ID:

dps_2606

 Coordinate:

XL_group1e:797665-797815 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.1 -6.8 -6.5

Flybase annnotation

CDS [Dpse\GA27984-cds]; exon [dpse_GLEANR_723:2]; intron [Dpse\GA27984-in]

Repeatable elements

NameClassFamilyStrand
BilboLINELOA+
mature
  1. dps_2606  XL_group1e:797788-797811 +
  2. Unknown_singleton_2278:9762-9785 -
  3. Unknown_group_44:19610-19633 +
  4. Unknown_singleton_2382:659-682 -
  5. Unknown_group_163:15005-15028 -
  6. Unknown_group_28:21543-21566 +
  7. Unknown_singleton_325:2779-2802 +
  8. Unknown_singleton_2698:2633-2656 +
  9. Unknown_singleton_965:1634-1657 +
  10. Unknown_singleton_222:2281-2304 -
  11. Unknown_singleton_1020:837-860 -
  12. Unknown_singleton_119:502-525 -
  13. Unknown_singleton_1731:427-450 -
star
  1. Unknown_group_561:6947-6965 -
  2. dps_2606  XL_group1e:797758-797776 +
  3. Unknown_singleton_2278:9851-9869 -
  4. Unknown_group_44:19526-19544 +
  5. Unknown_group_216:3501-3519 +
  6. Unknown_singleton_2382:748-766 -
  7. Unknown_group_163:15094-15112 -
  8. Unknown_group_181:7874-7892 -
  9. Unknown_group_28:21459-21477 +
  10. Unknown_singleton_965:1550-1568 +
  11. Unknown_singleton_1020:925-943 -
  12. Unknown_singleton_119:591-609 -
  13. Unknown_singleton_1731:516-534 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGATAGTCTTCATCCCTAAAGCAGGTAAAGCCTCACACTCAAACCCGAAAGACTTTAGACCAATCAGTTGATCGTCTTTCCTCCTCAAAACCTTTCAGAGACTTATAGGGTTGCAACTACGGACAACCATAAGTCCTCAGCAGTACTCAAGTGCGCAGCATGTAGAAAAATCTCTGCATCTCAAAGAATACTCACTAATAGCTTTTCCCGATATCGAGGAAGCTTCAACCACGTCATACCGGGCGCTATTA
***********************************************************************************************************************************************.............((.(((((((......)))))))))................****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
...............................................................TCTGTTGATCGTCATTCCT......................................................................................................................................................................... 19 2 2 2.00 4 0 4 0 0
.............................................................................................................................................................................CTGCATCTCAAAGAATACTCACTA...................................................... 24 0 13 0.92 12 12 0 0 0
.............................................................................................................................................................................CTGCATCTCAAAGAATACTCACT....................................................... 23 0 15 0.80 12 11 0 0 1
.............................................................................................................................................................................CTGCATCTCAAAGAATACTCACTAAT.................................................... 26 0 12 0.67 8 4 4 0 0
........TTCATCCCTAAAGCAGGTAAAGCC........................................................................................................................................................................................................................... 24 0 4 0.50 2 2 0 0 0
..................................................................................................................................................................................................................................AACAACGTCATACCGGGCGCTATT. 24 1 2 0.50 1 1 0 0 0
............TCCCTAAAGCAGGTAAAGCCTCACACT.................................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0
...........................................................................................................................................................................CTCTGCATCTCAAAGAATACTCACTAA..................................................... 27 0 2 0.50 1 1 0 0 0
................TAAAGCAGGTAAAGCCTCACACTCAA................................................................................................................................................................................................................. 26 0 3 0.33 1 1 0 0 0
...............CTAAAGCAGGTAAAGCCTCACACT.................................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0
............................................................................................................................AACCATACGTCCGCAACAGT........................................................................................................... 20 3 3 0.33 1 1 0 0 0
.............................................................................................................................................................................CTGCATCTCAAAGAATACTCACTAA..................................................... 25 0 13 0.31 4 3 0 0 1
...................................................................................................................................................................................CTCAAAGAATACTCACTAATAGCTAA.............................................. 26 2 13 0.23 3 0 0 3 0
.............................................................................................................................................................................CTGCATCTCAAAGAATACTCAC........................................................ 22 0 15 0.20 3 3 0 0 0
.............................................................................................................................................................................CTGCATCTCAAAGAATACTCACTAATA................................................... 27 0 12 0.17 2 2 0 0 0
...............................................................................................................................................TACTCAAGTGCGCAGCATG......................................................................................... 19 0 13 0.15 2 2 0 0 0
.............................................................................................................................................................................CTGCATCTCAAAGAATACTC.......................................................... 20 0 18 0.11 2 2 0 0 0
...............................................................................................................................................TACTCAAGTGTGCAGCAGTT........................................................................................ 20 3 11 0.09 1 1 0 0 0
..............................................................................................................................................GTACTCAAGTGCGCAGCATG......................................................................................... 20 0 13 0.08 1 1 0 0 0
.............................................................................................................................................................................CTGCATCTCAAAGAATACTCACTAAAA................................................... 27 1 13 0.08 1 1 0 0 0
..................................................................................................................................................................................TCTCAAAGAATACTCACTAATAGCT................................................ 25 0 13 0.08 1 1 0 0 0
....................................................................................................................................................................................TCAAAGAATACTCACTAATAGC................................................. 22 0 13 0.08 1 1 0 0 0
.............................................................................................................................................................................CTGCATCTCAAGGAATACTCACTAA..................................................... 25 1 14 0.07 1 1 0 0 0
.............................................................................................................................................................................CTGCATCTCAAGGAATACTCACTA...................................................... 24 1 14 0.07 1 1 0 0 0
.........TCATCCCGAACGCAGGTA................................................................................................................................................................................................................................ 18 2 16 0.06 1 1 0 0 0
.............................................................................................................................................................................CTGCATCTCAAGGAATACTCAC........................................................ 22 1 16 0.06 1 1 0 0 0
.....................................................................................................................................TCCTCAGCTGTACTCAAGTG.................................................................................................. 20 1 16 0.06 1 0 0 1 0

Anti-sense strand reads

CCTATCAGAAGTAGGGATTTCGTCCATTTCGGAGTGTGAGTTTGGGCTTTCTGAAATCTGGTTAGTCAACTAGCAGAAAGGAGGAGTTTTGGAAAGTCTCTGAATATCCCAACGTTGATGCCTGTTGGTATTCAGGAGTCGTCATGAGTTCACGCGTCGTACATCTTTTTAGAGACGTAGAGTTTCTTATGAGTGATTATCGAAAAGGGCTATAGCTCCTTCGAAGTTGGTGCAGTATGGCCCGCGATAAT
******************************************************.............((.(((((((......)))))))))................*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 M059
embryo
 GSM444067
head
 GSM343916
embryo
 M062
head
 SRR902012
CNS imaginal disc
.............................................................................................................................................................CGTACATCTTTTTAGAGACGTAGAGT.................................................................... 26 0 1 7.00 7 7 0 0 0 0 0 0 0 0
.................................................................................................................................................GAGTTCACGCGTCGTACATCTTTTT................................................................................. 25 0 1 3.00 3 2 0 0 1 0 0 0 0 0
...................................................................................................................................TCAGGAGTCGTCATGAGTTCACGCGT.............................................................................................. 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0
............AGGGATTTCGTCCATTTCGGAGT........................................................................................................................................................................................................................ 23 0 4 2.25 9 7 2 0 0 0 0 0 0 0
..................................................................................GGAGTTTTGGAAAGTCTCTGAAT.................................................................................................................................................. 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0
.......................................................................................................................GCCTGTTGGTATTCAGGAGTCGTCAT.......................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ATGAGTGATTATCGAAAAGGGCTATA..................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................GGAGTCGTCATGAGTTCACGCGT.............................................................................................. 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0
...........................................GGGCTTTCTGAAATCTGGTT............................................................................................................................................................................................ 20 0 13 1.54 20 19 0 1 0 0 0 0 0 0
.............................................................................................................................................................................GACGTAGAGTTTCTTATGAGTGATT..................................................... 25 0 13 1.08 14 3 5 6 0 0 0 0 0 0
.....................................GAGTTTGGGCTTTCTGAAATCTGGTT............................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................AGTTCACGCGTCGTACATCTTTTT................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CCTTATGAGTGATTATCGAAAAGGGCT........................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGAGTGATTATCGAAAAGGGCTATA..................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AAAGTTGTCGCAGTATGGCCCGCGAT... 26 3 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................GTACATCTTTTTAGAGACGTAGAGT.................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................CATTTCGGAGTGTGAGTTTGGGCT........................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................TCAGGAGTCGTCATGAGTTCA................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGTTGTTGCAGTATGGCCCGCGAT... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................GTGAGTTTGGGCTTTCTGAAATCTGGTT............................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................................................GGAAAGTCTCTGAATATCCCAACGT........................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATAGCTCCTTCGAAGTTGGTGCAGT............... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TGATGCCTGTTGGTATTCAGGA.................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................CTGAATATCCCAACGTTGATGCCT................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................TGGTATTCAGGAGTCGTCATGAGT...................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................ATGTTGCCAGTTGGTATTCAG.................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 1 0 0
....................CGTCCATTTCGGAGTGTGAGTT................................................................................................................................................................................................................. 22 0 3 0.67 2 2 0 0 0 0 0 0 0 0
..................TTCGTCCATTTCGGAGTGTGAGTT................................................................................................................................................................................................................. 24 0 3 0.67 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCATGAGTGATCTTCGAAAAG............................................ 21 3 15 0.67 10 9 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TGAGTGATCTTCGAAAAG............................................ 18 2 20 0.65 13 12 0 0 0 0 1 0 0 0
............................................................................................................................................................................................ATGAGTGATCTTCGAAAAG............................................ 19 2 17 0.65 11 10 0 0 1 0 0 0 0 0
............................................GGCTTTCTGAAATCTGGTT............................................................................................................................................................................................ 19 0 13 0.62 8 4 0 4 0 0 0 0 0 0
.............................................................................................................................................................................GACGTAGAGTTTCTTATGAGTGATTAT................................................... 27 0 12 0.58 7 0 6 1 0 0 0 0 0 0
.............................................................................................................................................................................GACGTAGAGTTTCTTATGAGTGAT...................................................... 24 0 13 0.54 7 4 1 2 0 0 0 0 0 0
...........TAGGGATTTCGTCCATTTCGGAGT........................................................................................................................................................................................................................ 24 0 4 0.50 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCATGAGTGATCTTCGAAAAGGG.......................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 1 0
........AAGTAGGGATTTCGTCCATTTCGGAGT........................................................................................................................................................................................................................ 27 0 4 0.50 2 2 0 0 0 0 0 0 0 0
.........AGTAGGGATTTCGTCCATTTCGGAGT........................................................................................................................................................................................................................ 26 0 4 0.50 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................GTAGAGTTTCTTATGAGTGATTAT................................................... 24 0 13 0.38 5 1 4 0 0 0 0 0 0 0
..................................................................................................................................................................................AGAGTTTCTTATGAGTGATTAT................................................... 22 0 13 0.38 5 0 4 1 0 0 0 0 0 0
.............GGGATTTCGTCCATTTCGGAGTGT...................................................................................................................................................................................................................... 24 0 3 0.33 1 0 1 0 0 0 0 0 0 0
............AGGGATTTCGTCCATTTCGGAGTGT...................................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................GGGCTTTCTGAAATCTGGT............................................................................................................................................................................................. 19 0 13 0.31 4 4 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGACGTAGAGTTCCTTATGAGTGATT..................................................... 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................CGTACCTTTTTTTAGTGACGT......................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0
...........AAGGGATTTCGTCCATTTCGGAGT........................................................................................................................................................................................................................ 24 1 4 0.25 1 1 0 0 0 0 0 0 0 0
...........AAGGGATTTCGTCCATTTCGGAGTG....................................................................................................................................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CGTAGAGTTTCTTATGAGTGATTAT................................................... 25 0 13 0.23 3 0 2 0 0 1 0 0 0 0
..................................................................................................................................................................................AGAGTTTCTTATGAGTGAT...................................................... 19 0 14 0.21 3 1 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GAAAAGGGCCATAGGTC................................. 17 2 14 0.21 3 0 3 0 0 0 0 0 0 0
...........................................................................................................................................................................GAGACGTAGAGTTTCTTAT............................................................. 19 0 5 0.20 1 1 0 0 0 0 0 0 0 0
..............GGATTTCGTCCATTTCGGAGTG....................................................................................................................................................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGAAGTTGTTGCAGTATGGCCCGCGA.... 26 2 6 0.17 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TAGAGACGTAGAGTCTATTA.............................................................. 20 2 6 0.17 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGAGTTTCTTATGAGTGATTATCGAAA.............................................. 27 0 13 0.15 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGTTTCTTATGAGTGATTATCGAA............................................... 24 0 13 0.15 2 0 0 2 0 0 0 0 0 0
............................................GGCTTTCTGAAATCTGGT............................................................................................................................................................................................. 18 0 13 0.15 2 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................AGAGTTTCTTATGAGTGATTATCGAA............................................... 26 0 13 0.15 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ACGTAGAGTTTCTTATGAGTGAT...................................................... 23 0 14 0.14 2 0 0 1 0 0 0 1 0 0
................................................................................................................................................................................GTAGAGTTTCTTATGAGTGATTGT................................................... 24 1 14 0.14 2 0 0 2 0 0 0 0 0 0
..........AAAGGGATTTCGTCCATTT.............................................................................................................................................................................................................................. 19 2 7 0.14 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCATGAGTGATCTTCGAAAA............................................. 20 3 18 0.11 2 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................ATGAGTGATCTTCGAAAA............................................. 18 2 19 0.11 2 1 0 0 0 0 1 0 0 0
..............................................CTTTCTGAAATCTGGTTAGT......................................................................................................................................................................................... 20 0 13 0.08 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................AAGAGTTTCTTATGAGTGATTATCG................................................. 25 1 13 0.08 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................GAGTTTCTTATGAGTGATTATCGA................................................ 24 0 13 0.08 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................CATGAGTTCACGCGTCGTAC......................................................................................... 20 0 13 0.08 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................GTAGAGTTTCTTATGAGTGATTATCG................................................. 26 0 13 0.08 1 1 0 0 0 0 0 0 0 0
...........................................TGGCTTTCTGAAATCTGGTT............................................................................................................................................................................................ 20 1 13 0.08 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTTTCTTATGAGTGATTAT................................................... 19 0 13 0.08 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................GTAGAGTTTCTTATCAGTGATTAT................................................... 24 1 13 0.08 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................GTAGAGTTTCTTATGAGTGATTATCGAA............................................... 28 0 13 0.08 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTTTCTTATGAGTGATTATCGAAA.............................................. 24 0 13 0.08 1 0 1 0 0 0 0 0 0 0
.............................................GCTTTCTGAAATCTGGTT............................................................................................................................................................................................ 18 0 13 0.08 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................TAGTGTTTCTTATGAGTGATT..................................................... 21 1 14 0.07 1 0 0 1 0 0 0 0 0 0
.....................................................................CTAGCAGGAAGGAGGAGTTTT................................................................................................................................................................. 21 1 14 0.07 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................AGTCGACATGAGTTCACGCGT.............................................................................................. 21 1 14 0.07 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TAGAGTTTCTTATGAGTGATT..................................................... 21 0 14 0.07 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................ACGTAGAGTTTCTTATGAGTGATT..................................................... 24 0 14 0.07 1 0 0 1 0 0 0 0 0 0
...............................................................AGTCAAATAGCAGAAAGGAGGAGT.................................................................................................................................................................... 24 1 14 0.07 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CGTAGAGTTTCTTATGAGTGAT...................................................... 22 0 14 0.07 1 0 0 1 0 0 0 0 0 0
.........................................................................CAGAAAGGATGAGTTTTGGAAAGT.......................................................................................................................................................... 24 1 15 0.07 1 0 0 0 0 1 0 0 0 0
...............................................................................GGAGGAGTTTAGGAAATTCTCTGA.................................................................................................................................................... 24 2 15 0.07 1 1 0 0 0 0 0 0 0 0
.....................................................................TTAGCAGCAAGGAGGAGTTT.................................................................................................................................................................. 20 2 16 0.06 1 1 0 0 0 0 0 0 0 0
...............................................................................GGAGGAGTTTAGGAAATTCT........................................................................................................................................................ 20 2 18 0.06 1 1 0 0 0 0 0 0 0 0
............................................................................AAAGGAGGAGTTTTGGAAACTCT........................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................TGCGTTCAGGCGTCGTGCA........................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
...........................................................................AAAAGGAGGAGTTTTGGAAACTCT........................................................................................................................................................ 24 2 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TATGAGTGATTATCA................................................. 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................CATGAGTGATCTTCGAAAA............................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................AAAAGGAGGAGTTTTGGTAACT.......................................................................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:797615-797865 + dps_2606 GG-------ATAGTCTTCATCCCTAAAGCAGGTAAAG-CCTCACACTCAAACCCGAAAGACTTTAGACCAATCAGTTGATCGTCTTTCCTCCTCAAAACCTTTCAGAGACTTATAGGGTTGCAACTACGGACAACCATAAGTCCTCAGCAGTACTCAAGT-----GCGCAGCATG------------------------------------------------------TAGAAAAATCTCTGCATCTCAAAGAATACTCACTAATAGCTTTTCCCGATATCGAGGAAGC-TTCAACCACGTCATACCGGGCGCTATTA
droPer2 scaffold_30:416613-416864 - GG-------ATAGTCTTCATCCCTAAAGCAGGTAAAG-CCTCACACTCAAACCCGAAAGACTTTAGACCAATCAGTTGATCGTCTTTCCTCCTCAAAACCTTTCAGAGACTTATAGGGTTGCAACTACGGACAACCATAAGTCCTCAGCAGTACTCAAGT-----GCGCAGCATG------------------------------------------------------TAGAAAAATCTCTGCATCTCAAAGAATACTCACTAATAGCTTTTCCCGATATCGAGGGAGCCTTCAACAACGTCATACCGGGCGCTATTA
droGri2 scaffold_14592:114980-115227 - AA-------ATAACCTTCATACCCAAAGCTGGGAAGC-CATCGCA--------CCAAAGATTTCAGACCCATCAGTCTGTCATCTTTCATGCTAAAGACCCTGGAACGACTTATAAGTCGCCATCTCACAGCATCCATTGACCCCAGGCTTATGTCGGAG-----TCCCAACATGCCTA--------------------------------------------------TAGAAAAATCTCTACTCCATTAGGAGTACACCCTAATAGCGTGCCTCGACATTGAGGGCACCTTTAACAACGTCACTCCGGCAGCCATAA
droAna3 scaffold_13260:783220-783455 + AG-------GTTGTATTCATACCTAAGGCGGGCAAAC-CATCCCACTGCACCCCTAAGGACTTCAGACCTATGAGTCTTTCATCCTTCCTCCTAAAGACTTTGGAAAGACTTTTAAGTCTCCATTTCCA-ACTTCCA----------------------------TCTAAGCATGCTTACAAAAGGGGCTGATCAACAGAAACAGCCCTGC--------------------AAAAAATCACTA--------------------------TTTTCTGAACATAGAAGGGTCCTTCAACAACATCTTGCCGTGCTCAATAA
droBip1 scf7180000394839:15742-15993 + G------------TATTTATACCCAAAGCGGGAAAAC-CGTCTCACTGCACCCCTAAGGACTTCAGACCAATAAGCCTGTCGTCCTTCCTTCTCAAGACAATGGAGAGACTAATCAGCCTCAACATAAATCTTACTATCAACCCAGATTATATCTTGGGA-----TCACAGCATGCGTATAGGAAGGGCCGATCCACGGAAACGGCAC-------------------------------------------------TCCACTCATTGCTTTTCTAGACATAGAAGGTGCGTTCAACAACATCCTACCAAGCTCGATAA
droKik1 scf7180000301603:17472-17720 + GG-------GTAGTCTTCATACCAAAACCAGGAAGAA-GGGGACACATCCAAGCCAAGGATTATAGGCCGATAAGCCTTACCACTTTTCTAATGAAAACACTGAAAAGGATCATTGATATCCACATCAGAGAAAGAACGGAAAAAAACCTT---TCCAAT-----GCGCAACATGC------------------------------------------------------ACAAAAGGCTCTACTTTTCAAAAACTACGCCATGGCCACCTTCCTGGACATAGAAGGAGCCTTTAATAACGTAAATGCGGATTCCATCC
droFic1 scf7180000453877:23208-23460 - GG-------GTGGTCTTCATCCCCAAAGCAGGGAAGA-AAGACATCACCAACCCAAAGTCCTTCAGACCTATCAGCTTTACTTCGTTTTGCCTTAAAACGTTGGAAAAGCTGGTAGACTACCATATTACGAGCACAGTTCTTAAGGACTGTCCGCTGCAA--CCCACGCAGCACGCATAAAGGGCAGGTCGTTCAACAGACACTGTAC-------------------------------------------------CAACT-------TTGTCACACTCTAGAGGGAGCCTTTGAAAATGCGTCGCATGATGCTGTCT
droEle1 scf7180000490380:94203-94436 - AG-------GTAGTTTTTATACCCAAAGCGGGCAAAG-CCTCGCACACGACGACGAAAGATTTCAGGCCTATAAGTCTGACATCCTTGATACAA-----------------------------------------------------------------------------CATGCTTACTCAAAGGGCAAGTCCACCGATTTAGCTCTACACGCGGTAGTCAGCCAAATCGAAAAGTCACTCAACCACAAGGAATACGCACTAGTTGCATTCCTTAACTTAGAGAGCGCTTTCAACAATGTTCTCCCTGCAGCCATAA
droRho1 scf7180000778541:388-673 - AA-------GTCGTTTTCATCCCTAAGGCAGGGAAAG-CCACCCATACTACAGCGAAGGATTTCAGACCGATAAGTCTGACATCATTCCTGCTAAAAATCCTAGACACATTA----------------GAGACATCATTGACCCGACGCAGATATCAGAGGT---A------AGAGGTACACCAAAGGTAAGTCGACCGAATCGGCGCTACACTTGGTAGTAAGCAACATCGAGAAATCACTCAGTATACAAGAATACACCTTGATCGCCTTCCTTGACATAGAAGGAGCTTTCAACAACGTGCTCCCCACGGCAATAA
droBia1 scf7180000297140:223-490 + GGAACAAAAGTGGTTTTCATTCTCAAAGGAAGGGAGGCCAC--CACACAACAGCAAAGGACTTCAGACCAATAAGCCTGACATCATTCCTGCTAAAAGCTTT-GAAAGACTGATAAGCGTACACATAAGAGCCATTATCGACCCGACACTCATATCAGAA-----------CACACTT-------------------------------------GAGCGTAAGAAGCATCGAGATATCACCCAGCATCAAGGAATACACATTGTTTGCCTTCCTGGACATAGAGGGAGCTTTCAATAACATGCTTCCCACAGCAGTAA
droTak1 scf7180000413081:2972-3230 - GG-------ATTGTCTTCCTCCCAAAAGCGGGAAAGT-GCAGTCACGCGAGCTCCAAGGATTACAGGCCGATAAGCCTCACCTTTTTCATTCTCAAAACACTGGAAAAGCTGCTGGATCTACACATCAGGAATGATGG------GAAGCTCATGTCATCC-----AACCAGCAC-----------------------------------------GCTAGTAGCAACCGTTGAGAGAGCGCTACACATTAAGGATGATGCGCTTGGAGTATTCGTAGATATATCCGAAGCATTCAACAATGTCAAGACGGATGCTATAA
droYak3 3R:266623-266883 + GT-------ATTGTCTTTATCCCCAAAGCAGGGAAAC-CATCACTCACGACCCCCAAGGACTTCAGACCAATCAGTCTGTCATCCTTTCTACTAAAGACCCTTAAAAGAATCATCGGCCTACACCTGAGTTCAACTCTCAACCCTAGTCTTATCACAGAC-----ACGCAACACGCCTACAAG---------------------------------------------ATAGAAAAATCAATGTCCCAAAAGGAATATGCACTGGTAGCTTTCCTGGACATAGAAGGAGCTTTTAGCAACGTCATCCCAACGGCGATTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GG-------ATAGTCTTCATCCCTAAAGCAGGTAAAG-CCTCACACTCAAACCCGAAAGACTTTAGACCAATCAGTTGATCGTCTTTCCTCCTCAAAACCTTTCAGAGACTTATAGGGTTGCAACTACGGACAACCATAAGTCCTCAGCAGTACTCAAGT-----GCGCAGCATG------------------------------------------------------TAGAAAAATCTCTGCATCTCAAAGAATACTCACTAATAGCTTTTCCCGATATCGAGGAAGC-TTCAACCACGTCATACCGGGCGCTATTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................CTGCATCTCAAAGAATACTCACTA.......................................................24130.921201200000000
................................................................................................................................................................................................................................................CTGCATCTCAAAGAATACTCACT........................................................23150.801201110000000
................................................................................................................................................................................................................................................CTGCATCTCAAAGAATACTCACTAAT.....................................................26120.6780400000400
...............TTCATCCCTAAAGCAGGTAAAG-CC.......................................................................................................................................................................................................................................................................................2440.5020200000000
...................TCCCTAAAGCAGGTAAAG-CCTCACACT................................................................................................................................................................................................................................................................................2720.5010100000000
..............................................................................................................................................................................................................................................CTCTGCATCTCAAAGAATACTCACTAA......................................................2720.5010100000000
.......................TAAAGCAGGTAAAG-CCTCACACTCAA.............................................................................................................................................................................................................................................................................2630.3310100000000
......................CTAAAGCAGGTAAAG-CCTCACACT................................................................................................................................................................................................................................................................................2430.3310100000000
................................................................................................................................................................................................................................................CTGCATCTCAAAGAATACTCACTAA......................................................25130.3140310000000
......................................................................................................................................................................................................................................................CTCAAAGAATACTCACTAATAGCTAA...............................................26130.2330000000030
................................................................................................................................................................................................................................................CTGCATCTCAAAGAATACTCAC.........................................................22150.2030300000000
................................................................................................................................................................................................................................................CTGCATCTCAAAGAATACTCACTAATA....................................................27120.1720200000000
.......................................................................................................................................................TACTCAAGT-----GCGCAGCATG------------------------------------------------------..........................................................................................19130.1520200000000
................................................................................................................................................................................................................................................CTGCATCTCAAAGAATACTC...........................................................20180.1120200000000
......................................................................................................................................................GTACTCAAGT-----GCGCAGCATG------------------------------------------------------..........................................................................................20130.0810100000000
.....................................................................................................................................................................................................................................................TCTCAAAGAATACTCACTAATAGCT.................................................25130.0810100000000
.......................................................................................................................................................................................................................................................TCAAAGAATACTCACTAATAGC..................................................22130.0810100000000
droPer2
GG-------ATAGTCTTCATCCCTAAAGCAGGTAAAG-CCTCACACTCAAACCCGAAAGACTTTAGACCAATCAGTTGATCGTCTTTCCTCCTCAAAACCTTTCAGAGACTTATAGGGTTGCAACTACGGACAACCATAAGTCCTCAGCAGTACTCAAGT-----GCGCAGCATG------------------------------------------------------TAGAAAAATCTCTGCATCTCAAAGAATACTCACTAATAGCTTTTCCCGATATCGAGGGAGCCTTCAACAACGTCATACCGGGCGCTATTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................TTTAGACCAATCAGTTGATCGTCT..........................................................................................................................................................................................................................................2440.251010000
.......................................................................................................CAGAGACTTATAGGGTTGCAACTA................................................................................................................................................................................................2440.251010000
.......................................................AAAGACTTTAGACCAATCAGTTGATC..............................................................................................................................................................................................................................................2640.251010000
droGri2
AA-------ATAACCTTCATACCCAAAGCTGGGAAGC-CATCGCA--------CCAAAGATTTCAGACCCATCAGTCTGTCATCTTTCATGCTAAAGACCCTGGAACGACTTATAAGTCGCCATCTCACAGCATCCATTGACCCCAGGCTTATGTCGGAG-----TCCCAACATGCCTA--------------------------------------------------TAGAAAAATCTCTACTCCATTAGGAGTACACCCTAATAGCGTGCCTCGACATTGAGGGCACCTTTAACAACGTCACTCCGGCAGCCATAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................CAGTCTGTCATCTTTCATGCTAAAGACCC..........................................................................................................................................................................................................................29100.10110
.........ATAACCTTCATACCCAAAGCTGGGAAGC-.........................................................................................................................................................................................................................................................................................28200.05110
...........AACCTTCATACCCAAAGCTGGGAAGC-C........................................................................................................................................................................................................................................................................................27200.05110
droAna3
AG-------GTTGTATTCATACCTAAGGCGGGCAAAC-CATCCCACTGCACCCCTAAGGACTTCAGACCTATGAGTCTTTCATCCTTCCTCCTAAAGACTTTGGAAAGACTTTTAAGTCTCCATTTCCA-ACTTCCA----------------------------TCTAAGCATGCTTACAAAAGGGGCTGATCAACAGAAACAGCCCTGC--------------------AAAAAATCACTA--------------------------TTTTCTGAACATAGAAGGGTCCTTCAACAACATCTTGCCGTGCTCAATAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................TA--------------------------TTTTCTGAACATAGAAGGGTCCTT..........................2611.001100000
........................................................................................................................................................................AAGCATGCTTACAAAAGGG....................................................................................................................................1940.251000001
.........GTTGTATTCATACCTAAGGCGGGC..............................................................................................................................................................................................................................................................................................24100.202020000
.........GTTGTATTCATACCTAAGGCGGGCA.............................................................................................................................................................................................................................................................................................25100.101100000
........................................TCCCACTGCACCCCTAAGGACTTCAGACC..........................................................................................................................................................................................................................................................29200.102200000
..................................................CCCCTAAGGACTTCAGACC..........................................................................................................................................................................................................................................................19200.051100000
........................AAGGCGGGCAAAC-CATCCCAC.................................................................................................................................................................................................................................................................................21200.051010000
........................AAGGCGGGCAAAC-CATCCCACTGCACCC..........................................................................................................................................................................................................................................................................28200.051010000
......................................CATCCCACTGCACCCCTAAGGACTTC...............................................................................................................................................................................................................................................................26200.051010000
.........................................CCCACTGCACCCCTAAGGACTTCAGACC..........................................................................................................................................................................................................................................................28200.051100000
.......................................................................................................................................................................................................................................................................................................ACAACATCTTGCCGTGCTCAATAA24200.051100000
......................................CATCCCACTGCACCCCTAAGGA...................................................................................................................................................................................................................................................................22200.051100000
............................................ACTGCACCCCTAAGGACTTCAGACCTA........................................................................................................................................................................................................................................................27200.051100000
...................................AC-CATCCCACTGCACCCCTAAGGACTTCA..............................................................................................................................................................................................................................................................29200.051100000
droBip1
G------------TATTTATACCCAAAGCGGGAAAAC-CGTCTCACTGCACCCCTAAGGACTTCAGACCAATAAGCCTGTCGTCCTTCCTTCTCAAGACAATGGAGAGACTAATCAGCCTCAACATAAATCTTACTATCAACCCAGATTATATCTTGGGA-----TCACAGCATGCGTATAGGAAGGGCCGATCCACGGAAACGGCAC-------------------------------------------------TCCACTCATTGCTTTTCTAGACATAGAAGGTGCGTTCAACAACATCCTACCAAGCTCGATAASizeHit CountTotal NormTotal
No Reads
droKik1
GG-------GTAGTCTTCATACCAAAACCAGGAAGAA-GGGGACACATCCAAGCCAAGGATTATAGGCCGATAAGCCTTACCACTTTTCTAATGAAAACACTGAAAAGGATCATTGATATCCACATCAGAGAAAGAACGGAAAAAAACCTT---TCCAAT-----GCGCAACATGC------------------------------------------------------ACAAAAGGCTCTACTTTTCAAAAACTACGCCATGGCCACCTTCCTGGACATAGAAGGAGCCTTTAATAACGTAAATGCGGATTCCATCCSizeHit CountTotal NormTotal
No Reads
droFic1
GG-------GTGGTCTTCATCCCCAAAGCAGGGAAGA-AAGACATCACCAACCCAAAGTCCTTCAGACCTATCAGCTTTACTTCGTTTTGCCTTAAAACGTTGGAAAAGCTGGTAGACTACCATATTACGAGCACAGTTCTTAAGGACTGTCCGCTGCAA--CCCACGCAGCACGCATAAAGGGCAGGTCGTTCAACAGACACTGTAC-------------------------------------------------CAACT-------TTGTCACACTCTAGAGGGAGCCTTTGAAAATGCGTCGCATGATGCTGTCTSizeHit CountTotal NormTotal
No Reads
droEle1
AG-------GTAGTTTTTATACCCAAAGCGGGCAAAG-CCTCGCACACGACGACGAAAGATTTCAGGCCTATAAGTCTGACATCCTTGATACAA-----------------------------------------------------------------------------CATGCTTACTCAAAGGGCAAGTCCACCGATTTAGCTCTACACGCGGTAGTCAGCCAAATCGAAAAGTCACTCAACCACAAGGAATACGCACTAGTTGCATTCCTTAACTTAGAGAGCGCTTTCAACAATGTTCTCCCTGCAGCCATAASizeHit CountTotal NormTotal
No Reads
droRho1
AA-------GTCGTTTTCATCCCTAAGGCAGGGAAAG-CCACCCATACTACAGCGAAGGATTTCAGACCGATAAGTCTGACATCATTCCTGCTAAAAATCCTAGACACATTA----------------GAGACATCATTGACCCGACGCAGATATCAGAGGT---A------AGAGGTACACCAAAGGTAAGTCGACCGAATCGGCGCTACACTTGGTAGTAAGCAACATCGAGAAATCACTCAGTATACAAGAATACACCTTGATCGCCTTCCTTGACATAGAAGGAGCTTTCAACAACGTGCTCCCCACGGCAATAASizeHit CountTotal NormTotal
No Reads
droBia1
GGAACAAAAGTGGTTTTCATTCTCAAAGGAAGGGAGGCCAC--CACACAACAGCAAAGGACTTCAGACCAATAAGCCTGACATCATTCCTGCTAAAAGCTTT-GAAAGACTGATAAGCGTACACATAAGAGCCATTATCGACCCGACACTCATATCAGAA-----------CACACTT-------------------------------------GAGCGTAAGAAGCATCGAGATATCACCCAGCATCAAGGAATACACATTGTTTGCCTTCCTGGACATAGAGGGAGCTTTCAATAACATGCTTCCCACAGCAGTAASizeHit CountTotal NormTotal
No Reads
droTak1
GG-------ATTGTCTTCCTCCCAAAAGCGGGAAAGT-GCAGTCACGCGAGCTCCAAGGATTACAGGCCGATAAGCCTCACCTTTTTCATTCTCAAAACACTGGAAAAGCTGCTGGATCTACACATCAGGAATGATGG------GAAGCTCATGTCATCC-----AACCAGCAC-----------------------------------------GCTAGTAGCAACCGTTGAGAGAGCGCTACACATTAAGGATGATGCGCTTGGAGTATTCGTAGATATATCCGAAGCATTCAACAATGTCAAGACGGATGCTATAASizeHit CountTotal NormTotal
No Reads
droYak3
GT-------ATTGTCTTTATCCCCAAAGCAGGGAAAC-CATCACTCACGACCCCCAAGGACTTCAGACCAATCAGTCTGTCATCCTTTCTACTAAAGACCCTTAAAAGAATCATCGGCCTACACCTGAGTTCAACTCTCAACCCTAGTCTTATCACAGAC-----ACGCAACACGCCTACAAG---------------------------------------------ATAGAAAAATCAATGTCCCAAAAGGAATATGCACTGGTAGCTTTCCTGGACATAGAAGGAGCTTTTAGCAACGTCATCCCAACGGCGATTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................AAAAGAATCATCGGCCTACACCTG................................................................................................................................................................................................2415.00523000000000
..............................................................................................................................................................................GCCTACAAG---------------------------------------------ATAGAAAAATCAATGTCC.........................................................................2713.00303000000000
.......................................................................................................AAAAGAATCATCGGCCTACACCT.................................................................................................................................................................................................2313.00311100000000
......................................................................................................................................................................................................................................................................................................AGCAACGTCATCCCAACGGCGATTG2512.00202000000000
.......................................................................................................AAAAGAATCATCGGCCTACACCTGAG..............................................................................................................................................................................................2612.00202000000000
.......................................................................................................AAAAGAATCATCGGCCTACACCTGT...............................................................................................................................................................................................2511.00101000000000
...................................................................................................................................................................................................................................................................................GGACATAGAAGGAGCTTTTAGCAACG..................2611.00101000000000
..............................................................................................................................................................................GCCTACAAG---------------------------------------------ATAGAAAAATCAATGT...........................................................................2511.00101000000000
................................................................................................................................................................................................................................................................................CCTGGACATAGAAGGAGCTTTTAGC......................2511.00101000000000
...................................AC-CATCACTCACGACCCCCAAGGAC..................................................................................................................................................................................................................................................................2511.00101000000000
.................................................................................................................................TTCAACTCTCAACCCTAGTCTTATCACA..................................................................................................................................................................2811.00101000000000
...............................................................................................................................................................................CCTACAAG---------------------------------------------ATAGAAAAATCAATGTCC.........................................................................2611.00101000000000
........................................................................................................AAAGAATCATCGGCCTACACCTGAG..............................................................................................................................................................................................2511.00101000000000
..............................................................................................................................................................................................................................................................................................GAGCTTTTAGCAACGTCATCCC...........2211.00101000000000
.......................................................................................................AAAAGAATCATCGGCCTACACC..................................................................................................................................................................................................2211.00100100000000
......................................................................................................................................................................................................................................................................................................AGCAACGTCATCCCAACGGCGATT.2411.00101000000000
...................................AC-CATCACTCACGACCCCCAAGGACT.................................................................................................................................................................................................................................................................2611.00101000000000
.........ATTGTCTTTATCCCCAAAGCAGGGAA............................................................................................................................................................................................................................................................................................2620.50101000000000
.........ATTGTCTTTATCCCCAAAGCAGG...............................................................................................................................................................................................................................................................................................2320.50101000000000
..........TTGTCTTTATCCCCAAAGCAGGGAA............................................................................................................................................................................................................................................................................................2520.50101000000000
.............................................................................................................................TGAGTTCAACTCTCAACGA...............................................................................................................................................................................1940.25101000000000
........................................................................................................................................CTCAACCCTAGTCTTATCACA..................................................................................................................................................................2160.17101000000000
.................................................................................................................................................................................................................................................................TGCACTGGTAGCTTTCCTGGACA.......................................23200.05101000000000
.....................................................................................................................................................................................................................................................................CTGGTAGCTTTCCTGGACATAGAAGG................................26200.05101000000000
.................................................................................................................................................................................................................................................................TGCACTGGTAGCTTTCCTGGACATG.....................................25200.05101000000000
.................................................................................................................................................................................................................................................................TGCACTGGTAGCTTTCCTGGACATAGAT..................................28200.05101000000000
...................................................................................................................................................................................................................................................TCCCAAAAGGAATATGCACTGGTAGCT.................................................27200.05101000000000
...................................................................................................................................................................................CAAG---------------------------------------------ATAGAAAAATCAATGTCCC........................................................................23200.05100100000000
....................................................................................................................................................................................................................................................CCCAAAAGGAATATGCACTGGTAGCTT................................................27200.05100100000000
..................................................................................................................................................................................................................................................................................TGGACATAGAAGGAGCTA...........................18200.05101000000000
...............................................................................................................................................................................................................................................................TATGCACTGGTAGCTTTCCTGGACA.......................................25200.05100100000000
.................................................................................................................................................................................................................................................................TGCACTGGTAGCTTTCCTGGACATAGAAGG................................30200.05100000000001
......................................................................................................................................................................................................................................................................TGGTAGCTTTCCTGGACATAGAAGG................................25200.05101000000000
...................................................................................................................................................................................CAAG---------------------------------------------ATAGAAAAATCAATGTCCCA.......................................................................24200.05101000000000

Generated: 05/18/2015 at 05:04 AM