ID:

dps_2720

 Coordinate:

XL_group1e:6583283-6583433 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.1 -3.1 -3.0

Flybase annnotation

CDS [Dpse\GA26201-cds]; exon [dpse_GLEANR_305:2]; intron [Dpse\GA26201-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+
mature
star
  1. Unknown_group_205:9711-9729 +
  2. XL_group1e:3065868-3065886 +
  3. dps_2720  XL_group1e:6583371-6583389 -
  4. 2:7142279-7142297 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTAATCCAATGCTTTTTGCTTGTTTCTTTTCTGCTTTCTTTTCTTCCTTTTACTGATTTCTTTTGTTTATGTTGTTTTGCACTCTACTCGAACAACCAACAACAACCAACAACAACAACAACAACAACAAACAACAACTAAATGCATCATCATCAACATCCTACAACATCCTACGGGCATCCGAACCGCACTGAACCACAGGATCTTACATTCCAGGGCTCGGGTTATGCGATGTCACCATCGATGGGTGG
**********************************************************************************************...............................................................................(((.........))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M062
head
 SRR902010
ovaries
 GSM343916
embryo
 V112
male body
............................................................................................................................................................................................................CTTACATTCCAGGGCTCGG............................ 19 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................TTCCAGGGCTCGGGTTATGCGATGTC............... 26 0 1 1.00 1 0 1 0 0 0
....................................TCTTTTGTTCCTTTTACTGA................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0
.....................................................................................................................................................................................................................CAGGGCTCGGGTTATGCGATGTC............... 23 0 1 1.00 1 0 0 0 1 0
....................................................................................................................................................................................CCGAACCGCACTGAACCACAG.................................................. 21 0 1 1.00 1 0 0 0 0 1
..............................................................................................ACCAACAACAACCAACAAC.......................................................................................................................................... 19 0 4 0.25 1 1 0 0 0 0

Anti-sense strand reads

GATTAGGTTACGAAAAACGAACAAAGAAAAGACGAAAGAAAAGAAGGAAAATGACTAAAGAAAACAAATACAACAAAACGTGAGATGAGCTTGTTGGTTGTTGTTGGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGATTTACGTAGTAGTAGTTGTAGGATGTTGTAGGATGCCCGTAGGCTTGGCGTGACTTGGTGTCCTAGAATGTAAGGTCCCGAGCCCAATACGCTACAGTGGTAGCTACCCACC
**************************************************...............................................................................(((.........))).............********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M022
male body		 GSM343916
embryo
 GSM444067
head
 SRR902011
testis
.........................................................................................................................................................CCTGTAGGATGTTGGAGGA............................................................................... 19 3 16 14.94 239 135 54 50 0 0 0
..........................................................................................................................................................CTGTAGGATGTTGGAGGA............................................................................... 18 2 4 9.50 38 31 4 3 0 0 0
.....................................................................................................................................................AGTAGTTGTACGATGATGAAGG................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................GTAGTTGTACGATGATGAAGG................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................TAGTTGTACGATGATGAAGG................................................................................ 20 3 8 0.88 7 7 0 0 0 0 0
......................................................................................................................................................GTAGTTGTACGATGATGAAG................................................................................. 20 3 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................TTTACGTAGTAATAGTTGTAC........................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0
....................................AGAAAAGGAGGCGAATGACTA.................................................................................................................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0
...................................AAGAAAAGGAGGCGAATGACTA.................................................................................................................................................................................................. 22 3 3 0.33 1 0 1 0 0 0 0
.........................................................................................................................................................................................................CTAGATTGGAAGGTCCGGAG.............................. 20 3 6 0.33 2 2 0 0 0 0 0
..........................................................................................................................................TTTTACGTAGTAATAGTTG.............................................................................................. 19 2 7 0.29 2 2 0 0 0 0 0
.......................................................................................................................................................TAGTTGTACGATGATGAAG................................................................................. 19 3 16 0.25 4 3 1 0 0 0 0
.............................AGACCAAAGAAAGGAAGGAAAA........................................................................................................................................................................................................ 22 2 4 0.25 1 1 0 0 0 0 0
......................................................................................................................................................GTAGTTGTACGATGATGAA.................................................................................. 19 3 18 0.22 4 1 2 0 0 1 0
........................AGAAAAGAGGGAAGAAAAGAA.............................................................................................................................................................................................................. 21 2 5 0.20 1 1 0 0 0 0 0
........................................................................................................................................................ACCTGTAGGATGTTGGAGGA............................................................................... 20 3 5 0.20 1 1 0 0 0 0 0
.....................................................................................................................................................AGTAGTTGTACGATGATG.................................................................................... 18 2 16 0.19 3 2 0 0 0 1 0
.......................................................................................................................................................TAGTTGTAGAATGTTGTGG................................................................................. 19 2 6 0.17 1 0 0 0 1 0 0
.............................................................................................TTGGATATTGTTGGTTTTTGTT........................................................................................................................................ 22 3 18 0.11 2 0 0 0 0 0 2
....................................................................................................................................................GAGTAGTTGTAGGTTGTTG.................................................................................... 19 2 11 0.09 1 1 0 0 0 0 0
.................................GAACGAAAAGAAGGAAAAAGA..................................................................................................................................................................................................... 21 2 19 0.05 1 1 0 0 0 0 0
...................................................................................................................GTTGTTGTTGTTGTTTGTT..................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................TTGTTGTTGTTGTTGTTGTTG........................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................TCTGTAGGATGTTGGAGGA............................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................GTAGGATGTTGGAGGAACC............................................................................ 19 3 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................ACCCTATAGTGGTAGATAC..... 19 3 20 0.05 1 1 0 0 0 0 0
..................................................................................................TTTTGTTGGTTGTTGTTGT...................................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:6583233-6583483 - dps_2720 CTAA-----------TC-CAATGC---TTTTTGCTTGTTTCTTTTC---------TGCTTTCT--TTTCTTCC-------TTTTACTGATTTC--TTTT--GTTTATGTTGTTTTGCAC-TCTACTCGA----ACAA---------------------------------------------------------------------------------------------------------CCAACAACAA------------CCA--AC-------------AA-CAA------------------------CAACAACAACAACA---------------------------AACAA-CAACTA---------A---------------ATGCATCATCATCAACATCCTACAACATCCTACGGGCATC-----CGA---ACC--G---------------CACTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---TTATGCGATGTCACCATCGATGGGT------GG
droPer2 scaffold_21:1595479-1595717 - CTAA-----------TC-CAATGC---TTTTTGCTTGTTTCTTTTA---------TGCTTTCT--TTTCTTCC-------TTTTACTGATTT----CTTTCGTTTATGTTGTTTTGCAC-TCTACTCGA----ACAA---------------------------------------------------------------------------------------------------------CCAACA---A------------CCA--AC-------------AACAAA------------------------CAACAACAACAACA---------------------------AAATG-----------------------------------CATCATCATCAACATCCTACAACATCCTACGGGCATC-----CGA---ACC--G---------------CACTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---TTATGCGATGTCACCATCGATGGGT------GG
droWil2 scf2_1100000004963:2952884-2953098 - CAAA-----------CC-AAACGCTTTT---TTTTTGTTTTT---CTTT-----TT-G--GTTTT--T--ATTTTGTTTTTC-------------TTTTATGTTTAATTTTT-CATAAC-GCG-----C----CCACG-----CT------------------------------------GC--------------T------GATT----AC------------T--------------GCAAAC--------------------CACAAA---------TCAATCCA------------------------C---------AACA---------------------------AATCG----------------------------------------AAA----------------------------T-CGATCGA---AAT--GGTGAAA---------ATCTCAA-T-GCAGGATCTTACATTCCAGGGCTCGGGTGGTTATCCCATGTCACCACTGG---GTGTGGCCGG
droVir3 scaffold_12928:7458428-7458689 - dvi_9275 CTAA-----------CC-CATTGCCGCTTTGT--TTTCTTCT--TC-TT------TTCTCTCT--TATTTT---------TC-------------TTT----TTGATTTTTC----------------GAAATTCGTTTTGT---TCATCATCGTTATCGTTATATT--------------GTCATTGCACACACATCACGCAC---CAATCGAACAATCGAACAATCGAACAATTGA-A------------------------------CAA---------TCGAACAA------------------------TTGAACAATCGAAC---------------------------AATTG-A-----------------------------------------------------------------------------------C--AATCGAT----CAATTTGAAAAAAC-CCAGGATCTTACATTCCAGGGCTCGGG---CTATCCAATGTCACCATTGG---GTGTCGCTGG
droMoj3 scaffold_6473:2582692-2582752 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACC-AAAGGATCTTACATTCCAGGGCTCGGG---CTATCCAATGTCACCGTTGG---GTGTGGCTGG
droGri2 scaffold_15081:3239559-3239799 + TTT--------------------------TTTT-----TT----TA-TTTTCTTT--T--TATTT---------------TC-------------TTTCTAATCGTTTTC------------------A----TCATTATCA---TCATCATCGTTATCGTTAT--TGCCATCATCTAATAATCAATGC----------------------------------------------------ACCACAC---A------------CTA---------------------CG------------------------CACTGCCAACAACAAAAA-----------------------AACCG-----------------------------------AATCGTTATCGATAACCGAT---ATCCGATAAT---T-CGATGAATTGAAT--GA---A-----------AACG-AAC-ACAGGATCTTACATTCCAGGGCTCGGGAGGGTATCCGATGTCACCATTGA---GTGGCGC---
droAna3 scaffold_13117:2160379-2160660 - TTAATTCGATACTAACCTTCATTTCGCTT--TGCTTTCTT----TATTT--------T-TTCT--TTTCTTTT-------TTTCA-TTATCC---TTTTGGCCCGATTTTGT-TTGCAC-TCC-----A----CCACCAC---CACC---------------ACCA---------------------------------------------CGT------------CCAACAACACCA-CCACCA-CA-----------------------------------------A------------------------C---AACAACAACA---------------------------AACCAACCAACCAACCAA--CAACTACAACAAACAAAATTCA-CATCATC----------------------------CAACGGATATAAC--GATGGCCATCAT---CCACTGAA-A-ACAGGATCTTACATTCCAGGGCTCGGG---CTATACCATGTCGCCGCTGG---GCGTCGCCGG
droBip1 scf7180000395304:31732-32005 + CTAA-----------CCTTCATTTCGCTT--TGCTTTCTT----TATG------------TCT--TTTCTTTT--------T----TGATTTCAATTCTGCCCCGATTTTGT-TTGCACCTCC-----A----CCAACACCACCACC---------------ACCAC--------------GT------------------------CCA-CGA------------CC-ATCATGTC---CACCAACC---A------------CCACAACAA--------------CAA------------------------CAACAACAACAACA---------------------------AACAA-CAAACAAACAAA--CA---------------ATCCA-CATCAT---------------------------T-CGATGGATAAAAC--GATGGGAATCAT---CAACTGAA-A-ACAGGATCTTACATTCCAGGGCTCGGG---CTATACCATGTCGCCGCTGG---GCGTTGCCGG
droKik1 scf7180000302398:486759-486964 - CTAA-----------CA-CCATGCCGCTT-TTGCTCCTTT-----ATTT--------CGTTCT--TTTCTTT----T---TC--------TTC--CATTACGTTGATTTCGT-TTGCAC-TCG-----A----TCAAT-----CA------------------------------------AT------------------------CAATCAA------------TCGAAC---------ACCAAT--------------------CACCAA---------TCAATCAA------------------------CCAAACCAACCAC---------------------------------------------------------------------------------------------------------------G---------AATGGGA----T---CTTCTGAACCAACAGGATCTTACATTCCAGGGCTCGGG---CTACACACTGTCGCCATTGG---GCG---CCGG
droFic1 scf7180000454077:2060046-2060327 + CTAA-----------CC-CCATGCCGCTTTTTGCTCGTTT-----ATTT--------T-TTCTTT--T-------------C-------------TTTTGCGTTGATTTTGT-TTGCAC-T--ACTCAA----CCAACC-AACCA------------------------------------AT------------------------CAATCAA------------TCAATCAAACGAACCACCAACC---A------------CCACACGAA---------TCAATCAACA----ACACCACCAACCAACCAAC---TACAACAACA---------------------------AATCA-CCAATCAACCAA--CA---------------AC-CA-ACTCATCAT------------------------T-AAACCGA---AACGTGATGGGA----T---CTTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGTTTCCGG
droEle1 scf7180000491006:1443704-1443976 - CTAA-----------CC-CCATGCTGCTTTTTGCTTGTTT-----ATTT--------T--TCT--TTTTTCTT---T---TC-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAAT-----CA------------------------------------AT------------------------CGTTCGT------------TCGATCAAATCA-ACACCACCA---A------------CCACACCAATCAAATCAATCAATCAACAACCAA-----------------CACCACCAACAACAAACC-----------------------AACTA-CCAATCAACCAC--CA---------------AC-CA-ACTCATCA---------------------------AAACCGA---AAC--GATGGGA----T---CTTCTCAATC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGT------
droRho1 scf7180000763611:274358-274601 + CTAA-----------CC-CCAAGCCGCTTTTTGCTTGTTT----TA-TT--------T--TCT--TTTCTT-----T---TC-------------TTTTGCATTGATTTTGC-TTGCAC-TCA-----A----CCA---------------------------------------------AT------------------------CAATCGA------------TTGATCAAATCA-ACACCACCA---A------------CCACACCAA---------TCAACCAACA----A-----------------CACCACCAACAACA---------------------------AACCA-CCAATA---------A---------------AT-CA-ACTCATCAA--------------------------AAACCAA---AAC--GATGGGT----T---CTTCTGAATC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAACATGTCGCCGCTGG---GCGT------
droBia1 scf7180000301623:228849-229021 + CAAT---------------------------------------------------------------------------------------------------------------------CA-----A----TCAAC-------------------------------------------------------------------------------------------------------AACACCA---A------------CTACAACAA--------------------------------------------CAACAACAACAACAACAACAACTACTACAACAACAACAAACCA-CCAATC---------A---------------AC-CA-ACTCATCAA------------------------CCAAACCGA---ATC--GATGGGA----C---GTTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGT------
droTak1 scf7180000415141:16365-16625 - CTAA-----------CC-CATTGCCGCTTTTTGCTCGTTT-----ATTT--------T--TCT--TTTCTCTT---T---TA-------------TTTTGCATTGATTTTGT-TTGCAC-TCA-----A----CCAAT-----CA------------------------------------AT------------------------CAATCGA------------TCGATCAAATCA-ACACCACCA---ACCAACCAACCAACCACACCAA---------TCAATCAACA----A-----------------CAACACCAACAACA---------------------ACAACAAAACG-AAAACC---------A---------------AC-CA-ACTCATCAA--------------------------AAACCGA---ATC--GATGGGA----T---CTT--------ACAGGATCTTACATTCCAGGGCTCGGG---ATACAACATGTCGCCGCTGG---GCGT------
droEug1 scf7180000409064:24842-25072 - TTATTTTTATGCTAACT-CCATTCCGCTTTTTGCTCGTTT-----ATTT--------T----------------------TC-------------TTTTGCGT----TTTTT-TTGCAT-TCA-----A----CCAA-------------------------------------------------------------------------TCGA------------TCGATTAAATCA-AAACCACCA---A------------TTACACCAA---------CCAACCAA------------------------CAACAC---CAACA---------------------------AACCA-CCAATC---------A---------------AC-AA-ACTCATCTA--------------------------AAATCGA---AAC--GATGGGA----T---CTTTTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGT------
dm3 chrX:7947275-7947528 - CTAA-----------CC-CCATGCTGCTTTTTGCTCGTTT----TA-TT--------T--TCT--TT---------T---TC-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAACC-AACCA------------------------------------AT------------------------CAATCGA------------TCGATCAAATCA-ACACCAACA---A------------CCACACCAA---------TCAATCAACA----A-----------------CACCAACAACAACA---------------------------AACCA-CAAATC---------A---------------AC-CA-AATCATCAA--------------------------AAACCGA---AAC--GATGGGT----C---ATTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCCGG
droSim2 x:7519833-7520078 - CTAA-----------CC-CCATGCTGCTTTTTGCTCGTTT----TA-TT--------T--TCTTT--T-------------C-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAAC-----CA------------------------------------AT------------------------CAATCGA------------TCGATCAAATCA-ACACCAACA---A------------CCACACCAA---------TCAATCAA------------------------CAACACCAACAACA---------------------------AACCA-CAAATC---------A---------------AC-CA-AATCATCAA--------------------------AAACCGA---AAC--GATGGGT----C---ATTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCCGG
droSec2 scaffold_44:31599-31843 - CTAA-----------CC-CCATGCTGCTT-TTGCTCGTTT----TA-TT--------T--TCTTT--T-------------C-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAAC-----CA------------------------------------AT------------------------CAATCGA------------CCGATCAAATCA-ACACCAACA---A------------CCACACCAA---------TCAATCAA------------------------CAACACCAACAACA---------------------------AACCA-CAAATC---------A---------------AC-CA-AATCATCAA--------------------------AAACCGA---AAC--GATGGGT----C---ATTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCCGG
droYak3 X:13364802-13365062 + CTAA-----------CC-CCATGCTGCTTTTTGCTCGTTT-----ATTT--------T--TCTTT--T-------------C-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAAC-----CA------------------------------------AT------------------------CAATCGA------------TCGATCAAATCA-ACACCAACAACAA----CC-----ACAACACCAA---------TCAATCAA------------------------CAACACCAACAACA---------------------------AACCA-CAAATCAACCAAATCA---------------AC-CA-AATCATCAA--------------------------AAACCGA---AAC--GATGGGA----C---ATTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTTG---GCGTCTCCGG
droEre2 scaffold_4690:16856165-16856414 - CTAA-----------CC-CCATGCTGCTTTTTGCTCGTTT-----ATTT--------T--TCTTT--T-------------C-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAACC-AATAA------------------------------------AT------------------------CAATCGA------------TCGATCAAATCA-ACACCAACA---A------------CCACACCAA---------TCAATCAA------------------------CAACACCAACAACA---------------------------AACCA-CAAATC---------A---------------AC-CA-AATCATCAA--------------------------AAACCGA---AAC--GATGGGA----C---ATTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCCGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CTAA-----------TC-CAATGC---TTTTTGCTTGTTTCTTTTC---------TGCTTTCT--TTTCTTCC-------TTTTACTGATTTC--TTTT--GTTTATGTTGTTTTGCAC-TCTACTCGA----ACAA---------------------------------------------------------------------------------------------------------CCAACAACAA------------CCA--AC-------------AA-CAA------------------------CAACAACAACAACA---------------------------AACAA-CAACTA---------A---------------ATGCATCATCATCAACATCCTACAACATCCTACGGGCATC-----CGA---ACC--G---------------CACTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---TTATGCGATGTCACCATCGATGGGT------GGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGG.....................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGGCTCGGG---TTATGCGATGTC.....................2611.0010001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCTCGGG---TTATGCGATGTC.....................2311.0010000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................C-----CGA---ACC--G---------------CACTGAACC-ACAG...........................................................2111.0010000001000
........................................................................................................................................A---------------------------------------------------------------------------------------------------------CCAACAACAA------------CCA--AC-------------AA-C.........................................................................................................................................................................................................................................................1940.2510100000000
droPer2
CTAA-----------TC-CAATGC---TTTTTGCTTGTTTCTTTTA---------TGCTTTCT--TTTCTTCC-------TTTTACTGATTT----CTTTCGTTTATGTTGTTTTGCAC-TCTACTCGA----ACAA---------------------------------------------------------------------------------------------------------CCAACA---A------------CCA--AC-------------AACAAA------------------------CAACAACAACAACA---------------------------AAATG-----------------------------------CATCATCATCAACATCCTACAACATCCTACGGGCATC-----CGA---ACC--G---------------CACTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---TTATGCGATGTCACCATCGATGGGT------GGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................CATC-----CGA---ACC--G---------------CACTGAACC-ACA............................................................2312.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCG......................................1821.503300000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CCTACGGGCATC-----CGA---ACC--G---------------CACTGAAC.................................................................2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CATC-----CGA---ACC--G---------------CACTGAACC-...............................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGGG---TTATGC...........................2620.501001000
droWil2
CAAA-----------CC-AAACGCTTTT---TTTTTGTTTTT---CTTT-----TT-G--GTTTT--T--ATTTTGTTTTTC-------------TTTTATGTTTAATTTTT-CATAAC-GCG-----C----CCACG-----CT------------------------------------GC--------------T------GATT----AC------------T--------------GCAAAC--------------------CACAAA---------TCAATCCA------------------------C---------AACA---------------------------AATCG----------------------------------------AAA----------------------------T-CGATCGA---AAT--GGTGAAA---------ATCTCAA-T-GCAGGATCTTACATTCCAGGGCTCGGGTGGTTATCCCATGTCACCACTGG---GTGTGGCCGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCTTACATTCCAGGGCTCGGG....................................2612.00200110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--GGTGAAA---------ATCTCAA-T-GCAGGA.........................................................2311.00100001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGG.....................................1911.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGGCTCGGGTGGT................................1911.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCACCACTGG---GTGTGGCCG.2211.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTACATTCCAGGGCTCG......................................2111.00100010
...............................TTTTTGTTTTT---CTTT-----TT-G--GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.20100010
droVir3
CTAA-----------CC-CATTGCCGCTTTGT--TTTCTTCT--TC-TT------TTCTCTCT--TATTTT---------TC-------------TTT----TTGATTTTTC----------------GAAATTCGTTTTGT---TCATCATCGTTATCGTTATATT--------------GTCATTGCACACACATCACGCAC---CAATCGAACAATCGAACAATCGAACAATTGA-A------------------------------CAA---------TCGAACAA------------------------TTGAACAATCGAAC---------------------------AATTG-A-----------------------------------------------------------------------------------C--AATCGAT----CAATTTGAAAAAAC-CCAGGATCTTACATTCCAGGGCTCGGG---CTATCCAATGTCACCATTGG---GTGTCGCTGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATTCCAGGGCTCGGG---CT...............................2111.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAT----CAATTTGAAAAAAC-CCAG...........................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCTCGGG---CTATCCAA.........................1911.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGGCTCGGG---CTATCCAA.........................2311.001100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGGG---C................................2111.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCACCATTGG---GTGTC.....1911.001000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CTATCCAATGTCACCATTGG---GT........2311.001000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTACATTCCAGGGCTCGGG---.................................2311.001000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................AATCGAACAATTGA-A------------------------------CAA---------TC.............................................................................................................................................................................................................................................................2030.331001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AA---------TCGAACAA------------------------TTGAACAATC.....................................................................................................................................................................................................................2030.331001000000000000000000000000000000000000000000000000000000000000
droMoj3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACC-AAAGGATCTTACATTCCAGGGCTCGGG---CTATCCAATGTCACCGTTGG---GTGTGGCTGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGGCTCGGG---CTATC............................1912.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGG---CTATCCAATGTCACCGTTGG---..........2311.001100000
droGri2
TTT--------------------------TTTT-----TT----TA-TTTTCTTT--T--TATTT---------------TC-------------TTTCTAATCGTTTTC------------------A----TCATTATCA---TCATCATCGTTATCGTTAT--TGCCATCATCTAATAATCAATGC----------------------------------------------------ACCACAC---A------------CTA---------------------CG------------------------CACTGCCAACAACAAAAA-----------------------AACCG-----------------------------------AATCGTTATCGATAACCGAT---ATCCGATAAT---T-CGATGAATTGAAT--GA---A-----------AACG-AAC-ACAGGATCTTACATTCCAGGGCTCGGGAGGGTATCCGATGTCACCATTGA---GTGGCGC---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TTAATTCGATACTAACCTTCATTTCGCTT--TGCTTTCTT----TATTT--------T-TTCT--TTTCTTTT-------TTTCA-TTATCC---TTTTGGCCCGATTTTGT-TTGCAC-TCC-----A----CCACCAC---CACC---------------ACCA---------------------------------------------CGT------------CCAACAACACCA-CCACCA-CA-----------------------------------------A------------------------C---AACAACAACA---------------------------AACCAACCAACCAACCAA--CAACTACAACAAACAAAATTCA-CATCATC----------------------------CAACGGATATAAC--GATGGCCATCAT---CCACTGAA-A-ACAGGATCTTACATTCCAGGGCTCGGG---CTATACCATGTCGCCGCTGG---GCGTCGCCGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCATGTCGCCGCTGG---GC........2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAT---CCACTGAA-A-ACAG...........................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGG---CTATACCATGTCGCCGCTGG---GC........2611.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTCCAGGGCTCGGG---C................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTACATTCCAGGGCC........................................1911.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGG---CTATACCATGTCGCCGCTGG---GCG.......2711.001100000
.......................................................................................................................................................................................................................................................A-----------------------------------------A------------------------C---AACAACAACA---------------------------AACCAAC...............................................................................................................................................................................2030.331010000
.................................................................................................................................................................................................................................................................................................A------------------------C---AACAACAACA---------------------------AACCAAT...............................................................................................................................................................................19130.081010000
droBip1
CTAA-----------CCTTCATTTCGCTT--TGCTTTCTT----TATG------------TCT--TTTCTTTT--------T----TGATTTCAATTCTGCCCCGATTTTGT-TTGCACCTCC-----A----CCAACACCACCACC---------------ACCAC--------------GT------------------------CCA-CGA------------CC-ATCATGTC---CACCAACC---A------------CCACAACAA--------------CAA------------------------CAACAACAACAACA---------------------------AACAA-CAAACAAACAAA--CA---------------ATCCA-CATCAT---------------------------T-CGATGGATAAAAC--GATGGGAATCAT---CAACTGAA-A-ACAGGATCTTACATTCCAGGGCTCGGG---CTATACCATGTCGCCGCTGG---GCGTTGCCGGSizeHit CountTotal NormTotal
No Reads
droKik1
CTAA-----------CA-CCATGCCGCTT-TTGCTCCTTT-----ATTT--------CGTTCT--TTTCTTT----T---TC--------TTC--CATTACGTTGATTTCGT-TTGCAC-TCG-----A----TCAAT-----CA------------------------------------AT------------------------CAATCAA------------TCGAAC---------ACCAAT--------------------CACCAA---------TCAATCAA------------------------CCAAACCAACCAC---------------------------------------------------------------------------------------------------------------G---------AATGGGA----T---CTTCTGAACCAACAGGATCTTACATTCCAGGGCTCGGG---CTACACACTGTCGCCATTGG---GCG---CCGGSizeHit CountTotal NormTotal
No Reads
droFic1
CTAA-----------CC-CCATGCCGCTTTTTGCTCGTTT-----ATTT--------T-TTCTTT--T-------------C-------------TTTTGCGTTGATTTTGT-TTGCAC-T--ACTCAA----CCAACC-AACCA------------------------------------AT------------------------CAATCAA------------TCAATCAAACGAACCACCAACC---A------------CCACACGAA---------TCAATCAACA----ACACCACCAACCAACCAAC---TACAACAACA---------------------------AATCA-CCAATCAACCAA--CA---------------AC-CA-ACTCATCAT------------------------T-AAACCGA---AACGTGATGGGA----T---CTTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGTTTCCGGSizeHit CountTotal NormTotal
No Reads
droEle1
CTAA-----------CC-CCATGCTGCTTTTTGCTTGTTT-----ATTT--------T--TCT--TTTTTCTT---T---TC-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAAT-----CA------------------------------------AT------------------------CGTTCGT------------TCGATCAAATCA-ACACCACCA---A------------CCACACCAATCAAATCAATCAATCAACAACCAA-----------------CACCACCAACAACAAACC-----------------------AACTA-CCAATCAACCAC--CA---------------AC-CA-ACTCATCA---------------------------AAACCGA---AAC--GATGGGA----T---CTTCTCAATC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGT------SizeHit CountTotal NormTotal
No Reads
droRho1
CTAA-----------CC-CCAAGCCGCTTTTTGCTTGTTT----TA-TT--------T--TCT--TTTCTT-----T---TC-------------TTTTGCATTGATTTTGC-TTGCAC-TCA-----A----CCA---------------------------------------------AT------------------------CAATCGA------------TTGATCAAATCA-ACACCACCA---A------------CCACACCAA---------TCAACCAACA----A-----------------CACCACCAACAACA---------------------------AACCA-CCAATA---------A---------------AT-CA-ACTCATCAA--------------------------AAACCAA---AAC--GATGGGT----T---CTTCTGAATC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAACATGTCGCCGCTGG---GCGT------SizeHit CountTotal NormTotal
No Reads
droBia1
CAAT---------------------------------------------------------------------------------------------------------------------CA-----A----TCAAC-------------------------------------------------------------------------------------------------------AACACCA---A------------CTACAACAA--------------------------------------------CAACAACAACAACAACAACAACTACTACAACAACAACAAACCA-CCAATC---------A---------------AC-CA-ACTCATCAA------------------------CCAAACCGA---ATC--GATGGGA----C---GTTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGT------SizeHit CountTotal NormTotal
No Reads
droTak1
CTAA-----------CC-CATTGCCGCTTTTTGCTCGTTT-----ATTT--------T--TCT--TTTCTCTT---T---TA-------------TTTTGCATTGATTTTGT-TTGCAC-TCA-----A----CCAAT-----CA------------------------------------AT------------------------CAATCGA------------TCGATCAAATCA-ACACCACCA---ACCAACCAACCAACCACACCAA---------TCAATCAACA----A-----------------CAACACCAACAACA---------------------ACAACAAAACG-AAAACC---------A---------------AC-CA-ACTCATCAA--------------------------AAACCGA---ATC--GATGGGA----T---CTT--------ACAGGATCTTACATTCCAGGGCTCGGG---ATACAACATGTCGCCGCTGG---GCGT------SizeHit CountTotal NormTotal
No Reads
droEug1
TTATTTTTATGCTAACT-CCATTCCGCTTTTTGCTCGTTT-----ATTT--------T----------------------TC-------------TTTTGCGT----TTTTT-TTGCAT-TCA-----A----CCAA-------------------------------------------------------------------------TCGA------------TCGATTAAATCA-AAACCACCA---A------------TTACACCAA---------CCAACCAA------------------------CAACAC---CAACA---------------------------AACCA-CCAATC---------A---------------AC-AA-ACTCATCTA--------------------------AAATCGA---AAC--GATGGGA----T---CTTTTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTGG---GCGT------SizeHit CountTotal NormTotal
No Reads
dm3
CTAA-----------CC-CCATGCTGCTTTTTGCTCGTTT----TA-TT--------T--TCT--TT---------T---TC-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAACC-AACCA------------------------------------AT------------------------CAATCGA------------TCGATCAAATCA-ACACCAACA---A------------CCACACCAA---------TCAATCAACA----A-----------------CACCAACAACAACA---------------------------AACCA-CAAATC---------A---------------AC-CA-AATCATCAA--------------------------AAACCGA---AAC--GATGGGT----C---ATTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCCGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTACATTCCAGGGCTCG......................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTCCAGGGCTCGGG---ATAC.............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATTCCAGGGCTCGG.....................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGA---AAC--GATGGGT----C---ATTCTGAACC-ACAG...........................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTTGCGTTGATTTTGT-TTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTCCAGGGCTCGGG---ATACAATA.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTACATTCCAGGGCTCG......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATATGTCGCCGCTAG---GCGTCTCC..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGG---ATACAATATGTCGC...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................A-CAAATC---------A---------------AC-CA-AATCATCA...................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGGG---ATACAATATGTCGC...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGCTCGGG---ATACAATA.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTACATTCCAGGGCTCGGG---.................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TGT-TTGCAC-TCA-----A----CCAACC-AACCA------------------------------------AT------------------------CAA.......................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGGCTCGGG---ATAC.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................A----CCAACC-AACCA------------------------------------AT------------------------CAATCGA------------TCGAT..................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATATGTCGCCGCTAG---GCGTC.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGGCTCGGG---ATACAATATGTCGC...................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATTCCAGGGCTCGGG---A................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCTCGGG---ATACAATATG.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CAATCGA------------TCGATCAAATCA-ACACC.....................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGGCTCGGG---ATACA............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATTCCAGGGCTCGGG---ATACAATA.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................A------------------------------------AT------------------------CAATCGA------------TCGATCAAA..............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTCCAGGGCTCGGG---ATACAATATGA......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGGG---.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCAGGGCTCGGG---ATAC.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................C-------------TTTTGCGTTGATTTTGT-TTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTACATTCCAGGGCTCGGG---T................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTCCAGGGCTCGGG---ATACAAT..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCTTACATTCCAGGGCTCGG.....................................2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGG.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---AAC--GATGGGT----C---ATTCTGAACC-A..............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---AAC--GATGGGT----C---ATTCTGA...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCTCGGG---ATACAATATGTCGC...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
CTAA-----------CC-CCATGCTGCTTTTTGCTCGTTT----TA-TT--------T--TCTTT--T-------------C-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAAC-----CA------------------------------------AT------------------------CAATCGA------------TCGATCAAATCA-ACACCAACA---A------------CCACACCAA---------TCAATCAA------------------------CAACACCAACAACA---------------------------AACCA-CAAATC---------A---------------AC-CA-AATCATCAA--------------------------AAACCGA---AAC--GATGGGT----C---ATTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCCGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---AAC--GATGGGT----C---ATTCTGAACC-A..............................................................2412.00200200000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGG---ATACAATATGTCGCCGC................2011.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTCGCCGCTAG---GCGTCTCCGG2511.00100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGTCGCCGCTAG---GC........1811.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATATGTCGCCGCTAG---GC........2011.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGCTCGGG---ATACAATATGT......................2311.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGGCTCGGG---A................................1611.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGA---AAC--GATGGGT----C---ATT.......................................................................2111.00100000000001000000
.....................................................................................................GTTGATTTTGT-TTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000010000000000
droSec2
CTAA-----------CC-CCATGCTGCTT-TTGCTCGTTT----TA-TT--------T--TCTTT--T-------------C-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAAC-----CA------------------------------------AT------------------------CAATCGA------------CCGATCAAATCA-ACACCAACA---A------------CCACACCAA---------TCAATCAA------------------------CAACACCAACAACA---------------------------AACCA-CAAATC---------A---------------AC-CA-AATCATCAA--------------------------AAACCGA---AAC--GATGGGT----C---ATTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCCGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCTTACATTCCAGGGCTCGGG---.................................2511.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGGG---A................................2111.0010100
droYak3
CTAA-----------CC-CCATGCTGCTTTTTGCTCGTTT-----ATTT--------T--TCTTT--T-------------C-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAAC-----CA------------------------------------AT------------------------CAATCGA------------TCGATCAAATCA-ACACCAACAACAA----CC-----ACAACACCAA---------TCAATCAA------------------------CAACACCAACAACA---------------------------AACCA-CAAATCAACCAAATCA---------------AC-CA-AATCATCAA--------------------------AAACCGA---AAC--GATGGGA----C---ATTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTTG---GCGTCTCCGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAACC-ACAGGATCTTACATTCC..............................................2611.00110000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--GATGGGA----C---ATTCTGAAC.................................................................2011.00100010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTCGGG---ATACAATATGTCGCCGC................2611.00101000000000
.............................................ATTT--------T--TCTTT--T-------------C-------------TTTTGCGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AAC--GATGGGA----C---ATTCTGAACC-AC.............................................................2411.00110000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---AAC--GATGGGA----C---ATTCTGAACC-AC.............................................................2511.00110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTACATTCCAGGGCTCGGG---A................................2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGGCTCGGG---ATACAATATGTCGC...................2811.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGG---ATACAATATGTCGC...................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGGCTCGGG---ATACAATATGTCGC...................2711.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--GATGGGA----C---ATTCTGAACC-A..............................................................2211.00110000000000
droEre2
CTAA-----------CC-CCATGCTGCTTTTTGCTCGTTT-----ATTT--------T--TCTTT--T-------------C-------------TTTTGCGTTGATTTTGT-TTGCAC-TCA-----A----CCAACC-AATAA------------------------------------AT------------------------CAATCGA------------TCGATCAAATCA-ACACCAACA---A------------CCACACCAA---------TCAATCAA------------------------CAACACCAACAACA---------------------------AACCA-CAAATC---------A---------------AC-CA-AATCATCAA--------------------------AAACCGA---AAC--GATGGGA----C---ATTCTGAACC-ACAGGATCTTACATTCCAGGGCTCGGG---ATACAATATGTCGCCGCTAG---GCGTCTCCGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTCCAGGGCTCGGG---.................................1811.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATTCCAGGGCTCGGG---.................................2011.0010000100

Generated: 05/18/2015 at 05:21 AM