ID:

dps_2607

 Coordinate:

XL_group1e:799051-799201 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.7 -10.8 -10.7

Flybase annnotation

CDS [Dpse\GA27994-cds]; exon [dpse_GLEANR_724:1]; intron [Dpse\GA27994-in]

Repeatable elements

NameClassFamilyStrand
BilboLINELOA+
mature
star
  1. dps_2607  XL_group1e:799156-799181 +
  2. XL_group1e:801094-801119 -
  3. XL_group1e:1272884-1272909 -
  4. Unknown_group_249:277-302 +
  5. Unknown_group_401:4076-4101 -
  6. Unknown_group_71:3550-3575 +
  7. Unknown_singleton_3832:6541-6566 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCACCGGGACATCGAGGGCAAGGGCATAGTGGACGAGCTGGCCAGATCTGGTACTACCTCCCTTTTCAAAGAGCTCATGTAAGCTCCCCTGTAAGCTCATCATAAATCAGCAATACAAGCGACTGATAGACGAAAAGTGGCAAATAGGGTCACGTTGTCGCATAACTCGGCAAACATGGCCGACCGTAGACAAGAAGCGAACCTTAGAGCTCTGCAAACTAGGCAGGGAAAGATGTAGCGCAGTCATACGG
****************************************************************************************************************************.......................(((((.(((((((.......))))).)).)))))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 SRR902011
testis
 GSM343916
embryo
 GSM444067
head
 M059
embryo
 SRR902012
CNS imaginal disc
............................GTAGACGAGCTGGCCAGATC........................................................................................................................................................................................................... 20 1 3 5.00 15 14 0 1 0 0 0 0 0
.........................ATAGTAGACGAGCTGGCCAGA............................................................................................................................................................................................................. 21 1 3 3.67 11 11 0 0 0 0 0 0 0
.............................TAGACGAGCTGGCCAGATCTG......................................................................................................................................................................................................... 21 1 2 3.50 7 7 0 0 0 0 0 0 0
.........................ATAGTAGACGAGCTGGCCAG.............................................................................................................................................................................................................. 20 1 3 2.67 8 7 1 0 0 0 0 0 0
.............................TAGACGAGCTGGCCAGATCT.......................................................................................................................................................................................................... 20 1 2 2.50 5 5 0 0 0 0 0 0 0
..........................TAGTAGACGAGCTGGCCAGA............................................................................................................................................................................................................. 20 1 3 2.33 7 3 1 2 1 0 0 0 0
............................GTAGACGAGCTGGCCAGATCTG......................................................................................................................................................................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0 0
............................GTAGACGAGCTGGCCAGAT............................................................................................................................................................................................................ 19 1 3 2.00 6 6 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCGTAGACAAGAAGCGAACCTTAGAGC......................................... 27 0 2 2.00 4 4 0 0 0 0 0 0 0
...........................AGTAGACGAGCTGGCCAGATC........................................................................................................................................................................................................... 21 1 3 1.67 5 5 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCGTAGACAAGAAGCGAACCTTAGA........................................... 25 0 2 1.50 3 3 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAAA.................. 21 1 2 1.50 3 3 0 0 0 0 0 0 0
...........................AGTAGACGAGCTGGCCAGAT............................................................................................................................................................................................................ 20 1 3 1.33 4 4 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCGTAGACAAGAAGCGAACCTTAG............................................ 24 0 2 1.00 2 0 2 0 0 0 0 0 0
...........................AGTAGACGAGCTGGCCAGA............................................................................................................................................................................................................. 19 1 3 1.00 3 3 0 0 0 0 0 0 0
............................................................................................................................GATAGACGAAAAGTGGCAAATAGGG...................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................ATAGTAGACGAGCTGGCCA............................................................................................................................................................................................................... 19 1 3 1.00 3 1 0 0 1 0 1 0 0
...........................................................................................................................TGATAGACGAAAAGTGGCAA............................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................ACCGTAGACAAGAAGCGAACCTTAGAGC......................................... 28 0 2 1.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................ATAGACGAAAAGTGGCAAATAGG....................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
............................GTAGACGAGCTGGCCAGATCT.......................................................................................................................................................................................................... 21 1 2 1.00 2 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCAAACTAGGCAGGGAAAGATG................ 22 0 2 1.00 2 2 0 0 0 0 0 0 0
.............................TAGACGAGCTGGCCAGATC........................................................................................................................................................................................................... 19 1 3 1.00 3 3 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAACTAGGCAGGGAAAGA.................. 18 0 2 1.00 2 2 0 0 0 0 0 0 0
..........................TAGTAGACGAGCTGGCCAG.............................................................................................................................................................................................................. 19 1 3 0.67 2 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................CTGCAAACTAGGCAGGGAAAGA.................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................TGGCCGACCGTAGACAAGAAA...................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................TGGCCGACCGTAGACAAGAAGCGAAC................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................ACCGTAGACAAGAAGCGAACCT............................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCGTAGACAAGAAGCGAACCTTAGAG.......................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0
.............................TAGACGAGCTGGCCAGATCTGG........................................................................................................................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAGA.................. 21 0 2 0.50 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................CTGCAAACTAGGCAGGGAAAGAAA................ 24 2 2 0.50 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGCAAACTAGGCAGGGAAAGATG................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................................................AATAGGGTCACGTTGTCGCAT........................................................................................ 21 0 2 0.50 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................CCGTAGACAAGAAGCGAACCTT.............................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAGAA................. 22 1 2 0.50 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTAGACAAGAAGCGAACCTTAGA........................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAGATG................ 23 0 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................................TAGGGTCACGTTGTCGCATAACTCGGC................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................................TAGGGTCACGTTGTCGCATAACTCGGCA............................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGCAAACTAGGCAGGGAAAGATGTT.............. 27 1 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTGCAAACTAGGCAGGGAAAGAT................. 23 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCGTAGACAAGAAGCGAACCTTA............................................. 23 0 2 0.50 1 1 0 0 0 0 0 0 0
....................................GCTGGCCAGATGGGGTACTACC................................................................................................................................................................................................. 22 2 2 0.50 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGCAAACTAGGCAGGGAAAAA.................. 23 1 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................ACCGTAGACAAGAAGCGAACCTT.............................................. 23 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................................................................GGTCACGTTGTCGCATAACTCGGCA............................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................GACCGTAGACAAGAAGCGAACCT............................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0
.............................TAGACGAGCTGGCCAGATCTT......................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0
CCACCGGGACATCGAGGG......................................................................................................................................................................................................................................... 18 0 20 0.40 8 8 0 0 0 0 0 0 0
..............................AGACGAGCTGGCCAGATCTG......................................................................................................................................................................................................... 20 1 20 0.40 8 8 0 0 0 0 0 0 0
......................................................................................................................GCGACTGATAGACGACAAGTGGC.............................................................................................................. 23 1 5 0.40 2 0 0 0 2 0 0 0 0
....................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAA................... 20 1 20 0.35 7 6 0 1 0 0 0 0 0
............................GTAGACGAGCTGGCCAGATT........................................................................................................................................................................................................... 20 2 6 0.33 2 1 0 0 1 0 0 0 0
..........................TAGTAGACGAGCTGGCCAGAT............................................................................................................................................................................................................ 21 1 3 0.33 1 1 0 0 0 0 0 0 0
.........................ATGGTGGACGGGCTGGCCAG.............................................................................................................................................................................................................. 20 2 3 0.33 1 1 0 0 0 0 0 0 0
..........................TAGTAGACGAGCTGGCCAGATC........................................................................................................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0
...........................GGTAGACGAGCTGGCCAGATC........................................................................................................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0
............................GTAGACGAGCTGGCCAGA............................................................................................................................................................................................................. 18 1 3 0.33 1 1 0 0 0 0 0 0 0
.............................TAGACGAGCTGGCCAGAT............................................................................................................................................................................................................ 18 1 3 0.33 1 1 0 0 0 0 0 0 0
...........................GGTAGACGAGCTGGCCAGAT............................................................................................................................................................................................................ 20 2 3 0.33 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................TGTCGCATAACTCGGCAAACATGGCC...................................................................... 26 0 7 0.29 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................TGTCGCATAACTCGGCAAACATGG........................................................................ 24 0 7 0.29 2 2 0 0 0 0 0 0 0
........................................................................................................................................GTGGCAAATAGGGTCACGTTGTCGC.......................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0
.........................ATAGTAGGCGAGCTGGCCAG.............................................................................................................................................................................................................. 20 2 4 0.25 1 1 0 0 0 0 0 0 0
.........................ATGGTAGACGAGCTGGCCAGA............................................................................................................................................................................................................. 21 2 4 0.25 1 1 0 0 0 0 0 0 0
.........................ATAGTAGACGAGCTGGCC................................................................................................................................................................................................................ 18 1 4 0.25 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................GCCGACCGCAGACAAGACG...................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAG................... 20 0 19 0.21 4 3 0 1 0 0 0 0 0
................................................................................................................................GACGAAAAGTGGCAAATAGGGTCACGT................................................................................................ 27 0 5 0.20 1 1 0 0 0 0 0 0 0
...........................AGTGGACGAGCTGGCCAGATT........................................................................................................................................................................................................... 21 1 5 0.20 1 1 0 0 0 0 0 0 0
...........................AGTAGACGAGCTGGCCAGTT............................................................................................................................................................................................................ 20 2 5 0.20 1 1 0 0 0 0 0 0 0
..........................TAGTAGACGAGCTGGCCAGT............................................................................................................................................................................................................. 20 2 5 0.20 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................TAGAGCTCTGCAGGCTGGGCA.......................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0
....................................GCTGGCCAGATCTGGTAC..................................................................................................................................................................................................... 18 0 6 0.17 1 0 0 0 0 0 0 1 0
.................................CGAGCTGGCCAGATCTGGT....................................................................................................................................................................................................... 19 0 6 0.17 1 1 0 0 0 0 0 0 0
.............................TAGACGAGCTGGCCAGATT........................................................................................................................................................................................................... 19 2 6 0.17 1 0 0 1 0 0 0 0 0
...........................AGTAGACGAGCTGGCCAGATT........................................................................................................................................................................................................... 21 2 6 0.17 1 1 0 0 0 0 0 0 0
.................................CGAGCTGGCCAGATCTGGTAA..................................................................................................................................................................................................... 21 1 6 0.17 1 1 0 0 0 0 0 0 0
............................................................................................................................................................GTCGCATAACTCGACAAACATGGC....................................................................... 24 1 7 0.14 1 1 0 0 0 0 0 0 0
..................CAAGGGGATGGTGGACGA....................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................TGTCGCATAACTCGGCAAACATGGC....................................................................... 25 0 7 0.14 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................TCGCATAACTCGGCAAACATGGCC...................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................TCGCATAACTCGGCAAACATGGC....................................................................... 23 0 8 0.13 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................TAACTCGGCAAACATGGCC...................................................................... 19 0 9 0.11 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................GAGCTCTGCAAACTAGGCAG......................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGAGCTCTGCAAACTAGGC........................... 19 0 20 0.10 2 1 0 0 0 0 0 0 1
...............................GACGAGCTGGCCAGATCTG......................................................................................................................................................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTGCAAACTAGGCAGGGAAAG................... 21 0 19 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAGT.................. 21 1 19 0.05 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................CTGCAAACTAGGTAGGGAAAG................... 21 1 19 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................CAAACATGGCCGACCGTGGAC............................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0
CCACCGGGACATCGAGGGCA....................................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0
................................ACGAGCTGGCCAGATCTGG........................................................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................GACGAGCTGGCCAGATCTGG........................................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GAGCTCTGCAATCTAGGCAGG........................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGAGCTCTGCAAACTAGGCAT......................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAA.................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
.CACCGGGACATCGAGGGC........................................................................................................................................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................GTATAGTAGACGAGCTGGCCA............................................................................................................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0 0
.CACCGGGACATCGAGGGCA....................................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................GTATAGTAGACGAGCTGGCC................................................................................................................................................................................................................ 20 2 20 0.05 1 1 0 0 0 0 0 0 0
CCACCGGGACATCGAGGGCAA...................................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGCAAACTAGGCAGGGAAAA................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0
CCACCGGGACATCGAGGGC........................................................................................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................GTATAGTAGACGAGCTGGC................................................................................................................................................................................................................. 19 2 20 0.05 1 1 0 0 0 0 0 0 0
.......................GTATAGTAGACGAGCTGG.................................................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0 0
..............................GGACGAGCTGGCCAGATCTG......................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0
CCACCGGGACATCGAGGT......................................................................................................................................................................................................................................... 18 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

GGTGGCCCTGTAGCTCCCGTTCCCGTATCACCTGCTCGACCGGTCTAGACCATGATGGAGGGAAAAGTTTCTCGAGTACATTCGAGGGGACATTCGAGTAGTATTTAGTCGTTATGTTCGCTGACTATCTGCTTTTCACCGTTTATCCCAGTGCAACAGCGTATTGAGCCGTTTGTACCGGCTGGCATCTGTTCTTCGCTTGGAATCTCGAGACGTTTGATCCGTCCCTTTCTACATCGCGTCAGTATGCC
**********************************************************************.......................(((((.(((((((.......))))).)).)))))**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 GSM343916
embryo
 M062
head
 M059
embryo
 M022
male body
.........................................................................................................................................................................CGTTTGTACCGGCTGGCATCTGT........................................................... 23 0 2 4.50 9 3 4 2 0 0 0 0
GGTGGCCCTGTAGCTCCCGTT...................................................................................................................................................................................................................................... 21 0 20 2.70 54 54 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTCCCTTTCTACATCGCGTCAGT..... 23 0 2 2.50 5 5 0 0 0 0 0 0
GGTGGCCCTGTAGCTCCCGT....................................................................................................................................................................................................................................... 20 0 20 2.20 44 44 0 0 0 0 0 0
.........................................................................................................................................................................CGTTTGTACCGGCTGGCATCTGTT.......................................................... 24 0 2 2.00 4 3 0 1 0 0 0 0
..............................................................................................................................................TTATCCCAGTGCAACAGCGTAT....................................................................................... 22 0 2 2.00 4 3 1 0 0 0 0 0
.............................................................................................................................................................................................................................CCGTCCCTTTCTACATCGCGTCAGT..... 25 0 2 2.00 4 4 0 0 0 0 0 0
....................................................................................................................................................................TGAGCCGTTTGTACCGGCTGGCATCTGT........................................................... 28 0 2 1.50 3 3 0 0 0 0 0 0
............................................................................................................TCGTTATGTTCGCTGACTATCTGC....................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................TTATGTTCGCTGACTATCTGCTT..................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
...............CCCGTTCCCGTATCACCTGCTCGA.................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................TGAGCCGTTTGTACCGGCTGGCAT............................................................... 24 0 2 1.00 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGTCCCTTTCTACATCGCGTCAGT..... 24 0 2 1.00 2 2 0 0 0 0 0 0
.........GTAGCTCCCGTTCCCGTATCACCT.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................AGTACATTCGAGGGGACATTCGAG......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................CCCAGTGCAACAGCGTATTGAGCCGT............................................................................... 26 0 2 1.00 2 2 0 0 0 0 0 0
.....................................................................................................................TCGCTGACTATCTGCTTTTCACCGT............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................GTTTGTACCGGCTGGCATCTGT........................................................... 22 0 2 1.00 2 2 0 0 0 0 0 0
.............................................................................................................CGTTATGTTCGCTGACTATCTGCT...................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TTGATCCGTCCCTTTCTACATCGCGT......... 26 0 2 1.00 2 2 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGTCCCTTTCTACATCGCGTCAGT..... 26 1 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................................................................................AGCCGTTTGTACCGGCTGGCATCTGT........................................................... 26 0 2 1.00 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................................GGAATCTCGAGACGTTTGAT.............................. 20 0 2 1.00 2 2 0 0 0 0 0 0
.....................................................................................................................................................................GAGCCGTTTGTACCGGCTGGCATCTGTT.......................................................... 28 0 2 1.00 2 2 0 0 0 0 0 0
................................................................................................................................................ATCCCAGTGCAACAGCGTAT....................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................CCGTTTGTACCGGCTGGCATCTGT........................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................CTTGGAATCTCGAGACGTTTGAT.............................. 23 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................CCGTTTGTACCGGCTGGCATCTGTT.......................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................................................................................TTTGTACCGGCTGGCATCTGT........................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................TCCCTTTCTACATCGCGTCAGT..... 22 0 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................CGCTTGGAATCTCGAGACGT................................... 20 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................TCGTTTGTACCGGCTGGCATCTGT........................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................................................................CAACAGCGTATTGAGCCGTTT............................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TTGGAATCTCGAGACGTTTGATCCGT.......................... 26 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................GGAAATCTCGAGACGTTTGATCCG........................... 24 2 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................................................................................CGTTTGTACCGGCTGGCATCTCT........................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................................................................................GTTTGTACCGGCTGGCATCTG............................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................................................................GAGCCGTTTGTACCGGCTGGCATCTG............................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................................................CGTTTATCCCAGTGCAACAGCGTAT....................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
.............................................TCGACCATGCTGGAGTGAA........................................................................................................................................................................................... 19 3 4 0.50 2 2 0 0 0 0 0 0
..........................................................................................................................................................................GTTTGTACCGGCTGGCATCTGTT.......................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................CGCTTGGAATCTCGAGACGTTTGA............................... 24 0 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................................................................................................GTACCGGCTGGCATCTGTT.......................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGTCCCTTTCTACATCGCGTCAG...... 23 0 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................................................AGCCGTTTGTACCGGCTGGCATCTGTT.......................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................CTGCTTTTCACCGTTTATCCCAGTGC................................................................................................. 26 0 5 0.40 2 2 0 0 0 0 0 0
.GTGGCCCTGTAGCTCCCGT....................................................................................................................................................................................................................................... 19 0 20 0.40 8 8 0 0 0 0 0 0
..............................CCTGCTCGACCGGTCTAGAC......................................................................................................................................................................................................... 20 0 20 0.35 7 7 0 0 0 0 0 0
.............................CCCTGCTCGACCGGTCTAGACCAT...................................................................................................................................................................................................... 24 1 6 0.33 2 2 0 0 0 0 0 0
........................................................................................................................CAGGCTATCTGCTTTTCACG............................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0
.................................GCTCGACCGGTCTAGACCAT...................................................................................................................................................................................................... 20 0 6 0.33 2 2 0 0 0 0 0 0
..............................................................................................................................................TTATCCCAGTGCAACAGCGT......................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................................GTTTATCCCAGTGCAACAGCGT......................................................................................... 22 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................................CCGTTTATCCCAGTGCAACAGC........................................................................................... 22 0 4 0.25 1 1 0 0 0 0 0 0
................................................................................................................................CTGCTTTTCACCGTTTATCCCAGT................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0
.................................GCTCGACCGGTCTAGACCATGAT................................................................................................................................................................................................... 23 0 5 0.20 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TTGGAGTCTCGAGACGTTTGAT.............................. 22 1 20 0.20 4 4 0 0 0 0 0 0
................................TGCTCGACCGGTCTAGACCATGAT................................................................................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0
...............................CTGCTCGACCGGTCTAGACCAT...................................................................................................................................................................................................... 22 0 6 0.17 1 1 0 0 0 0 0 0
................................TGCTCGACCGGTCTAGACCAT...................................................................................................................................................................................................... 21 0 6 0.17 1 1 0 0 0 0 0 0
................................TGCTCGACCGGTCTAGACCA....................................................................................................................................................................................................... 20 0 6 0.17 1 1 0 0 0 0 0 0
............................CCCCTGCTCGACCGGTCTAGACCA....................................................................................................................................................................................................... 24 1 6 0.17 1 1 0 0 0 0 0 0
................................AGCTCGACCGGTCTAGACCAT...................................................................................................................................................................................................... 21 1 6 0.17 1 1 0 0 0 0 0 0
..................................CTCGACCGGTCTAGACCAT...................................................................................................................................................................................................... 19 0 6 0.17 1 1 0 0 0 0 0 0
..............................CCTGCTCGACCGGTCTAGA.......................................................................................................................................................................................................... 19 0 20 0.15 3 3 0 0 0 0 0 0
..TGGCCCTGTAGCTCCCGT....................................................................................................................................................................................................................................... 18 0 20 0.15 3 3 0 0 0 0 0 0
.................................................................................................................................................................................CAGGCTGGTATCTGTTCTTCGCTT.................................................. 24 2 7 0.14 1 0 0 0 0 0 1 0
............................................................................................................................................................CAGCGTATTGAGCCGTTTGTACCGG...................................................................... 25 0 7 0.14 1 0 0 0 1 0 0 0
...........................................................GCGAAAAGTTTCTCGCGTAG............................................................................................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0 0
.......CTGTCGCTCCCGTTTCCCTAT............................................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 1 0 0 0
....................................AGACCGGTCGTGACCATGATG.................................................................................................................................................................................................. 21 3 10 0.10 1 0 0 0 0 0 0 1
....................................................................................................................................................................TGAGCCGTTTGTACCGGCTGGCACCTGT........................................................... 28 1 20 0.10 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................................................CCGTCCCTTTCCACATCGCGTCAGT..... 25 1 15 0.07 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTCCCTTTCCACATCGCGTCAG...... 22 1 18 0.06 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................CGAGACGTTTGATCCGTCCCTTTC................... 24 0 18 0.06 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................CCCTTTCCACATCGCGTCAGT..... 21 1 18 0.06 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CTCGAGACGTTTGATCCGTCCCTT..................... 24 0 19 0.05 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTCGAGACGTTTGATCCGTCCCTTA.................... 26 1 19 0.05 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTCGAGACGTTTGATCCGTCCCT...................... 24 0 19 0.05 1 1 0 0 0 0 0 0
TGTGGCCCTGTAGCTCCCGTT...................................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TCGAGACGTTTGATCCATCCCTTT.................... 24 1 20 0.05 1 0 0 1 0 0 0 0
TTTGGCCCTGTAGCTCCCGTT...................................................................................................................................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0
AGTGGCCCTGTAGCTCCCGTT...................................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0
..............................TCTGCTCGACCGGTCTAGA.......................................................................................................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0
.ATGGCCCTGTAGCTCCCGT....................................................................................................................................................................................................................................... 19 1 20 0.05 1 0 0 0 1 0 0 0
..............................ACTGCTCGACCGGTCTAG........................................................................................................................................................................................................... 18 1 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................................................................GTTTGTACCGGCTGGCACCTGT........................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GGTTTCTCTAGACGTTTGATCCGT.......................... 24 3 20 0.05 1 0 0 0 1 0 0 0
..................................................................................................TAAGATTTAGTTGTTATGTT..................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0
...GGCCTTGTAGCTCCCGTT...................................................................................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:799001-799251 + dps_2607 C------------------CACCGGGACATCGAGGGCAAGGGCATAGTGGACGAGCTGGCCAGATCTGGTACTACCTCCCTTTTCAAAG-------AGCTCATGTAAGCT----------CCCCTGTAAGCTCATCATAAATCAGCAATACAAGCGAC-TGATAGACGAAAAGTGGCAAATAGGGTCACGTTGTCGCATAACTCGGCAAACATGGCCGACCGTAGACAAGA-AGCGAACCTTAGAGCTCTGCAAACTAGGCAGGGAAAGATGTAGCGCAGTCATACGG
droPer2 scaffold_30:404540-404806 + C------------------CACCGGGACATCGAGGGCAACTGCATAGCGGACGAGCTGGCCAGATCTGGTACTACGACCTCCCTTCTCAAAGATAAGGAGGATATTTGGATGCCTATGGCCACCTGTAAGCTCATCAAAAATCAGCAATACAAGCGAC-TGACAGACGAAAAGTGGCAAATAGGGTCACGTTGTCGCATAACTCGGCAAACATGGCCGACCGTAGACAAGA-AGCGAACCTTAGAGCTCTGCAAACTAGGCAGGGAAAGATGTAGCGCAGTCATACG-
droWil2 scf2_1100000004389:19190-19193 + A------------------CGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15111:6885-7152 - C------------------CACCAGGACATTGAAGGCAACTGTAAAGCCGATGAGCTAGCTAGGAAAGGTACTATACTACCACTCCTCGCGCTTAAGAAAGGTATAAGTATGCCTCTAGCTACCTGTAAGCTCAACATCAAGGAGGAGTACAGGCGCA-GGTCATGCAGCAAATGGCAAAGTGCCACCTGTGCCCGCATAGCACACCAGACATGGCCAATTCTTAACTCCA-AGCGCAGCAGAAAGCTGTGCAGTCTAAGTTGGACCAACTGTTCTGCAGTGATCCGG
droAna3 scaffold_12948:81195-81462 + T------------------CACAGGGACCACGAGGGAAACTGTGCTGCAGATGAACTAGCTAGGGCAGGGACTACCAACCCTCTCCTACTGGAGAAAGAACTTGTAGGCATACCGTTGGCTACTTGCAGGCTAGAGTGCAGGGAGTTTTTCGACCTGG-CAGCCAATAGGAAATGGAGTAATCTCCAGACCTGTAGAACATCACGTCTGATCTGGCCGACACGCTCTCAGA-AAAGATCGGCGAGACTTATTGCTCTCACCAGACCGGAATGCAGCCTAGCGATTGGG
droBip1 scf7180000396390:30719-30828 - C------------------CACATGGACATCACAGGCAACTGCATAGCAGACGAACTGGCTCGCACAGGTACAACCACACCACTCCAGTCTAAAATGGAGCGTACAGGTATACCTATAGCCTCTTCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000301546:4554-4599 + A------------------CACAATGACATAGACGGAAACGAGAAAGCAGACGAGCTGGCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000452758:9115-9124 - AGACCCATGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490380:92689-92957 - T------------------CACCGAAAAATTGCAGGCAATTGTATTGCAGATGAGTTGGCCAGGCATGGCACTACCGTTCCTCTCCTTCCGGACAAGGAGAATATTGGTATGCCAATGGCCACCTGCAAGCTAAACATTAAAAACAAATAAAAAGAACTTGAGAACCTAGCATTGGACACATGTAAGACATTGTCGCATCTCTCGCCAGACATGGCCAATTATTGATGCGA-AGACAACTTCTGAACTTCTAAAGCTAAACCGTACCGAATGCGGAATGCTAATACGA
droRho1 scf7180000776399:1424-1690 - T------------------CACCGGGATATCGTAGGCAACTGTATAGCAGACGAGCTAGCCAGGCAAGGCACCACCATACCTCTCCTTCCAGGAAAGGAGAATGTCGGCATGCCGATGGCTACTTGTAAGCTAATTATTAAAAACCACTTCAGCAAAT-TAGCCAACACTTATTGGCA-AACACACCGCAATGCCGAATCTCTCACCAGACATGGCCTGAAATAAACAATA-AGAAAACATCAGAACTACTCAATTTCAGCCGCACTGAGTGCAGCATGCTAATTCGA
droBia1 scf7180000301240:8180-8408 - C------------------CG---GGTCACCGA-----------------ACGAGATAGGCAGGC-TGGCAACATCATGGCTCTCCTTCCGGAAAAGAAGAATGTCGGCATGCTTTTAACAACTTCCAAGCTAAATAACAGAAACTATTTTAACAAAT-------TTATTAGTTCGCAGAACGCACTAGAGTGTCGTATATCTAACCAGACATGGCCTGTAATTAACAGTAAAAAACACCTCGGAACTAATCAAACTCAGCTGCACAAAGTGCGG-------------
droTak1 scf7180000415842:8251-8518 - T------------------CACCGGGACATCGTAGGCAACTGCATAGCGGATGAGTTAGCTAGGCAGGGCACCATCATGCCTCTCCTTCCAGAAAAGGAGAGTGTCGGTATGCCCATTGCAACTTGCAAGCTAAACATTAGAAATCAATTTATTAAAA-TAGCCAACACTAATTGGCAGAATGCACCAAGGTGTCGTATCACTCACCAGACATGGCCGATGATTAACAATA-AAAGAACGTCAGCACTGCTCAAACTCAGCCGCACAGAGTGTGGTATGTTAGTTAGG
droSim2 node_63373:7-292 - CTTTATATGGGTACCCGGACACAGGGACATAGAAGGCAACTGCATCGCAGATGAACTAGCTCGAGAAGGCACTACCGCGCCACTCATACAAGAGATGGAGGGCATGAGTATGCCTTTAGCCACTTGTAAACTACTACTTAGGGAAAACCTAAACCGTA-ACAAACAGACAATATGGGAAAACACCACACACTGTCGCCTAACACGCCAAATATGGCCAAAAATAAGCTTAA-AGAGAACGTCAAAACTTTTAAGATTGACCAGAGCAAACCTCAGCACTGCTATGAGA
droYak3 chr2h:709367-709623 - CCTTATATGGGTACACGGACACAGAGACATAGAAGGCAACTCCATCGCAGATGAACTAGCTCGAGAAGGCACTACCTCGCCACTCATACAAGAG-----------------------AGCCACATGTAAACTACTATGTAGGGAAAACCTAAGCCGAA-ACAAACAGACAATATGGGAAAATACCACACACTGTCGCCTAACACGCCAAATATGGCCAACAATAAGATCAA-AAAGAACGTCAAAACTCT------TGACCAGAGAAAACCATAGCACTGCTATGAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
C------------------CACCGGGACATCGAGGGCAAGGGCATAGTGGACGAGCTGGCCAGATCTGGTACTACCTCCCTTTTCAAAG-------AGCTCATGTAAGCT----------CCCCTGTAAGCTCATCATAAATCAGCAATACAAGCGAC-TGATAGACGAAAAGTGGCAAATAGGGTCACGTTGTCGCATAACTCGGCAAACATGGCCGACCGTAGACAAGA-AGCGAACCTTAGAGCTCTGCAAACTAGGCAGGGAAAGATGTAGCGCAGTCATACGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................CCGTAGACAAGA-AGCGAACCTTAGAGC.........................................2722.0040400000000
...........................................................................................................................................................................................................................CCGTAGACAAGA-AGCGAACCTTAGA...........................................2521.5030300000000
...........................................................................................................................................................................................................................CCGTAGACAAGA-AGCGAACCTTAG............................................2421.0020000000200
................................................................................................................................................................GATAGACGAAAAGTGGCAAATAGGG.......................................................................................................2511.0010100000000
...............................................................................................................................................................TGATAGACGAAAAGTGGCAA.............................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................ACCGTAGACAAGA-AGCGAACCTTAGAGC.........................................2821.0020200000000
.................................................................................................................................................................ATAGACGAAAAGTGGCAAATAGG........................................................................................................2311.0010100000000
..........................................................................................................................................................................................................................................................GCAAACTAGGCAGGGAAAGATG................2221.0020200000000
............................................................................................................................................................................................................................................................AAACTAGGCAGGGAAAGA..................1821.0020200000000
........................................................................................................................................................................................................................................................CTGCAAACTAGGCAGGGAAAGA..................2220.5010100000000
....................................................................................................................................................................................................................TGGCCGACCGTAGACAAGA-AA......................................................2120.5010100000000
....................................................................................................................................................................................................................TGGCCGACCGTAGACAAGA-AGCGAAC.................................................2620.5010100000000
..........................................................................................................................................................................................................................ACCGTAGACAAGA-AGCGAACCT...............................................2220.5010100000000
...........................................................................................................................................................................................................................CCGTAGACAAGA-AGCGAACCTTAGAG..........................................2620.5010100000000
.........................................................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAGA..................2120.5010000100000
........................................................................................................................................................................................................................................................CTGCAAACTAGGCAGGGAAAGAAA................2420.5010100000000
.......................................................................................................................................................................................................................................................TCTGCAAACTAGGCAGGGAAAGATG................2520.5010100000000
..................................................................................................................................................................................AATAGGGTCACGTTGTCGCAT.........................................................................................2120.5010000001000
...........................................................................................................................................................................................................................CCGTAGACAAGA-AGCGAACCTT..............................................2220.5010100000000
.........................................................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAGAA.................2220.5010100000000
.............................................................................................................................................................................................................................GTAGACAAGA-AGCGAACCTTAGA...........................................2320.5010100000000
.........................................................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAGATG................2320.5010100000000
....................................................................................................................................................................................TAGGGTCACGTTGTCGCATAACTCGGC.................................................................................2720.5010100000000
....................................................................................................................................................................................TAGGGTCACGTTGTCGCATAACTCGGCA................................................................................2820.5010100000000
.......................................................................................................................................................................................................................................................TCTGCAAACTAGGCAGGGAAAGATGTT..............2720.5010100000000
........................................................................................................................................................................................................................................................CTGCAAACTAGGCAGGGAAAGAT.................2320.5010100000000
...........................................................................................................................................................................................................................CCGTAGACAAGA-AGCGAACCTTA.............................................2320.5010100000000
..........................................................................................................................................................................................................................ACCGTAGACAAGA-AGCGAACCTT..............................................2320.5010100000000
.......................................................................................................................................................................................GGTCACGTTGTCGCATAACTCGGCA................................................................................2520.5010100000000
.........................................................................................................................................................................................................................GACCGTAGACAAGA-AGCGAACCT...............................................2320.5010100000000
C------------------CACCGGGACATCGAGGG............................................................................................................................................................................................................................................................18200.4080800000000
.........................................................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAA...................20200.3570600001000
...............................................................................................................................................................................................TGTCGCATAACTCGGCAAACATGGCC.......................................................................2670.2920200000000
...............................................................................................................................................................................................TGTCGCATAACTCGGCAAACATGG.........................................................................2470.2920200000000
............................................................................................................................................................................GTGGCAAATAGGGTCACGTTGTCGC...........................................................................................2540.2510100000000
.........................................................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAG...................20190.2140300001000
....................................................................................................................................................................GACGAAAAGTGGCAAATAGGGTCACGT.................................................................................................2750.2010100000000
.............................................AGTGGACGAGCTGGCCAGATT..............................................................................................................................................................................................................................2150.2010100000000
......................................................GCTGGCCAGATCTGGTAC........................................................................................................................................................................................................................1860.1710010000000
...................................................CGAGCTGGCCAGATCTGGT..........................................................................................................................................................................................................................1960.1710100000000
...................................................CGAGCTGGCCAGATCTGGTAA........................................................................................................................................................................................................................2160.1710100000000
...............................................................................................................................................................................................TGTCGCATAACTCGGCAAACATGGC........................................................................2570.1410100000000
.................................................................................................................................................................................................TCGCATAACTCGGCAAACATGGCC.......................................................................2480.1310100000000
.................................................................................................................................................................................................TCGCATAACTCGGCAAACATGGC........................................................................2380.1310100000000
......................................................................................................................................................................................................TAACTCGGCAAACATGGCC.......................................................................1990.1110010000000
...................................................................................................................................................................................................................................................GAGCTCTGCAAACTAGGCAG.........................20200.1020200000000
..................................................................................................................................................................................................................................................AGAGCTCTGCAAACTAGGC...........................19200.1020100000001
.................................................GACGAGCTGGCCAGATCTG............................................................................................................................................................................................................................19200.1020200000000
........................................................................................................................................................................................................................................................CTGCAAACTAGGCAGGGAAAG...................21190.0510100000000
.........................................................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAGT..................21190.0510010000000
C------------------CACCGGGACATCGAGGGCA..........................................................................................................................................................................................................................................................20200.0510100000000
..................................................ACGAGCTGGCCAGATCTGG...........................................................................................................................................................................................................................19200.0510100000000
.................................................GACGAGCTGGCCAGATCTGG...........................................................................................................................................................................................................................20200.0510100000000
..................................................................................................................................................................................................................................................AGAGCTCTGCAAACTAGGCAT.........................21200.0510000000010
.........................................................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAA....................19200.0510100000000
...................CACCGGGACATCGAGGGC...........................................................................................................................................................................................................................................................18200.0510100000000
...................CACCGGGACATCGAGGGCA..........................................................................................................................................................................................................................................................19200.0510100000000
C------------------CACCGGGACATCGAGGGCAA.........................................................................................................................................................................................................................................................21200.0510100000000
.......................................................................................................................................................................................................................................................TCTGCAAACTAGGCAGGGAAAA...................22200.0510100000000
C------------------CACCGGGACATCGAGGGC...........................................................................................................................................................................................................................................................19200.0510100000000
................................................GGACGAGCTGGCCAGATCTG............................................................................................................................................................................................................................20200.0510100000000
C------------------CACCGGGACATCGAGGT............................................................................................................................................................................................................................................................18200.0510100000000
droPer2
C------------------CACCGGGACATCGAGGGCAACTGCATAGCGGACGAGCTGGCCAGATCTGGTACTACGACCTCCCTTCTCAAAGATAAGGAGGATATTTGGATGCCTATGGCCACCTGTAAGCTCATCAAAAATCAGCAATACAAGCGAC-TGACAGACGAAAAGTGGCAAATAGGGTCACGTTGTCGCATAACTCGGCAAACATGGCCGACCGTAGACAAGA-AGCGAACCTTAGAGCTCTGCAAACTAGGCAGGGAAAGATGTAGCGCAGTCATACG-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................TACAAGCGAC-TGACAGACGAAAAGTGG................................................................................................................27100.808080000
..................................GGCAACTGCATAGCGGACGAGCTG......................................................................................................................................................................................................................................24200.60120110001
....................................................................................................................................................TACAAGCGAC-TGACAGACGAAAAGT..................................................................................................................25100.404220000
....................................................................................................................................................TACAAGCGAC-TGACAGACGAAAAGTGGT...............................................................................................................28100.404400000
..............................................................................................AAGGAGGATATTTGGATGCCTATG..........................................................................................................................................................................2450.402020000
......................................................................................................................................................................CGAAAAGTGGCAAATAGGGTCACGTTT...............................................................................................2780.383000003
....................................................................................................................................................TACAAGCGAC-TGACAGACGA.......................................................................................................................20100.303210000
........................................................................................................................................................AGCGAC-TGACAGACGAAAAGTGGC...............................................................................................................24100.303210000
..................................GGCAACTGCATAGCGGACGAGCTGG.....................................................................................................................................................................................................................................25200.204031000
....................................................................................................................................................TACAAGCGAC-TGACAGACGAAAAG...................................................................................................................24100.202020000
.........................................................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAA....................19200.204040000
......................................................................................................................................................CAAGCGAC-TGACAGACGAAAAGTGGC...............................................................................................................26100.202020000
..............................................................................................AAGGAGGATATTTGGATGCCTATGGC........................................................................................................................................................................2650.201010000
..............................................................................................AAGGAGGATATTTGGATGCCTATGG.........................................................................................................................................................................2550.201010000
...........................................................................................................................................................................................................................CCGTAGACAAGA-AGCGAACCTTAG............................................2460.171010000
..........................................................................................................................................................................................................................ACCGTAGACAAGA-AGCGAACCT...............................................2260.171010000
..................................GGCAACTGCATAGCGGACGAGCT.......................................................................................................................................................................................................................................23200.153030000
...............................................................................................................................................................TGACAGACGAAAAGTGGCAAATAGGGT......................................................................................................2770.141000001
...............................................................................................................................................AGCAATACAAGCGAC-TGACAGACG........................................................................................................................2470.141010000
...................................................................................................................................................ATACAAGCGAC-TGACAGACGAAAAGTGG................................................................................................................2880.131010000
...............................................................................................................................................................................................TGTCGCATAACTCGGCAAACATGGC........................................................................25190.112020000
..................................GGCAACTGCATAGCGGACGAGCTGGC....................................................................................................................................................................................................................................26200.102020000
....................................................................................................................................................TACAAGCGAC-TGACAGACGAAAAGTG.................................................................................................................26100.101010000
.........................................................................................................................................................................................................................................................TGCAAACTAGGCAGGGAAAA...................20200.102020000
....................................................................................................................................................TACAAGCGAC-TGACAGACGAAAAGTGGC...............................................................................................................28100.101100000
.....................................................................................................................................................ACAAGCGAC-TGACAGACGAAAAGTGGC...............................................................................................................27100.101010000
.................................GGGCAACTGCATAGCGGACG...........................................................................................................................................................................................................................................20200.102000002
.......................................................CTGGCCAGATCTGGTACTACG....................................................................................................................................................................................................................21200.102020000
.................................................................................................................................................................................................TCGCATAACTCGGCAAACATGGC........................................................................23190.051010000
....................................CAACTGCATAGCGGACGAGCTGGC....................................................................................................................................................................................................................................24200.051010000
.......................................................................................................................................................................................................................................................TCTGCAAACTAGGCAGGGAAA....................21200.051010000
..................................GGCAACTGCATAGCGGACGAGCTT......................................................................................................................................................................................................................................24200.051010000
..................................GGCAACTGCATAGCGGACGAGCTGT.....................................................................................................................................................................................................................................25200.051010000
droWil2
A------------------CGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droGri2
C------------------CACCAGGACATTGAAGGCAACTGTAAAGCCGATGAGCTAGCTAGGAAAGGTACTATACTACCACTCCTCGCGCTTAAGAAAGGTATAAGTATGCCTCTAGCTACCTGTAAGCTCAACATCAAGGAGGAGTACAGGCGCA-GGTCATGCAGCAAATGGCAAAGTGCCACCTGTGCCCGCATAGCACACCAGACATGGCCAATTCTTAACTCCA-AGCGCAGCAGAAAGCTGTGCAGTCTAAGTTGGACCAACTGTTCTGCAGTGATCCGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................TGAGCTAGCTAGGAAAGGTAC........................................................................................................................................................................................................................21200.05101
droAna3
T------------------CACAGGGACCACGAGGGAAACTGTGCTGCAGATGAACTAGCTAGGGCAGGGACTACCAACCCTCTCCTACTGGAGAAAGAACTTGTAGGCATACCGTTGGCTACTTGCAGGCTAGAGTGCAGGGAGTTTTTCGACCTGG-CAGCCAATAGGAAATGGAGTAATCTCCAGACCTGTAGAACATCACGTCTGATCTGGCCGACACGCTCTCAGA-AAAGATCGGCGAGACTTATTGCTCTCACCAGACCGGAATGCAGCCTAGCGATTGGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................AGAACTTGTAGGCATACCGTTGG.........................................................................................................................................................................2312.002200000
.......................................................................................................GTAGGCATACCGTTGGCTACTTG..................................................................................................................................................................2311.001100000
.................................................................................................GAACTTGTAGGCATACCGTTGG.........................................................................................................................................................................2211.001100000
................................................................................................AGAACTTGTAGGCATACCGTTGGC........................................................................................................................................................................2411.001100000
.................................................................................................GAACTTGTAGGCATACCGTTGGCTAC.....................................................................................................................................................................2611.001100000
....................................................................................................CTTGTAGGCATACCGTTGGCTACT....................................................................................................................................................................2411.001100000
....................................................................................................CTTGTAGGCATACCGTTGGCTACTT...................................................................................................................................................................2511.001100000
.........................................................................................................................ACTTGCAGGCTAGAGTGCAGG..................................................................................................................................................2111.001100000
.................................................GATGAACTAGCTAGGGCAGGGA.........................................................................................................................................................................................................................22200.95191720000
........................................................................................................................................................................................................................................................................CCGGAATGCAGCCTAGCGATTGG.23200.60121110000
..............................................................................................................................................................................................CTGTAGAACATCACGTCTGATCTGG.........................................................................25200.357700000
T------------------CACAGGGACCACGAGGGAAACT.......................................................................................................................................................................................................................................................23200.357700000
.................................................................................................................................................................................................TAGAACATCACGTCTGATCTGGCCGA.....................................................................26200.306600000
.....................................................................................................................................................................................TCTCCAGACCTGTAGAACATCACGTC.................................................................................26200.306060000
...............................................................................................................................................................................................TGTAGAACATCACGTCTGATCTGG.........................................................................24200.255500000
.............................................................................................................................................................................................................................CGCTCTCAGA-AAAGATCGGCGAGA..........................................24200.255500000
................................................AGATGAACTAGCTAGGGCAGGGA.........................................................................................................................................................................................................................23200.255500000
.................................................................................................................................................................................................TAGAACATCACGTCTGATCTGGC........................................................................23200.153030000
T------------------CACAGGGACCACGAGGGAAAC........................................................................................................................................................................................................................................................22200.153201000
.................................................................................................................................................................................................TAGAACATCACGTCTGATCTGGCCG......................................................................25200.153300000
...............................................................................................................................................................................................TGTAGAACATCACGTCTGATCTGGCC.......................................................................26200.153120000
...........................................................................................................................................................................................GACCTGTAGAACATCACGTCTGA..............................................................................23200.153030000
...............................................................................................................................................................................................TGTAGAACATCACGTCTGATCTGGC........................................................................25200.102200000
...............................................................................................................................................AGTTTTTCGACCTGG-CAGCCAATAGG......................................................................................................................26200.102200000
..............................................................................................................................................................................................CTGTAGAACATCACGTCTGATCTGGC........................................................................26200.102200000
..................................................................................................................................................................................................................................TCAGA-AAAGATCGGCGAGACT........................................21200.102200000
................................................................................................................................................................................................GTAGAACATCACGTCTGATCTGGC........................................................................24200.102110000
..........................................................................................................................................................................................AGACCTGTAGAACATCACGTCTGA..............................................................................24200.102020000
..................................................................................................................................................................................TAATCTCCAGACCTGTAGAACATCACG...................................................................................27200.102200000
............................................................................................................................................................................................ACCTGTAGAACATCACGTCTGATCTGG.........................................................................27200.102200000
............................................................................................................................................................................................ACCTGTAGAACATCACGTCTGA..............................................................................22200.102020000
.......................................................................................................................................................................AGGAAATGGAGTAATCTCCAGACC.................................................................................................24200.102020000
........................................................................................................................................................................................................................................................................CCGGAATGCAGCCTAGCGATTG..22200.102200000
.................................................GATGAACTAGCTAGGGCAGGG..........................................................................................................................................................................................................................21200.102011000
..............................................................................................................................................................................................CTGTAGAACATCACGTCTGATCTGGCC.......................................................................27200.102020000
.............................................................................................................................................................................................CCTGTAGAACATCACGTCTGATC............................................................................23200.102200000
....................................................................................................................................................................................................................................................................CAGACCGGAATGCAGCCTAGCGATTGG.27120.081100000
...................................................................................................................................................................................................................................................AGACTTATTGCTCTCACCAGACCGG....................25120.081100000
.....................................................................................................................................................................................................................................................ACTTATTGCTCTCACCAGACCGGAA..................25120.081100000
.................................................................................................................................................................................................................................................................CACCAGACCGGAATGCAGCCTAGCGAT....27130.081010000
............................................................................................................................................................................................................................................................GCTCTCACCAGACCGGAATGCAGCCT..........26130.081100000
..............................................................................................................................................................................................................................................................TCTCACCAGACCGGAATGCAGC............22130.081010000
................................................................................................................................................................................................................................................................TCACCAGACCGGAATGCAGCCTAGC.......25130.081100000
...........................................................................................................................................................................................................................................................TGCTCTCACCAGACCGGAATGCAGCCT..........27130.081100000
..............................................................................................................................................................................................................................................................TCTCACCAGACCGGAATGCAGCCTAGC.......27130.081100000
..............................................................................................................................................................................................................................................................TCTCACCAGACCGGAATGCAGCCTAGCGA.....29130.081100000
.......................................................................................................................................................................................................................................................TTATTGCTCTCACCAGACCGGAATG................25130.081100000
...........................................................................................................................................................................................................................................................TGCTCTCACCAGACCGGAATGCAGCC...........26130.081000010
....................................................................................................................................................................................................................................................................CAGACCGGAATGCAGCCTAGCG......22140.071100000
...................................................................................................................................................................................................................................................................CCAGACCGGAATGCAGCCTAGCGA.....24140.071100000
............................................................................................................................................................................................ACCTGTAGAACATCACGTCTG...............................................................................21200.051000001
..............................................................................................................................................................................................................CTGATCTGGCCGACACGCTCT.............................................................21200.051100000
....................................................GAACTAGCTAGGGCAGGGACTACCAA..................................................................................................................................................................................................................26200.051100000
.................................................................................................................................................................................................TAGAACATCACGTCTGATCTGGCC.......................................................................24200.051010000
...................................................................................................................................................................................................................CTGGCCGACACGCTCTCAGA-AAAGAT..................................................26200.051010000
...........................................................................................................................................................................................GACCTGTAGAACATCACGTCT................................................................................21200.051100000
.................................................................................................................................................................................................TAGAACATCACGTCTGATCTGGCCGACA...................................................................28200.051100000
...................................................................................................................................................................CAATAGGAAATGGAGTAATCTC.......................................................................................................22200.051010000
...............................................................................................................................................................................................TGTAGAACATCACGTCTGATCTGGT........................................................................25200.051100000
............................................................................................................................................................................................ACCTGTAGAACATCACGTCTGATC............................................................................24200.051010000
...............................................................................................................................................................................................TGTAGAACATCACGTCTGATCTGGCCGT.....................................................................28200.051100000
.............................................................................................................................................GGAGTTTTTCGACCTGG-CAGCCA...........................................................................................................................23200.051100000
..................................................ATGAACTAGCTAGGGCAGGG..........................................................................................................................................................................................................................20200.051100000
...................................................................................................................................................................................................GAACATCACGTCTGATCTGGCCGAC....................................................................25200.051100000
.....................................................AACTAGCTAGGGCAGGGACTACCA...................................................................................................................................................................................................................24200.051100000
........................................................................................................................................................................................................................................................................CCGGAATGCAGCCTAGCGATT...21200.051100000
..............................................................................................................................................................................................CTGTAGAACATCACGTCTGATC............................................................................22200.051010000
.................................................................................................................................................................................................TAGAACATCACGTCTGATCTGGA........................................................................23200.051100000
...............................................CAGATGAACTAGCTAGGGCAGGGAC........................................................................................................................................................................................................................25200.051100000
...........................CCACGAGGGAAACTGTGCTGCAGATGA..........................................................................................................................................................................................................................................27200.051100000
................................................................................................................................................................................................................................TCTCAGA-AAAGATCGGCGAGACTTAT.....................................26200.051000010
....................................................................................................................................................................................ATCTCCAGACCTGTAGAACATCACG...................................................................................25200.051100000
...........................................GCTGCAGATGAACTAGCTAGGGCAGG...........................................................................................................................................................................................................................26200.051100000
...................................................................................................................................................................................AATCTCCAGACCTGTAGAACATCACG...................................................................................26200.051100000
...................................................................................................................................................................................AATCTCCAGACCTGTAGAACATCACGTC.................................................................................28200.051100000
..................................................................................................................................................................................................AGAACATCACGTCTGATCTGGCCG......................................................................24200.051100000
...................................................TGAACTAGCTAGGGCAGGGACTACCAAC.................................................................................................................................................................................................................28200.051000001
.................................................................................................................................................................................................................................................CGAGACTTATTGCTCTCACCAGACC......................25200.051100000
..........................................................................................................................................................................................AGACCTGTAGAACATCACGTCTGATC............................................................................26200.051100000
......................................................................................................................................................................................................................................................................GACCGGAATGCAGCCTAGCGATTG..24200.051100000
...........................................................................................................................................................................................GACCTGTAGAACATCACGTCTGATC............................................................................25200.051100000
......................................................................................................................................................................................................CATCACGTCTGATCTGGCCGACAC..................................................................24200.051010000
....................................................................................................................................................................................................................................AGA-AAAGATCGGCGAGACTT.......................................20200.051100000
T------------------CACAGGGACCACGAGGGAAACTG......................................................................................................................................................................................................................................................24200.051010000
T------------------CACAGGGACCACGAGGGAA..........................................................................................................................................................................................................................................................20200.051010000
................................................AGATGAACTAGCTAGGGCAGGGAC........................................................................................................................................................................................................................24200.051100000
............................................................................................................................................................................................ACCTGTAGAACATCACGTCTGATCTG..........................................................................26200.051100000
...................................................TGAACTAGCTAGGGCAGGGACTACCA...................................................................................................................................................................................................................26200.051100000
..........................................................................................................................................................................................AGACCTGTAGAACATCACGTCTGATCTG..........................................................................28200.051100000
............................................................................................................................................................................................ACCTGTAGAACATCACGTCTGATCTGGC........................................................................28200.051100000
....................................................................................................................................................................................................AACATCACGTCTGATCTGGCC.......................................................................21200.051100000
............................................CTGCAGATGAACTAGCTAGGGCA.............................................................................................................................................................................................................................23200.051100000
........................................................................................................................................................................................................TCACGTCTGATCTGGCCGACA...................................................................21200.051010000
.....................................................................................................................................................................................................ACATCACGTCTGATCTGGC........................................................................19200.051100000
...............................................................................................................................................................................................TGTAGAACATCACGTCTGATCTGGCCGA.....................................................................28200.051100000
................................................................................................................................................................................................GTAGAACATCACGTCTGATCTGGCCGA.....................................................................27200.051100000
...............................................................................................................................................................................................TGTAGAACATCACGTCTGATC............................................................................21200.051010000
.............................................TGCAGATGAACTAGCTAGGGCAGG...........................................................................................................................................................................................................................24200.051010000
..........................................................................................................................................................................................AGACCTGTAGAACATCACGTCTGAT.............................................................................25200.051010000
...............................GAGGGAAACTGTGCTGCA...............................................................................................................................................................................................................................................18200.051100000
.......................................................................................................................................................................................................................CCGACACGCTCTCAGA-AAAGATCGGC..............................................26200.051100000
droBip1
C------------------CACATGGACATCACAGGCAACTGCATAGCAGACGAACTGGCTCGCACAGGTACAACCACACCACTCCAGTCTAAAATGGAGCGTACAGGTATACCTATAGCCTCTTCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
A------------------CACAATGACATAGACGGAAACGAGAAAGCAGACGAGCTGGCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGACCCATGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T------------------CACCGAAAAATTGCAGGCAATTGTATTGCAGATGAGTTGGCCAGGCATGGCACTACCGTTCCTCTCCTTCCGGACAAGGAGAATATTGGTATGCCAATGGCCACCTGCAAGCTAAACATTAAAAACAAATAAAAAGAACTTGAGAACCTAGCATTGGACACATGTAAGACATTGTCGCATCTCTCGCCAGACATGGCCAATTATTGATGCGA-AGACAACTTCTGAACTTCTAAAGCTAAACCGTACCGAATGCGGAATGCTAATACGASizeHit CountTotal NormTotal
No Reads
droRho1
T------------------CACCGGGATATCGTAGGCAACTGTATAGCAGACGAGCTAGCCAGGCAAGGCACCACCATACCTCTCCTTCCAGGAAAGGAGAATGTCGGCATGCCGATGGCTACTTGTAAGCTAATTATTAAAAACCACTTCAGCAAAT-TAGCCAACACTTATTGGCA-AACACACCGCAATGCCGAATCTCTCACCAGACATGGCCTGAAATAAACAATA-AGAAAACATCAGAACTACTCAATTTCAGCCGCACTGAGTGCAGCATGCTAATTCGASizeHit CountTotal NormTotal
No Reads
droBia1
C------------------CG---GGTCACCGA-----------------ACGAGATAGGCAGGC-TGGCAACATCATGGCTCTCCTTCCGGAAAAGAAGAATGTCGGCATGCTTTTAACAACTTCCAAGCTAAATAACAGAAACTATTTTAACAAAT-------TTATTAGTTCGCAGAACGCACTAGAGTGTCGTATATCTAACCAGACATGGCCTGTAATTAACAGTAAAAAACACCTCGGAACTAATCAAACTCAGCTGCACAAAGTGCGG-------------SizeHit CountTotal NormTotal
No Reads
droTak1
T------------------CACCGGGACATCGTAGGCAACTGCATAGCGGATGAGTTAGCTAGGCAGGGCACCATCATGCCTCTCCTTCCAGAAAAGGAGAGTGTCGGTATGCCCATTGCAACTTGCAAGCTAAACATTAGAAATCAATTTATTAAAA-TAGCCAACACTAATTGGCAGAATGCACCAAGGTGTCGTATCACTCACCAGACATGGCCGATGATTAACAATA-AAAGAACGTCAGCACTGCTCAAACTCAGCCGCACAGAGTGTGGTATGTTAGTTAGGSizeHit CountTotal NormTotal
No Reads
droSim2
CTTTATATGGGTACCCGGACACAGGGACATAGAAGGCAACTGCATCGCAGATGAACTAGCTCGAGAAGGCACTACCGCGCCACTCATACAAGAGATGGAGGGCATGAGTATGCCTTTAGCCACTTGTAAACTACTACTTAGGGAAAACCTAAACCGTA-ACAAACAGACAATATGGGAAAACACCACACACTGTCGCCTAACACGCCAAATATGGCCAAAAATAAGCTTAA-AGAGAACGTCAAAACTTTTAAGATTGACCAGAGCAAACCTCAGCACTGCTATGAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droYak3
CCTTATATGGGTACACGGACACAGAGACATAGAAGGCAACTCCATCGCAGATGAACTAGCTCGAGAAGGCACTACCTCGCCACTCATACAAGAG-----------------------AGCCACATGTAAACTACTATGTAGGGAAAACCTAAGCCGAA-ACAAACAGACAATATGGGAAAATACCACACACTGTCGCCTAACACGCCAAATATGGCCAACAATAAGATCAA-AAAGAACGTCAAAACTCT------TGACCAGAGAAAACCATAGCACTGCTATGAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................AGATGAACTAGCTCGAGAAGGCACT.......................................................................................................................................................................................................................25200.35705200000000
........................................................................................................................................................................................CACACACTGTCGCCTAACACGCCAA...............................................................................25200.15303000000000
.....................................................................................................................................................................................TACCACACACTGTCGCCTAACACGC..................................................................................2570.14100100000000
...................................................................................................................................................................ACAGACAATATGGGAAAATACCACA....................................................................................................2590.11101000000000
.............................................CGCAGATGAACTAGCTCGAGAAGG...........................................................................................................................................................................................................................24200.10202000000000
...................................................................................................................................................................ACAGACAATATGGGAAAATACCA......................................................................................................23100.10100000010000
.........................................................................................................................................................CCGAA-ACAAACAGACAATATGG................................................................................................................22110.09101000000000
........................................................................................................................................................................................CACACACTGTCGCCTAACACGC..................................................................................22200.05101000000000
.........................................................................................................................................................................................ACACACTGTCGCCTAACACGCCAAATA............................................................................27200.05101000000000
.............................TAGAAGGCAACTCCATCGCAGATGAACT.......................................................................................................................................................................................................................................28200.05100000000001
.................................................GATGAACTAGCTCGAGAAGGCAT........................................................................................................................................................................................................................23200.05101000000000
................................................AGATGAACTAGCTCGAGAAGG...........................................................................................................................................................................................................................21200.05100000010000
................................................AGATGAACTAGCTCGAGAAGGC..........................................................................................................................................................................................................................22200.05100000010000
.............................................CGCAGATGAACTAGCTCGAGAAGGCACT.......................................................................................................................................................................................................................28200.05100000010000

Generated: 05/18/2015 at 05:01 AM