ID:

dps_2656

 Coordinate:

XL_group1e:3219797-3219947 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.5 -19.2 -19.2

Flybase annnotation

CDS [Dpse\GA28702-cds]; exon [dpse_GLEANR_881:2]; intron [Dpse\GA28702-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGTCCCTGACCCCTTTATCTGGCCGCAGTAGTCAAGCCAGAGGCCGACCTGTAAGCCGACGCGATAGCCAAAACCGGGGACCGGCTCCAACCAGAAGCCGATCTCCACTCCGGCGCAATCCTATACCTTCCAACACCATCGATACCGAGACAGACAGCAGAAAGGATTTCTTAAAATCGCAATGTAAAACAATGTAGTGATTTTCAAACTAAATTCATTAGACAATATTATCAAACAATATAAAACATGAA
*********************************************************.........(((......(((((.((((((......)).)))).))))).....)))........................(((....)))................*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 GSM444067
head
 M022
male body		 SRR902010
ovaries
 V112
male body		 GSM343916
embryo
 M059
embryo
...............................................................................................................................................ACCGAGACAGACAGCAGAAAG....................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0
.........................................................GACGCGATAGCCAAAACCG............................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................................ATACCGAGACAGACAGCAGAA......................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
................................CAAGCCAGAGGCCGACCTG........................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................................AGACAGACAGCAGAAAGGATT................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................CGAGACAGACAGCAGAAAGG...................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................GGCCGACCTGTAAGCCGACGCGATAG........................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................GGGACCGGCTCCAACCAGAAG.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................CCGATCTCCACTCCGGCGCA...................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................CGATACCGAGACAGACAGCAG........................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................AAAACAATGTAGTGATTTTCA............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TAAAATCGCAATGTAAAAC............................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................CGCAGTAGTCAAGCCAGAGGC............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
.................................................................................................................................................CGAGACAGACAGCAGAAAGGA..................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................TTCCACCACGACCGATACCG........................................................................................................ 20 3 3 0.33 1 0 0 0 0 0 1 0 0
......................................AGAGGCCGATCTGTTGGCCGA................................................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................ATAGCAATGTAGAACAATCT........................................................ 20 3 9 0.11 1 0 0 0 0 0 0 0 1
..............................................................................................................................................................TGAAAGGATTTCTGAAAATGG........................................................................ 21 3 11 0.09 1 0 0 1 0 0 0 0 0
.....................GCAGTACTAGTCAAGCCAG................................................................................................................................................................................................................... 19 3 14 0.07 1 0 1 0 0 0 0 0 0
.....................................CAAAGGCCGATCTGTAAGA................................................................................................................................................................................................... 19 3 19 0.05 1 0 1 0 0 0 0 0 0
.............................................................................................GAAGACGATCTGCACTCCC........................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TCAGGGACTGGGGAAATAGACCGGCGTCATCAGTTCGGTCTCCGGCTGGACATTCGGCTGCGCTATCGGTTTTGGCCCCTGGCCGAGGTTGGTCTTCGGCTAGAGGTGAGGCCGCGTTAGGATATGGAAGGTTGTGGTAGCTATGGCTCTGTCTGTCGTCTTTCCTAAAGAATTTTAGCGTTACATTTTGTTACATCACTAAAAGTTTGATTTAAGTAATCTGTTATAATAGTTTGTTATATTTTGTACTT
***************************************************************************************.........(((......(((((.((((((......)).)))).))))).....)))........................(((....)))................********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 GSM444067
head
 M040
female body
.........................................................................................................................................TAGCTATGGCTCTGTCTGTCG............................................................................................. 21 0 1 3.00 3 3 0 0 0
...............................................................................................................................................TGGCTCTGTCTGTCGTCTTT........................................................................................ 20 0 1 3.00 3 3 0 0 0
.......................................................................................................................GGATATGGAAGGTTGTGGTAGC.............................................................................................................. 22 0 1 2.00 2 2 0 0 0
.......................................................GGCTGCGCTATCGGTTTTGG................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0
..................................................................................................GCTAGAGGTGAGGCCGCGTT..................................................................................................................................... 20 0 1 2.00 2 2 0 0 0
.................................................................................................GGCTAGAGGTGAGGCCGCGTT..................................................................................................................................... 21 0 1 2.00 2 1 1 0 0
...............................................GGACATTCGGCTGCGCTATC........................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
.............................................CTGGACATTCGGCTGCGCTATC........................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0
..................................................................................................GCTAGAGGTGAGGCCGCGTTA.................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
...........................................................................................................................ATGGAAGGTTGTGGTAGCTA............................................................................................................ 20 0 1 1.00 1 1 0 0 0
.......................................................................................................................GGATATGGAAGGTTGTGGTAG............................................................................................................... 21 0 1 1.00 1 1 0 0 0
....................................GGTCTCCGGCTGGACATTCGG.................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0
.............................................................................CCTGGCCGAGGTTGGTCTTC.......................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0
..................................................CATTCGGCTGCGCTATCGGT..................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
................................................................................................................................................GGCTCTGTCTGTCGTCTTTC....................................................................................... 20 0 1 1.00 1 1 0 0 0
........................................................................................TTGGTCTTCGGGAAGAGGTG............................................................................................................................................... 20 2 2 0.50 1 0 0 1 0
........TGGGTAAATGGACCGGCGTAAT............................................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 1 0
................................................................................................CGACAAGAGGTGAGGCCGC........................................................................................................................................ 19 2 3 0.33 1 0 0 0 1
.........................................................CTGCGCGATTGGTTCTGGC............................................................................................................................................................................... 19 3 7 0.29 2 0 1 0 1
.........................................................CTGCGCGATTGGTTCTGG................................................................................................................................................................................ 18 3 20 0.10 2 0 0 0 2

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:3219747-3219997 + dps_2656 AGTCCCTGACCCCTTTATCTGGCCGCAGTAGTCAAGCCAGAGGCCGACCTGTAAGCCGACGCGATAGCCAAAACCGGGGACCGGCTCCAACCAGAAGCCGATCTCCACTCCGGCGCAATCCTATACCTTCCAACACCATCGATACCGAGACAGACAGCAGAAAGGATTTCTTAAAATCGCAATGTAAAACAATGTAGTGATTTTCAAACTAAATTCATTAGACAATATTATCAAACAATATAAAACATGAA
droPer2 scaffold_17:154839-155089 + AGTCCCTGACCCCTTTATCTGACCGCAGTAGTCAAGCCAGAGGCCGACCTGTAAGCCGACGCGATAGCCAACACCGGGGCCCGGCTCCAACCAGAAGCCGATCTCCAATCCGGCGCAATCCTATACCTTCCAACACCATCGATACCGAGACAGACAGCAGAAAGGATTTCTTGAAATCGCAATGTAAAACAATGTAGTGATTTTCAAACTAAATTCATTAGACAATATTATCAAACAATATAAAACATGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AGTCCCTGACCCCTTTATCTGGCCGCAGTAGTCAAGCCAGAGGCCGACCTGTAAGCCGACGCGATAGCCAAAACCGGGGACCGGCTCCAACCAGAAGCCGATCTCCACTCCGGCGCAATCCTATACCTTCCAACACCATCGATACCGAGACAGACAGCAGAAAGGATTTCTTAAAATCGCAATGTAAAACAATGTAGTGATTTTCAAACTAAATTCATTAGACAATATTATCAAACAATATAAAACATGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................ACCGAGACAGACAGCAGAAAG.......................................................................................2114.0040000000040
.........................................................GACGCGATAGCCAAAACCG...............................................................................................................................................................................1912.0020000000020
.............................................................................................................................................ATACCGAGACAGACAGCAGAA.........................................................................................2112.0020000000020
................................CAAGCCAGAGGCCGACCTG........................................................................................................................................................................................................1911.0010000010000
...................................................................................................................................................AGACAGACAGCAGAAAGGATT...................................................................................2111.0010000000010
.................................................................................................................................................CGAGACAGACAGCAGAAAGG......................................................................................2011.0010000000010
.........................................GGCCGACCTGTAAGCCGACGCGATAG........................................................................................................................................................................................2611.0011000000000
............................................................................GGGACCGGCTCCAACCAGAAG..........................................................................................................................................................2111.0010000000010
.................................................................................................CCGATCTCCACTCCGGCGCA......................................................................................................................................2011.0010100000000
...........................................................................................................................................CGATACCGAGACAGACAGCAG...........................................................................................2111.0010000000010
.........................................................................................................................................................................................AAAACAATGTAGTGATTTTCA.............................................2111.0010000000010
...........................................................................................................................................................................TAAAATCGCAATGTAAAAC.............................................................1911.0010000000010
.......................CGCAGTAGTCAAGCCAGAGGC...............................................................................................................................................................................................................2111.0010000000100
.................................................................................................................................................CGAGACAGACAGCAGAAAGGA.....................................................................................2111.0010000000010
droPer2
AGTCCCTGACCCCTTTATCTGACCGCAGTAGTCAAGCCAGAGGCCGACCTGTAAGCCGACGCGATAGCCAACACCGGGGCCCGGCTCCAACCAGAAGCCGATCTCCAATCCGGCGCAATCCTATACCTTCCAACACCATCGATACCGAGACAGACAGCAGAAAGGATTTCTTGAAATCGCAATGTAAAACAATGTAGTGATTTTCAAACTAAATTCATTAGACAATATTATCAAACAATATAAAACATGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 05:09 AM