ID:

dps_2706

 Coordinate:

XL_group1e:5704876-5705026 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.6 -3.5 -3.0

Flybase annnotation

exon [dpse_GLEANR_362:4]; CDS [Dpse\GA26449-cds]; intron [Dpse\GA26449-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1_DVirRCHelitron+
mature
star
  1. Unknown_singleton_880:42715-42737 +
  2. XL_group1e:3233138-3233160 -
  3. XL_group1e:5443883-5443905 -
  4. dps_2706  XL_group1e:5704952-5704974 -
  5. Unknown_group_47:24064-24086 -
  6. Unknown_group_314:26719-26741 -
  7. Unknown_group_7:29670-29692 -
  8. XL_group3a:2340519-2340541 +
  9. Unknown_singleton_698:554-576 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAAAGCTTCCTTCTGGAACTCGTTACACACATCCATTTTCACCACAAATCTCATTTTGAGTATCGGGTATAAAAAGATATAGTCTTTAATCGTTAATCTATCTGCCTCCTAACTAACCGCCCACCAAACTGTGTCTCTTGTCCTCCCCCTTCAGATGGGCCGACAGCTGAAGAGTCCACTCAGCGCTGACATGAGTCTCGGTCT
******************************************************************************************************........(((((((((((((((...)))))).....)))...))))))...************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 SRR902010
ovaries
 M059
embryo
 GSM444067
head
.................................................................................................................................TCTTTAATCGTTAATCTATCTGCCT................................................................................................. 25 0 1 2.00 2 0 2 0 0 0
....................................................................................................................TAAAAAGATATAGTCTTTAATCGTTAA............................................................................................................ 27 0 1 1.00 1 0 1 0 0 0
....................................................................................................................TAAAAAGATATAGTCTTTAATCGTTA............................................................................................................. 26 0 1 1.00 1 0 1 0 0 0
....................................................................................................................TAAAAAGATATAGTCTTTAATCGT............................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................TAGTCTTTAATCGTTAATCTATCTGCC.................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................TGAAGAGTCCACTCAGCGCTGAC.............. 23 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................ATAGTCTTTAATCGTTAATCTAT....................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................GTCCACTCAGCCCTGACATG........... 20 1 1 1.00 1 0 0 0 1 0
..............................................................................................................................................................................................TCCCCCTTCAGATGGGCCGACAGCTGA.................................. 27 0 1 1.00 1 1 0 0 0 0
..........................................................TCTGGAACACGTTACGCACAT............................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0
......................................................................................................TTGAGTATCGGGTATAAAAATATATAG.......................................................................................................................... 27 1 3 1.00 3 0 0 3 0 0
.....................................................................................TCACCACAAATCTGTTTTTGAGTATCCGG......................................................................................................................................... 29 3 1 1.00 1 0 1 0 0 0
......................................................................................................TTGAGTATCGGGTATAAAAAGAT.............................................................................................................................. 23 0 9 0.22 2 2 0 0 0 0
......................................................................................................TTGAGTATCGGGTATAAAA.................................................................................................................................. 19 0 20 0.15 3 3 0 0 0 0
..........................ATATATACTTTATGGGGTCGGAAAA........................................................................................................................................................................................................ 25 0 14 0.14 2 2 0 0 0 0
.............................TATACTTTATGGGGTCGGAAAA........................................................................................................................................................................................................ 22 0 17 0.12 2 2 0 0 0 0
...............................TACTTTATGGGGTCGGAAAA........................................................................................................................................................................................................ 20 0 19 0.11 2 0 1 0 0 1
....................................................................................................TTTTGAGTATCGGGTATAAAAAGA............................................................................................................................... 24 0 20 0.10 2 0 0 2 0 0
........................................................................................................GAGTATCGGGTATAAAAAGATGTTG.......................................................................................................................... 25 2 15 0.07 1 1 0 0 0 0
......................................................................................................................................................................................TCTTGACCCCCCCCTTAAG.................................................. 19 3 16 0.06 1 1 0 0 0 0
...........ATGCTGATCAAGAATATATATACTT....................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

GAGCCGATAACTACGACTAGTTCTTATATATATGAAATACCCCAGCCTTTTCGAAGGAAGACCTTGAGCAATGTGTGTAGGTAAAAGTGGTGTTTAGAGTAAAACTCATAGCCCATATTTTTCTATATCAGAAATTAGCAATTAGATAGACGGAGGATTGATTGGCGGGTGGTTTGACACAGAGAACAGGAGGGGGAAGTCTACCCGGCTGTCGACTTCTCAGGTGAGTCGCGACTGTACTCAGAGCCAGA
*************************************************************************************************........(((((((((((((((...)))))).....)))...))))))...****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 M059
embryo
 GSM343916
embryo
 SRR902010
ovaries
 GSM444067
head
........................................................................GTGTGTAGGTAAAAGTGGTGTT............................................................................................................................................................. 22 0 20 4.00 80 80 0 0 0 0 0 0
..........................................................................GTGTAGGTAAAAGTGGTGTTT............................................................................................................................................................ 21 0 20 3.70 74 0 70 0 4 0 0 0
................................................................................................................................................................................................................CTGTCGACTTCTCAGGTGAGT...................... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................GTAGGTAAAAGTGGTGTTT............................................................................................................................................................ 19 0 20 0.45 9 0 0 9 0 0 0 0
...........................................................................TGTAGGTAAAAGTGGTGTT............................................................................................................................................................. 19 0 20 0.35 7 7 0 0 0 0 0 0
...................................................................GCAATGTGTGTAGGTAAAAGTGGTGT.............................................................................................................................................................. 26 0 20 0.30 6 3 0 0 0 0 3 0
..................................................................AGCAATGTGTGTAGGTAAAAGTGGTGT.............................................................................................................................................................. 27 0 4 0.25 1 1 0 0 0 0 0 0
............ACGACTAGTTCTTATATATA........................................................................................................................................................................................................................... 20 0 20 0.15 3 0 0 3 0 0 0 0
.....................................................................AAAGTGTGTAGGTAAAAGTGGTGTTT............................................................................................................................................................ 26 1 20 0.15 3 3 0 0 0 0 0 0
.............................................................................TCGGTCAAAGTGGTGTTTAGAGT....................................................................................................................................................... 23 2 8 0.13 1 0 0 0 0 0 0 1
.......................................................................TGTGTGTAGGTACAAGTGGTGTTTCAAG........................................................................................................................................................ 28 3 10 0.10 1 1 0 0 0 0 0 0
...........................................................................TGTAGGTAAAAGTGGTGTTT............................................................................................................................................................ 20 0 20 0.10 2 0 0 0 0 2 0 0
........................................................................GTGTCTAGGTAAAAGTGGTGTTT............................................................................................................................................................ 23 1 20 0.10 2 0 0 2 0 0 0 0
......................................................................ATGTGTGTAGGTAAAAGTGGTGTTTA........................................................................................................................................................... 26 0 20 0.10 2 0 2 0 0 0 0 0
............................................................................GTAGGTAAAAGTGGTGTTTAG.......................................................................................................................................................... 21 0 20 0.10 2 0 0 2 0 0 0 0
...............................................................................................AGAGTAAAACTCATAGCCCATATT.................................................................................................................................... 24 0 11 0.09 1 1 0 0 0 0 0 0
...............................................................................................AGAGTAAAACTCATAGCCC......................................................................................................................................... 19 0 11 0.09 1 1 0 0 0 0 0 0
.................................................................................................................................................................................TACAGAGACCAGGAGGGCGA...................................................... 20 3 14 0.07 1 1 0 0 0 0 0 0
..........................................................................GTGTAGGTAAAAGTGGTG............................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................AATAGCCCATATTTTTCTCGATC.......................................................................................................................... 23 3 20 0.05 1 0 0 0 1 0 0 0
.........................ATATATATGAAATACCCCAGCCTT.......................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0
........................................................................GTGTGTAGGTAAAAGTGGTGT.............................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1 0 0
.....................................................................AATGTGTGTAGGTAAAAGTGGT................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0
......................CTTATATATATGAAATACCCCA............................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0
..........................................................................TTGTAGGTAAAAGTGGTGTTT............................................................................................................................................................ 21 1 20 0.05 1 0 0 0 0 1 0 0
....................................................................CAATGTGTGTAGGTAAAAGTGG................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0
.........................................................................TGTGTAGGTAAAAGTGGTGTTTA........................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0
...................................................................GCAATGTGTGTAGGTAAAAG.................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0
............ACGACTAGTTCTTATATAT............................................................................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0 0
....................................................................CAATGTGTGTAGGTAAAAGTG.................................................................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0
........................................................................................................CTCATAGCCCATATTTTTCTCGATC.......................................................................................................................... 25 2 20 0.05 1 1 0 0 0 0 0 0
.....................................................................AATGTGTGTAGGTAAAAGTGGTGT.............................................................................................................................................................. 24 0 20 0.05 1 0 0 0 0 1 0 0
.........................................................................TGTGTAGGTAAAAGTGGTGTT............................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0 0
........................................................................GTGTGTAGGTAAAAGTGGTGTTTA........................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0
.................................................................................................AGTAAAACTCATAGCCCATATTT................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:5704826-5705076 - dps_2706 CTCGG-CTATTGATGCTGATCAAGAATA-----TATA--------TAC-TTTATGGGGTCGGAAAAGCTTCCTTCTGGAACTCGTTACACACATCCATTTTCACCACAAATCT--------------CATTTTGAGTATCGGGTATAA-----------------------------------------------------AAAG---------------------------------------------------------------------------------------------ATA------TAGTCTT--------------------------TA-----------------------------------A----------------------TCGTTAATCTATCTGCC--TCCTAACTAACCGC----------------CCACCAAACTGTGTCTCTTGTCCTC---------------------------------------------------------------------------------------CCCCTTCAGATGGG-----------------------------------------------------CCGACAGCTGAAGAGTCCACTCAGCGCTGACAT----------------------GAGTCTCGG------------------------------------------TCT
droPer2 scaffold_21:632442-632609 - TC----------------ATCACAAATC-----T---------------------------------------------------------------------------------------------CATTTTGAGTATCGGGTATAA-----------------------------------------------------AAAG---------------------------------------------------------------------------------------------ATA------TAGTCTT--------------------------TA-----------------------------------A----------------------TCGTTAATCTATCTATCTATCCTAACTAACCGC----------------CCACCAAACTGTGTCTCTTGTCCTC---------------------------------------------------------------------------------------CCCCTTCAGATGGG-----------------------------------------------------CCGACAGCTGAAGAGTCCACTCAGCGCTGACAT----------------------GAGTCTCGG------------------------------------------TCT
droWil2 scf2_1100000004961:1005825-1006057 - CTCGG-ATGTTGATCCTGATCAAGAATA-----TATA--------TAC-TTTGTGGGGTCGGAGATGCTTCCTTCTG---CCTATTACATACATTTTGGCGACTTTAATATACCATTTC-------ACCCTATGGGTGTATGGTATAA-----------------------------------------------------AAAAAA----------------------------------------------------------------------------------------------------CAATTT---------------------------TA-----------------------------------A---TTA----------ACA--------AATAACATTGCC--T--TAACTAACTCC----------------CCAGTAACCT-----------------------------------------------------------------------------------------------------------------TTT-------------CACTCATCGAA------------------------------------------------------------------------------------TAGT---GCATCCTTAAGATGACTTAAAGTTG----------AAAACTTTATCC
droVir3 scaffold_12970:6859427-6859717 + dvi_13362 CTCGG-CTCTTGATGCTAGTCGAAAAG-------AAA--------TTC-TTTAGGTGGTCGCAAATGCTTTCTTTTA---G----TTCAAACTATTTCCTAAAATCGGCCTGTCGATT-------------GTTC-----ATCTATC---ATAATATTATCTGAATGAATAATGA----------------------GA--AGAGTT-----------------------TAACATTAAA----------------------------------------------------------AAA----TGTCATATT--------------------------TG-----------------------------------A-----------------TCTAT--------GTCTCCGTC--TCTTTCTCACCCGC----------------TCTCC-CTCTCTCTCTCT-----------------------------------------------------------------TTCTCACGCTC------------------TCTCATCATCTAT-------------------------GCAGTTGCAAACGGCTGTGGCAACAAC-----------------------------GGCCATGTCACCT-GTGATAAGCAAGAG-------CA------------------------------------------ACG
droMoj3 scaffold_6498:836434-836669 - dmo_1325 CTCAG-CTCGTCGCCCTGATCAAGAATA-----TACTTACTTACTTAC-TTTGTAGGGTCTACCACGCCTCCTTCTG---TCTGTTACATACATTTCAA--AAACCATTATACCCTGATTTCCCATTTTCAATGAGTTCCGGGTTTAA-----------------------------------------------------CAATA--------------AATTAAAGCTTTATACTAAT--------------------------------ATTTCACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTGGGTTTCTTTCCAGG-C-----------CTT----------A---------------------------------------------------------------------GTGGG-----------------------------------------------------TCAAAAGCTGATGAGG------AGCACAGACGT----------------------GAAA---CG------------------------------------------TTT
droGri2 scaffold_15112:2580754-2580992 + CTTGT-TTGTTGATCCCGATGAAGAATA-----TATA--------TAC-ATTATGTAGTCATAGATGCATGTTCCACGCAACTATTCTACTCATTTTTATGGGCTC-------------------------------AGCGTTTATAATGATAATAGTAAATGAATGAATAAGGGCTCTACTCATTTCTCGCAGTGTATAGAGAA----------------------------------------------AAGCGCATC----------------------------------------GCTTG------------------------------------------------------------C-TCTTTAA--GCTAACAAAACGCTGCAT---------------------------------------------------------------------T--------------TT------------------------------------------------------------------------------------------------------------------------------------TCCATGGCGGCAAC----GACATAATT--------------------TA----------------------GATTTTTCG------------------------------------------CCT
droAna3 scaffold_13417:2342619-2342886 + CTCGG-TTGTTGATGGTGATCAAAAATA-----TATA--------TTGTTGTATGGGGTCGGAGAGGATTCCTTCTC---CCTGTTGCATATATTCACAAAAAAATAATATACCCTTGT-------ACTCTACTAGTACCGGATATAA-----------------------------------------------------AAAA---------------------------------------------------------------------------------------------TTAC--------TTT---------------------------CG-----------------------------------A---AAC----------CCC--------ACT---TATA--CTTCCTTTTG---------------------------AACCCAAACCCTAGG-----------TCA------------------CCCAA------CAAACGATCCGTGTGCCCATTGGTTACGCCC----------------------T---GCCCGG----------CAT-----------GCAGCTGC----------------A---------------TGTTGTGAGTGGGCGTGGTCAT----------------------GCCGCCCAC------------------------------------------TAT
droBip1 scf7180000395091:16051-16277 + CTCAG-GAGGTGATCCTGATCAAGAATA-----TATA--------TAC-TTTATAGGGTCGGAGATGTCTCCTTCAC---TGCGTTGCACACTTTTGACCAAAATTATAATACCCTCT-------------GCAA-----GGGTATAA-----------------------------------------------------AAATTTT-------AAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGCCAATTTG--TTAATTTTTG-------TGCGAAACTATGTGCGAAATAATTTGTGTTCATTTGCCAG---------------------------------------------------------------------------------------CCCATTGAAAATTG-----------------------------------------------------TCGAAATTTGA------------------------------------------------------------------------ATCAA----------GAATCCCCTTA
droKik1 scf7180000302544:480487-480713 - CTCGG-CTGTTGATGCTGATCAAGAATA-----TATA--------TAC-TTTATAGGGTCGGAAACGTCTCCTTCAC---TGCGTTGCAAACTTCTGACTGAAATTATAATACCCTG---------------CAA-----GGGTATAA-----------------------------------------------------AAACTGT-------AAACG---------------------------------------------------------------------------------------GTAAA---------------------------------------------------------------C------------------G---GG-----CCC------------------GATATGCTTA--------------------TTTGTCTTTAATTCGAAGC--------CAAT---------------------------------------------TAATTTCTCCCCTCCGGTTTATTGTTTTTCCTTTTTATTTGG----------------------------------------------------TGTCTAGAGCAAAAGA---------------------------------------------------------------------------------------------GT
droFic1 scf7180000451815:3934-4148 - TTCTA-CTCGTGATGCTGATAAAGAATA-----TATA--------TAC-TTTACGGGGTCTGAGGTGTCTCCTTCAC---AGCGTTGCAAACTTCTGACTGAAATTATAATACCCTTTT-------GCTCTGCAA-----GGATATAA-----------------------------------------------------TAAG---------------------------------------------------------------------------------------------ATA------TTGCTAT--------------------------TA-----------------------------------T----------------------TTGATAA--------------------------T----------------------------------TGCCAGCCCATCTCACAATTAGTGACCTTAAG-AATATCAC--------------------------------------------------------TCTAGTTTTC-------------CTGCCACCAAA------------------------------------------------------------------------------------TACG---ACAT----------------------------------------CTG
droEle1 scf7180000491087:529237-529466 + CCTATCCTAGTGATGCCGATCAAGATCATATGATATA--------TAC-TTTATAGGGTCGGAAATGCCTTCTGAAC---TGCATTGCAAACTTCTGACTGAAATTAACCAGCCTCTT--------------GA------------AA-----------------------------------------------------AAAATGT-------------------GATTTTTGCAG--TGCACTTTGTATTTTGCATTTCTTTTCGGAGTATTCTGCC------GGGTTTCAGTCCACACACA------------------------------------------------------------TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGG------------------------------------------------------CTAAGCTGGA------------------------------------------------------------------------GTCAGACAACTTTTATGACTTTCTCG
droRho1 scf7180000765085:366-610 + CTCAG-GAGGTGATCCTGATCAAGAATA-----TATA--------TAC-TTTATAGGGTCGGAGATGTCTCCTTCAC---TGCGTTGCACACTTTTGACCAAAATTATAATACCCTCT-------------GCAA-----GGGTATAA-----------------------------------------------------AAATGTTCTCCAAA-----AATTGGCGATCTATACTCAA--------------------------------CTTACAAAAAAACCGGC---------GAAATTA------------------------------------------------------------TACATTTTGAC------------------C---TG-----AAT------------------GTTTCGTTTTCAA----------------------------------A-----------------C------------------------------------------------------------------------------TTGA-----------------------------------------T----------TGTCGACAGATCAAAAATAAACGCAACGAGGAC-------------------------------GG------------------------------------------AAG
droBia1 scf7180000302087:182962-183144 + CTCGT-CTTGTGACGCTGATCAAGAATA-----TATA--------TAC-TTTATGGGATCGGAAACGTCTCCTTCAC---GGCGTTGCAAACTTCTGACTGAAATCATTATACTCTCT-------------GCAA-----GGGTATAA-----------------------------------------------------AAAC---------------------------------------------------------------------------------------------AAA------TG--------------------------------------------------------------------TTAACTG-------------------A-AATTTATTTGTC--TTATCAATACCTAT----------------CGATTAACCTAAATATCTTGCCATG---------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC
droTak1 scf7180000415398:69648-69855 + CTCGG-CTAGTGACCCTGATCAAGAATA-----TATA--------TAC-TTTATGGGGTCGGAAACGCTTCCTTCTA---GCTGTTACATACTTTTT-----------------------------ACTCTACGAGTAACGGGTATAA-----------------------------------------------------TAAATG----------------------------------------------------------------------------------------------------TAATATA--------------------------TA-----------------------------------T----------------------TAATTTTCTTATTTAC--------------------------------------------------ATTACAGC-C-----------CCT----------G---------------------------------------------------------------------ATTGTTCCACCTCAGCAG-----------A----------------TAGCAGCAAC-----------------------------GGATTTGCAACCCAGCACTTT-------GCTGCCGGA------------------------------------------TCT
droEug1 scf7180000409196:64857-65078 - CTTCG-CTATTGATTCTGATCAATAA-----------------------ATTATAGGGTCGGAAACGCTTCCTTCTA---CCTGATACATACTATTCAACGAATCTAATGTACCCTTTT-------ACTCTACGAGTAACGGGTATTA-----------------------------------------------------AAAT---------------------------------------------------------------------------------------------AAA----TGTTGTATA--------------------------TA-----------------------------------A-----------------CCCCT--------CCCTCCGTC--TGATGTTCAACAGT----------------CTC--------------------------CTTCATTGTCACCGCTGCC--G-TCCACCAC--------------------------------------------------------TCCAATCGTG-----------------------------------------------------ACGACACCGGT--------------------------------------------AACA---GC------------------------------------------CCA
dm3 chr2RHet:1856364-1856518 + CTCCG-TTTTTGAACCTGATCAATAATA-----TATA--------TAC-TTTATATGGTCGGAAAAGCTTCCTTCTG---CACGATACATACTTTTCAAGGAATCTAGTATACT---------------------------AGTATAA-----------------------------------------------------AATA----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTAAAA------------------A---CA-----AATGTATTTGCT--------------------------------------------------------------------------------------------------------------------------GCT-C-----------------ATCTACA---------------------------------------------------------------------------------------------------------------AAAG--GT---GT------------------------------------------TTC
droSim2 2l:21162510-21162713 - CTCGA-CTATTGATTCTGATCAAGA-TT-----TATA--------TAC-TTTATATAGTCGGAAACGCTTCCTTCTG---TCTGTTACATACTTTTCAACGAATCTAGTATACCCTTTT-------ACTCTACGAGTACCGGGTATAA-----------------------------------------------------ATAC---------------------------------------------------------------------------------------------ATACTTA------------------------------------------------------------TATTTTTAAAC------------------C---CT-----AAT------------------GAAATGCTTACAAAACCATAGAC----------------------------------CAATTTT---------------------------------------------TTGCGCT-T-----------------ACCTGGA---------------------------------------------------------------------------------------------------------------AAAG-------GG------------------------------------------GCC
droSec2 scaffold_28:483364-483567 - CTCGA-CTATTGATTCTGATCAAGAAT------TATA--------TAC-TTTATATAGTCGGAAACGCTTCCTTCTG---TCTGTTACATACTTTTCAACGAATCTAGTATGCCCTTTT-------ACTCTACGAGTACCGGGTACAA-----------------------------------------------------ATAC---------------------------------------------------------------------------------------------ATACTTA------------------------------------------------------------TATTTTTAAAC------------------C---CT-----AAT------------------GAAATGCTTACAAGACCATAGAC----------------------------------CAATTTT---------------------------------------------TTGCGCT-T-----------------ACCTGGA---------------------------------------------------------------------------------------------------------------AAAG-------GG------------------------------------------GCC
droYak3 chr2h:548967-549246 + CTCGG-CTATTGATCCTGATCAAGAATA-----TATA--------TAC-TTTATATGGTCGGAAACGCTTCCTTCTG---CCTGTTACATACTTTTCAACGAATCTAGTATACCCTTTT-------ACTCTACGAGTAACGGGTGTAA-----------------------------------------------------AAACGTC-------GATCG---------------------------------------------------------------------------------------GCACT-TCGTTGTTTAATATTATAACAAGAAAATCTCCACCATTCTTGATTTAAGGAA-----------TCGAACGAAACAATGCAT---------------------------------------------------------------------A--------------CTTCACCGTCGTGTCTGAC--G-CCCGCGAGTGCCAAACAAT---------------------------------------------------------------------------------------------CCATCGGGTC------------------------------AATGACTT----------------------AGCACCTGC------------------------------------------AGA
droEre2 scaffold_4770:522537-522706 + ATCGG-CAATTGATTCTGATCAAGAATA-----TATA--------TAC-TTTATATGGTCGGAAACGCTTCATTTTA---TATGTTACATACTTTTCAACGTATCT-------------------------ACAAGAATCGG-----A-----------------------------------------------------AAAT---------------------------------------------------------------------------------------------GTA------TC--------------------------------------------------------------------TTCATTT-------------------T-TATACATTTG--TTTCCTTTCTAGCGCC----------------CTTTCTAGCTTAATACATTGTACTA---------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CTCGG-CTATTGATGCTGATCAAGAATA-----TATA--------TAC-TTTATGGGGTCGGAAAAGCTTCCTTCTGGAACTCGTTACACACATCCATTTTCACCACAAATCT--------------CATTTTGAGTATCGGGTATAA-----------------------------------------------------AAAG---------------------------------------------------------------------------------------------ATA------TAGTCTT--------------------------TA-----------------------------------A----------------------TCGTTAATCTATCTGCC--TCCTAACTAACCGC----------------CCACCAAACTGTGTCTCTTGTCCTC---------------------------------------------------------------------------------------CCCCTTCAGATGGG-----------------------------------------------------CCGACAGCTGAAGAGTCCACTCAGCGCTGACAT----------------------GAGTCTCGG------------------------------------------TCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................TCTT--------------------------TA-----------------------------------A----------------------TCGTTAATCTATCTGCC--T.............................................................................................................................................................................................................................................................................................................................2512.0020000000020
.................................................................................................................................................TAA-----------------------------------------------------AAAG---------------------------------------------------------------------------------------------ATA------TAGTCTT--------------------------TA-----------------------------------A----------------------TCGTTAA..........................................................................................................................................................................................................................................................................................................................................2711.0010000000010
.................................................................................................................................................TAA-----------------------------------------------------AAAG---------------------------------------------------------------------------------------------ATA------TAGTCTT--------------------------TA-----------------------------------A----------------------TCGTTA...........................................................................................................................................................................................................................................................................................................................................2611.0010000000010
.................................................................................................................................................TAA-----------------------------------------------------AAAG---------------------------------------------------------------------------------------------ATA------TAGTCTT--------------------------TA-----------------------------------A----------------------TCGT.............................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...................................................................................................................................................................................................................................................................................................................TAGTCTT--------------------------TA-----------------------------------A----------------------TCGTTAATCTATCTGCC--..............................................................................................................................................................................................................................................................................................................................2711.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGTCCACTCAGCGCTGAC..............................................................................2311.0010100000000
............................................................................................................................................................................................................................................................................................................A------TAGTCTT--------------------------TA-----------------------------------A----------------------TCGTTAATCTAT.....................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---------------------------------------------------------------------------------------CCCCTTCAGATGGG-----------------------------------------------------CCGACAGCTGA..................................................................................................2711.0010100000000
...................................................................................................................................TTGAGTATCGGGTATAA-----------------------------------------------------AAAG---------------------------------------------------------------------------------------------AT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.2220200000000
...................................................................................................................................TTGAGTATCGGGTATAA-----------------------------------------------------AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530300000000
...........................A-----TATA--------TAC-TTTATGGGGTCGGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25140.1420200000000
...................................TA--------TAC-TTTATGGGGTCGGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.1220200000000
.............................................TAC-TTTATGGGGTCGGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.1120000010010
.................................................................................................................................TTTTGAGTATCGGGTATAA-----------------------------------------------------AAAG---------------------------------------------------------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000200
............ATGCTGATCAAGAATA-----TATA--------TAC-TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510010000000
droPer2
TC----------------ATCACAAATC-----T---------------------------------------------------------------------------------------------CATTTTGAGTATCGGGTATAA-----------------------------------------------------AAAG---------------------------------------------------------------------------------------------ATA------TAGTCTT--------------------------TA-----------------------------------A----------------------TCGTTAATCTATCTATCTATCCTAACTAACCGC----------------CCACCAAACTGTGTCTCTTGTCCTC---------------------------------------------------------------------------------------CCCCTTCAGATGGG-----------------------------------------------------CCGACAGCTGAAGAGTCCACTCAGCGCTGACAT----------------------GAGTCTCGG------------------------------------------TCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................TA------TAGTCTT--------------------------TA-----------------------------------A----------------------TCGTTAATCTAT.....................................................................................................................................................................................................................................................................................................................................2411.001010000
droWil2
CTCGG-ATGTTGATCCTGATCAAGAATA-----TATA--------TAC-TTTGTGGGGTCGGAGATGCTTCCTTCTG---CCTATTACATACATTTTGGCGACTTTAATATACCATTTC-------ACCCTATGGGTGTATGGTATAA-----------------------------------------------------AAAAAA----------------------------------------------------------------------------------------------------CAATTT---------------------------TA-----------------------------------A---TTA----------ACA--------AATAACATTGCC--T--TAACTAACTCC----------------CCAGTAACCT-----------------------------------------------------------------------------------------------------------------TTT-------------CACTCATCGAA------------------------------------------------------------------------------------TAGT---GCATCCTTAAGATGACTTAAAGTTG----------AAAACTTTATCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCC----------------CCAGTAACCT-----------------------------------------------------------------------------------------------------------------TTT-------------CACTCATCGAA------------------------------------------------------------------------------------......................................................2721.00202000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCT-----------------------------------------------------------------------------------------------------------------TTT-------------CACTCATCGAA------------------------------------------------------------------------------------TAGT---G..............................................2540.25101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCT-----------------------------------------------------------------------------------------------------------------TTT-------------CACTCATCGAA------------------------------------------------------------------------------------TAGT---GCA............................................2740.25101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTAAGATGACTTAAAGTTG----------AAAAC.......27110.18202000
.................................................................TGCTTCCTTCTG---CCTATTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.13101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTAAGATGACTTAAAGTTG----------AAAACT......28110.09101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGACTTAAAGTTG----------AAAACT......24120.08100010
....................................................................TTCCTTCTG---CCTATTACATAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.05101000
....................................................GTGGGGTCGGAGATGCTTCCTTCTG---CCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100
..................ATCAAGAATA-----TATA--------TAC-TTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100
..................................................................................TATTACATACATTTTGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
droVir3
CTCGG-CTCTTGATGCTAGTCGAAAAG-------AAA--------TTC-TTTAGGTGGTCGCAAATGCTTTCTTTTA---G----TTCAAACTATTTCCTAAAATCGGCCTGTCGATT-------------GTTC-----ATCTATC---ATAATATTATCTGAATGAATAATGA----------------------GA--AGAGTT-----------------------TAACATTAAA----------------------------------------------------------AAA----TGTCATATT--------------------------TG-----------------------------------A-----------------TCTAT--------GTCTCCGTC--TCTTTCTCACCCGC----------------TCTCC-CTCTCTCTCTCT-----------------------------------------------------------------TTCTCACGCTC------------------TCTCATCATCTAT-------------------------GCAGTTGCAAACGGCTGTGGCAACAAC-----------------------------GGCCATGTCACCT-GTGATAAGCAAGAG-------CA------------------------------------------ACGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAACGGCTGTGGCAACAAC-----------------------------GGC...............................................................................2511.001000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGCTGTGGCAACAAC-----------------------------GGC...............................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTCAG-CTCGTCGCCCTGATCAAGAATA-----TACTTACTTACTTAC-TTTGTAGGGTCTACCACGCCTCCTTCTG---TCTGTTACATACATTTCAA--AAACCATTATACCCTGATTTCCCATTTTCAATGAGTTCCGGGTTTAA-----------------------------------------------------CAATA--------------AATTAAAGCTTTATACTAAT--------------------------------ATTTCACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTGGGTTTCTTTCCAGG-C-----------CTT----------A---------------------------------------------------------------------GTGGG-----------------------------------------------------TCAAAAGCTGATGAGG------AGCACAGACGT----------------------GAAA---CG------------------------------------------TTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................TGATTTCCCATTTTCAATGAGTTCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003300000
...................................................................................................................TGATTTCCCATTTTCAATGAGTTCCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
...................................................................................................................TGATTTCCCATTTTCAATGAGTTCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCTGATGAGG------AGCACAGAC..............................................................................2311.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-----------------------------------------------------TCAAAAGCTGATGAGG------AGCAC..................................................................................2511.001100000
...................................................................................................................TGATTTCCCATTTTCAATGAGTTCCGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...................................................................................................................TGATTTCCCATTTTCAATGAGTTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGG------AGCACAGACGT----------------------GAAA---CG------------------------------------------TTT2411.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------------------TCAAAAGCTGATGAGG------AGCACA.................................................................................2311.001100000
....................................................................................................................GATTTCCCATTTTCAATGAGTTCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droGri2
CTTGT-TTGTTGATCCCGATGAAGAATA-----TATA--------TAC-ATTATGTAGTCATAGATGCATGTTCCACGCAACTATTCTACTCATTTTTATGGGCTC-------------------------------AGCGTTTATAATGATAATAGTAAATGAATGAATAAGGGCTCTACTCATTTCTCGCAGTGTATAGAGAA----------------------------------------------AAGCGCATC----------------------------------------GCTTG------------------------------------------------------------C-TCTTTAA--GCTAACAAAACGCTGCAT---------------------------------------------------------------------T--------------TT------------------------------------------------------------------------------------------------------------------------------------TCCATGGCGGCAAC----GACATAATT--------------------TA----------------------GATTTTTCG------------------------------------------CCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CTCGG-TTGTTGATGGTGATCAAAAATA-----TATA--------TTGTTGTATGGGGTCGGAGAGGATTCCTTCTC---CCTGTTGCATATATTCACAAAAAAATAATATACCCTTGT-------ACTCTACTAGTACCGGATATAA-----------------------------------------------------AAAA---------------------------------------------------------------------------------------------TTAC--------TTT---------------------------CG-----------------------------------A---AAC----------CCC--------ACT---TATA--CTTCCTTTTG---------------------------AACCCAAACCCTAGG-----------TCA------------------CCCAA------CAAACGATCCGTGTGCCCATTGGTTACGCCC----------------------T---GCCCGG----------CAT-----------GCAGCTGC----------------A---------------TGTTGTGAGTGGGCGTGGTCAT----------------------GCCGCCCAC------------------------------------------TATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTCAG-GAGGTGATCCTGATCAAGAATA-----TATA--------TAC-TTTATAGGGTCGGAGATGTCTCCTTCAC---TGCGTTGCACACTTTTGACCAAAATTATAATACCCTCT-------------GCAA-----GGGTATAA-----------------------------------------------------AAATTTT-------AAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGCCAATTTG--TTAATTTTTG-------TGCGAAACTATGTGCGAAATAATTTGTGTTCATTTGCCAG---------------------------------------------------------------------------------------CCCATTGAAAATTG-----------------------------------------------------TCGAAATTTGA------------------------------------------------------------------------ATCAA----------GAATCCCCTTASizeHit CountTotal NormTotal
No Reads
droKik1
CTCGG-CTGTTGATGCTGATCAAGAATA-----TATA--------TAC-TTTATAGGGTCGGAAACGTCTCCTTCAC---TGCGTTGCAAACTTCTGACTGAAATTATAATACCCTG---------------CAA-----GGGTATAA-----------------------------------------------------AAACTGT-------AAACG---------------------------------------------------------------------------------------GTAAA---------------------------------------------------------------C------------------G---GG-----CCC------------------GATATGCTTA--------------------TTTGTCTTTAATTCGAAGC--------CAAT---------------------------------------------TAATTTCTCCCCTCCGGTTTATTGTTTTTCCTTTTTATTTGG----------------------------------------------------TGTCTAGAGCAAAAGA---------------------------------------------------------------------------------------------GTSizeHit CountTotal NormTotal
No Reads
droFic1
TTCTA-CTCGTGATGCTGATAAAGAATA-----TATA--------TAC-TTTACGGGGTCTGAGGTGTCTCCTTCAC---AGCGTTGCAAACTTCTGACTGAAATTATAATACCCTTTT-------GCTCTGCAA-----GGATATAA-----------------------------------------------------TAAG---------------------------------------------------------------------------------------------ATA------TTGCTAT--------------------------TA-----------------------------------T----------------------TTGATAA--------------------------T----------------------------------TGCCAGCCCATCTCACAATTAGTGACCTTAAG-AATATCAC--------------------------------------------------------TCTAGTTTTC-------------CTGCCACCAAA------------------------------------------------------------------------------------TACG---ACAT----------------------------------------CTGSizeHit CountTotal NormTotal
No Reads
droEle1
CCTATCCTAGTGATGCCGATCAAGATCATATGATATA--------TAC-TTTATAGGGTCGGAAATGCCTTCTGAAC---TGCATTGCAAACTTCTGACTGAAATTAACCAGCCTCTT--------------GA------------AA-----------------------------------------------------AAAATGT-------------------GATTTTTGCAG--TGCACTTTGTATTTTGCATTTCTTTTCGGAGTATTCTGCC------GGGTTTCAGTCCACACACA------------------------------------------------------------TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGG------------------------------------------------------CTAAGCTGGA------------------------------------------------------------------------GTCAGACAACTTTTATGACTTTCTCGSizeHit CountTotal NormTotal
No Reads
droRho1
CTCAG-GAGGTGATCCTGATCAAGAATA-----TATA--------TAC-TTTATAGGGTCGGAGATGTCTCCTTCAC---TGCGTTGCACACTTTTGACCAAAATTATAATACCCTCT-------------GCAA-----GGGTATAA-----------------------------------------------------AAATGTTCTCCAAA-----AATTGGCGATCTATACTCAA--------------------------------CTTACAAAAAAACCGGC---------GAAATTA------------------------------------------------------------TACATTTTGAC------------------C---TG-----AAT------------------GTTTCGTTTTCAA----------------------------------A-----------------C------------------------------------------------------------------------------TTGA-----------------------------------------T----------TGTCGACAGATCAAAAATAAACGCAACGAGGAC-------------------------------GG------------------------------------------AAGSizeHit CountTotal NormTotal
No Reads
droBia1
CTCGT-CTTGTGACGCTGATCAAGAATA-----TATA--------TAC-TTTATGGGATCGGAAACGTCTCCTTCAC---GGCGTTGCAAACTTCTGACTGAAATCATTATACTCTCT-------------GCAA-----GGGTATAA-----------------------------------------------------AAAC---------------------------------------------------------------------------------------------AAA------TG--------------------------------------------------------------------TTAACTG-------------------A-AATTTATTTGTC--TTATCAATACCTAT----------------CGATTAACCTAAATATCTTGCCATG---------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCSizeHit CountTotal NormTotal
No Reads
droTak1
CTCGG-CTAGTGACCCTGATCAAGAATA-----TATA--------TAC-TTTATGGGGTCGGAAACGCTTCCTTCTA---GCTGTTACATACTTTTT-----------------------------ACTCTACGAGTAACGGGTATAA-----------------------------------------------------TAAATG----------------------------------------------------------------------------------------------------TAATATA--------------------------TA-----------------------------------T----------------------TAATTTTCTTATTTAC--------------------------------------------------ATTACAGC-C-----------CCT----------G---------------------------------------------------------------------ATTGTTCCACCTCAGCAG-----------A----------------TAGCAGCAAC-----------------------------GGATTTGCAACCCAGCACTTT-------GCTGCCGGA------------------------------------------TCTSizeHit CountTotal NormTotal
No Reads
droEug1
CTTCG-CTATTGATTCTGATCAATAA-----------------------ATTATAGGGTCGGAAACGCTTCCTTCTA---CCTGATACATACTATTCAACGAATCTAATGTACCCTTTT-------ACTCTACGAGTAACGGGTATTA-----------------------------------------------------AAAT---------------------------------------------------------------------------------------------AAA----TGTTGTATA--------------------------TA-----------------------------------A-----------------CCCCT--------CCCTCCGTC--TGATGTTCAACAGT----------------CTC--------------------------CTTCATTGTCACCGCTGCC--G-TCCACCAC--------------------------------------------------------TCCAATCGTG-----------------------------------------------------ACGACACCGGT--------------------------------------------AACA---GC------------------------------------------CCASizeHit CountTotal NormTotal
No Reads
dm3
CTCCG-TTTTTGAACCTGATCAATAATA-----TATA--------TAC-TTTATATGGTCGGAAAAGCTTCCTTCTG---CACGATACATACTTTTCAAGGAATCTAGTATACT---------------------------AGTATAA-----------------------------------------------------AATA----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTAAAA------------------A---CA-----AATGTATTTGCT--------------------------------------------------------------------------------------------------------------------------GCT-C-----------------ATCTACA---------------------------------------------------------------------------------------------------------------AAAG--GT---GT------------------------------------------TTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................TTATATGGTCGGAAAAGCTTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................253441.0013230000000000000000000000214000000000000001010140201010100210000000000000000000000000000000000000000000000000000000000000000000000000000000000000358788928941782242199371700000000000000000000000000000000200109101028000007131402500000000370901373000000000001020000000000000000000000000000000001000000000000028000020010100000020195470000000000000079528659000000
..................................................TTATATGGTCGGAAAAGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24443.25173000200000000000000000023000000000000000000200000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123024191480073213000000000000000000000000000000000002020000510000417000100000000030003130000000000000000000000000000000000000000000000000000000000000000000000000000241000000000000003554000000
...................................................TATATGGTCGGAAAAGCTTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24330.00900000000000000000000000020000000000000000003000100011000000000000000000000000000000000010000000000000000000000000000000000000000000000001000030000111200202100000000000000000000000000000000000001000008000000400000000000000000002000000000000000000000000000000000000000000000000000000000000100000000000000021815000000000000003112000000
..................................................TTATATGGTCGGAAAAGCTTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23514.60730000000000000000000000010000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013002002010110011000000000000000000000000000000000000010000000000011000100000000030201130000000000000000000000000000000000000000000000000000000000000000001000000000130000000000000001100000000
..................................................TTATATGGTCGGAAAAGCTTCCTTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2639.00270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000013100002000000000000000000000000000000000000000000000000042000000000000050002030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000
..................................................TTATATGGTCGGAAAAGCTTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2258.80440000000000000000000000000000000000000010001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005003001010214300000000000000000000000000000000000000000000000003000000000000010101210000000000000000000000000000000000000000000000000000000000000000000000000000411000000000000003300000000
.................................................TTTATATGGTCGGAAAAGCTTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2638.332500000000000000000000001000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011001100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113000000000000002000000000
..................................ATA--------TAC-TTTATATGGTCGGAAAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2546.00240000000000000000000000000000000000000000000000001010000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000001000000000000000300120000000000000000000000000000000000000000000000000000000000000000000000000000262000000000000000000000000
..................................................TTATATGGTCGGAAAAGCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2165.50330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003111100103200000000000000000000000000000000000000000000000002300000000000000000010000000000000000000000000000000000000000000000000050000000000000000000000000110000000000000001150000000
.............ACCTGATCAATAATA-----TATA--------TAC-TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ATATGGTCGGAAAAGCTTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2334.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000100000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................TAATA-----TATA--------TAC-TTTATATGGTCGGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TAC-TTTATATGGTCGGAAAAGCTTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2653.80190000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010101210000000000000000000000000000000000000000000000000000000000000000000000000000412000000000000001000000000
.............................................TAC-TTTATATGGTCGGAAAAGCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2563.67220000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100001000100000000000000000000000000000000000000000000000000000000000000000000001130000000000000000000000000000000000000000000000000000000000000000000200000000610000000000000000110000000
.................................................TTTATATGGTCGGAAAAGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2543.50140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000011000000100000000000000000000000000000000000001001000000000000003000000000001010000000000000000000000000000000000000000000000000000000000002000000000000000001000000000000000000000000
.............................................TAC-TTTATATGGTCGGAAAAGCTTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2753.00150000000000000000000000000000000000001000000000002000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000001000000000000000000000010001020000000000000000000000000000000000000000000000000000000000000000000100000000102000000000000000000000000
..........TGAACCTGATCAATAATA-----T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTGCT--------------------------------------------------------------------------------------------------------------------------GCT-C-----------------ATCTACA---------------------------------------------------------------------------------------------------------------AAAG--GT---GT------------------------------------------T..2523.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGCT--------------------------------------------------------------------------------------------------------------------------GCT-C-----------------ATCTACA---------------------------------------------------------------------------------------------------------------AAAG--GT---GT------------------------------------------T..2423.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTATATGGTCGGAAAAGCTTCCTTCTG---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2732.6780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001100000000000000000000000000000000000000000000000000000004000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TAC-TTTATATGGTCGGAAAAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2362.67160000000000000000000000000000000000000000000000000000100000000000000000000000000000300010000000000000000000000000000000000000000000000000000002100000000100000000000000000000000000000000000000000000000000001000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000
.........................................................................................TACTTTTCAAGGAATCTAGTATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2362.17130000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000100000000330000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................TATGGTCGGAAAAGCTTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2242.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000010000000001000000100000000100000000000000000000000000
.....................................................................TCCTTCTG---CACGATACATACTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ACT---------------------------AGTATAA-----------------------------------------------------AATA----------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTAAAA------------------A---...................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCCG-TTTTTGAACCTGATCAATAATA-----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTGAACCTGATCAATAATA-----TAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTTTTGAACCTGATCAATAATA-----TA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATA--------TAC-TTTATATGGTCGGAAAAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2641.7570000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000110000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................TATGGTCGGAAAAGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2171.57110000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100060000000000000000000000000000000000000001000000000000
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droSim2
CTCGA-CTATTGATTCTGATCAAGA-TT-----TATA--------TAC-TTTATATAGTCGGAAACGCTTCCTTCTG---TCTGTTACATACTTTTCAACGAATCTAGTATACCCTTTT-------ACTCTACGAGTACCGGGTATAA-----------------------------------------------------ATAC---------------------------------------------------------------------------------------------ATACTTA------------------------------------------------------------TATTTTTAAAC------------------C---CT-----AAT------------------GAAATGCTTACAAAACCATAGAC----------------------------------CAATTTT---------------------------------------------TTGCGCT-T-----------------ACCTGGA---------------------------------------------------------------------------------------------------------------AAAG-------GG------------------------------------------GCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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.....................................................................TCCTTCTG---TCTGTTACATACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.82900000030600000000
.............................................TAC-TTTATATAGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.8016000000001600000000
.....................................................................TCCTTCTG---TCTGTTACATACTTTTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.80400000000220000000
...................................TA--------TAC-TTTATATAGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.7515000000015000000000
..........................TT-----TATA--------TAC-TTTATATAGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100000001000000000
....................................................................TTCCTTCTG---TCTGTTACATACTTTTCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2940.50200000000200000000
...................................................TATATAGTCGGAAACGCTTCCTTCTG---T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.40200000002000000000
...................................................TATATAGTCGGAAACGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.40800000044000000000
..................................ATA--------TAC-TTTATATAGTCGGAAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.40800000060000020000
.............................................TAC-TTTATATAGTCGGAAACGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.30600000000600000000
.................................TATA--------TAC-TTTATATAGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.30600000005000001000
.....................................................................TCCTTCTG---TCTGTTACATACTTTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.25200000011000000000
.............................................TAC-TTTATATAGTCGGAAACGCTTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.25500000020030000000
.....................................................................TCCTTCTG---TCTGTTACATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.21300000010110000000
.......................................................TAGTCGGAAACGCTTCCTTCTG---TCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.20100000001000000000
..................................................TTATATAGTCGGAAACGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.20400000031000000000
.............................................TAC-TTTATATAGTCGGAAACGCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.20400000000400000000
.............................................TAC-TTTATATAGTCGGAAACGCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.20400000000040000000
.............................................................................................TTTCAACGAATCTAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.20400000000004000000
...................................................TATATAGTCGGAAACGCTTCCTTCTG---TCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2950.20100000000010000000
....................................................................TTCCTTCTG---TCTGTTACATACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.18200000011000000000
.....................................................................TCCTTCTG---TCTGTTACATACTTTTCAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29110.18200000010100000000
.................................................................................CTGTTACATACTTTTCAACGAATCTAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.15300000000012000000
.............................................................................................TTTCAACGAATCTAGTATACCCTTTT-------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15300000000000003000
......................................................................................ACATACTTTTCAACGAATCTAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.15300000000030000000
..............................................................................................................TACCCTTTT-------ACTCTACGAGTACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2380.13100000000000010000
....................................................................TTCCTTCTG---TCTGTTACATACTTTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.13100000001000000000
.....................................................TATAGTCGGAAACGCTTCCTTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10200100000010000000
.................................................TTTATATAGTCGGAAACGCTTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200000000200000000
......................................................................................ACATACTTTTCAACGAATCTAGTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200000000000020000
..................................ATA--------TAC-TTTATATAGTCGGAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10200000000200000000
.................................TATA--------TAC-TTTATATAGTCGGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200000000000002000
................................................................ACGCTTCCTTCTG---TCTGTTACATACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26100.10100000010000000000
....................................................................TTCCTTCTG---TCTGTTACATACTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.10100000000100000000
.............................................TAC-TTTATATAGTCGGAAACGCTTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10200100000100000000
....................................................................................TTACATACTTTTCAACGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10200000002000000000
.....................................................................TCCTTCTG---TCTGTTACATACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.09100000000100000000
....................................................................TTCCTTCTG---TCTGTTACATACTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.09100000000100000000
....................................................................TTCCTTCTG---TCTGTTACATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.08100000001000000000
.......................................................................CTTCTG---TCTGTTACATACTTTTCAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27160.06100000000100000000
....................................................................TTCCTTCTG---TCTGTTACATACTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.06100000000010000000
.....................................................................TCCTTCTG---TCTGTTACATACTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.06100000010000000000
.....................................................TATAGTCGGAAACGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000001000000000
........................................................................TTCTG---TCTGTTACATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
..................................................................................TGTTACATACTTTTCAACGAATCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000010000000
..................................................TTATATAGTCGGAAACGCTTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
.................................................TTTATATAGTCGGAAACGCTTCCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000010000000
.............................................TAC-TTTATATAGTCGGAAACGCTTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000100000000
..................................ATA--------TAC-TTTATATAGTCGGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001000000000000
.................................TATA--------TAC-TTTATATAGTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000010000000000
........................................................................TTCTG---TCTGTTACATACTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000010000000
...................................................TATATAGTCGGAAACGCTTCCTTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
.............................................................................................TTTCAACGAATCTAGTATACCCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000000010000
.................................TATA--------TAC-TTTATATAGTCGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000001000000000
............................................................................................TTTTCAACGAATCTAGTATACCCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000000010000
.............................................................................................TTTCAACGAATCTAGTATACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000010000000000
.................................................TTTATATAGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000001000000000
..................................ATA--------TAC-TTTATATAGTCGGAAACGCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000010000000000
..................................................................................TGTTACATACTTTTCAACGAATCTAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000001000000000
..................................ATA--------TAC-TTTATATAGTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
..................................ATA--------TAC-TTTATATAGTCGGAAACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000010000000000
.........................................................................................................TAGTATACCCTTTT-------ACTCTACGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
....................................A--------TAC-TTTATATAGTCGGAAACGCTTCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05100000000010000000
droSec2
CTCGA-CTATTGATTCTGATCAAGAAT------TATA--------TAC-TTTATATAGTCGGAAACGCTTCCTTCTG---TCTGTTACATACTTTTCAACGAATCTAGTATGCCCTTTT-------ACTCTACGAGTACCGGGTACAA-----------------------------------------------------ATAC---------------------------------------------------------------------------------------------ATACTTA------------------------------------------------------------TATTTTTAAAC------------------C---CT-----AAT------------------GAAATGCTTACAAGACCATAGAC----------------------------------CAATTTT---------------------------------------------TTGCGCT-T-----------------ACCTGGA---------------------------------------------------------------------------------------------------------------AAAG-------GG------------------------------------------GCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................TCCTTCTG---TCTGTTACATACTTTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.2011000
droYak3
CTCGG-CTATTGATCCTGATCAAGAATA-----TATA--------TAC-TTTATATGGTCGGAAACGCTTCCTTCTG---CCTGTTACATACTTTTCAACGAATCTAGTATACCCTTTT-------ACTCTACGAGTAACGGGTGTAA-----------------------------------------------------AAACGTC-------GATCG---------------------------------------------------------------------------------------GCACT-TCGTTGTTTAATATTATAACAAGAAAATCTCCACCATTCTTGATTTAAGGAA-----------TCGAACGAAACAATGCAT---------------------------------------------------------------------A--------------CTTCACCGTCGTGTCTGAC--G-CCCGCGAGTGCCAAACAAT---------------------------------------------------------------------------------------------CCATCGGGTC------------------------------AATGACTT----------------------AGCACCTGC------------------------------------------AGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................CTTCTG---CCTGTTACATACTTTTCAACGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.6513013000000000
..........................................................TCGGAAACGCTTCCTTCTG---CCTGTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.30606000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AACGAAACAATGCAT---------------------------------------------------------------------A--------------CTTCACC............................................................................................................................................................................................................................................................23200.15301200000000
...........................................................................................................................................................................................................................................................................................................................................................................................AACGAAACAATGCAT---------------------------------------------------------------------A--------------CTTCACCGTCG........................................................................................................................................................................................................................................................27200.15303000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGCAT---------------------------------------------------------------------A--------------CTTCACCGTCGTGTCTGAC--G-C...........................................................................................................................................................................................................................................27200.10202000000000
..............................................................................................................................ACTCTACGAGTAACGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10200200000000
..................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAT---------------------------------------------------------------------A--------------CTTCACCGTCGTGTCTGA.................................................................................................................................................................................................................................................27200.10200000000002
...........................................................................................................................................................................................................................................................................................................................................................................................AACGAAACAATGCAT---------------------------------------------------------------------A--------------CTTCACCGT..........................................................................................................................................................................................................................................................25200.10202000000000
....................................................................................................................TTT-------ACTCTACGAGTAACGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
................................................................ACGCTTCCTTCTG---CCTGTTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGCAT---------------------------------------------------------------------A--------------CTTCACCGTCGTGTCTGAC--G-CC..........................................................................................................................................................................................................................................28200.05101000000000
.............................................................GAAACGCTTCCTTCTG---CCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
................................................................ACGCTTCCTTCTG---CCTGTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
........................................................................................ATACTTTTCAACGAATCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................ACGAAACAATGCAT---------------------------------------------------------------------A--------------CTTCACCGTCG........................................................................................................................................................................................................................................................26200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGCAT---------------------------------------------------------------------A--------------CTTCACCGTCGTGTCTGAC--G-............................................................................................................................................................................................................................................26200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................ACGAAACAATGCAT---------------------------------------------------------------------A--------------CTTCACCG...........................................................................................................................................................................................................................................................23200.05101000000000
..........TGATCCTGATCAAGAATA-----TATA--------TAC-TTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AACGAAACAATGCAT---------------------------------------------------------------------A--------------CTTCA..............................................................................................................................................................................................................................................................21200.05101000000000
droEre2
ATCGG-CAATTGATTCTGATCAAGAATA-----TATA--------TAC-TTTATATGGTCGGAAACGCTTCATTTTA---TATGTTACATACTTTTCAACGTATCT-------------------------ACAAGAATCGG-----A-----------------------------------------------------AAAT---------------------------------------------------------------------------------------------GTA------TC--------------------------------------------------------------------TTCATTT-------------------T-TATACATTTG--TTTCCTTTCTAGCGCC----------------CTTTCTAGCTTAATACATTGTACTA---------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 05:18 AM