ID:

dps_2718

 Coordinate:

XL_group1e:6553275-6553419 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.5 -17.3 -17.3

Flybase annnotation

CDS [Dpse\GA22586-cds]; exon [dpse_GLEANR_1068:5]; exon [dpse_GLEANR_1068:6]; CDS [Dpse\GA22586-cds]; intron [Dpse\GA22586-in]

Repeatable elements

NameClassFamilyStrand
(TC)nSimple_repeatSimple_repeat+
mature
  1. dps_2718  XL_group1e:6553387-6553408 +
  2. XL_group1e:9188135-9188156 +
  3. 2:3943310-3943331 +
  4. 2:21768647-21768668 +
  5. XR_group8:2828817-2828838 +
  6. XR_group8:4039663-4039684 +
  7. XR_group8:5687419-5687440 +
  8. XR_group8:5690769-5690790 +
  9. XR_group8:7954443-7954464 +
  10. 4_group1:1343185-1343206 +
  11. 4_group1:4001550-4001571 +
  12. 4_group3:1554968-1554989 +
  13. 4_group3:3877168-3877189 +
  14. 4_group3:6143385-6143406 +
  15. XR_group6:2224242-2224263 +
  16. XR_group6:8686045-8686066 +
  17. XR_group6:11035546-11035567 +
  18. XL_group1a:4185228-4185249 +
  19. XL_group1a:4976145-4976166 +
  20. XL_group1a:7632373-7632394 +
star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTGCAAAGCCATCATTTAACTTTGGAGGCTCTTCGGCTCTTTCCCAGTCGGTAAGTATATCGGAATCGGCAGTTGATAGTGCTGCACTCCGTTCGATAACTGATCAATCCTCTCTAAATCGATGCTCTCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTCTCCGCAGGCGGCCACATCTGGACCCTTCAACTTTGGCGGCAGCGGCACCGCGGGCAG
**************************************************...(((.(((((((....(((((.......)))))......))))))))))...................((.((.....))))...........................................(((((........)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902010
ovaries
 SRR902011
testis
 V112
male body
...............................................................................................................................................................................................................................GCGCCAGCGGCACCGCCGG... 19 2 17 86.18 1465 1464 0 0 0 1
.............................................................................................................................................................................................................................TCGCGCCAGCGGCACCGCCGG... 21 3 6 7.83 47 47 0 0 0 0
..............................................................................................................................................................................................................................CGCGCCAGCGGCACCGCCGG... 20 3 20 5.55 111 111 0 0 0 0
........................................................................................................................................................................................................CACATCTGGACCCTTCAACTTTGGC.................... 25 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................................ATCTGGACCCTTCAACTTTGGC.................... 22 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................GGCCACATCTGGACCCTTC............................. 19 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................TTTGGCGCCAGCGGCACCGCCGG... 23 2 1 1.00 1 1 0 0 0 0
.........CATCATTTAACTTTGGAGGC........................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................GGCCACATCTGGACCCTTCAACTTT....................... 25 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................TGTCGCGCCAGCGGCACCGC...... 20 3 16 0.69 11 11 0 0 0 0
...............TTAACTATGGAGGCTCTCC................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................................................GGCGCCAGCGGCACCGCCGG... 20 2 6 0.50 3 3 0 0 0 0
...............................................................................................................................................................................................................................GCGTCAGCGGCACCGCCGG... 19 2 5 0.20 1 1 0 0 0 0
..................................................................................................................................................................TCTCTCTCTCTCTCTCTGTGTG............................................................. 22 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................TCTCTCTCTCTCTCTCTCTCTCTCT.................................................................. 25 0 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................CTCTCTCTCTCTCTCTCTCTCTCTCTGT................................................................ 28 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................TCTCTCTCTCTCTCTCTCTCTCTCT.................................................................... 25 0 20 0.05 1 0 0 1 0 0
..............................................................................................................................................TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT.................................................................... 35 0 20 0.05 1 0 0 0 1 0
................................................................................................................................................TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT.................................................................. 35 0 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

GACGTTTCGGTAGTAAATTGAAACCTCCGAGAAGCCGAGAAAGGGTCAGCCATTCATATAGCCTTAGCCGTCAACTATCACGACGTGAGGCAAGCTATTGACTAGTTAGGAGAGATTTAGCTACGAGAGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACACACACAGAGGCGTCCGCCGGTGTAGACCTGGGAAGTTGAAACCGCCGTCGCCGTGGCGCCCGTC
**************************************************...(((.(((((((....(((((.......)))))......))))))))))...................((.((.....))))...........................................(((((........)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 V112
male body
.....................................AGAAAGGGTCAGCCATTCAT............................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0
.............................................................................................................................................................................GAGAAACACACACAGAGACGT................................................... 21 2 5 0.20 1 0 1 0
............................................................................ATCACGACGTGATGCAACCG..................................................................................................................................................... 20 3 6 0.17 1 0 1 0
............................................................................................................................................................................................................................AACCGCCGTTGACGTGGC....... 18 2 8 0.13 1 1 0 0
.........................................................................................................................................................................GAGAGAGAGACACACACAGA........................................................ 20 0 11 0.09 1 0 0 1
.........................................................................................................................................GAGAGAGAGAGAGAGAGAGAG....................................................................................... 21 0 20 0.05 1 1 0 0
................................................................................................................................................AGAGAGAGAGAGAGAGAGAGAGAGAGA.......................................................................... 27 0 20 0.05 1 0 0 1
.......................................................................................................................................GAGAGAGAGAGAGAGAGAGAG......................................................................................... 21 0 20 0.05 1 1 0 0
.................................................................................................................................................GAGAGAGAGAGAGAGAGAGAGAGA............................................................................ 24 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:6553225-6553469 + dps_2718 CTGCAAAGC---CATCATTTA---------ACTTTGGAG-------------------------------G---------------------------------------------------------CTCTT------------CGGCTCT------T---TCCCAGTCGGT--AAGTATAT-CGGAATCGGCAGTTGATAGTGCTGCACTCCGTTCGA-TAACTGATCAAT-----------------------------------------------CCT--------------------------------------------------CTCTAA--------ATC--GATGCTCT----------------CCGCTCT--------CTCTCT---------------------------------------CTCTCTCTCTCTCTCTCTC------TCTCTCT----CTCTC----------------------TCT------CTCTGTGTGTGTCTCCGCAGGCGGCCACATCTG------------------------------------------------GACCCTTCAACTTTGG------------------CGGCAGCGGCACCGCGGGCAG
droPer2 scaffold_21:1563672-1563878 + CTGCAAAGC---CATCATTTA---------ACTTTGGAG-------------------------------G---------------------------------------------------------CTCTT------------CGGCTCT------T---TCCCAGTCGGT--AAGTATAT-CGGAATCGGCACTTGACAGTGCTGCGCTCCGTTCGA-TAACTGATCGAT-----------------------------------------------CCT--------------------------------------------------CTCTAA--------AT---------------------------------------------------------------------------------------CGATGCTCTCCGC------------TCTCTTT----CTATC----------------------TCTGT----------------CTGCGCAGGCGGCCACATCTG------------------------------------------------GACCCTTCAACTTTGG------------------CGGCAGCGGCACCGCGGGCAG
droWil2 scf2_1100000004909:6314781-6314972 + GCAAGAT-----TCTTATTCA---------GCTTGCTTT-------------------------------G---------------------------------------------------------CTTTA------------CGGCCTT------C---TCTCTGTTATT--TCATATAT-TTATTTAAGCATTTTTCTG-----------------------------------------------------------------------------------TTGATGTTGCTTTCTTCTCCACTTTCACTTTTGTTTTCCTCT--------------------------------C----TCTCCTT-TCC---------------------TCTCTCTCT----------CT------------------CTCTCTCTCTCTC------------TCTCTCT----CTCTC----------------------TCTCTCTGTTTCTAT----------------GTTTGTCT-------------------------------------------------------------------------------------------------------CTG
droVir3 scaffold_12193:349-532 + TGATTTT----------------------------GCGG-------------------------------G---------------------------------------------------------CTGTC------------GGGCATTAAGAGCA---TCCACATCAAT--CCGTGTAT-CGACAACGGCG-ACAACAATGGCAAACACGCTAGAG-AAACCAACCTTT-----------------------------------------------GCT--------------------------------------------------CGCTAG--------TCA--GC---CC-----------------CCCCCCC--------CTCTCT-----------------------CTCT------------CT----CTCTCTC------------TCTCTCT----CTCTCTCTCTC----------------TCGCTCT--GCCAGG----C------------------------------------A------TTGCC----------------------------------------------------------TTAG------------CAG
droMoj3 scaffold_6482:868583-868826 - TCTTTCT------------------------------AC-------------------------------T---------------------------------------------------------TTGCT------------TCGTTTT------T---TCTCAGTCGCTCTGACCACATGCAGCATCCGCAGTATCCAACGCCGAACTCCACTAAG-AAGCTGCCCATTAATTGTTGAGTTTAGGGCATTTTTT-TC---------------------------------------------------------------------------TTGTTTAAAGT---------AA------------------CTTCTCT--------CTCTAT---------------------------------------CTCTCTCTCTGTC------------TCTTTCT----CTCTCTCTC------------------TGTCT----ATCT--------TCATGCCGCTGTCAATGTGTG--------------------------------AAA-------------TGAGCTTCAAGTACAA------------------CAGCAGCAAAACAACTGACA-
droGri2 scaffold_14853:4874164-4874355 + CTGCAGAGGGGGTAGCGGGTA---------GCTGTGGAGGGGGCTCGAGGGTTGTTTTTAGCGGCCACTC-TTTT-GGAATCAGAAGCAGGACAC---TTAC-GGCCT-GCA---------CCT-----------------------------------------------------------------------------------------CGC--------------------------------------------------------------------TC------------------------------------------T---------------------------CTCTC----ACCTCTCTCTC---------------------TTTCTCTCT----------CTTTCTCT----CT------------CTCTCTCTCTCTCTCGCT----------------------------CTCCCTCTCGCTCT----------CTCT------------------------------------CGCT------CTGTGTGT----------------------------------------------------------G------------CGT
droAna3 scaffold_13117:2798347-2798476 + CGGCTCT---------------TCG-------------------------------------------------C-GGATATATAAGCCGCACAT---ATAG-GGATTGGCA-----------------------------------------------------------------------------------TTACATATTCGCC--------------------------------------------------------------------------------------------------------------------------------------------------------T----ACTCCTT-TCC---------------------TCGCTCTGT----------CTCTGTCT----CT------------CTCTCTCTCTCTCTCTCTCTCTCGCT----CGCTCTCTC------------------TGTC----------------------------------------------------T------CT------------------------------------------------------------------------------GT
droBip1 scf7180000393726:13752-13852 - GTGCTGC----------------------------------------------------------------AGTAA---------------------------------C-------TGAACATCTATCTCTATCTTTGT--------T---------------------------------------------------------------------------------------------------------------------------------------TA------------------------------------------T---------------------------CTCT----------------CCACTCT--------CTCTTT---------------------------------------CTCTCTCTCTGTCTCTGTC------TCTGACT----CTGTC----------------------TCT------TTCTTT------------------------------------------------------------------------------------------------------------------G------------TAT
droKik1 scf7180000302724:273294-273442 - CAACGAAGC---CTGCATTTA---------ACTTTGGAG-------------------------------G---------------------------------------------------------AGCAG---------------------------------------T--AGCTGCCA-CGGCAAC------TGTAAGTATTGAA------------------------------------------------------------TATACAAT--TCT--------------------------------------------------A----A--------TT-----------------------------------------------------AGAC------------------------------CGA--GTCCAAGC------------TATAATT----CCAT-------------------------TGT----------------GT---CAGCAGTCCTCCGGTG------------------------------------------------CTCCATTCAACTTTGG------------------CTCCAG------------CAC
droFic1 scf7180000453416:3331-3478 - TCCGTTC----------------------------------------------------------------TGTC--CAAGTGCAGTCGGTTTATTGGATACCGGAAAGGCATTATGTTGCCCT----------------------------------------------------------------------------------------CC---------------------------------------------------------------------CTC------------------------------------------TCCCT---------------------------CTCCCTC-----TCCC---------------------TCTCCCTCT----------CCCTCTCC------------CT----CTCCCTC------------T--CCCT----CTCCC------------TCTCCCTC--TCC----------CTCT----------CCCTC------------------------T------CCATCTGC----------------------------------------------------------C------------TCT
droEle1 scf7180000491278:305147-305275 - ATAATCC----------------------------------------------------------------TCTGC---------------------------------G-------TGGGTCGA--T-----------------------------------------------------------------------------------------------------------------------------------------------------------GAG------------------------------------------TGCCGCCCTGC--------TTA--GC-------------------------------------------CGCCTCCTG----------CTCTATCT----CT------CTCTCTCTCTCTCTCACTC------CCTTTCT----CTGTCTCTC------------------TCTCTCTGGT-----------TCCCAAAAACAGCTAATTCCG----------------------------------------------------------------------------------------------------AAC
droRho1 scf7180000777610:33827-33932 + CCGCTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCCTCCTCTCTCT---CTCTGT----------CCTCCTCT----CTCTCTCTCT------------CTGTCTGTCT----------------------------GTCTATC-----------------------------GCGATCGGGCA---TTA------------------------------------------------GAAGCGTCGACGTCGA------------------CGTCGGCAGC-----------
droBia1 scf7180000302473:55013-55111 - TTCGCTA----------------------------------------------------------------TTTCT---------------------------------G-------CAACTCTC--T-----------------------------------------------------------------------------------------------------------------------------------------------------------CTT------------------------------------------TCCCTCTTTCT--------------------T----------------TCCC-----------------TCTTTCTTT----------CTCT--------CT------------CTCTCTCTCTCTCTCTCTCTCTCTCT----CTCTCT----------------------------------CTCT------------------------------------CTCT------CT-------------------------------------------------------------------------------C
droTak1 scf7180000415722:239146-239296 - ATAACTT----------------------------------------------------------------TTTAA---------------------------------T-------CAACATTC--T-----------------------------------------------------------------------------------------------------------------------------------------------------------AAA------------------------------------------CCACGAAATGATTTCAAAT---------TTCT----------------CCTCTCT--------CTCCCT---------------------------------------CTCTCTCTCCCAC------------TCTCTCT----CTCTCTCTGTTTCTCTGTACGATT-------------------------------------------TG---------AACTTTTTAATTAAATATAT--------------------------AAAGTTTGG------------------CAACAACTGCCT------CGC
droEug1 scf7180000405574:41282-41387 - TCTCTCAC-------------------------------------------------------------------------------------------------------------------------TCTA-------------------------------------------------------------------------------------------------------------------------------------------------------TC------------------------------------------T---------------------------CTCT-----------------CCCCTC--------CTCTCT-----CTCT----------AT------------------CTCTCTCTCTCTC------------TCTCACT----CTCTC----------------------TCT------GCCTGTCTGTCATCCTCTCGCCGTCTCTATCTC------------------------------------------------GCCCA-----------------------------------------------TTC
dm3 chr3RHet:2136650-2136795 + TTCTCTC----------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------TCTCTCTCTCTCTCTCTCTCT------------CT----CTCTCTC------------T--CTCTCTCTCTCTC----------------------TCTCT----C--TCTCT----------CTTGTACC------------------CTTT------CTC------------------------GCACCTACAACTTTGGAGCCTTCTGAAAAGCTAGCGGCGATCTCAGGACAGGCTA
droSim2 3r:7493206-7493317 - TCAATCA---------------TCAATAAAATCTAAT------------------------------------------------------TGAATTTATGCCGAG------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------CTTCTGTC------------------------------------------T---------------------------CCC---------------------T----------CTCTCT---CTCTCT------------------------------CT----CTCTC--------------TCTCTCT----CTATCTCTCTC----------------TCTCTCTCATCCT------------ATAGACCG-------------------------------------------------------------------------------------------------------------CCA
droSec2 scaffold_28:682496-682672 + AACTTCC-----------AGCGCCCATCGCACTTTAC--------------------------------------------------------------------------------------------------------------------------------GAGGTGTT--GACTGTGT-CGGCATC------TGGCAG-----------------------------------------------------------------------------------CTTCTGTCGCTCTCT-----------------------------------------------------------CTCCCTC------------------------------------TCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCT------------CTCTCTCTCT----------------------------CTCCCTCTCTCTCC----------CTCC------------------------------------CTCT------CTCTCTCTTTATCATCGCCCCAATTTGGCT-------------------------------------------------CTT
droYak3 X:2342580-2342772 - CTTTTCAAC---TATCAATAA---------ACTTTGTGA-------------------------------A---------------------------------------------------------TTCTAGCTTTCTGCTTTTGATGT-------TCCAT---CCCCGAT--AAGTTTAT-TTTCATGGACGGATAACAATGACGAACTGTACAGTTTTGCCATATGAAT-----------------------------------------------TGT--------------------------------------------------GACAAA--------ATGCGAATGGCTT----------------CCTCTCT--------CTCTTT---------------------------------------CTCTCTCTCTCTC------------TCTCTCT----CTCTCTCTCTC----------------TCT------CTCT------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:571498-571656 + TGCTGCG---------------TTG----------------------------------------------------------------------------------------------------------CT-------CCGTTTGGCAT--------------------------------------------------------------------------TGTTTGGT-------CCCATTAGCGCGGGTGTTATCAGTTCTCCAGCTACTGTTTTCTCT---------------------------------------------------------------------------------------------------------------------CTCC----------CT------------------CTCTCTCTCTCTC------------TCTCTCT----CTCTC----------------------CCTCTCTGAT----------------TCTCCTGCTGCCTCCATATCTTTCTCCCTTT------CTC------------------------------------------------------------TGGGT-----------GGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CTGCAAAGC---CATCATTTA---------ACTTTGGAG-------------------------------G---------------------------------------------------------CTCTT------------CGGCTCT------T---TCCCAGTCGGT--AAGTATAT-CGGAATCGGCAGTTGATAGTGCTGCACTCCGTTCGA-TAACTGATCAAT-----------------------------------------------CCT--------------------------------------------------CTCTAA--------ATC--GATGCTCT----------------CCGCTCT--------CTCTCT---------------------------------------CTCTCTCTCTCTCTCTCTC------TCTCTCT----CTCTC----------------------TCT------CTCTGTGTGTGTCTCCGCAGGCGGCCACATCTG------------------------------------------------GACCCTTCAACTTTGG------------------CGGCAGCGGCACCGCGGGCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATCTG------------------------------------------------GACCCTTCAACTTTGG------------------C....................2511.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTG------------------------------------------------GACCCTTCAACTTTGG------------------C....................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACATCTG------------------------------------------------GACCCTTC...............................................1911.0010100000000
............CATCATTTA---------ACTTTGGAG-------------------------------G---------------------------------------------------------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACATCTG------------------------------------------------GACCCTTCAACTTT.........................................2511.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCT----CTCTC----------------------TCT------CTCTGTGTG...............................................................................................................................22200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTC------TCTCTCT----CTCTC----------------------TCT------CTCT....................................................................................................................................25200.0510000000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTC------TCTCTCT----CTCTC----------------------TCT------CTCTGT..................................................................................................................................28200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTC------TCTCTCT----CTCTC----------------------TCT------CT......................................................................................................................................25200.0510000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCTCTCTC------TCTCTCT----CTCTC----------------------TCT------CT......................................................................................................................................35200.0510000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCTCTC------TCTCTCT----CTCTC----------------------TCT------CTCT....................................................................................................................................35200.0510000000010
droPer2
CTGCAAAGC---CATCATTTA---------ACTTTGGAG-------------------------------G---------------------------------------------------------CTCTT------------CGGCTCT------T---TCCCAGTCGGT--AAGTATAT-CGGAATCGGCACTTGACAGTGCTGCGCTCCGTTCGA-TAACTGATCGAT-----------------------------------------------CCT--------------------------------------------------CTCTAA--------AT---------------------------------------------------------------------------------------CGATGCTCTCCGC------------TCTCTTT----CTATC----------------------TCTGT----------------CTGCGCAGGCGGCCACATCTG------------------------------------------------GACCCTTCAACTTTGG------------------CGGCAGCGGCACCGCGGGCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................G-------------------------------G---------------------------------------------------------CTCTT------------CGGCTCT------T---TCCCAGTCGGC--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.005500000
................ATTTA---------ACTTTGGAG-------------------------------G---------------------------------------------------------CTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.005500000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTG------------------------------------------------GACCCTTCAACTTTGG------------------C....................2212.002200000
..................................................................................................................................CTT------------CGGCTCT------T---TCCCAGTCGGC--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
.................................................................................................................................................................................................CACTTGACAGTGCTGCGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.................................................................................................................................................................................................CACTTGACAGTGCTGCGCTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................G-------------------------------G---------------------------------------------------------CTCTT------------CGGCTCT------T---TCCCAGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG------------------------------------------------GACCCTTCAACTTTGG------------------C....................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACATCTG------------------------------------------------GACCCTTCAA.............................................2111.001010000
......................................................................G---------------------------------------------------------CTCTT------------CGGCTCT------T---TCCCAGTCGGC--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
droWil2
GCAAGAT-----TCTTATTCA---------GCTTGCTTT-------------------------------G---------------------------------------------------------CTTTA------------CGGCCTT------C---TCTCTGTTATT--TCATATAT-TTATTTAAGCATTTTTCTG-----------------------------------------------------------------------------------TTGATGTTGCTTTCTTCTCCACTTTCACTTTTGTTTTCCTCT--------------------------------C----TCTCCTT-TCC---------------------TCTCTCTCT----------CT------------------CTCTCTCTCTCTC------------TCTCTCT----CTCTC----------------------TCTCTCTGTTTCTAT----------------GTTTGTCT-------------------------------------------------------------------------------------------------------CTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTC------------TCTCTCT----CTCT........................................................................................................................................................................19200.05110000
droVir3
TGATTTT----------------------------GCGG-------------------------------G---------------------------------------------------------CTGTC------------GGGCATTAAGAGCA---TCCACATCAAT--CCGTGTAT-CGACAACGGCG-ACAACAATGGCAAACACGCTAGAG-AAACCAACCTTT-----------------------------------------------GCT--------------------------------------------------CGCTAG--------TCA--GC---CC-----------------CCCCCCC--------CTCTCT-----------------------CTCT------------CT----CTCTCTC------------TCTCTCT----CTCTCTCTCTC----------------TCGCTCT--GCCAGG----C------------------------------------A------TTGCC----------------------------------------------------------TTAG------------CAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------TCTCTCT----CTCTCTCTCTC----------------TCG..............................................................................................................................................22200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
TCTTTCT------------------------------AC-------------------------------T---------------------------------------------------------TTGCT------------TCGTTTT------T---TCTCAGTCGCTCTGACCACATGCAGCATCCGCAGTATCCAACGCCGAACTCCACTAAG-AAGCTGCCCATTAATTGTTGAGTTTAGGGCATTTTTT-TC---------------------------------------------------------------------------TTGTTTAAAGT---------AA------------------CTTCTCT--------CTCTAT---------------------------------------CTCTCTCTCTGTC------------TCTTTCT----CTCTCTCTC------------------TGTCT----ATCT--------TCATGCCGCTGTCAATGTGTG--------------------------------AAA-------------TGAGCTTCAAGTACAA------------------CAGCAGCAAAACAACTGACA-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CTGCAGAGGGGGTAGCGGGTA---------GCTGTGGAGGGGGCTCGAGGGTTGTTTTTAGCGGCCACTC-TTTT-GGAATCAGAAGCAGGACAC---TTAC-GGCCT-GCA---------CCT-----------------------------------------------------------------------------------------CGC--------------------------------------------------------------------TC------------------------------------------T---------------------------CTCTC----ACCTCTCTCTC---------------------TTTCTCTCT----------CTTTCTCT----CT------------CTCTCTCTCTCTCTCGCT----------------------------CTCCCTCTCGCTCT----------CTCT------------------------------------CGCT------CTGTGTGT----------------------------------------------------------G------------CGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CGGCTCT---------------TCG-------------------------------------------------C-GGATATATAAGCCGCACAT---ATAG-GGATTGGCA-----------------------------------------------------------------------------------TTACATATTCGCC--------------------------------------------------------------------------------------------------------------------------------------------------------T----ACTCCTT-TCC---------------------TCGCTCTGT----------CTCTGTCT----CT------------CTCTCTCTCTCTCTCTCTCTCTCGCT----CGCTCTCTC------------------TGTC----------------------------------------------------T------CT------------------------------------------------------------------------------GTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................T----CT------------CTCTCTCTCTCTCTCTC.........................................................................................................................................................................................20200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCT----CT------------CTCTCTCTCTCTCTC...........................................................................................................................................................................................20200.051100000
droBip1
GTGCTGC----------------------------------------------------------------AGTAA---------------------------------C-------TGAACATCTATCTCTATCTTTGT--------T---------------------------------------------------------------------------------------------------------------------------------------TA------------------------------------------T---------------------------CTCT----------------CCACTCT--------CTCTTT---------------------------------------CTCTCTCTCTGTCTCTGTC------TCTGACT----CTGTC----------------------TCT------TTCTTT------------------------------------------------------------------------------------------------------------------G------------TATSizeHit CountTotal NormTotal
No Reads
droKik1
CAACGAAGC---CTGCATTTA---------ACTTTGGAG-------------------------------G---------------------------------------------------------AGCAG---------------------------------------T--AGCTGCCA-CGGCAAC------TGTAAGTATTGAA------------------------------------------------------------TATACAAT--TCT--------------------------------------------------A----A--------TT-----------------------------------------------------AGAC------------------------------CGA--GTCCAAGC------------TATAATT----CCAT-------------------------TGT----------------GT---CAGCAGTCCTCCGGTG------------------------------------------------CTCCATTCAACTTTGG------------------CTCCAG------------CACSizeHit CountTotal NormTotal
No Reads
droFic1
TCCGTTC----------------------------------------------------------------TGTC--CAAGTGCAGTCGGTTTATTGGATACCGGAAAGGCATTATGTTGCCCT----------------------------------------------------------------------------------------CC---------------------------------------------------------------------CTC------------------------------------------TCCCT---------------------------CTCCCTC-----TCCC---------------------TCTCCCTCT----------CCCTCTCC------------CT----CTCCCTC------------T--CCCT----CTCCC------------TCTCCCTC--TCC----------CTCT----------CCCTC------------------------T------CCATCTGC----------------------------------------------------------C------------TCTSizeHit CountTotal NormTotal
No Reads
droEle1
ATAATCC----------------------------------------------------------------TCTGC---------------------------------G-------TGGGTCGA--T-----------------------------------------------------------------------------------------------------------------------------------------------------------GAG------------------------------------------TGCCGCCCTGC--------TTA--GC-------------------------------------------CGCCTCCTG----------CTCTATCT----CT------CTCTCTCTCTCTCTCACTC------CCTTTCT----CTGTCTCTC------------------TCTCTCTGGT-----------TCCCAAAAACAGCTAATTCCG----------------------------------------------------------------------------------------------------AACSizeHit CountTotal NormTotal
No Reads
droRho1
CCGCTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCCTCCTCTCTCT---CTCTGT----------CCTCCTCT----CTCTCTCTCT------------CTGTCTGTCT----------------------------GTCTATC-----------------------------GCGATCGGGCA---TTA------------------------------------------------GAAGCGTCGACGTCGA------------------CGTCGGCAGC-----------SizeHit CountTotal NormTotal
No Reads
droBia1
TTCGCTA----------------------------------------------------------------TTTCT---------------------------------G-------CAACTCTC--T-----------------------------------------------------------------------------------------------------------------------------------------------------------CTT------------------------------------------TCCCTCTTTCT--------------------T----------------TCCC-----------------TCTTTCTTT----------CTCT--------CT------------CTCTCTCTCTCTCTCTCTCTCTCTCT----CTCTCT----------------------------------CTCT------------------------------------CTCT------CT-------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droTak1
ATAACTT----------------------------------------------------------------TTTAA---------------------------------T-------CAACATTC--T-----------------------------------------------------------------------------------------------------------------------------------------------------------AAA------------------------------------------CCACGAAATGATTTCAAAT---------TTCT----------------CCTCTCT--------CTCCCT---------------------------------------CTCTCTCTCCCAC------------TCTCTCT----CTCTCTCTGTTTCTCTGTACGATT-------------------------------------------TG---------AACTTTTTAATTAAATATAT--------------------------AAAGTTTGG------------------CAACAACTGCCT------CGCSizeHit CountTotal NormTotal
No Reads
droEug1
TCTCTCAC-------------------------------------------------------------------------------------------------------------------------TCTA-------------------------------------------------------------------------------------------------------------------------------------------------------TC------------------------------------------T---------------------------CTCT-----------------CCCCTC--------CTCTCT-----CTCT----------AT------------------CTCTCTCTCTCTC------------TCTCACT----CTCTC----------------------TCT------GCCTGTCTGTCATCCTCTCGCCGTCTCTATCTC------------------------------------------------GCCCA-----------------------------------------------TTCSizeHit CountTotal NormTotal
No Reads
dm3
TTCTCTC----------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------TCTCTCTCTCTCTCTCTCTCT------------CT----CTCTCTC------------T--CTCTCTCTCTCTC----------------------TCTCT----C--TCTCT----------CTTGTACC------------------CTTT------CTC------------------------GCACCTACAACTTTGGAGCCTTCTGAAAAGCTAGCGGCGATCTCAGGACAGGCTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTC------------T--CTCTCTCTCTCTC----------------------TCT..............................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTC----------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------TCTC.............................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTC----------------------TCTCT----C--TCTCT----------CTT...................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................T----CTCTCTC------------T--CTCTCTCTCTCTC----------------------T................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------------T--CTCTCTCTCTCTC----------------------TCTCT----C--T....................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTC------------T--CTCTCTCTCTCTC----------------------T................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------------T--CTCTCTCTCTCTC----------------------TCTCT----C--TCTC.................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCT------------CT----CTCTCTC------------T--....................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CTCTC------------------------------------TCTCTCTCTCTCTCTCT................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TCT---------------------------CTCTCTC------------------------------------TCTCTCTCTC.......................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...TCTC----------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------TCT..............................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TCTC----------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------TCTCT............................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTC----------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------TCTCTCTCT........................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTC----------------------TCTCT----C--TCTCT----------CTTG..................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTCTCTCTCT------------CT----CT........................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CTC------------------------------------TCTCTCTCTCTCTCTCTCT..............................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTC------------T--CTCTCTCTCTCT........................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTC----------------------TCTCT----C--T....................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CTCTC------------------------------------TCTCTCTCTCTCTCT..................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCT------------CT----CTCTCTC------------T--CT..................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CT------------CT----CTCTCTC------------T--CTCTCTCT............................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCT------------CT----CTCTCTC------------T--CT..................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTC----------------------TCTCT----C--TCTCT----------CTTG..................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CTCT---------------------------CTCTCTC------------------------------------TCTCTCT..........................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------TCTCTCTCTCTCTC...................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CTCTC----------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------TC...............................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....TC----------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------TCTCTC...........................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CTCTCTCTCTCTC----------------------TCTCT----C--TCTCT----------C.....................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TC----------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------TCTC.............................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CTC------------------------------------TCTCTCTCTCTCTCTCT................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCT------------CT----CTCTCTC------------T--CTCT................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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..............................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCT------------CT----CTCTCTC------------T--....................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTCTCTCTCT------------CT----..........................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CT------------CT----CTCTCTC------------T--CTCTCTCTCT..........................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCT------------CT----CTCT......................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCT------------CT----CTCTCTC------------T--CTCT................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTCTCTCT------------CT----CTCT......................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................................................................CTCTCTC------------------------------------TCTCTCTCTCTCTCT..................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCT------------CT----CTCTCTC------------T--CTCTCT..............................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................C------------------------------------TCTCTCTCTCTCTCTCTCTCT------------................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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.TCTCTC----------------------------------------------------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCT---------------------------CTCTCTC------------------------------------.................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................T---------------------------CTCTCTC------------------------------------TCTCTCTCTCTC.....................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCTCTCTCT..............................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCAATCA---------------TCAATAAAATCTAAT------------------------------------------------------TGAATTTATGCCGAG------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------CTTCTGTC------------------------------------------T---------------------------CCC---------------------T----------CTCTCT---CTCTCT------------------------------CT----CTCTC--------------TCTCTCT----CTATCTCTCTC----------------TCTCTCTCATCCT------------ATAGACCG-------------------------------------------------------------------------------------------------------------CCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----CTATCTCTCTC----------------TCTCTCTCA........................................................................................................................................2111.00100001000000000000
droSec2
AACTTCC-----------AGCGCCCATCGCACTTTAC--------------------------------------------------------------------------------------------------------------------------------GAGGTGTT--GACTGTGT-CGGCATC------TGGCAG-----------------------------------------------------------------------------------CTTCTGTCGCTCTCT-----------------------------------------------------------CTCCCTC------------------------------------TCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCT------------CTCTCTCTCT----------------------------CTCCCTCTCTCTCC----------CTCC------------------------------------CTCT------CTCTCTCTTTATCATCGCCCCAATTTGGCT-------------------------------------------------CTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CTTTTCAAC---TATCAATAA---------ACTTTGTGA-------------------------------A---------------------------------------------------------TTCTAGCTTTCTGCTTTTGATGT-------TCCAT---CCCCGAT--AAGTTTAT-TTTCATGGACGGATAACAATGACGAACTGTACAGTTTTGCCATATGAAT-----------------------------------------------TGT--------------------------------------------------GACAAA--------ATGCGAATGGCTT----------------CCTCTCT--------CTCTTT---------------------------------------CTCTCTCTCTCTC------------TCTCTCT----CTCTCTCTCTC----------------TCT------CTCT------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................ATAA---------ACTTTGTGA-------------------------------A---------------------------------------------------------TTCTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TCTTT---------------------------------------CTCTCTCTCTCTC------------TCTCT..................................................................................................................................................................................23200.05100100000000
droEre2
TGCTGCG---------------TTG----------------------------------------------------------------------------------------------------------CT-------CCGTTTGGCAT--------------------------------------------------------------------------TGTTTGGT-------CCCATTAGCGCGGGTGTTATCAGTTCTCCAGCTACTGTTTTCTCT---------------------------------------------------------------------------------------------------------------------CTCC----------CT------------------CTCTCTCTCTCTC------------TCTCTCT----CTCTC----------------------CCTCTCTGAT----------------TCTCCTGCTGCCTCCATATCTTTCTCCCTTT------CTC------------------------------------------------------------TGGGT-----------GGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTC------------TCTCTCT----CTCTC----------------------C................................................................................................................................................22200.0510100000

Generated: 05/18/2015 at 05:21 AM