ID:

dps_2673

 Coordinate:

XL_group1e:3769261-3769411 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.5 -7.0 -6.8

Flybase annnotation

CDS [Dpse\GA13266-cds]; exon [dpse_GLEANR_469:1]; intron [Dpse\GA13266-in]

No Repeatable elements found

Sense Strand Reads

-----------------------------------------#########---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTCGGACGAGTCAAAAATAGTTTTCTATAATGCTTCAATAATGATTTGGGTGAGTTTTTCCTACGATTTGGTTTGACCAGTATACTTATGGGCTGAAAATGTAACGGATTATCTTTTATAGGTTAAGACATTGATGGATATGATGGATGCTACCTTCTGGCCTCAAAAAAAATAGGCGAAACACACCAGTAAATCTGCCAATCAACTTTGGCAATCTTTGAAAAGATCCTACAGTTCGATTTCTGTAAAA
****************************************************************************************************************************.......((((.((....((.((......)).))...)))))).......................************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 SRR902010
ovaries
 M059
embryo
 M062
head
 GSM343916
embryo
.........................................................................................TGCGCCGAAAATGTAACGG............................................................................................................................................... 19 2 1 55.00 55 52 0 3 0 0 0 0
.........................................................................................TGCGCCGAAAATGTAACGGG.............................................................................................................................................. 20 3 5 19.60 98 72 0 26 0 0 0 0
............................................................................................................................TAAGACATTGATGGATATGATGGA....................................................................................................... 24 0 1 18.00 18 0 18 0 0 0 0 0
.......................................................................................................................TGGGTTAAGACATTGATGGATATGA........................................................................................................... 25 1 1 11.00 11 1 9 1 0 0 0 0
........................................................................................CTGCGCCGAAAATGTAACGG............................................................................................................................................... 20 3 6 9.33 56 56 0 0 0 0 0 0
............................................................................................................................TAAGACATTGATGGATATGATGGAT...................................................................................................... 25 0 1 8.00 8 0 6 2 0 0 0 0
.......................................................................................................................................TGGATATGATGGATGCTACCTTCTGG.......................................................................................... 26 0 1 6.00 6 0 6 0 0 0 0 0
...........................................................................................................................................TATGATGGATGCTACCTTCTGGCC........................................................................................ 24 0 1 5.00 5 1 4 0 0 0 0 0
..........................................................................................GCGCCGAAAATGTAACGG............................................................................................................................................... 18 2 3 4.33 13 13 0 0 0 0 0 0
.......................................................................................................................................TGGATATGATGGATGCTACCTTC............................................................................................. 23 0 1 4.00 4 3 1 0 0 0 0 0
..........................................................................................................................................................................................................TCAACTTTGGCAATCTTTGAAAAGATCC..................... 28 0 1 4.00 4 1 2 0 0 1 0 0
............CAAAAATAGTTTTCTATAATGCTTCAA.................................................................................................................................................................................................................... 27 0 1 4.00 4 0 0 0 4 0 0 0
............................................................................................................................TAAGACATTGATGGATATGATGGATG..................................................................................................... 26 0 1 3.00 3 1 1 1 0 0 0 0
.........................................................................................TGCGCCGAAAATGTACCGG............................................................................................................................................... 19 3 11 3.00 33 33 0 0 0 0 0 0
................................................................................................................................................................................................................TTGGCAATCTTTGAAAAGATCCTACAG................ 27 0 1 3.00 3 0 3 0 0 0 0 0
..................TAGTTTTCTATAATGCTTCAATAA................................................................................................................................................................................................................. 24 0 1 3.00 3 0 3 0 0 0 0 0
.....................................................................................................................TTTGGGTTAAGACATTGATGGATA.............................................................................................................. 24 2 1 3.00 3 0 2 1 0 0 0 0
...................................................................................................................................................................TCAAAAAAAATAGGCGAAACACACCAG............................................................. 27 0 1 3.00 3 0 3 0 0 0 0 0
............................................................................................................................................................TCTGGCCTCAAAAAAAATAGGCGAAAC.................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0
..TCGGACGAGTCAAAAATAGTTTTCTAGT............................................................................................................................................................................................................................. 28 2 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................................................................TGGATATGATGGATGCTACCT............................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0
.............................................................................................................................................TGATGGATGCTACCTTCTGGCCTCAAA................................................................................... 27 0 1 2.00 2 0 0 0 2 0 0 0
......................................................................................................................TTGGGTTAAGACATTGATGGATATGA........................................................................................................... 26 2 1 2.00 2 0 0 2 0 0 0 0
........................TCTATAATGCTTCAATAATGATTTGGGT....................................................................................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................................................TGGGTTAAGACATTGATGGATATG............................................................................................................ 24 1 1 2.00 2 0 2 0 0 0 0 0
.........................................................................................TGCGCCGAAAATGTAACG................................................................................................................................................ 18 2 2 1.50 3 3 0 0 0 0 0 0
.................................................................................................................................CATTGATGGATATGATGGATGCTAC................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................AAGACATTGATGGATATGATGGATGC.................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................TTTGAAAAGATCCTACAGTTCGATT......... 25 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................TGGGTTAAGACATTGATGGATATGATG......................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................................................TTAAGACATTGATGGATATGATGGA....................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................GGATATGATGGATGCTACCTTCTGGCC........................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................TGGATATGATGGATGCTACCTTCTGGCC........................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................TGGATATGATGGATGCTACCTTCTG........................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................TGATGGATATGATGGATGCTACCTTC............................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................CATTGATGGATATGATGGATGC.................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................TGGATATGATGGATGCTACCTTCTGGC......................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................TTGGGTTAAGACATTGATGGATC.............................................................................................................. 23 3 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................TTTGGGTTAAGACATTGATGGATATGA........................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................TTGGGTTAAGACATTGATGGATA.............................................................................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0
........................TCTATAATGCTTCAATAATG............................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................TCTGGCCTCAAATCAAGTAGG.......................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................................................................................TCAAAAAAATAGGCGAAACACACCAG............................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0
..TCGGACGAGTCAAAAATAGTTT................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................CAACTTTGGCAATCTTTGAAAAGATCC..................... 27 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................TAAGACATTGATGGATATGATGGATGC.................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................................................CCTTCTGGCCTCAGAAAAAATAGGCG........................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................TTGATGGATATGATGGATGCTACCTTCTGAG......................................................................................... 31 2 1 1.00 1 0 1 0 0 0 0 0
........................................................................................CTGCGCCGAAAATGTAACG................................................................................................................................................ 19 3 20 0.65 13 12 0 1 0 0 0 0
.....................................................................................................................TTTGGGTTAAGACATTGATGGATAA............................................................................................................. 25 3 2 0.50 1 0 0 1 0 0 0 0
........................................................................................CTGCGCCGAAAATGTAACGGA.............................................................................................................................................. 21 3 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................TAAGGATTGAAAATGTAACGG............................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................................................AAAAAAATAGGGGTACCACACC............................................................... 22 3 3 0.33 1 0 0 0 0 1 0 0
.......................................................................................................................................................TATCGTCTGGCCTGAAAAAAA............................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0
........................................................................................ATGCGCCGAAAATGTACCGG............................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................CAGTTCGATTTCGGGAAAA 19 2 4 0.25 1 1 0 0 0 0 0 0
....................................................GATTTTTTCCAAGGATTTGGTT................................................................................................................................................................................. 22 3 5 0.20 1 0 0 0 0 0 1 0
.........................................................................................TGCGCCGAAAATGTAACGGC.............................................................................................................................................. 20 3 6 0.17 1 0 0 1 0 0 0 0
..................................................................................ATACTTGTGGGGTGAAAACG..................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1
..TCGGACGAGGCAAAAAAA....................................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 1 0 0 0
.........................................................................................TGCGCCGAAAATGTGACGG............................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0
..........................................................GTCTTTCGATTTGGTTTGACC............................................................................................................................................................................ 21 3 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

CCAGCCTGCTCAGTTTTTATCAAAAGATATTACGAAGTTATTACTAAACCCACTCAAAAAGGATGCTAAACCAAACTGGTCATATGAATACCCGACTTTTACATTGCCTAATAGAAAATATCCAATTCTGTAACTACCTATACTACCTACGATGGAAGACCGGAGTTTTTTTTATCCGCTTTGTGTGGTCATTTAGACGGTTAGTTGAAACCGTTAGAAACTTTTCTAGGATGTCAAGCTAAAGACATTTT
*************************************************************.......((((.((....((.((......)).))...)))))).......................**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M022
male body		 V112
male body		 M040
female body
 GSM444067
head
 SRR902011
testis
 GSM343916
embryo
 M062
head
................................................................................................................................................................................................................................GCTAGGATGTCGAGCTAAA........ 19 2 3 9.33 28 17 10 1 0 0 0 0
..............................................................................................................................................................................................................................TCGCTAGGATGTCGAGCTAAA........ 21 3 2 2.50 5 2 3 0 0 0 0 0
..............................................................................................................................................................................................................................TCGCTAGGATGTCGAGCTAA......... 20 3 7 1.00 7 1 4 1 1 0 0 0
.................................................................................................................................................................................................................................CTAGGATGTCGAGCTAAAC....... 19 2 1 1.00 1 0 0 0 1 0 0 0
................................................................................................................................................................................................................................TCTAGGATGTCGAGCTAAA........ 19 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GCTAGGATGTCGAGCTAAAC....... 20 3 6 0.83 5 2 3 0 0 0 0 0
...................................................................................................................................................................................................................CGTCTGAAATTTTTCTAGGAT................... 21 3 2 0.50 1 0 0 0 1 0 0 0
.................................................................................................................................................................GGAGATTTTTCGATCCGCTTT..................................................................... 21 3 4 0.50 2 0 0 2 0 0 0 0
...............................................................................................................................................................................................................................TGCTAGGATGTCGAGCTAAA........ 20 2 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GCTAGGATGTCGAGCTAA......... 18 2 6 0.50 3 2 0 1 0 0 0 0
..............................................................................................................................................................................................................................GTGCTAGGATGTCGAGCTAAA........ 21 3 2 0.50 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................CGCTAGGATGTCGAGCTAAA........ 20 3 8 0.38 3 0 1 0 2 0 0 0
.................................................................................................................................................................................................................................CTAGTATGTCGAGCTAAAC....... 19 3 20 0.35 7 0 0 0 0 7 0 0
...............................................................................................................................................................................................................................TGCTAGGATGTCGAGCTAA......... 19 2 3 0.33 1 0 0 1 0 0 0 0
................................................................................................................................................................................................................................TCTAGTATGTCGAGCTAAA........ 19 2 3 0.33 1 0 0 0 0 1 0 0
....................................................................................................................................................................................TTGTGTGGTCGGTTAGACTGT.................................................. 21 3 3 0.33 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................TGCTAGGATGTCGAGCTAAAC....... 21 3 3 0.33 1 0 0 0 0 0 0 1
...........................................................................................................................................................ATGATCGGAGTTTTTTTTA............................................................................. 19 2 4 0.25 1 0 0 1 0 0 0 0
.........................................................................................ACGCGGCTTTTACATTGCCC.............................................................................................................................................. 20 3 5 0.20 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................................CTTGTCTAGGATGTGAAGC............ 19 2 9 0.11 1 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................CTAGTATGTCGAGCTAAA........ 18 2 14 0.07 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................AGACGGTTAGTTAAACGCGT..................................... 20 3 16 0.06 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................CGCTAGGATGTCGAGCTAA......... 19 3 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:3769211-3769461 - dps_2673 GGTCGGACGAGTCAAAAATAGTTTTCTATAATG---------------------------------------------------------------------------------------CTTCAATAATGATTTGGGTGAGTTTTTCCTACGATTTGGTTTGACCAGTATACTTATGGGCTGAAAATGTAACGGATTATCTTTTATAGGTTAAGACATTGATGGATATGATGG--------------------ATGCTACCTTCTGG--C-C----TCAAAAAAAATAGGCGAAACACACCAGTAAATCTGCCAATCAACTTTGGCAATCTTTGAAAAGATCCTACAGTTCGATTTCTGTAAAA
droPer2 scaffold_17:702558-702798 - GGTCGGACGAGTCAAAAATTGTTTTCTGTAATG-------------------------------------------------------------------------------------CTTATCAATAATGATTTGGGTGAGTTTTTA-T-ATATAAAA-------TATATAAA---GTATATAAAATGTAATAGATTATCTTTTATAGGTTAAGACAGTGATGGATATGATGG--------------------ATGCTACCTTCTGG--C-C----TCGGAAAAAATAGGCGAAACACACCAGCAAATCTGCCAATCAACTTTGGCAAACTTTGAGAAGATCCTACAGTTCGATTTCTGTAAAG
droBip1 scf7180000396519:31748-32060 + GGTCGGATGAGTCCAAAATTGTTTTGTTTGGTGGCTGTGGTTCTCGACAATATGTTCGACGACCACCTCTGACCGCATATGCTCCACAACATACTTGCCAAATGGTCAAACACGGCGGGTTATCAATTATGATTTGGGCGAGTTTTTCCTACCATGGTGTTGGGCCCATATATT---GGATCAAAACTATTATGGATTGGCATCTTTATGTAAAAATCTTAAGCGAGGTGATGCTTCCATATGCCTCAGAGGAGATGCCACTTATTTGGACGTTTCAACAGGACAACGATCCGAAACACACTAGTAAGGTGACCAA-------------------------------------------------
droRho1 scf7180000780170:25316-25506 - --------------------------------------------------------------------------------------------------------------------------TCAATTATGATTTGGGCAAGCTTTTCATACTATGGAGTTGGGCCAGTATATT---GGATCAAAACTATCATGGACCGTTATTTATATGTCAAAATTTTAAACGAAGTGATGCTTCCATATGCTGCCGAGGACATGCCACTTGTTTGGACGTTCCAACAGGACAACGATCCCAAACATACGAGTAAACTCGCCAA-------------------------------------------------
droYak3 v2_chr3L_random_018:20352-20537 - --------------------------------------------------------------------------------------------------------------------------TCAATTATGATTTGGGCGAGTTTTTCGTATTATGGAGTTGGACCCGTGTATT---GCGTCAAGAACATCATGGATCGTTTTTTATATGTTAAAATTTTAAACGAGGTGATGCTCCCATATGCCTCC-----CATGCCACTTGTTTGGACTTTCCAATAGGATAATGATCCAAAACATACTAGTAAACTCGCGAA-------------------------------------------------
droEre2 scaffold_4929:22878954-22879265 - GGTCGGATGAGTCCAAGATAGTTTAGTTTGGAGGCCATGGCTCTCGGCAGTTTGTTAGACGACCACCCTTATGTGCTTTCTTTCCGAAATATACCTTAAGAACGGTTAGGCGCGGTGGTTCATCGATTATGATTTGGGCGAGTTTTTCGTAATATGGGGTTGGACAAGTATATT---GGATCAAAAACA-CATGGACCGTTATTTATATCTCAAAATTTTAAACGACGTGATGCTCCCATATGCCTCCGAGGACATGCCACTTGTTTTGACGTTCCAACAGGACAATGAACCAAAGCATACAAGTAAACTCGCCAA-------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGTCGGACGAGTCAAAAATAGTTTTCTATAATG---------------------------------------------------------------------------------------CTTCAATAATGATTTGGGTGAGTTTTTCCTACGATTTGGTTTGACCAGTATACTTATGGGCTGAAAATGTAACGGATTATCTTTTATAGGTTAAGACATTGATGGATATGATGG--------------------ATGCTACCTTCTGG--C-C----TCAAAAAAAATAGGCGAAACACACCAGTAAATCTGCCAATCAACTTTGGCAATCTTTGAAAAGATCCTACAGTTCGATTTCTGTAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................TAAGACATTGATGGATATGATGG--------------------A..............................................................................................................24118.001800000000180
...................................................................................................................................................................................................................TAAGACATTGATGGATATGATGG--------------------AT.............................................................................................................2518.0080000002060
..............................................................................................................................................................................................................................TGGATATGATGG--------------------ATGCTACCTTCTGG--...............................................................................................2616.0060000000060
..................................................................................................................................................................................................................................TATGATGG--------------------ATGCTACCTTCTGG--C-C----........................................................................................2415.0050100000040
..............................................................................................................................................................................................................................TGGATATGATGG--------------------ATGCTACCTTC....................................................................................................2314.0040300000010
............................................................................................................................................................................................................................................................................................................................TCAACTTTGGCAATCTTTGAAAAGATCC.....................2814.0040110000020
............CAAAAATAGTTTTCTATAATG---------------------------------------------------------------------------------------CTTCAA...............................................................................................................................................................................................................................................2714.0040000000400
...................................................................................................................................................................................................................TAAGACATTGATGGATATGATGG--------------------ATG............................................................................................................2613.0030100001010
..................................................................................................................................................................................................................................................................................................................................TTGGCAATCTTTGAAAAGATCCTACAG................2713.0030000000030
..................TAGTTTTCTATAATG---------------------------------------------------------------------------------------CTTCAATAA............................................................................................................................................................................................................................................2413.0030000000030
.....................................................................................................................................................................................................................................................................................TCAAAAAAAATAGGCGAAACACACCAG.............................................................2713.0030000000030
.......................................................................................................................................................................................................................................................................TCTGG--C-C----TCAAAAAAAATAGGCGAAAC....................................................................2712.0020000000020
..TCGGACGAGTCAAAAATAGTTTTCTAGT...............................................................................................................................................................................................................................................................................................................................................2812.0020000000020
..............................................................................................................................................................................................................................TGGATATGATGG--------------------ATGCTACCT......................................................................................................2112.0020000000020
....................................................................................................................................................................................................................................TGATGG--------------------ATGCTACCTTCTGG--C-C----TCAAA...................................................................................2712.0020000000200
........................TCTATAATG---------------------------------------------------------------------------------------CTTCAATAATGATTTGGGT..................................................................................................................................................................................................................................2812.0020000000020
........................................................................................................................................................................................................................CATTGATGGATATGATGG--------------------ATGCTAC........................................................................................................2511.0010000000010
....................................................................................................................................................................................................................AAGACATTGATGGATATGATGG--------------------ATGC...........................................................................................................2611.0010000000010
...........................................................................................................................................................................................................................................................................................................................................TTTGAAAAGATCCTACAGTTCGATT.........2511.0010000000010
..................................................................................................................................................................................................................TTAAGACATTGATGGATATGATGG--------------------A..............................................................................................................2511.0010000000010
...............................................................................................................................................................................................................................GGATATGATGG--------------------ATGCTACCTTCTGG--C-C----........................................................................................2711.0010100000000
..............................................................................................................................................................................................................................TGGATATGATGG--------------------ATGCTACCTTCTGG--C-C----........................................................................................2811.0010000000010
..............................................................................................................................................................................................................................TGGATATGATGG--------------------ATGCTACCTTCTG..................................................................................................2511.0010000000010
...........................................................................................................................................................................................................................TGATGGATATGATGG--------------------ATGCTACCTTC....................................................................................................2611.0010000000010
........................................................................................................................................................................................................................CATTGATGGATATGATGG--------------------ATGC...........................................................................................................2211.0010000000010
..............................................................................................................................................................................................................................TGGATATGATGG--------------------ATGCTACCTTCTGG--C-.............................................................................................2711.0010100000000
........................TCTATAATG---------------------------------------------------------------------------------------CTTCAATAATG..........................................................................................................................................................................................................................................2011.0010000000010
..TCGGACGAGTCAAAAATAGTTT.....................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
.............................................................................................................................................................................................................................................................................................................................CAACTTTGGCAATCTTTGAAAAGATCC.....................2711.0010000000010
...................................................................................................................................................................................................................TAAGACATTGATGGATATGATGG--------------------ATGC...........................................................................................................2711.0010000000100
..........................................................................................................................................................................................................................TTGATGGATATGATGG--------------------ATGCTACCTTCTGA--G-.............................................................................................3111.0010000000010
droPer2
GGTCGGACGAGTCAAAAATTGTTTTCTGTAATG-------------------------------------------------------------------------------------CTTATCAATAATGATTTGGGTGAGTTTTTA-T-ATATAAAA-------TATATAAA---GTATATAAAATGTAATAGATTATCTTTTATAGGTTAAGACAGTGATGGATATGATGG--------------------ATGCTACCTTCTGG--C-C----TCGGAAAAAATAGGCGAAACACACCAGCAAATCTGCCAATCAACTTTGGCAAACTTTGAGAAGATCCTACAGTTCGATTTCTGTAAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................TAAGACAGTGATGGATATGATGG--------------------ATGC...........................................................................................................27117.00170100016
...................................................................................................................................................................................................................TAAGACAGTGATGGATATGATGG--------------------A..............................................................................................................24114.00140100013
...................................................................................................................................................................................................................TAAGACAGTGATGGATATGATGG--------------------AT.............................................................................................................25110.00100000010
...................................................................................................................................................................................................................TAAGACAGTGATGGATATGATGG--------------------ATG............................................................................................................2619.009000009
..................................................................................................................................................................................................................TTAAGACAGTGATGGATATGATGG--------------------A..............................................................................................................2512.002000002
..................................................................................................................................................................................................................TTAAGACAGTGATGGATATGATGG--------------------ATGC...........................................................................................................2812.002000002
................................................................................................................................................................................................................GGTTAAGACAGTGATGGATATGATGG--------------------AA.............................................................................................................2812.002000002
..............................................................................................................................................................................................................TAGGTTAAGACAGTGATGGATATGA......................................................................................................................................2512.002000002
..................................................................................................................................................................................................................................TATGATGG--------------------ATGCTACCTTCTGG--C-C----........................................................................................2412.002020000
...........................................................................................................................................................................................................................TGATGGATATGATGG--------------------ATGCTACCTTC....................................................................................................2612.002020000
.................................................................................................................................................................................................................GTTAAGACAGTGATGGATATGATGG--------------------A..............................................................................................................2612.002000002
.............................................................................................................................................................................................................................................................................................................................................TGAGAAGATCCTACAGTTCGATT.........2312.002000002
..............................................................................................................................................................................................................................TGGATATGATGG--------------------ATGCTACCTTC....................................................................................................2311.001010000
...................................................................................................................................................................................................................TAAGACAGTGATGGATATGATGG--------------------ATC............................................................................................................2611.001000001
........................................................................................................................................................................................................................................................................................................CACACCAGCAAATCTGCCAATCAACTT..........................................2711.001010000
..........................................................................................................................................................................................................................................................................................................................................CTTTGAGAAGATCCTACAGTTCGATT.........2611.001000001
..................................................................................................................................................................................................................TTAAGACAGTGATGGATATGATGG--------------------AT.............................................................................................................2611.001000001
.........................................................................................................................................................................................................................................G--------------------ATGCTACCTTCTGG--C-C----TCGGAAAAAA..............................................................................2711.001010000
..............................................................................................................................................................................................................................TGGATATGATGG--------------------ATGCTACCTTCTGG--C-.............................................................................................2711.001010000
...............................................................................................................................................................................................................................................................................................................GCAAATCTGCCAATCAACTTTGG.......................................2311.001010000
.........AGTCAAAAATTGTTTTCTGTAATG-------------------------------------------------------------------------------------C......................................................................................................................................................................................................................................................2511.001010000
...................................................................................................................................................................................................................TAAGACAGTGATGGATATGATGG--------------------AA.............................................................................................................2511.001000001
....................................................................................................................................................................................................................AAGACAGTGATGGATATGATGG--------------------ATGC...........................................................................................................2611.001000001
.......CGAGTCAAAAATTGTTTTCTGTAATG-------------------------------------------------------------------------------------CT.....................................................................................................................................................................................................................................................2811.001000001
...........................................................................................................................................................................................................................TGATGGATATGATGG--------------------ATGCTACCT......................................................................................................2411.001010000
..................................................................................................................................................................................................................................TATGATGG--------------------ATGCTACCTTCTGG--C-C----T.......................................................................................2511.001010000
droBip1
GGTCGGATGAGTCCAAAATTGTTTTGTTTGGTGGCTGTGGTTCTCGACAATATGTTCGACGACCACCTCTGACCGCATATGCTCCACAACATACTTGCCAAATGGTCAAACACGGCGGGTTATCAATTATGATTTGGGCGAGTTTTTCCTACCATGGTGTTGGGCCCATATATT---GGATCAAAACTATTATGGATTGGCATCTTTATGTAAAAATCTTAAGCGAGGTGATGCTTCCATATGCCTCAGAGGAGATGCCACTTATTTGGACGTTTCAACAGGACAACGATCCGAAACACACTAGTAAGGTGACCAA-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
--------------------------------------------------------------------------------------------------------------------------TCAATTATGATTTGGGCAAGCTTTTCATACTATGGAGTTGGGCCAGTATATT---GGATCAAAACTATCATGGACCGTTATTTATATGTCAAAATTTTAAACGAAGTGATGCTTCCATATGCTGCCGAGGACATGCCACTTGTTTGGACGTTCCAACAGGACAACGATCCCAAACATACGAGTAAACTCGCCAA-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
--------------------------------------------------------------------------------------------------------------------------TCAATTATGATTTGGGCGAGTTTTTCGTATTATGGAGTTGGACCCGTGTATT---GCGTCAAGAACATCATGGATCGTTTTTTATATGTTAAAATTTTAAACGAGGTGATGCTCCCATATGCCTCC-----CATGCCACTTGTTTGGACTTTCCAATAGGATAATGATCCAAAACATACTAGTAAACTCGCGAA-------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................TCCCATATGCCTCC-----CATGCCACTTG.....................................................................................................2513.00303000000000
................................................................................................................................................TTTCGTATTATGGAGTTGGACCCGTG...................................................................................................................................................................................................2621.50303000000000
.......................................................................................................................................................................................................................................TGCTCCCATATGCCTCC-----CATGCCA.........................................................................................................2411.00101000000000
................................................................................................................................................TTTCGTATTATGGAGTTGGACCC......................................................................................................................................................................................................2321.00201100000000
................................................................................................................................................TTTCGTATTATGGAGTTGGACC.......................................................................................................................................................................................................2231.00301100010000
..........................................................................................................................................................................TATT---GCGTCAAGAACATCATGGATCGTT....................................................................................................................................................................2811.00101000000000
..................................................................................................................................................................................................................................................................................................CCAAAACATACTAGTAAACTCGCGA..................................................2521.00202000000000
................................................................................................................................................TTTCGTATTATGGAGTTGGACCCGT....................................................................................................................................................................................................2521.00201100000000
.........................................................................................................................................................................................................................................................................TTGGACTTTCCAATAGGATAATGATC..........................................................................2611.00101000000000
...................................................................................................................................................................................................................TAAAATTTTAAACGAGGTGATGCTCCCA..............................................................................................................................2820.50101000000000
..................................................................................................................................................................................................................................................................................................CCAAAACATACTAGTAAACTCGCG...................................................2420.50101000000000
..................................................................................................................................................................................................................................................................................................CCAAAACATACTAGTAAACTCGCGAT-------------------------------------------------2620.50101000000000
................................................................................................................................................TTTCGTATTATGGAGTTGGACCCT.....................................................................................................................................................................................................2420.50101000000000
..................................................................................................................................................................................................................................................................................................CCAAAACATACTAGTAAACTCGCGAA-------------------------------------------------2620.50101000000000
.................................................................................................................................................TTCGTATTATGGAGTTGGACC.......................................................................................................................................................................................................2130.33101000000000
droEre2
GGTCGGATGAGTCCAAGATAGTTTAGTTTGGAGGCCATGGCTCTCGGCAGTTTGTTAGACGACCACCCTTATGTGCTTTCTTTCCGAAATATACCTTAAGAACGGTTAGGCGCGGTGGTTCATCGATTATGATTTGGGCGAGTTTTTCGTAATATGGGGTTGGACAAGTATATT---GGATCAAAAACA-CATGGACCGTTATTTATATCTCAAAATTTTAAACGACGTGATGCTCCCATATGCCTCCGAGGACATGCCACTTGTTTTGACGTTCCAACAGGACAATGAACCAAAGCATACAAGTAAACTCGCCAA-------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................CTCGGCAGTTTGTTAGACGACCACCCT........................................................................................................................................................................................................................................................................................................2711.0011000000
.................................................................................................................................................................................................................................................................CCACTTGTTTTGACGTTCCAACAG....................................................................................2411.0011000000
.......................................................................................................................................................................................................................................TGCTCCCATATGCCTCCGAGGACA..............................................................................................................2420.5011000000

Generated: 05/18/2015 at 05:12 AM