAAAATCGCTTAAG-------AGAC-----
droGri2 scaffold_15203:1944406-1944539 - ------------------------------------------------------------------------------------------------------------------------------------GTTGATAAACATTTAATAA-----------TATCCAA--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAA-TT----------GCCAAATTGATGTATGTATAT--C--------GG-TATATT-----ATATATAAATA--TTTTATAAATCGCTTAAGGGAC-TAAAACAA---
droAna3 scaffold_12903:491033-491164 - -------------------------------------------------------------------------------------------------------------------------------------TTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAATTTTGTTTCGCATTGTCGAAA-------TGTATATGTA--------AG-ACTACC---------ATAAATA--TTTTATAAATGGCTTAAA-----AAATACAC---
droBip1 scf7180000395952:52175-52305 + -------------------------------------------------------------------------------------------------------------------------------------TTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AATT-TTGTTTCACATTGTCGAAA-------TGTATATGTA--------AG-ACTACC---------ATAAATA--TTTTATAAATCGCTTAAA-----AAATACAC---
droKik1 scf7180000301542:309406-309544 - -------------------------------------------------------------------------------------------------------------------------------------TTGTTAAACATTTAATATT-------TAATATC--A--ATATAAAGAATTTTACAAACGTTTTACATATTT---AATT-TTCATTCACATTGTCGAAA-------TGTATATATA---TAG-AGGCAG------A-TACATATCAATA--TTTTATACATT--TTACA-----AAAACTTA---
droFic1 scf7180000454073:900797-900936 - --------------------------------------------------------------------------------------------------------------------------GTTGTAT-CCGATGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--TATATTT---GAATTTTTTTCCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACT---------ATAAATA--TTTTATAAATTGCTTAAA-----AAATACAA---
droEle1 scf7180000491011:428706-428843 + --------------------------------------------------------------------------------------------------------------------------GTTGTAT-CCGTTGGTAAACATTTAATAAT--------ATTATC--A--ATATAAAGCATTTTACAAACGTTT--TATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACT---------ATAAATA--TTTTATAAATTGCTTACA-----AAAGACAA---
droRho1 scf7180000776513:20044-20181 - --------------------------------------------------------------------------------------------------------------------------GTTGTAT-CCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACT---------ATAAATA--TTTTATAAATTGCTTAAA-----AAAGACAA---
droBia1 scf7180000302041:1145026-1145153 + ------------------------------------------------------------------------------------------------------------------------------------GTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACC---------ATAAATA--CGTTATAAATTGCTTAAA------AGTACAA---
droTak1 scf7180000414562:74438-74574 - ------------------------------------------------------------------------------------------------------------------------------------GTTGGTAAACATTTAATAATAATATAATAATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACC---------ATAAATA--TTTTATAAATTGCTTAAA-----AAAGACAA---
droEug1 scf7180000409008:509433-509571 + --------------------------------------------------------------------------------------------------------------------------GTTGTAT-TTGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TTTCTTCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACT---------ATAAATA--TTTTATAAATTGCTTAAA-----AAAGACAA---
dm3 chrX:14097997-14098134 + --------------------------------------------------------------------------------------------------------------------------GTTGTAT-CCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-TCTCACATTGTCGAAA-------TGTATAT--A--------CGAACTACC---------ATAAATA--CTTTATAAATGGCTTAAA------AAGACAA---
droSim2 x:13309854-13310013 + T---------------------------------------------------------------------TGTTTAGTTTTTTTTT-------------------------------TTTTTGTTGTAT-CCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------CGCACTACC---------ATAAATA--CTTTATAAATGGCTTAAA------AAGACAA---
droSec2 scaffold_20:702466-702622 + T---------------------------------------------------------------------TTTTT---TTTTTTTT-------------------------------TTTTTGTTGTAT-CCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------CGCACTACC---------ATAAATA--CTTTATAAATGGCTTAAA------AAGACAA---
droYak3 X:8351813-8351938 + --------------------------------------------------------------------------------------------------------------------------GTTGTAT-CCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT--------------ATA-------TGTATAT--A--------CGAACTACC---------ATAAATA--CTTTATAAATTGCTTAGA-----AAAGACAA---
droEre2 scaffold_4690:12832372-12832510 - --------------------------------------------------------------------------------------------------------------------------GTTGTAT-GCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTCACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------CGCACTACC---------ATAAATA--CTTTATAAATTGCTTAAA-----AAAGACAA---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCCACGAGAGATCCCTCTCAACGGATGTGCTCTTTGGCCTGTTGCGTGAGGTGAGTGTTCCCTTGCCCCTTTTTT---TGTTTGTCTTTCA---------------CTTGCATCG-------GTTGTGTGTTGTTGGTAAACATTTAATAGT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTCTCGAAAT-TG-TTTCACATTGTCGAAA-------TGTATAC--A--------AGACCTACTACATGGTATATAAATATATATTATAAATTGCTTAAA-----AATGACAC---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................GAAAT-TG-TTTCACATTGTCGA........................................................................................2114.0040300001000
.................................................................................................................................................................................................................AT-TG-TTTCACATTGTCGAAA-------...............................................................................2013.0030300000000
.....................................................................................................................................................................................................................................AA-------TGTATAC--A--------AGACCTACTAC..................................................2112.0020200000000
.................................................................................................................................................................................................................................................ATAC--A--------AGACCTACTACATGG..............................................2012.0020200000000
....................................................................................................................................................................................................................................................................................AAATATATATTATAAATTGCT....................2112.0020000000200
........................................................................................................................................................................................TACAAACGTTT--CATATTCTCG..............................................................................................................2112.0020100001000
.............................................................................................................................................................................................................................ATTGTCGAAA-------TGTATAC--A--------AGA..........................................................2112.0020200000000
............................................................................................................................................................................................................TCGAAAT-TG-TTTCACATTGTC..........................................................................................2112.0020100010000
................................................................................................................................................................................................................AAT-TG-TTTCACATTGTCGAA.......................................................................................2011.0010100000000
.....................................................................TTTTTT---TGTTTGTCTTTCA---------------CT.................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................ATTCTCGAAAT-TG-TTTCACAT..............................................................................................2111.0010100000000
.....................................................................................................................................................................................................................G-TTTCACATTGTCGAAA-------TGT............................................................................2011.0010100000000
..................CAACGGATGTGCTCTTTGGC.......................................................................................................................................................................................................................................................................................2011.0010000000001
.....................................................................................CTTTCA---------------CTTGCATCG-------GTTGTG.............................................................................................................................................................................................2111.0010100000000
..............................................................................................................CATCG-------GTTGTGTGTTGTTGGT...................................................................................................................................................................................2111.0010100000000
...........................................................................................................TTGCATCG-------GTTGTGTGTTGT.......................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................TTCACATTGTCGAAA-------TGTA...........................................................................1911.0010100000000
.............................................................................................................................................................................................................CGAAAT-TG-TTTCACATTGTC..........................................................................................2011.0010100000000
..........................................................................................................................................................................................CAAACGTTT--CATATTCTCGAA............................................................................................................2111.0010100000000
..........................................TGCGTGAGGTGAGTGTTCCCT..............................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................TATAC--A--------AGACCTACTACATGG..............................................2111.0010100000000
...................AACGGATGTGCTCTTTGGCCT.....................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................TTGTCGAAA-------TGTATAC--A--------AGAC.........................................................2111.0010000000010
...............................................................................................................................................................................................................AAAT-TG-TTTCACATTGTCGAA.......................................................................................2111.0010100000000
....................................................................................TCTTTCA---------------CTTGCATCG-------GTTGT..............................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................TAC--A--------AGACCTACTACATGGTA............................................2111.0010100000000
..................................................................................................................G-------GTTGTGTGTTGTTGGTAAAC...............................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................TCACATTGTCGAAA-------TGTATAC--......................................................................2111.0010100000000
....................................................................................................................................................................................................................TG-TTTCACATTGTCGAAA-------TGT............................................................................2111.0010100000000
droPer2
CTCACGAGAGATCCCTCTCAACGGATGTGCTCTTTGGCCTGTTGCGTGAGGTGAGTATTCCCTTGCCCCTTTTTT---TGTTTGTCTTTCA---------------TTTGCATCG-------GTTGTGTGTTGTTGGTAAACATTTAATAGT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTCTCGAAAT-TG-TTTCACATTGTCGAAA-------TGTATAC--A--------AGACCTACTACATGGTGTATAAATATATATTATAAATTGCTTAAA-----AATGACAC---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................CAACGGATGTGCTCTTTGGCCT.....................................................................................................................................................................................................................................................................................2211.001001000
.............................................................................................................................................................................................................CGAAAT-TG-TTTCACATTGTC..........................................................................................2011.001010000
droWil2
CCCAA-----------------------------------------------------------------CTTTA---TGTTTGTTTTTAAAAGAAAACAAAAGACTTTG--TTAATTTTTTGTTG--------TGGTAAACATTTAATAATAA----GTAATATC--A--ATATAAAGCATTTTACAAACGATTTTCATGTTTTTTAAAT-T----TAACATTGCCAAAA-GT----TGTATAT--A----------TATCATC---------------------TTGATATCGATTAAG-----TATAATAA---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................A-GT----TGTATAT--A----------TATCATC---------------------TTG............................2111.00101000
..................................................................................................................................................................................................................................CAAAA-GT----TGTATAT--A----------TATCATC---------------------...............................2211.00101000
droVir3
-------------------------------------------------------------------------------------------------------------------------------------TTGGTAAACATTTAATAT-----------TATCCAA--ATATAAAGCATTTTACAAACATTT--CATATTC---AAAT-T----TCACATTGCC-AAA-------TGTATAT--C---------GTA-TAT-----TATATATAAATA--TTTTAAAAATCACTTAAGAGACTAAAAACAAAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................TTGGTAAACATTTAATAT-----------TAT........................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................ATTGCC-AAA-------TGTATAT--C---------GTA-T.......................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCT--------------------------------------------------------------------------------------CT---------------TTTAAATTA-------GTTGT---CCGTTGGTAAACATTTAATAA-----------TATCCAAATATATAAAGCATTTTACAAACATTT--CATATTT---AAAT-T----TCACATTGCC-AAA-------TGTATAT--ATTATTGTATGTAGTAATATA-TATATATAAATA--TTTTAAAAATCGCTTAAG-------AGAC-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
------------------------------------------------------------------------------------------------------------------------------------GTTGATAAACATTTAATAA-----------TATCCAA--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAA-TT----------GCCAAATTGATGTATGTATAT--C--------GG-TATATT-----ATATATAAATA--TTTTATAAATCGCTTAAGGGAC-TAAAACAA---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
-------------------------------------------------------------------------------------------------------------------------------------TTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAATTTTGTTTCGCATTGTCGAAA-------TGTATATGTA--------AG-ACTACC---------ATAAATA--TTTTATAAATGGCTTAAA-----AAATACAC---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
-------------------------------------------------------------------------------------------------------------------------------------TTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AATT-TTGTTTCACATTGTCGAAA-------TGTATATGTA--------AG-ACTACC---------ATAAATA--TTTTATAAATCGCTTAAA-----AAATACAC---SizeHit CountTotal NormTotal
No Reads
droKik1
-------------------------------------------------------------------------------------------------------------------------------------TTGTTAAACATTTAATATT-------TAATATC--A--ATATAAAGAATTTTACAAACGTTTTACATATTT---AATT-TTCATTCACATTGTCGAAA-------TGTATATATA---TAG-AGGCAG------A-TACATATCAATA--TTTTATACATT--TTACA-----AAAACTTA---SizeHit CountTotal NormTotal
No Reads
droFic1
--------------------------------------------------------------------------------------------------------------------------GTTGTAT-CCGATGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--TATATTT---GAATTTTTTTCCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACT---------ATAAATA--TTTTATAAATTGCTTAAA-----AAATACAA---SizeHit CountTotal NormTotal
No Reads
droEle1
--------------------------------------------------------------------------------------------------------------------------GTTGTAT-CCGTTGGTAAACATTTAATAAT--------ATTATC--A--ATATAAAGCATTTTACAAACGTTT--TATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACT---------ATAAATA--TTTTATAAATTGCTTACA-----AAAGACAA---SizeHit CountTotal NormTotal
No Reads
droRho1
--------------------------------------------------------------------------------------------------------------------------GTTGTAT-CCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACT---------ATAAATA--TTTTATAAATTGCTTAAA-----AAAGACAA---SizeHit CountTotal NormTotal
No Reads
droBia1
------------------------------------------------------------------------------------------------------------------------------------GTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACC---------ATAAATA--CGTTATAAATTGCTTAAA------AGTACAA---SizeHit CountTotal NormTotal
No Reads
droTak1
------------------------------------------------------------------------------------------------------------------------------------GTTGGTAAACATTTAATAATAATATAATAATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACC---------ATAAATA--TTTTATAAATTGCTTAAA-----AAAGACAA---SizeHit CountTotal NormTotal
No Reads
droEug1
--------------------------------------------------------------------------------------------------------------------------GTTGTAT-TTGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TTTCTTCACATTGTCGAAA-------TGTATAT--A--------AG-ACTACT---------ATAAATA--TTTTATAAATTGCTTAAA-----AAAGACAA---SizeHit CountTotal NormTotal
No Reads
dm3
--------------------------------------------------------------------------------------------------------------------------GTTGTAT-CCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-TCTCACATTGTCGAAA-------TGTATAT--A--------CGAACTACC---------ATAAATA--CTTTATAAATGGCTTAAA------AAGACAA---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................AAGCATTTTACAAACGTTT--CA......................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................ATAAATGGCTTAAA------AAGACA....2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TTTACAAACGTTT--CATATTC---A.............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TC---AAAT-TT-TCTCACATTGTCG.........................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................ATAT--A--------CGAACTACC---------ATAAATA--..................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TTTATAAATGGCTTAAA------AAGA......2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..............................................................................................................................................................................................................................TTGTCGAAA-------TGTATAT--A--------CGA..........................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AAATA--CTTTATAAATGGCTTA..................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................ATAAAGCATTTTACAAACGTT...........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AATATC--A--ATATAAAGCATTTT....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TTATAAATGGCTTAAA------AA........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TAAAGCATTTTACAAACGTTT--........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AAAT-TT-TCTCACATTGTCGAA.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TCTCACATTGTCGAAA-------TGTATA.........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TATAT--A--------CGAACTACC---------ATAAATA--CTTTATA...........................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AT--------AATATC--A--ATATAAAGCATT......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................T--A--------CGAACTACC---------ATAAATA--CTTTATA...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................T-CCGTTGGTAAACATTTAATAAT--------A............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TCTCACATTGTCGAAA-------TGTATAT--A--------CGAAC........................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................GTAT-CCGTTGGTAAACATTTAATAAT--------AA...........................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TAT-CCGTTGGTAAACATTTAA.........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................T-TCTCACATTGTCGAAA-------TGT............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TGTATAT--A--------CGAACTACC---------ATAAATA--CT................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TCACATTGTCGAAA-------TGTATAT--A--------CGAAC........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................AAT-TT-TCTCACATTGTCGAAA-------...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................GTTGGTAAACATTTAATAAT--------A............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CAAACGTTT--CATATTC---AAAT-T........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................T-CCGTTGGTAAACATTTAATAAT--------AATA.........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................AAT--------AATATC--A--ATATAAAGC.........................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................TCGAAA-------TGTATAT--A--------CGAACTA......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................ATAAATA--CTTTATAAATGGCT....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................C---------ATAAATA--CTTTATAAATGGCTT...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CATTGTCGAAA-------TGTATAT--A--------CG...........................................................2111.0010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................ATAAATGGCTTAAA------AAGACAA---2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CGTTGGTAAACATTTAATAAT--------.............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TT-TCTCACATTGTCGAAA-------TGT............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TGTCGAAA-------TGTATAT--A--------CGAACTACC---------AT.........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................ATATTC---AAAT-TT-TCTCACATT.............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AAAGCATTTTACAAACGTTT--C.......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................AAT--------AATATC--A--ATATAAAGCAT.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................TAT--A--------CGAACTACC---------ATAAATA--C.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................T-CCGTTGGTAAACATTTA..........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................ATAT--A--------CGAACTACC---------ATACCA.....................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATAAATGGCTTAAA------AAA.......1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
T---------------------------------------------------------------------TGTTTAGTTTTTTTTT-------------------------------TTTTTGTTGTAT-CCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------CGCACTACC---------ATAAATA--CTTTATAAATGGCTTAAA------AAGACAA---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................A-------TGTATAT--A--------CGCACTACC---------AT.........................................2012.00200001100000000000
...........................................................................................................................TTGTAT-CCGTTGGTAAACATT............................................................................................................................................................................2112.00200001000000001000
......................................................................................................................TTTTGTTGTAT-CCGTTGGTAA.................................................................................................................................................................................2112.00220000000000000000
...........................................................................................................................TTGTAT-CCGTTGGTAAACAT.............................................................................................................................................................................2011.00100001000000000000
.........................................................................................................................TGTTGTAT-CCGTTGGTAA.................................................................................................................................................................................1811.00101000000000000000
..................................................................................................................................................................................................................T-TT-CCTCACATTGTCGAAA-------TGT............................................................................2211.00101000000000000000
....................................................................................................................................................................................................................................AAA-------TGTATAT--A--------CGCACTACC---------...........................................2011.00100001000000000000
..................................................................................................................................................................................................................T-TT-CCTCACATTGTCGAAA-------TG.............................................................................2111.00110000000000000000
................................................................................................................................T-CCGTTGGTAAACATTTAATAAT--------AATA.........................................................................................................................................................2711.00100000010000000000
.....................................................................................T-------------------------------TTTTTGTTGTAT-CCGTTGGT...................................................................................................................................................................................2111.00101000000000000000
droSec2
T---------------------------------------------------------------------TTTTT---TTTTTTTT-------------------------------TTTTTGTTGTAT-CCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------CGCACTACC---------ATAAATA--CTTTATAAATGGCTTAAA------AAGACAA---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................AAT-TT-CCTCACATTGTCGAA.......................................................................................2011.0010100
........................................................................................................................TTGTTGTAT-CCGTTGGTAAACA..............................................................................................................................................................................2211.0010001
....................................................................................TT-------------------------------TTTTTGTTGTAT-CCGTTGG....................................................................................................................................................................................2111.0011000
droYak3
--------------------------------------------------------------------------------------------------------------------------GTTGTAT-CCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTTACAAACGTTT--CATATTC---AAAT-TT--------------ATA-------TGTATAT--A--------CGAACTACC---------ATAAATA--CTTTATAAATTGCTTAGA-----AAAGACAA---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................TTTTACAAACGTTT--CATATTC---AAAT-T........................................................................................................2611.00101000000000
droEre2
--------------------------------------------------------------------------------------------------------------------------GTTGTAT-GCGTTGGTAAACATTTAATAAT--------AATATC--A--ATATAAAGCATTTCACAAACGTTT--CATATTC---AAAT-TT-CCTCACATTGTCGAAA-------TGTATAT--A--------CGCACTACC---------ATAAATA--CTTTATAAATTGCTTAAA-----AAAGACAA---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................TT-CCTCACATTGTCGAAA-------TGT............................................................................2111.0011000000

Generated: 05/18/2015 at 05:23 AM