ID:

dps_2646

 Coordinate:

XL_group1e:2791095-2791214 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.0 -19.9 -19.9

Flybase annnotation

CDS [Dpse\GA21972-cds]; CDS [Dpse\GA21972-cds]; exon [dpse_GLEANR_517:1]; exon [dpse_GLEANR_517:2]; intron [Dpse\GA21972-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------##################################################
TCCTCCGCTGCCCTTAACGCAGCCCCCATCGCTGAGTGGCGGCGGGGTTGGTGGGGTCTCTGGCAGCGCCATCAGCAGCAGCAGTGGAAGCAGCAGCATAGTGGCCAATGCCATTAGCAGCCTCAATGGCAACAACAGTGCCACCAGCAGCAGCAGTTGCATTCAACCAGCCAACAACAACAACAACAATCACAACAACAACATCAGCAACATCAGCAGC
***********************************************************************.........((..(((.....((.((.(((((((....))))))))).)).....(((((.......))))))))))..********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 M062
head
 GSM444067
head
 V112
male body		 GSM343916
embryo
 SRR902012
CNS imaginal disc
.....................................................................CTTCAGCAGCAGCAGTGGAAG.................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TCAGCAGCAGCAGTGGAAG.................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................CTCTGGCAGCGCCATCAGC................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................ATCACAACAACAACATCAGCAACATCAGC... 29 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................CAACAACAGTGCCACCAGCAG...................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................................CACCAGCAGCAGCAGTTGC............................................................ 19 0 2 1.00 2 2 0 0 0 0 0 0
.....................................GGCGGCGGGGTTGGTGGGGT................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TCAGCAGCAGCAGTGGAA................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................CAGTGCCACCAGCAGCAGCAGTTGCAT.......................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................CTTCAGCAGCAGCAGTGGAA................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................ACAACAACAACATCAGCAACA........ 21 0 6 0.83 5 3 0 1 0 1 0 0
.....................................................................CTTCAGCAGCAGCAGTGGA.................................................................................................................................... 19 1 4 0.50 2 2 0 0 0 0 0 0
................................................................................................................................................................................................CAACAACAACATCAGCAACA........ 20 0 8 0.38 3 2 0 0 1 0 0 0
.............................................................................GCAGCAGTGGAAGCAGCAGC........................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
.......................................................................TCAGCAGTAGCAGTGGAA................................................................................................................................... 18 1 4 0.25 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................ACAACAACAACATCAGCAA.......... 19 0 7 0.14 1 0 0 1 0 0 0 0
..........................................................................GCAGCAGCAGTGGAAGCA................................................................................................................................ 18 0 7 0.14 1 1 0 0 0 0 0 0
................................................................................................................................................................................................CAACAACAACATCAGCAAC......... 19 0 9 0.11 1 1 0 0 0 0 0 0
...............................................................................................................................................................................AACCTGAACAACAATCACAACAA...................... 23 3 11 0.09 1 1 0 0 0 0 0 0
.............................CGCTTAGTGGCGGACGGGT............................................................................................................................................................................ 19 3 11 0.09 1 1 0 0 0 0 0 0
...........................................................................................................................................GCCCCCAGCAGCGGCAGTT.............................................................. 19 2 12 0.08 1 1 0 0 0 0 0 0
.............................................................................................................................................CTCCAGCAGCAGAAGTTCCATT......................................................... 22 3 13 0.08 1 0 0 1 0 0 0 0
.......................................................................................................................................CAGTCCCACCAGCAGCAGCAG................................................................ 21 1 19 0.05 1 0 0 0 0 0 1 0
.......................................TGGCGGGGTTGGTGG...................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1
...............................................................CAGCGCCATCAGCGGCAACAG........................................................................................................................................ 21 2 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

AGGAGGCGACGGGAATTGCGTCGGGGGTAGCGACTCACCGCCGCCCCAACCACCCCAGAGACCGTCGCGGTAGTCGTCGTCGTCACCTTCGTCGTCGTATCACCGGTTACGGTAATCGTCGGAGTTACCGTTGTTGTCACGGTGGTCGTCGTCGTCAACGTAAGTTGGTCGGTTGTTGTTGTTGTTGTTAGTGTTGTTGTTGTAGTCGTTGTAGTCGTCG
**********************************************************************.........((..(((.....((.((.(((((((....))))))))).)).....(((((.......))))))))))..*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 M062
head
 SRR902010
ovaries
...........GGAATGGCGTCGGGGCTA............................................................................................................................................................................................... 18 2 1 1.00 1 1 0 0 0
................................................................................................................................................GTCGTCGTCTACAACGTATGTTG..................................................... 23 3 1 1.00 1 1 0 0 0
.....................................................................................................CCCGGTTACGATAATCGTCGG.................................................................................................. 21 2 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................GTTGTAGTCGTTGCAGTCGT.. 20 1 3 0.33 1 1 0 0 0
.........CGTGAAATGCGTCGGGGGTAT.............................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0
...................................................................................................................................................................GTTGGTCGATTGGTGTTGTTC.................................... 21 3 5 0.20 1 1 0 0 0
.......................................................................................................CGGGTACGGAAATCGTCG................................................................................................... 18 2 6 0.17 1 1 0 0 0
...........................................................................................................TACGGTAATCATCGGATGTA............................................................................................. 20 3 7 0.14 1 0 1 0 0
....................................................................................................................................................................TTGGTCGATTGGTGTTGTGGT................................... 21 3 9 0.11 1 0 0 1 0
....................................GCCGCCGCCCCACCCACCACAG.................................................................................................................................................................. 22 3 12 0.08 1 0 1 0 0
......................................................................................................................TCGGAGTTACGGTGGTTG.................................................................................... 18 2 12 0.08 1 1 0 0 0
.................................................................................................................................................................AAATTGGTCGGATGTGGTT........................................ 19 3 16 0.06 1 0 1 0 0
.......................................................................................................................................................................GTCGGTTGTTGTTTTGGTTGTT............................... 22 2 20 0.05 1 0 1 0 0
.............................................................................................................................................................................TGTTGTTGTTGTTGTTA.............................. 17 0 20 0.05 1 0 0 0 1
....................................................................................................................................................................................GTTGTTGTTAGTGTGGTGG..................... 19 2 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:2791045-2791264 - dps_2646 TCCTCCGCTGCCCTTAAC----------------------GCAG--------C--CCCCA---------TCGCTGA--------------------------------GTGGCGGCGGGG----------T-----------TGGTGGGGTCT-CTGGCAGCGCCATC-----------------------------------AGCAGCAGCAGTGGAAGCAGCAGCA---TAGTGGCC---AA----------------------------------TGCC-ATTAGCAGC---------------------CTCAATGGCAACA-------------------------ACAGTGCCA-------CCAGCAGCAGC-------------------AGTTGCATTCA---ACCA--------GCCAACAAC------AACAACAACAATCACAACAACAACATCAGCAACATCAGCAGC
droPer2 scaffold_18:1688186-1688384 - TCCTCCGCTGCCCTTAAC----------------------GCAG--------C--CCCCA---------TCGCTGA--------------------------------GTGGCGGCGGGG----------T-----------TGGTGGGGTCT-CTG---G------CA--------------------------------------GCAGCAGTGGAAGCAGCAGCA---TAGTGGCC---AA----------------------------------TGCC-ATTAGCAGC---------------------CTCAATGGCAACA-------------------------ACAGTGCCA-------CCAGCAGCAGC-------------------AGTTGCATTCA---ACCA--------GCCAAC---------------AACAACAACAACAATCACAACAACAACATCAGCAGC
droWil2 scf2_1100000004830:790881-791088 - GCTGCCGCTGCC------------CAA--------------CAG--------CAGCAACA---------ACGTCAA--------------------------------GTG------------GCCGCCGCCGCCGTGGCC---GCAGCAG-C-CGCCCAA------C-----------------------------------------AGCAGCAGCAACAGCATCA---------AC---AACAGCAACAG-------CA-------------------------TCAACAGCAA------------------CAACAGCAACA-------------------------GCATCAACAGCA-------ACAGC----------------------AGCAGCATCACCAA-----------CAGCAGCAGC------AGCAACACCAACAGCAGCAGCAACACCAACAACACCAGCAAC
droVir3 scaffold_13052:1898007-1898225 - GCAGCAGTAGTAAT----------TAG-----C------TGCAG--------C---AGCA---------ACAGC------------------------------------C------------GCAGCAGCAGCAGCAGCC---GCAGCAG-------------CAGCC---G--------------------------C---------AGCAGCAACAGCAGCAGCAAAT------------GCAGCAACAT-------CA------AAATCAG---CTGC-CGTAACAGC---------------------CGCAGCAGCAGCA-------------------------GCAGCAGCA-------GCAGCAGCAGC-------------------AGCAGCAGCCACAA-----------CAACAACAAC------AACAACAACAACAACAACAACAACAACAACAATATCATCATC
droMoj3 scaffold_6473:11064642-11064859 - ACAGCAGCAGCAG-----------CAG-----C------AGCAG--------C---AGCA---------GCAGCAG--------------------------CAGCAGCA----G------------------CAGCAG---CAGCAGCAG-------------CAGCA---GCAGCAG--------------------C---------AGCAGCAGCAGCAGCAG------------------CAGCAGCAG-------CA------GCAGCAG---CAAC-AGCAGCAGC---------------------AGCAACAGCAGCA-------------------------GCAGCAACA-------GCAGCAGCAGC-------------------AACAGCAGCAGCAG-----------CAACAGCAGC------AGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAACAGCAGC
droGri2 scaffold_15126:367152-367363 - TCATCAGCGGCTC-----------CAA--------------TAA--------TG---------------------------TGGTGACCAGC--------AATG----GTCCCGGCGTCA----------T-----------TGGCAGCAATT-TACCCAG------C-----------------------------------------AACAACAGCAGCAACAATA---------------GCATCAGCAG-------TC------TCGTTGT---TGGC-GCTGGCAAA---------------------GGCAACAGCAACA-------------------------ACAGCAACAACA-------GCAGCAA-------------------CAACAGCA------G-----------CAGCAACAAC------AACAGCAACAATGGCAACAATAACAACAGCAGTGGCACCAAC
droAna3 scaffold_13337:15772448-15772676 + TCCTCAAGGGCGC-----------CAG-----C------CACAGGGGGCCAAA--TCTCA---------CCGCAAG--------------------------------GTGCCAGCACAG----------C-----------CGGCT-----T-GGACCAG---CAGCA---G--------------------------CAACAGCAACATCAGTTGCACCATCAGCAGT------------------ACT--------------------------------ACAATCAAC---------------------AACAGCAGCAGCAGCA----------------------GCACCAGTA-------C---CAACAGCAACAGCAACGTGAAAACT-TTT------TG---GCCT--------ACCAGCAAC---AGCAGC---AGCAACAACAACACCAACAGCAACAACAACAGCAAC
droBip1 scf7180000396431:787332-787552 + CTCGTCGCTGCAG---------AGCTC--------------CTT--------CGACGGGG---------ACACCAACTCTGTGATGACCACCTTCTCGATGATG-GA-CTC------------GCCGCCGC---------------AGCAG-------------CAGGC---G--------------------------CAGCAGCAACAACAGCAGCAGCAGCAGCAATC-----------------------------------------------------------------------------------CCAGCAGCAACA-------------------------GCAACAGCA----------GGCGG----------------------TGGTGCTCCACCAG-C-AGCAGCAGCAACAACAAC------AGCAGCAGCAAAAGCACCAACAGCATCAGCACCAGCAGCAGC
droKik1 scf7180000302778:495678-495876 + GCCGCCGTGA------AT----------------------GCAG--------C--CGCT-------------------------------------------------------------------------------GCCGCGGCATCAG----------------TG---A--------------------------CAA-----------CTAATAGCAACGTG------A----------AGCCTATTGCTCCGCCCAGCAAGCG-AGTG--GGATCACCCACCCAAG---------------------CACAGCAGCAGCAGCAGCA-------------------ACAGGCA-------------CAACAGC-------------------AGCAGCAGACTCAA-----------CAGCAGCTGC------AACAGCAACAGTTACAGCACCAACAACAGCAGTCGCAGCAGC
droFic1 scf7180000451789:487918-488122 - CTC--CACTTCCC----C----------------------GCTA--------C--TCCAA---------CCACTGA--------------------------------CAGACGGCGAGC----------T-----------GGGCATTACCCTCCA---T------CATTTCGGGCAGCAATGAAAGTTGCAGCTTAGC---------GGCAGCAGCAACATCAGCA---------------GCAGCAACAA-------C-------------------------------------------------------AGCAGCAGCA-------------------------GCAGCAGCAGCA-------GCAGCAG-------------------CAACA-----------------------ACAGCAGCAACAA---C---AGCAGCAACAACAGCAGCAGCAGCAGCAACAGCAGC
droEle1 scf7180000490214:708642-708823 + GCCACCGCCGCCA---------TC--G-----C------AGCAG--------C---AGCA---------ACAGTTG--------------------------CATCAGCT----C---------------------AAGTCACCGCAGCA----------A---CATC--------------------------------------------AGCAGCAGCAATTGCA------------------GCAGCAG-------CA-------------------------CCAGCAGCAG------------------CAGCAGCAACA-------------------------CCACCAGCAGCA-------GCAGCAG----------------------CAGCATCAG-----------------CAACAAC---AC---C---AGCAGCAACATCACCAGCAGCAGCAACAGCAGCAGC
droRho1 scf7180000777200:277480-277701 - CTGT-TG---CCTCTGGCGCTGTT--G-----CTGGC--------------------------------GTTCCGG--------------------------------G-------------------CGTTGGGGCGGCTGCGG-TGCAG-C-CGGGCAA------CA---A--------------------------CA-----------ATCTGCAGCAGCTGT----------------GCACCGATAA-------TC------T-GGTGCTGGCGCC-ACC-------------------------------GCCGCAGTT--------------CTGCGATTGCAACGATGCCA---AGCACGCGCCGCAG----------------------CCGCATCTGCCAACGA--------GCCAATATCATCCA---C---AGCAGCAACAGCAACAGCAGCAGCAGCAACAGCAGC
droBia1 scf7180000302428:2922108-2922325 - ACACCAGCAGCAC-----------ATA-----C------AGCAG--------C---AGCA---TCAGGCACACCAG--------------------------------CAG------------CATGTTGCCTCCGT-------------CCT-GCA---GCAGCAGCA---G--------------------------CAAC------AGCAACAGCAGCAG---------------------CAGCAACAG-------CA------GCAC------TCCC-AACATC---------------------ACGCCCAGCAGCAACA-------------------------TCATGGCCA-------TCCGCTGCATC-------------------CGCATCATACACAC-----------CAGCAACAAC------AGCAGCAGCAGCAGCAGCAACACCACCAGCAGCACCAGCAAC
droTak1 scf7180000412818:108103-108328 + TCCGCCGCCGCCG---------CCCAA--------------CAG--------CAGCAGCA---------ACGCCAA--------------------------------CTG------------GCCGCCGCCGCCGTGGCCACCGCAGCAG-T-CGCCCAA------C-----------------------------------------AGCAGCAGCAGCAGCAGCAGGCCGTCGTAC---AGCAGCAACAG-------CA----------------------------------ACAGGTTGCTGCCGCCGCCCAGCAGCAACA-------------------------CCAGCAGCAGCA-------GC-------------------------AACAGCAGGCGGTG-----------CAACAGCAAC------AGC---AGCAACACCAACAGCAGCAGCAGCAACAGCAGCAAC
droEug1 scf7180000409524:214379-214594 + CCTTTA----CGCTTGAC-----TCAACAACGCTGGGATTG-----------CAGCCGCAAGGTCAGGGA------------------------------------------------------CCGTCGC-------------------------A---GCAGCAGCA---G--------------------------CAACATCAACAGCAGCAGCAGCAGCAACAGAATAT---GCATCATCATCAACAG-------CA----------------------------------G------------------CAGCAGCATCA-------------------------ACAACAACAGCA-------GCAGC----------------------AGCAGCATATGCAA-----------CAGCATCAGC------AGCAGCATCAACAGCAGCAGCATCAACAGCAACATCAACAGC
dm3 chr3L:10578038-10578269 + GCCGCCGCTGCC------------CAA--------------CAA--------CAACAGCA---------ACGCCAA--------------------------------CTG------------GCCGCCGCCGCCGTGGCCACGGCAGCAG-T-CGCCCAA------C-----------------------------------------AGCAGCAGCAGCAGCAGCAGGCTGTTGTAC---AGCAGCAACAG-------CA----------------------------------GCAAGTGGCTGCCGCCGCCCAGCAGCAACA-------------------------CCAGCAGCAGCA-------GCAGCAG-------------------CAACAACAGGCCGTG-----------CAGCAACAAC------AGGCGGTCCAGCAGCAGCAGCAACATCAACAACAACAGCAGC
droSim2 3l:10324829-10325063 + TCCGCCGCCGCCG---------CCCAA--------------CAA--------CAACAGCA---------ACGCCAA--------------------------------CTG------------GCCGCCGCCGCCGTGGCCACGGCAGCAG-T-CGCCCAA------C-----------------------------------------AGCAGCAGCAGCAGCAGCAGGCTGTCGTAC---AGCAGCAACAG-------CA----------------------------------GCAAGTGGCTGCCGCCGCCCAGCAGCAACA-------------------------CCAGCAGCAGCA-------GCAGCAA-------------------CAACAACAGGCCGTG-----------CAGCAGCAAC------AGGCGGTCCAGCAGCAGCAGCAACATCAACAACAGCAGCAGC
droSec2 scaffold_0:2796490-2796721 + TCCGCCGCCGCCG---------CCCAA--------------CAA--------CAACAGCA---------ACGCCAA--------------------------------CTG------------GCCGCCGCCGCCGTGGCCACGGCAGCAG-T-CGCCCAA------C-----------------------------------------AGCAGCAGCAGCAGCAGCAGGCTGTTGTAC---AGCAGCAACAG-------CA----------------------------------GCAAGTGGCTGCCGCCGCCCAGCAGCAACA-------------------------CCAGCAGCAGCA-------GCAGCAA-------------------CAACAACAGGCCGTG-----------CAGCAGCAAC------AGGCGGTC---CAGCAGCAGCAGCAACATCAACAACAGCAGC
droYak3 X:11898619-11898828 + ACGCCCACGCCC------------TAG--------------CGA--------TAGC---------------CCACG--------------------------------G--TCATCACGG---CCTGCTGCCGTCGG---------------T-GGTCCCG---CAGC-----------------------------------------AGCAGCAGCAACAACAGC---------------AGCAGCAACAG-------CA----------------------------------GCAGG------------------CGCAACAG-----TTGCCGCCGGGCGTTG---GAGTTGCCA---G---CCCGCTGCAGC-------------------AGCAGCAGCAACAG-----------CAGCAGCAGCAACAA---C---AGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGC
droEre2 scaffold_4690:4626071-4626281 + TCCTCGGGCGGTCG----------CAA----------------G-----------CGGAA---------GCGCAAG--------------------------------AAGGAGCCGGGCGTG-GCGGCCC-----------A-GCAGCAG----------------CT---C--------------------------CATCTCCACCAGCAGCAGCAGCAGCAGCAACAGCA---ACAGCAGCAGCAGCAG-------CA----------------------------------A------------------CAGTCGCAGCA-------------------------CCAGCAACAGCA-------CCAGC----------------------AGCAGCACGCCCAG-----------CAGCTGCAGC------ACCAACAGCTGCAGCAGCAACACGCCCAGCAGCATCAGCAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TCCTCCGCTGCCCTTAAC----------------------GCAG--------C--CCCCA---------TCGCTGA--------------------------------GTGGCGGCGGGG----------T-----------TGGTGGGGTCT-CTGGCAGCGCCATC-----------------------------------AGCAGCAGCAGTGGAAGCAGCAGCA---TAGTGGCC---AA----------------------------------TGCC-ATTAGCAGC---------------------CTCAATGGCAACA-------------------------ACAGTGCCA-------CCAGCAGCAGC-------------------AGTTGCATTCA---ACCA--------GCCAACAAC------AACAACAACAATCACAACAACAACATCAGCAACATCAGCAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................TC-----------------------------------AGCAGCAGCAGTGGAAG....................................................................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................CT-CTGGCAGCGCCATC-----------------------------------AGC..................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAACAACAACATCAGCAACATCAGC...2911.0010100000000
.................................................................................................................................................................................................................................................................................................................................CAACA-------------------------ACAGTGCCA-------CCAGCAG..........................................................................................................2111.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................CA-------CCAGCAGCAGC-------------------AGTTGC.............................................................................1921.0020200000000
..............................................................................................................GGCGGCGGGG----------T-----------TGGTGGGGT.........................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................TC-----------------------------------AGCAGCAGCAGTGGAA.....................................................................................................................................................................................................................................................................1811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................CAGTGCCA-------CCAGCAGCAGC-------------------AGTTGCAT...........................................................................2711.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACATCAGCAACA........2160.8350301001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACATCAGCAACA........2080.3830200010000
...............................................................................................................................................................................................................GCAGCAGTGGAAGCAGCAGC.............................................................................................................................................................................................................................................................2030.3310100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACATCAGCAA..........1970.1410001000000
............................................................................................................................................................................................................GCAGCAGCAGTGGAAGCA..................................................................................................................................................................................................................................................................1870.1410100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACATCAGCAAC.........1990.1110100000000
droPer2
TCCTCCGCTGCCCTTAAC----------------------GCAG--------C--CCCCA---------TCGCTGA--------------------------------GTGGCGGCGGGG----------T-----------TGGTGGGGTCT-CTG---G------CA--------------------------------------GCAGCAGTGGAAGCAGCAGCA---TAGTGGCC---AA----------------------------------TGCC-ATTAGCAGC---------------------CTCAATGGCAACA-------------------------ACAGTGCCA-------CCAGCAGCAGC-------------------AGTTGCATTCA---ACCA--------GCCAAC---------------AACAACAACAACAATCACAACAACAACATCAGCAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................GGCC---AA----------------------------------TGCC-ATTAGCAGC---------------------CTCAATG................................................................................................................................................................2611.001010000
..................................................................................................................................................................................................................................................................................................................................AACA-------------------------ACAGTGCCA-------CCAGCAGCAGC-------------------AGT................................................................................2711.001001000
droWil2
GCTGCCGCTGCC------------CAA--------------CAG--------CAGCAACA---------ACGTCAA--------------------------------GTG------------GCCGCCGCCGCCGTGGCC---GCAGCAG-C-CGCCCAA------C-----------------------------------------AGCAGCAGCAACAGCATCA---------AC---AACAGCAACAG-------CA-------------------------TCAACAGCAA------------------CAACAGCAACA-------------------------GCATCAACAGCA-------ACAGC----------------------AGCAGCATCACCAA-----------CAGCAGCAGC------AGCAACACCAACAGCAGCAGCAACACCAACAACACCAGCAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................AACA-------------------------GCATCAACAGCA-------ACAGC----------------------AGCAGCA............................................................................2811.00100010
.................................................................................................................................GCCGCCGTGGCC---GCAGCAG-C-C.....................................................................................................................................................................................................................................................................................................................................2111.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCACCAA-----------CAGCA.....................................................1820.50100010
....................................................................................................................................................................................................................................................................................................................................................................AACAGCA-------ACAGC----------------------AGCAGC.............................................................................18200.15300030
...................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCAA-----------CAGCAGCAGC------AGCA......................................2280.13100010
............................................................................................................................................................CCCAA------C-----------------------------------------AGCAGCAGCAACAGC................................................................................................................................................................................................................................................................2190.11110000
....................................................................................................................................................................................................................................................................................................................................CA-------------------------GCATCAACAGCA-------ACAGC----------------------...................................................................................19100.10100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACCAACAGCAGCAGCA....................19200.10200020
...............................................................................................................................................................AA------C-----------------------------------------AGCAGCAGCAACAGCAT..............................................................................................................................................................................................................................................................20130.08100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAACAGCAGCAGCAAC..................20140.07100010
.................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCA-------ACAGC----------------------AGCAGC.............................................................................21150.07101000
.....................................................................................................................................................................................................................................................................A-------------------------TCAACAGCAA------------------CAACAGCA.............................................................................................................................................................19170.06100010
.....................................................................................................................................................................................................................................................................A-------------------------TCAACAGCAA------------------CAACAGC..............................................................................................................................................................18200.05100010
.................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCA-------ACAGC----------------------AGC................................................................................18200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACCAACAGCAGCAGC.....................18200.05100010
droVir3
GCAGCAGTAGTAAT----------TAG-----C------TGCAG--------C---AGCA---------ACAGC------------------------------------C------------GCAGCAGCAGCAGCAGCC---GCAGCAG-------------CAGCC---G--------------------------C---------AGCAGCAACAGCAGCAGCAAAT------------GCAGCAACAT-------CA------AAATCAG---CTGC-CGTAACAGC---------------------CGCAGCAGCAGCA-------------------------GCAGCAGCA-------GCAGCAGCAGC-------------------AGCAGCAGCCACAA-----------CAACAACAAC------AACAACAACAACAACAACAACAACAACAACAATATCATCATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................AT------------GCAGCAACAT-------CA------AAATCAG---..........................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AACAT-------CA------AAATCAG---CTGC-CGTAA................................................................................................................................................................................................2311.001000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAATATCATCATC2311.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CAG---CTGC-CGTAACAGC---------------------CGCAGCAGCA.............................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAACAACAACA..............25200.306006000000000000000000000000000000000000000000000000000000000000
................................C------TGCAG--------C---AGCA---------ACAGC------------------------------------C------------GC...................................................................................................................................................................................................................................................................................................................................................................1950.201000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................CAGCAGCAGCAGCAGCC---GCAG............................................................................................................................................................................................................................................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
........................................................................GC------------------------------------C------------GCAGCAGCAGCAGCAGCC---GC..............................................................................................................................................................................................................................................................................................................................................2390.111001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................G-------------CAGCC---G--------------------------C---------AGCAGCAACAGCA..................................................................................................................................................................................................................................................................2190.111001000000000000000000000000000000000000000000000000000000000000
.........................................CAG--------C---AGCA---------ACAGC------------------------------------C------------GCAGCAG..............................................................................................................................................................................................................................................................................................................................................................21110.091000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CAGC-------------------AGCAGCAGCCACAA-----------CAACA.....................................................23120.081001000000000000000000000000000000000000000000000000000000000000
..........................................AG--------C---AGCA---------ACAGC------------------------------------C------------GCAGCAG..............................................................................................................................................................................................................................................................................................................................................................20140.071000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................CAGCAGCC---GCAGCAG-------------CAGCC---G--------------------------.........................................................................................................................................................................................................................................................................................21160.061001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CC---GCAGCAG-------------CAGCC---G--------------------------C---------AGCAGC.........................................................................................................................................................................................................................................................................22180.061000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAATATC......22180.061000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GC-------------------AGCAGCAGCCACAA-----------CAAC......................................................20190.051000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GCAGC-------------------AGCAGCAGCCACAA-----------C.........................................................20200.051000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AGCAGC-------------------AGCAGCAGCCACA......................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAACA....................20200.051000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................AGCAGCC---GCAGCAG-------------CAGCC---....................................................................................................................................................................................................................................................................................................................19200.051000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................CAGCAGCAGCAGCC---GCAGCA..........................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................AGCAGCC---GCAGCAG-------------CAGC........................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................A---------ACAGC------------------------------------C------------GCAGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCACAA-----------CAACAACAAC------AACAAC....................................22200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GCA-------GCAGCAGCAGC-------------------AGCAGCAGCCAC.......................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CAGCC---GCAGCAG-------------CAGCC---G--------------------------C---------AG.............................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................A---------ACAGC------------------------------------C------------GCAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................C---G--------------------------C---------AGCAGCAACAGCAGCAGCA............................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................AGCC---GCAGCAG-------------CAGCC---G--------------------------C---------AGC............................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCACAA-----------CAACAACAAC------AACAACAACAACAACAACAA......................36200.051000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................CC---GCAGCAG-------------CAGCC---G--------------------------C---------AGCAG..........................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
droMoj3
ACAGCAGCAGCAG-----------CAG-----C------AGCAG--------C---AGCA---------GCAGCAG--------------------------CAGCAGCA----G------------------CAGCAG---CAGCAGCAG-------------CAGCA---GCAGCAG--------------------C---------AGCAGCAGCAGCAGCAG------------------CAGCAGCAG-------CA------GCAGCAG---CAAC-AGCAGCAGC---------------------AGCAACAGCAGCA-------------------------GCAGCAACA-------GCAGCAGCAGC-------------------AACAGCAGCAGCAG-----------CAACAGCAGC------AGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAACAGCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAACAACAGCAG.25200.051100000
.........................................................................................................CAGCA----G------------------CAGCAG---CAGCAGCA..........................................................................................................................................................................................................................................................................................................................................20200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCA.................19200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAA..........19200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAACAGCAGCAGCA...........27200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCAAC.........23200.051000010
............................................................................................................................................................................................................................................................................GCAGCAG---CAAC-AGCAGCA..............................................................................................................................................................................................18200.051100000
..................................................................................................................................................................................................................................................................................G---CAAC-AGCAGCAGC---------------------AGCAACA................................................................................................................................................................21200.051100000
........................................................................................................................................................................................................................................................AGCAG-------CA------GCAGCAG---CAAC-AGCAGCA..............................................................................................................................................................................................25200.051001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AGCAGCAACAGCAGCAGCAAC.....................23200.051000010
......................................................................................................CAGCAGCA----G------------------CAGCAG---CAGCA.............................................................................................................................................................................................................................................................................................................................................20200.051000001
droGri2
TCATCAGCGGCTC-----------CAA--------------TAA--------TG---------------------------TGGTGACCAGC--------AATG----GTCCCGGCGTCA----------T-----------TGGCAGCAATT-TACCCAG------C-----------------------------------------AACAACAGCAGCAACAATA---------------GCATCAGCAG-------TC------TCGTTGT---TGGC-GCTGGCAAA---------------------GGCAACAGCAACA-------------------------ACAGCAACAACA-------GCAGCAA-------------------CAACAGCA------G-----------CAGCAACAAC------AACAGCAACAATGGCAACAATAACAACAGCAGTGGCACCAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA------G-----------CAGCAACAAC------A.........................................20200.05110
droAna3
TCCTCAAGGGCGC-----------CAG-----C------CACAGGGGGCCAAA--TCTCA---------CCGCAAG--------------------------------GTGCCAGCACAG----------C-----------CGGCT-----T-GGACCAG---CAGCA---G--------------------------CAACAGCAACATCAGTTGCACCATCAGCAGT------------------ACT--------------------------------ACAATCAAC---------------------AACAGCAGCAGCAGCA----------------------GCACCAGTA-------C---CAACAGCAACAGCAACGTGAAAACT-TTT------TG---GCCT--------ACCAGCAAC---AGCAGC---AGCAACAACAACACCAACAGCAACAACAACAGCAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................CT--------ACCAGCAAC---AGCAGC---AGC.................................2091.1110072010
....................................................................................................................................................................................................................................................................................................................................................................AGTA-------C---CAACAGCAACAGCA...............................................................................................1911.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................AGCAACGTGAAAACT-TTT------TG---G....................................................................2111.001000010
.....................................................................................................................CAG----------C-----------CGGCT-----T-GGACCAG---CAGCA---....................................................................................................................................................................................................................................................................................................................2211.001000100
.........................................................................................................................................................................................................................................................CT--------------------------------ACAATCAAC---------------------AACAGCAGCAGCAGCA----------------------G................................................................................................................................2811.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACGTGAAAACT-TTT------TG---GC...................................................................2811.001000001
...........................................................................................................................................................................................................................CCATCAGCAGT------------------ACT--------------------------------ACAATCAA.............................................................................................................................................................................................2211.001000001
........................................................................................................................................................................................................................GCACCATCAGCAGT------------------ACT--------------------------------AC...................................................................................................................................................................................................1911.001010000
..................................................................................................................................................T-----T-GGACCAG---CAGCA---G--------------------------CAACA....................................................................................................................................................................................................................................................................................2011.001000001
.............................................................................................................................................................................................................................................................................................AATCAAC---------------------AACAGCAGCAGCAGCA----------------------.................................................................................................................................2320.501000001
.............................................................................................................................................................................................................................................................................................AATCAAC---------------------AACAGCAGCAGCAGCA----------------------GC...............................................................................................................................2520.501000001
..............................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA----------------------GCACCAGTA-------C---.............................................................................................................2120.501100000
..............................................................................................................................................................................................................................................................................................ATCAAC---------------------AACAGCAGCAGCAGCA----------------------GC...............................................................................................................................2430.331010000
............................................................................................................................................................................................................................................................................................................................................................................................................................CCT--------ACCAGCAAC---AGCAGC---AGC.................................2140.251010000
..............................................................................................................................................................................................................................................................................................ATCAAC---------------------AACAGCAGCAGCAGC........................................................................................................................................................2150.201010000
.................................................................................................................................................................................................................................................................................................AAC---------------------AACAGCAGCAGCAGCA----------------------.................................................................................................................................19200.204000004
.............................................................................................................................................................................................................................................................................................................................................................................................................................CT--------ACCAGCAAC---AGCAGC---AGCA................................2190.111001000
...........................................................................................................................................................GACCAG---CAGCA---G--------------------------CAACAGCC.................................................................................................................................................................................................................................................................................2090.111010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CT--------ACCAGCAAC---AGCAGC---AG..................................1990.111100000
.........................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCA----------------------GCACC............................................................................................................................2190.111010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---AGCAGC---AGCAACAACAAC........................21200.102020000
..................................................................................................................................................................................................................................................................................................AC---------------------AACAGCAGCAGCAGCA----------------------GC...............................................................................................................................20200.102020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC---AGCAGC---AGCAACAACAACA.......................25140.071010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................T--------ACCAGCAAC---AGCAGC---AGCA................................20140.071010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AC---AGCAGC---AGCAACAACAAC........................20200.051010000
................................................................................................................................................................................................................................................................................................CAAC---------------------AACAGCAGCAGCAGCA----------------------GC...............................................................................................................................22200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---AGCAGC---AGCAACAACAACA.......................23200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---AGCAGC---AGCAACAACA..........................19200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC---AGCAGC---AGCAACA.............................20200.051000001
..............................................................................................................................................................CAG---CAGCA---G--------------------------CAACAGCAAC...............................................................................................................................................................................................................................................................................19200.051010000
..................................................................................................................................................................................................................................................................................................AC---------------------AACAGCAGCAGCAGCA----------------------.................................................................................................................................18200.051010000
droBip1
CTCGTCGCTGCAG---------AGCTC--------------CTT--------CGACGGGG---------ACACCAACTCTGTGATGACCACCTTCTCGATGATG-GA-CTC------------GCCGCCGC---------------AGCAG-------------CAGGC---G--------------------------CAGCAGCAACAACAGCAGCAGCAGCAGCAATC-----------------------------------------------------------------------------------CCAGCAGCAACA-------------------------GCAACAGCA----------GGCGG----------------------TGGTGCTCCACCAG-C-AGCAGCAGCAACAACAAC------AGCAGCAGCAAAAGCACCAACAGCATCAGCACCAGCAGCAGCSizeHit CountTotal NormTotal
No Reads
droKik1
GCCGCCGTGA------AT----------------------GCAG--------C--CGCT-------------------------------------------------------------------------------GCCGCGGCATCAG----------------TG---A--------------------------CAA-----------CTAATAGCAACGTG------A----------AGCCTATTGCTCCGCCCAGCAAGCG-AGTG--GGATCACCCACCCAAG---------------------CACAGCAGCAGCAGCAGCA-------------------ACAGGCA-------------CAACAGC-------------------AGCAGCAGACTCAA-----------CAGCAGCTGC------AACAGCAACAGTTACAGCACCAACAACAGCAGTCGCAGCAGCSizeHit CountTotal NormTotal
No Reads
droFic1
CTC--CACTTCCC----C----------------------GCTA--------C--TCCAA---------CCACTGA--------------------------------CAGACGGCGAGC----------T-----------GGGCATTACCCTCCA---T------CATTTCGGGCAGCAATGAAAGTTGCAGCTTAGC---------GGCAGCAGCAACATCAGCA---------------GCAGCAACAA-------C-------------------------------------------------------AGCAGCAGCA-------------------------GCAGCAGCAGCA-------GCAGCAG-------------------CAACA-----------------------ACAGCAGCAACAA---C---AGCAGCAACAACAGCAGCAGCAGCAGCAACAGCAGCSizeHit CountTotal NormTotal
No Reads
droEle1
GCCACCGCCGCCA---------TC--G-----C------AGCAG--------C---AGCA---------ACAGTTG--------------------------CATCAGCT----C---------------------AAGTCACCGCAGCA----------A---CATC--------------------------------------------AGCAGCAGCAATTGCA------------------GCAGCAG-------CA-------------------------CCAGCAGCAG------------------CAGCAGCAACA-------------------------CCACCAGCAGCA-------GCAGCAG----------------------CAGCATCAG-----------------CAACAAC---AC---C---AGCAGCAACATCACCAGCAGCAGCAACAGCAGCAGCSizeHit CountTotal NormTotal
No Reads
droRho1
CTGT-TG---CCTCTGGCGCTGTT--G-----CTGGC--------------------------------GTTCCGG--------------------------------G-------------------CGTTGGGGCGGCTGCGG-TGCAG-C-CGGGCAA------CA---A--------------------------CA-----------ATCTGCAGCAGCTGT----------------GCACCGATAA-------TC------T-GGTGCTGGCGCC-ACC-------------------------------GCCGCAGTT--------------CTGCGATTGCAACGATGCCA---AGCACGCGCCGCAG----------------------CCGCATCTGCCAACGA--------GCCAATATCATCCA---C---AGCAGCAACAGCAACAGCAGCAGCAGCAACAGCAGCSizeHit CountTotal NormTotal
No Reads
droBia1
ACACCAGCAGCAC-----------ATA-----C------AGCAG--------C---AGCA---TCAGGCACACCAG--------------------------------CAG------------CATGTTGCCTCCGT-------------CCT-GCA---GCAGCAGCA---G--------------------------CAAC------AGCAACAGCAGCAG---------------------CAGCAACAG-------CA------GCAC------TCCC-AACATC---------------------ACGCCCAGCAGCAACA-------------------------TCATGGCCA-------TCCGCTGCATC-------------------CGCATCATACACAC-----------CAGCAACAAC------AGCAGCAGCAGCAGCAGCAACACCACCAGCAGCACCAGCAACSizeHit CountTotal NormTotal
No Reads
droTak1
TCCGCCGCCGCCG---------CCCAA--------------CAG--------CAGCAGCA---------ACGCCAA--------------------------------CTG------------GCCGCCGCCGCCGTGGCCACCGCAGCAG-T-CGCCCAA------C-----------------------------------------AGCAGCAGCAGCAGCAGCAGGCCGTCGTAC---AGCAGCAACAG-------CA----------------------------------ACAGGTTGCTGCCGCCGCCCAGCAGCAACA-------------------------CCAGCAGCAGCA-------GC-------------------------AACAGCAGGCGGTG-----------CAACAGCAAC------AGC---AGCAACACCAACAGCAGCAGCAGCAACAGCAGCAACSizeHit CountTotal NormTotal
No Reads
droEug1
CCTTTA----CGCTTGAC-----TCAACAACGCTGGGATTG-----------CAGCCGCAAGGTCAGGGA------------------------------------------------------CCGTCGC-------------------------A---GCAGCAGCA---G--------------------------CAACATCAACAGCAGCAGCAGCAGCAACAGAATAT---GCATCATCATCAACAG-------CA----------------------------------G------------------CAGCAGCATCA-------------------------ACAACAACAGCA-------GCAGC----------------------AGCAGCATATGCAA-----------CAGCATCAGC------AGCAGCATCAACAGCAGCAGCATCAACAGCAACATCAACAGCSizeHit CountTotal NormTotal
No Reads
dm3
GCCGCCGCTGCC------------CAA--------------CAA--------CAACAGCA---------ACGCCAA--------------------------------CTG------------GCCGCCGCCGCCGTGGCCACGGCAGCAG-T-CGCCCAA------C-----------------------------------------AGCAGCAGCAGCAGCAGCAGGCTGTTGTAC---AGCAGCAACAG-------CA----------------------------------GCAAGTGGCTGCCGCCGCCCAGCAGCAACA-------------------------CCAGCAGCAGCA-------GCAGCAG-------------------CAACAACAGGCCGTG-----------CAGCAACAAC------AGGCGGTCCAGCAGCAGCAGCAACATCAACAACAACAGCAGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........GCC------------CAA--------------CAA--------CAACAGCA---------ACGCCAA--------------------------------CT..................................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CAA--------------CAA--------CAACAGCA---------ACGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GCC------------CAA--------------CAA--------CAACAGCA---------ACGCCAA--------------------------------CC..................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGTCCAGCAGCAGCAGCAACAT................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................CCAGCAGCAACA-------------------------CCAGCAGCAGC......................................................................................................................2321.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TGTTGTAC---AGCAGCAACAG-------CA----------------------------------G.......................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AC------AGGCGGTCCAGCAGCAGCAGCA....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................G-------------------CAACAACAGGCCGTG-----------CAGCAACAA.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GTGGCCACGGCAGCAG-T-CGCC..................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................TTGTAC---AGCAGCAACAG-------CA----------------------------------GCAAGTGGC...............................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AACAGCA---------ACGCCAA--------------------------------CTG------------GCCGC................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................CAA--------CAACAGCA---------ACGCCAA--------------------------------CTG------------.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ACA-------------------------CCAGCAGCAGCA-------GCAGCAG-------------------CAAC................................................................................2680.6350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGGCTG.......................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCAACAACAACAGCAGC2320.5010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACATCAACAACAACAGCAG.2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................CCAA------C-----------------------------------------AGCAGCAGCAGCAGCAGCAGGC.........................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AGCAGCA-------GCAGCAG-------------------CAACA...............................................................................19200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATCAACAACAACAGC...2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACATCAACAACAACAGC...2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACATCAACAACAACA.....2150.2010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACATCAACAACAACAGCAT.2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................A------C-----------------------------------------AGCAGCAGCAGCAGCAGCA............................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................C-----------------------------------------AGCAGCAGCAGCAGCAGCAG...........................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AACA-------------------------CCAGCAGCAGCA-------GCAGCAG-------------------CAAC................................................................................2770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AGCAACA-------------------------CCAGCAGCAGCA-------GCAGCAG-------------------CA..................................................................................2870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CAGCAACA-------------------------CCAGCAGCAGCA-------GCAGCA........................................................................................................2690.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ACA-------------------------CCAGCAGCAGCA-------GCA...........................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CAGCA-------GCAGCAG-------------------CAACAACAG...........................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................CAACA-------------------------CCAGCAGCAGCA-------G.............................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AACA-------------------------CCAGCAGCAGCA-------GC............................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................CCAA------C-----------------------------------------AGCAGCAGCAGCAGC................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AACA-------------------------CCAGCAGCAGCA-------GCA...........................................................................................................19200.1020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................GCAGCAGCAGCAGCAGGC.........................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................CCAGCAGCAGCA-------GCAGCAG-------------------CAACAA..............................................................................25120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACATCAACAACA........20140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ACA-------------------------CCAGCAGCAGCA-------GCAGCAG-------------------CA..................................................................................24140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AGCAACA-------------------------CCAGCAGCAGCA-------GC............................................................................................................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCAGCAACA-------------------------CCAGCAGCAGC......................................................................................................................20160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CAGCAGCAACA-------------------------CCAGCAGCAGCA-------GCC...........................................................................................................26170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CAGCAACA-------------------------CCAGCAGCAGCA-------G.............................................................................................................21180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GCAACA-------------------------CCAGCAGCAGCA-------GCA...........................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................CCAA------C-----------------------------------------AGCAGCAGCAGCA..................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................................AGCAGCAACA-------------------------CCAGCAGCA........................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................CCAA------C-----------------------------------------AGCAGCAGCAGCAGCA...............................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................AA------C-----------------------------------------AGCAGCAGCAGCAGCAGC.............................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CA-------------------------CCAGCAGCAGCA-------GCAGCAG-------------------....................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA-------GCAGCAG-------------------CAACAACAG...........................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................CAA------C-----------------------------------------AGCAGCAGCAGCAGCAGCA............................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA-------GCAGCAG-------------------CAACAACA............................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CA-------------------------CCAGCAGCAGCA-------GCAGCA........................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA-------GCAGCAG-------------------CAACAACAG...........................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACATC...............18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AGCAGCA-------GCAGCAG-------------------CAACAACA............................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................CCAGCAGCAGCA-------GCAGCAG-------------------CA..................................................................................21200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................A------C-----------------------------------------AGCAGCAGCAGCAGCAGC.............................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................CAA------C-----------------------------------------AGCAGCAGCAGCAG.................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AGCAGCA-------GCAGCAG-------------------CAACAA..............................................................................20200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AA------C-----------------------------------------AGCAGCAGCAGCAGCAGCA............................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGGC.........................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................AA------C-----------------------------------------AGCAGCAGCAGCAGCA...............................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AGCAACA-------------------------CCAGCAGCAGC......................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GCAGCA-------GCAGCAG-------------------CAACAACA............................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CAA------C-----------------------------------------AGCAGCAGCAGCAGC................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACATCAA.............21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................A-------------------------CCAGCAGCAGCA-------GCAGCAG-------------------C...................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................................................CAGCA-------GCAGCAG-------------------CAACAAC.............................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
droSim2
TCCGCCGCCGCCG---------CCCAA--------------CAA--------CAACAGCA---------ACGCCAA--------------------------------CTG------------GCCGCCGCCGCCGTGGCCACGGCAGCAG-T-CGCCCAA------C-----------------------------------------AGCAGCAGCAGCAGCAGCAGGCTGTCGTAC---AGCAGCAACAG-------CA----------------------------------GCAAGTGGCTGCCGCCGCCCAGCAGCAACA-------------------------CCAGCAGCAGCA-------GCAGCAA-------------------CAACAACAGGCCGTG-----------CAGCAGCAAC------AGGCGGTCCAGCAGCAGCAGCAACATCAACAACAGCAGCAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................CGCCGTGGCCACGGCAGCAG-T-CGCCCA................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGGCTG.......................................................................................................................................................................................................................................................2211.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACATCAACAACAGC......1940.25101000000000000000
....................................................................................................................................................................................................................................................................................................................................CA-------------------------CCAGCAGCAGCA-------GC............................................................................................................16200.05100000001000000000
...............................................................................................................................................................................................................................................................................................................................AGCAACA-------------------------CCAGCAGCA........................................................................................................................16200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA-------GCAGCAA-------------------C...................................................................................19200.05100010000000000000
droSec2
TCCGCCGCCGCCG---------CCCAA--------------CAA--------CAACAGCA---------ACGCCAA--------------------------------CTG------------GCCGCCGCCGCCGTGGCCACGGCAGCAG-T-CGCCCAA------C-----------------------------------------AGCAGCAGCAGCAGCAGCAGGCTGTTGTAC---AGCAGCAACAG-------CA----------------------------------GCAAGTGGCTGCCGCCGCCCAGCAGCAACA-------------------------CCAGCAGCAGCA-------GCAGCAA-------------------CAACAACAGGCCGTG-----------CAGCAGCAAC------AGGCGGTC---CAGCAGCAGCAGCAACATCAACAACAGCAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................CAACAGGCCGTG-----------CAGCAGCAAC------A.........................................2311.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCCGTG-----------CAGCAGCAAC------AGG.......................................2311.0010010
.....................................................................................................................................................................................................................................................................................................................................A-------------------------CCAGCAGCAGCA-------GCAGCAA-------------------CAAC................................................................................2470.1410010
...............................................................................................................................................................................................................................................................................................................................AGCAACA-------------------------CCAGCAGCAGCA-------..............................................................................................................19200.0510010
...............................................................................................................................................................................................................................................................................................................................................................CCAGCAGCAGCA-------GCAGCAA-------------------CA..................................................................................21200.0510010
......................................................................................................................................................................................................................................................................................................................................................................CAGCA-------GCAGCAA-------------------CAACAAC.............................................................................19200.0510010
...............................................................................................................................................................................................................................................................................................................................AGCAACA-------------------------CCAGCAGCAGC......................................................................................................................18200.0510010
.............................................................................................................................................................................................................................................AC---AGCAGCAACAG-------CA----------------------------------GCA.....................................................................................................................................................................................18200.0510001
droYak3
ACGCCCACGCCC------------TAG--------------CGA--------TAGC---------------CCACG--------------------------------G--TCATCACGG---CCTGCTGCCGTCGG---------------T-GGTCCCG---CAGC-----------------------------------------AGCAGCAGCAACAACAGC---------------AGCAGCAACAG-------CA----------------------------------GCAGG------------------CGCAACAG-----TTGCCGCCGGGCGTTG---GAGTTGCCA---G---CCCGCTGCAGC-------------------AGCAGCAGCAACAG-----------CAGCAGCAGCAACAA---C---AGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAA---C---AGCAGCAGCAGC........................23200.15303000000000
..................................................................................................................................................................................................................................C---------------AGCAGCAACAG-------CA----------------------------------GCAGG------------------CGCA.............................................................................................................................................................2380.13100000010000
.....................................................................................................................................................................................................................GCAGCAACAACAGC---------------AGCAGCA.......................................................................................................................................................................................................................................21200.10202000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---C---AGCAGCAGCAGCAACAGCAACAGCA...........28120.08101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAA---C---AGCAGCAGCAGCAACAGC..................27170.06100100000000
.....................................................................................................................................................................................................................GCAGCAACAACAGC---------------AGCAGCAACAG-------CA----------------------------------GC......................................................................................................................................................................................29180.06100100000000
....................................................................................................................................................................................................................................................................................................................................................................................TGCAGC-------------------AGCAGCAGCAACAG-----------..........................................................20200.05101000000000
.....................................................................................................................................................................................................................GCAGCAACAACAGC---------------AGCAGCAACAG-------C...........................................................................................................................................................................................................................26200.05101000000000
.....................................................................................................................................................................................................................GCAGCAACAACAGC---------------AGCAGCAAC.....................................................................................................................................................................................................................................23200.05101000000000
....................................................................................................................................................................CAGC-----------------------------------------AGCAGCAGCAACAACA...............................................................................................................................................................................................................................................................20200.05100000010000
.........................................................................................................................................................................................................................CAACAACAGC---------------AGCAGCAACAG-------CA----------------------------------G.......................................................................................................................................................................................24200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAG-----------CAGCAGCAGCAAC.............................................26200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................G-----------CAGCAGCAGCAACAA---C---AGCAGC..............................23200.05100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAGCAGCAGC......23200.05100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAACAGCAGCAGCAGC...25200.05101000000000
.......................................................................................................................................................................................................................AGCAACAACAGC---------------AGCAGCAACAG-------C...........................................................................................................................................................................................................................24200.05100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAACAGCAGCA........24200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCAGCAGC23200.05101000000000
.....................................................................................................................................................................................................................GCAGCAACAACAGC---------------AGCAGCAACA....................................................................................................................................................................................................................................24200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAA---C---AGCAGCAGCAGC........................21200.05100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAGCAGCA..22200.05100100000000
.....................................................................................................................................................................................................................GCAGCAACAACAGC---------------AGCAGCAACAG-------............................................................................................................................................................................................................................25200.05101000000000
......................................................................................................................................................................................................................CAGCAACAACAGC---------------AGCAGCAACAG-------C...........................................................................................................................................................................................................................25200.05100100000000
droEre2
TCCTCGGGCGGTCG----------CAA----------------G-----------CGGAA---------GCGCAAG--------------------------------AAGGAGCCGGGCGTG-GCGGCCC-----------A-GCAGCAG----------------CT---C--------------------------CATCTCCACCAGCAGCAGCAGCAGCAGCAACAGCA---ACAGCAGCAGCAGCAG-------CA----------------------------------A------------------CAGTCGCAGCA-------------------------CCAGCAACAGCA-------CCAGC----------------------AGCAGCACGCCCAG-----------CAGCTGCAGC------ACCAACAGCTGCAGCAGCAACACGCCCAGCAGCATCAGCAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCA-------CCAGC----------------------AGC................................................................................1990.1110100000
.....................................................................................................................................................................................................................................CAGCA---ACAGCAGCAGCAGC.....................................................................................................................................................................................................................................19200.1022000000
..............................................................................................................................................................................................................ACCAGCAGCAGCAGCAGCAG..............................................................................................................................................................................................................................................................20200.0510100000
............................................................................................................................................................................................................CCACCAGCAGCAGCAGCAGCA...............................................................................................................................................................................................................................................................21200.0510000010
.....................................................................................................................................................................................................................................CAGCA---ACAGCAGCAGCAGCAG-------CA----------------------------------A------------------CA...................................................................................................................................................................26200.0511000000
.............................................................................................................................................................................................................CACCAGCAGCAGCAGCAGC................................................................................................................................................................................................................................................................19200.0510000010
.............................................................................................................................................................................................................CACCAGCAGCAGCAGCAGCAGCA............................................................................................................................................................................................................................................................23200.0510000100
..................................................................................................................................................................................................................................CAACAGCA---ACAGCAGCAGCAGCA....................................................................................................................................................................................................................................23200.0510000100
...................................................................................................................................................................................................................................AACAGCA---ACAGCAGCAGCA.......................................................................................................................................................................................................................................19200.0510001000
.................................................................................................................................................................................................................................GCAACAGCA---ACAGCAGCAGCAGCA....................................................................................................................................................................................................................................24200.0510000010
............................................................................................................................................................................................................CCACCAGCAGCAGCAGCAGC................................................................................................................................................................................................................................................................20200.0510001000

Generated: 05/18/2015 at 05:07 AM