ID:

dps_2601

 Coordinate:

XL_group1e:398460-398610 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.1 -21.0 -20.9

Flybase annnotation

exon [dpse_GLEANR_648:3]; CDS [Dpse\GA12987-cds]; intron [Dpse\GA12987-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTTCCTCGCTATATTTTTCGTTCATCATTTGAGCCTTTTGTGCGGCAATGCAACTGGACCTTGCCGATTGGGATCGGGGATTGCGAACGGCTTCCATGACGACAAGAGATTTTGTTTCACTCACTAACTATTTCACTTTCAAAGAAACTTAAAACGCTTATAGAATACTTAATAAAAAATGTATATTTTGTAATTTTCAGCTGGCTCGGAAAGGTCTGAAGCTGGTACTGATTAGTCGATCGTTGAATAA
**************************************************.....((((....((((.(((.((((...)))).))).)))).))))(((.((((((....)))))))))......................................((((((((((................)))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 M022
male body		 GSM444067
head
 M062
head
 GSM343916
embryo
..................................................................GATTGGGATCGGGGATTGCG..................................................................................................................................................................... 20 0 1 203.00 203 179 21 3 0 0 0 0
..................................................................GATTGGGATCGGGGATTGCGA.................................................................................................................................................................... 21 0 1 39.00 39 37 2 0 0 0 0 0
..................................................................GATTGGGATCGGGGATTGC...................................................................................................................................................................... 19 0 1 32.00 32 31 0 0 0 1 0 0
..........................................................................TCGGGGATTGCGAACGGCTTT............................................................................................................................................................ 21 1 1 21.00 21 20 0 0 1 0 0 0
......................................................................GGGATCGGGGATTGCGAACGG................................................................................................................................................................ 21 0 1 18.00 18 17 0 1 0 0 0 0
..............TTTTTCGTTCATCATTTGAG......................................................................................................................................................................................................................... 20 0 1 17.00 17 16 0 0 1 0 0 0
.................................................................CGATTGGGATCGGGGATTG....................................................................................................................................................................... 19 0 1 15.00 15 9 4 1 0 1 0 0
.........................................................GACCTTGCCGATTGGGATCGG............................................................................................................................................................................. 21 0 1 14.00 14 5 8 1 0 0 0 0
.................................................................CGATTGGGATCGGGGATTGC...................................................................................................................................................................... 20 0 1 13.00 13 9 4 0 0 0 0 0
..........................................................................TCGGGGATTGCGAACGGCTTC............................................................................................................................................................ 21 0 1 11.00 11 4 7 0 0 0 0 0
....................................................................TTGGGATCGGGGATTGCGAA................................................................................................................................................................... 20 0 1 11.00 11 10 1 0 0 0 0 0
...........................................................................CGGGGATTGCGAACGGCTTC............................................................................................................................................................ 20 0 1 10.00 10 9 1 0 0 0 0 0
.................................................................CGATTGGGATCGGGGATTGCG..................................................................................................................................................................... 21 0 1 10.00 10 8 2 0 0 0 0 0
..................................................................GATTGGGATCGGGGATTGCGAACGG................................................................................................................................................................ 25 0 1 9.00 9 8 1 0 0 0 0 0
..................................................................GATTGGGATCGGGGATTG....................................................................................................................................................................... 18 0 1 9.00 9 9 0 0 0 0 0 0
....................................................................TTGGGATCGGGGATTGCGAAC.................................................................................................................................................................. 21 0 1 8.00 8 6 2 0 0 0 0 0
...................................................................ATTGGGATCGGGGATTGCGA.................................................................................................................................................................... 20 0 1 7.00 7 7 0 0 0 0 0 0
.........................................................................ATCGGGGATTGCGAACGGC............................................................................................................................................................... 19 0 1 5.00 5 5 0 0 0 0 0 0
.............ATTTTTCGTTCATCATTTGAG......................................................................................................................................................................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0
..........................................................................TCGGGGATTGCGAACGGCTT............................................................................................................................................................. 20 0 1 5.00 5 4 1 0 0 0 0 0
.........................................................GACCTTGCCGATTGGGATCG.............................................................................................................................................................................. 20 0 1 5.00 5 1 1 2 0 0 1 0
.....................................................................TGGGATCGGGGATTGCGAACG................................................................................................................................................................. 21 0 1 5.00 5 5 0 0 0 0 0 0
................................................................CCGATTGGGATCGGGGATTGC...................................................................................................................................................................... 21 0 1 4.00 4 3 1 0 0 0 0 0
..................................................................GATTGGGATCGGGGATTGCGT.................................................................................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0
................TTTCGTTCATCATTTGGGAC....................................................................................................................................................................................................................... 20 2 2 3.50 7 0 1 2 4 0 0 0
.....CTCGCTATATTTTTCGTTCATC................................................................................................................................................................................................................................ 22 0 1 3.00 3 2 0 0 0 0 1 0
........................................................................GATCGGGGATTGCGAACGG................................................................................................................................................................ 19 0 1 3.00 3 0 0 3 0 0 0 0
...................................................CAACTGGACCTTGCCGATTG.................................................................................................................................................................................... 20 0 1 3.00 3 0 2 0 0 1 0 0
....................................................AACTGGACCTTGCCGATTGGG.................................................................................................................................................................................. 21 0 1 3.00 3 2 0 0 0 0 1 0
..................................................................GATGGGGATCGGGGATTGC...................................................................................................................................................................... 19 1 1 3.00 3 0 0 3 0 0 0 0
................................................................CCGATTGGGATCGGGGATTGCGAACGGC............................................................................................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0 0
...................................................................ATTGGGATCGGGGATTGCG..................................................................................................................................................................... 19 0 1 3.00 3 2 1 0 0 0 0 0
...........................................................................CGGGGATTGCGAACGGCTTA............................................................................................................................................................ 20 1 1 3.00 3 3 0 0 0 0 0 0
..............................................................TGCCGATTGGGATCGGGGATTGCGAACG................................................................................................................................................................. 28 0 1 3.00 3 3 0 0 0 0 0 0
.....................................................ACTGGACCTTGCCGATTGGG.................................................................................................................................................................................. 20 0 1 3.00 3 1 0 1 1 0 0 0
..................................................................GATTGGGATCGGGGATTGCGAA................................................................................................................................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0
.......................CATCATTTGGGACTTTTGTG................................................................................................................................................................................................................ 20 2 4 2.50 10 0 9 0 0 1 0 0
............................TTTGGGACTTTTGTGCGGCAA.......................................................................................................................................................................................................... 21 2 2 2.00 4 0 4 0 0 0 0 0
.......................................................................GGATCGGGGATTGCGAACGG................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0
................................................................CCGATTGGGATCGGGGATTG....................................................................................................................................................................... 20 0 1 2.00 2 0 0 2 0 0 0 0
..................................................................GATTGGGATCGGGGATTGCGAAC.................................................................................................................................................................. 23 0 1 2.00 2 1 1 0 0 0 0 0
................................................................CCGATTGGGATCGGGGATTGCGAACG................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0
................................................................CCGATTGGGATCGGGGATTGCGAACGG................................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................TGGGATCGGGGATTGCGAACGG................................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................ATTGGGATCGGGGATTGCGAA................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................TTGGGATCGGGGATTGCGAACG................................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................TTGGGATCGGGGATTGCGA.................................................................................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0
..................................................................GATTGGGATCGGGGATTGT...................................................................................................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0
..................................................................GATTGGGATCGGGGATTGCGAACGGC............................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................TGCCGATTGGGATCGGGGATTG....................................................................................................................................................................... 22 0 1 2.00 2 1 1 0 0 0 0 0
.....................................TTTGTGCGGCAATGCAACTGGACCTTG........................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................GCCGATTGGGATCGGGGATTGCGAACG................................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0
..................................................................................TGCGAACGGCTTCCATGACG..................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0
...................................................................................................................................................................................................................AAGGTCTGAAGCTGGTACTG.................... 20 0 1 2.00 2 0 1 0 1 0 0 0
....................................................................................................................................................................................................................................CTGATTAGTCGATCGTTGAA... 20 0 1 2.00 2 2 0 0 0 0 0 0
..................................................................GATTGGGATCGGGGATTGCGTT................................................................................................................................................................... 22 2 2 1.50 3 3 0 0 0 0 0 0
.............................................................TTGCCGATTGGGATCGGGGATTGCGAAC.................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................GACCTTGCCGATTGGGATC............................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................................AGCTGGTACTGATTAGTCGAT.......... 21 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................GACCTTGCCGATTGGGATCGGA............................................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
.......................................TGTGCGGCAATGCAACTGG................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................GGATCGGGGATTGCGAAC.................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................ATCGGGGATTGCGAACGGCTTTC........................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................TGCCGATTGGGATCGGGGATTGCGAACGG................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................TGGACCTTGCCGATTGGGATCG.............................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................GATTGCGATCGGGGATTGCG..................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................ACTGGACCTTGCCGATTGGGATCGG............................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................CTCGGGGATTGCGAACGGCTTC............................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................AAGCTGGTACTGATTAGTCGT........... 21 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGCTCGGAAAGGTCTGAAGC............................ 21 0 1 1.00 1 0 0 0 1 0 0 0
.......................CATCATTTGAGCCTTTTGTG................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................GGGGATTGCGAACGGCTTC............................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
........................................................GGACCTTGCCGATTGGGAT................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0
......................................TTGTGCGGCAATGCAACTGGACC.............................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................................ATCGGGGATTGCGAACGGCTT............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTACTGATTAGTCGATCGTTG..... 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................ATTGGGATCGGGGATTGCGT.................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................................TGTGCGGCAATGCAACTGGACCTTGC.......................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...............................................AATGCAACTGGACCTTGCC......................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................ATCGGGGATTGCGAACGGCT.............................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...................................CTTTTGTGCGGCAATGCAAC.................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................GGATCGGGGATTGCGAACGGC............................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................GATTTGGATCGGGGATTGCG..................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..........TATATTTTTCGTTCATCATTT............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................CGATTGGGATCGGGGATTGT...................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
................................................................CCGATTGGGATCGGGGATTGCGAACGGCT.............................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0
....................................................AACTGGACCTTGCCGATTGGGA................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................CTGCCGATTGGGATCGGGGATT........................................................................................................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
................................................ATGCAACTGGACCTTGCCGA....................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TCCTCGGGGATTGCGAACGGCTTCCATG........................................................................................................................................................ 28 3 1 1.00 1 0 0 1 0 0 0 0
.....................................TTTGTGCGGCAATGCAACTGGACCTTGCC......................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0
.......................................TGTGCGGCAATGCAACTGGAC............................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................ATCGGGGATTGCGAACGGCTTT............................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
................................................................CCGATTGGGATCGGGGATTGCG..................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCTGGTACTGATTAGTCGAT.......... 20 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................CTGAAGCTGGTACTGATTAG............... 20 0 1 1.00 1 1 0 0 0 0 0 0
..........................................GCGGCAATGCAACTGGACCTTG........................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................CGGAAAGGTCTGAAGCTGGT........................ 20 0 1 1.00 1 1 0 0 0 0 0 0
.CTTCCTCGCTATATTTTTCG...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................ATCGGGGATTGCGAACGGCTTTT........................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................ACTGATTAGTCGATCGTTGAA... 21 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................GGCTCGGAAAGGTCTGAAGC............................ 20 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................TGCCGATTGGGATCGGGGATTC....................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................GGGATCGGGGATTGCGAACGGTTTTA........................................................................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................................ATCTCGGGGATTGCGAACGGCTTC............................................................................................................................................................ 24 3 1 1.00 1 1 0 0 0 0 0 0
...........................................................................CGGGGATTGCGAACGGCTT............................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
...............TTTTCGTTCATCATTTGAG......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................GACCTTGCCGATTGGGATCGGG............................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................ATTGCGAACGGCTTCCATGA....................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................GACCTTGCCGATTGGGATCT.............................................................................................................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0
..............TTTTTCGTTCATCATTTGA.......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................TGGGATCGGGGATTGCGAA................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................ATCGGGGATTGCGAACGGCTTC............................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................CGATTGGGATCGGGGATTGCGA.................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...........ATATTTTTCGTTCATCATTTG........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................ATGCAACTGGACCTTGCCG........................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0
......................................................................GGGATCGGGGATTGCGAACGGC............................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...............TTTTCGTTCATCATTTGGGAC....................................................................................................................................................................................................................... 21 2 2 1.00 2 0 0 0 2 0 0 0
..........................................................ACCTTGCCGATTGGGATCGGG............................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................TTGCGAACGGCTTCCATGA....................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................CGATTGGGATCGGGGATTGCGAACGG................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................GATTGGGACCGGGGATTGCG..................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................TTGGGATCGGGGATTGCG..................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................GATGGGGATCGGGGATTG....................................................................................................................................................................... 18 1 3 1.00 3 0 0 3 0 0 0 0
............................................GGCAATGCAACTGGACCTTG........................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................TGCGAACGGCTTTCATGAC...................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................TGGGATCGGGGATTGCGAAC.................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
....................................................AACTGGACCTTGCCGATTGGGATCG.............................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1
.................................................................................TTGCGAACGGCTTCCATGACG..................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................GATCGGGGATTGCGAACGGC............................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................GCCGATTGGGATCGGGGATTGC...................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
..................................ACTTTTGTGCGGCAATGCAAC.................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................CGATTGGGATCGGGGATTGCGAACGGC............................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................TTGCCGATTGGGATCGGGGA.......................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................TGGGATCGGGGATTGCGA.................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................TGGACCTTGCCGATTGGGATC............................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................GGGATCGGGGATTGCGAACG................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0
........GCTATATTTTTCGTTCATCA............................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................GATTGGAATCGGGGATTGCG..................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0
...........................................................................CGGGGATTGCGAACGGCTTCC........................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
................TTTCGTTCATCATTTGGGACT...................................................................................................................................................................................................................... 21 2 2 1.00 2 0 0 0 1 1 0 0
..................................................................GATTGGGATCGGGGATTGCGAACG................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
................................................ATGCAACTGGACCTTGCCGATTG.................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1
..............................................................TTCCGATTGGGATCGGGGATT........................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................TTAGTCGATCGTTGAATAA 19 0 1 1.00 1 1 0 0 0 0 0 0
................................................ATGCAACTGGACCTTGCCGAT...................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................TGCGAACGGCTTCCATGACGA.................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
............................TTTGGGACTTTTGTGCGGCA........................................................................................................................................................................................................... 20 2 3 0.67 2 0 0 0 1 1 0 0
...........................ATTTGGGACTTTTGTGCGG............................................................................................................................................................................................................. 19 2 5 0.60 3 0 3 0 0 0 0 0
..........................................................................TCGGGGATTGCGAACGGGTTT............................................................................................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0 0
.........................................................GACCTTGCCGATTGGGATTA.............................................................................................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0
...........................ATTTGGGACTTTTGTGCGGC............................................................................................................................................................................................................ 20 2 2 0.50 1 0 1 0 0 0 0 0
................................................................................................................................................................AAAGAATATTTAATAAAAAATGT.................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0
.......................CATCATTTGGGACTTTTGTGC............................................................................................................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0
...................................................................ATTGGGATCGGGGATTGT...................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................TGACGACAAGGGATTTTATCT..................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0
..............TTTTTCGTTCATCATTTGGGA........................................................................................................................................................................................................................ 21 2 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................GACGACAATGGATTTTGTT...................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 1
.................................................................................................................................................................................................ATTTTCAGCTGGCTGGGA........................................ 18 1 3 0.33 1 0 0 1 0 0 0 0
...........................................................................................CGACCATGACGACAAGGGATT........................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0
.........................................................GACCTTGCCGATTGGGATCTTT............................................................................................................................................................................ 22 3 4 0.25 1 0 0 1 0 0 0 0
.........................................................................ATCGGCGGTTGCGATCGGCT.............................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................AGTAATTTACAGATGGCTCG.......................................... 20 3 7 0.14 1 0 0 0 0 1 0 0
............................TTTGGGACTTTTGTGCGGC............................................................................................................................................................................................................ 19 2 7 0.14 1 0 1 0 0 0 0 0
................TTTCGTTCATCATTTGGGACC...................................................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 1 0 0 0
..................................................................GATGGGGATCGGGGATTGCA..................................................................................................................................................................... 20 2 9 0.11 1 0 0 1 0 0 0 0
..................................................................GATTGGGATCGGGGATTGCTTT................................................................................................................................................................... 22 3 10 0.10 1 1 0 0 0 0 0 0
.................................................................CGATTGGGATTTGCGATTGCG..................................................................................................................................................................... 21 3 11 0.09 1 0 1 0 0 0 0 0
.....................................................................TGGGATCGGGAAGTGCAAAC.................................................................................................................................................................. 20 3 12 0.08 1 0 1 0 0 0 0 0
..................................................................GATTGGGATCGGGGATTGTTT.................................................................................................................................................................... 21 3 12 0.08 1 1 0 0 0 0 0 0
........................................................GAACCTTGACGATTTGGAT................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

AGAAGGAGCGATATAAAAAGCAAGTAGTAAACTCGGAAAACACGCCGTTACGTTGACCTGGAACGGCTAACCCTAGCCCCTAACGCTTGCCGAAGGTACTGCTGTTCTCTAAAACAAAGTGAGTGATTGATAAAGTGAAAGTTTCTTTGAATTTTGCGAATATCTTATGAATTATTTTTTACATATAAAACATTAAAAGTCGACCGAGCCTTTCCAGACTTCGACCATGACTAATCAGCTAGCAACTTATT
**************************************************.....((((....((((.(((.((((...)))).))).)))).))))(((.((((((....)))))))))......................................((((((((((................)))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 M062
head
 GSM444067
head
 GSM343916
embryo
.....................................................................................................................................................................................................................................ACTAATCAGCTAGCAACTTA.. 20 0 1 3.00 3 3 0 0 0 0 0
....................................................................................................................................................................................................................................GACTAATCAGCTAGCAACT.... 19 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................................................CTTTCCAGACTTCGACCATGA..................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................GAGCCTTTCCAGACTTCGAC.......................... 20 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................CTAATCAGCTAGCAACTTATT 21 0 1 1.00 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................TTCGACCATGACTAATCAGCT........... 21 0 1 1.00 1 0 1 0 0 0 0
.............TAAAAAGTAAGTAGTTAACTC......................................................................................................................................................................................................................... 21 2 2 1.00 2 2 0 0 0 0 0
.......................................................................................................................................................................................................................................TAATCAGCTAGCAACTTATT 20 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................GACCGAGCCTTTCCAGACTTC............................. 21 0 1 1.00 1 0 1 0 0 0 0
............ATAAAAAGTAAGTAGTTAACT.......................................................................................................................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0
...................................................................................................................................................................................................AAAGCCGACAGCGCCTTTCC.................................... 20 3 11 0.09 1 0 0 1 0 0 0
..............AAAAAGTAAGTAGTTAACTCT........................................................................................................................................................................................................................ 21 3 14 0.07 1 0 0 0 0 1 0
..............................................................................................................................................................................TTTTTTACATCTAAAGCA........................................................... 18 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1e:398410-398660 - dps_2601 TCTTCCTCGCTATATTTTTCGTTCATCATTTGAGCCTTTTGTGCGGCAATGCAACTGGACCTTGCCGATTGGGATCGGGGATTGCGAACGGCTTCCATGACGACAAGAGATTTTGTTTCACTCACTA-ACTATTT--CACTTTCAAAGAAAC-----------TTAAAACGCTTA------------------------------TAGAATACTTAAT---AA-------A-AAATGTATATT--TTGTAATTTTCAGCTGGCTCGGAAAGGTCTGAAGCTGGTACTGATTAGTCGATCGTTGAATAA
droPer2 scaffold_30:821452-821698 + dpe_1431 TCTTCCTCGCTATATTTTTCGTTCATCATTTGGGACTTTTGTGCGGCGATGCATCTGGACCTAGCCGATTGAGATCGGGGATTGCGCACGGCTTCCATGACGACAAGAGATTTTGTTTCA----CTA-ACTATTT--CACTTTCAAAGAAAC-----------TTAAAACGCTTA------------------------------TAGAATATTTAAT---AA-------A-AAATTTATATT--TTGTAATTTTCAGCTGGCTCGGAAAGGTCTGAAGCTGGTACTGATTAGTCGATCGTTGAATAA
droWil2 scf2_1100000004909:9669978-9670053 + AAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCATTTC--TTATGTTTTGCAGTTGGCACGCCGTGGTCTAAAACTAGTGCTGATCAGTCGATCGCTGGATAA
droVir3 scaffold_13042:2171971-2172040 - GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATT--TAAAACTTTGCAGTTGGCACGCAAAGGCCTGAAACTGGTTTTGATTAGTCGCTCGTTGGAAAA
droMoj3 scaffold_6359:2072872-2072998 - CACT--------------------------------------------------------------------------------------------------------------------------A-ACATCTA--CAGATCTTAAGCGAC-----------CTTCAAT-------------------------------CTATCATAAAACTCAAC---TA------AGTTATTGCATATT-----TATTTTCTAGTTGGCGCGCAAGGGACTGAAATTGGTATTGATTTCGCGATCCTTGGACAA
droGri2 scaffold_14853:3463080-3463179 - AAAT--------------------------------------------------------------------------------------------------------------------------A-TTAT------------------------------------ATATTTA------------------------------TAAATAACT--------T------TATTATTTGT---C--GTGCAATTTGCAGTTGGCACGCAAAGGAATGAAACTGGTGTTGATTAGTCGCTCGTTGGAGAA
droAna3 scaffold_13117:788613-788666 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCTGGCCCGCCGAGGACTGAAGCTGGTGCTGATCAGCCGATCGCTGGAGAA
droBip1 scf7180000396412:700660-700757 + CTTA--------------------------------------------------------------------------------------------------------------------------TAA------------------------------------------------------------------------------TAATTTTTAAT---AA-------AATAACAATCATCTCCCTATTTTTCTAGCTGGCCAGCCGAGGACTGAAGCTGGTTCTGATCAGTCGTTCGCTGGACAA
droKik1 scf7180000302696:1669152-1669264 + TATT--------------------------------------------------------------------------------------------------------------------------C-CCATTTC--ATA----------AT-----------TAAAAATGATTC------------------------------AGAAATATC--------A------AATTAATTGA---T--GTGTCCTTTTCAGCTGGCTCGCCGGGGCCTGAAACTGGTGCTGATCAGTAGATCACTGGATAA
droFic1 scf7180000454045:1267708-1267813 + CTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCACATA------------------------------TAAAACTTTTAATTTTA-------AATACATTTTTATT--T-AAAACTTTTAGTTGGCGCGTCGGGGACTGAAGTTGGTGCTGATCAGTAGGTCTTTGGAAAA
droEle1 scf7180000491044:643938-644029 - GCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAATACTA-------------------------AATCAATATTTATT--TACACGTTTTTAGCTGGCTCGCAGGGGCTTGAAGCTAGTGCTGATAAGTAGATCCCTGGAAAA
droRho1 scf7180000779479:13821-13933 - AAAA--------------------------------------------------------------------------------------------------------------------------A----------------------AAT-----------TCTCAACCTTTA------------T-GCTTGCTGTATTATA-------------------------AATTAATATTTATT--TAACTCATTTTAGCTGGCTCGCAGGGGACTGAAACTTGTGCTGATCAGTAGATCGTTGGAAAA
droBia1 scf7180000301774:11692-11747 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCTGGCTCGCAGGGGCCTGAAACTGGTGCTGATCAGCAGATCCCTGGAAAA
droTak1 scf7180000415262:118207-118336 + TATT----------------------------------------------------------------------------------------------------------------------------------T--TTCTACTAAAGAAGC-----------ATTAGATAATAA------------------------------GTATATATTTAAA---GAATATTGTAATAACATCTATG--TAACCCATTTTAGCTGGCTCGCCGGGGCCTGAAACTGGTGCTGATCAGTAGATCCCTGGATAA
droEug1 scf7180000409830:55520-55605 + AACA--------------------------------------------------------------------------------------------------------------------------AAA----------------------------------------T-------------------------------ATG------------AA---TA-------A-ATGTTAAAAT------TTTTCCTTAGTTGGCTCGCAGAGGACTGAAACTAGTGCTAATCAGTAGATCCCTGGAAAA
dm3 chrX:7804719-7804791 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATT--TAATCACTTTCAGTTGGCTCGCAGGGGCTTGAAACTGGTGCTGATTAGTAGATCCCTGGAGAA
droSim2 x:7368560-7368632 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATT--TAATTACTTTCAGCTGGCTCGCAGGGGCTTAAAGCTGGTGCTGATTAGTAGATCCCTGGAGAA
droSec2 scaffold_50:91576-91648 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATT--TAATCACTTTCAGCTGGCTCGCAGGGGCTTGAAGCTGGTGCTGATTAGTAGATCCCTGGAGAA
droYak3 X:13508531-13508684 - TTTC-------------------------------------------------------------------------------------------------------------------AGT--CAA-ACTATACCACAATTTGTAGAAAACTTAAGTAATAGTTA--------ATTCAATACATTAA-GCATTCTGAATATGT-------------------------TATTAATAAATATT--TAATCAATTGCAGCTGGCGCGCAGGGGCCTGAAGCTGGTGCTGATTAGTAGATCCCTGGAAAA
droEre2 scaffold_4690:16716324-16716452 + TTAA---------------------------------------------------------------------------------------------------------------------------------------------ATAACAG-----------TTAGAACATTTATACAATACAACACAGCTTCTGAGTATGTA-------------------------AGTTAATAAACATT--TAATCACTTTCAGCTGGCTCGCAGGGGCCTGAAGCTGGTGCTGATTAGTAGATCCCTGGAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TCTTCCTCGCTATATTTTTCGTTCATCATTTGAGCCTTTTGTGCGGCAATGCAACTGGACCTTGCCGATTGGGATCGGGGATTGCGAACGGCTTCCATGACGACAAGAGATTTTGTTTCACTCACTA-ACTATTT--CACTTTCAAAGAAAC-----------TTAAAACGCTTA------------------------------TAGAATACTTAAT---AA-------A-AAATGTATATT--TTGTAATTTTCAGCTGGCTCGGAAAGGTCTGAAGCTGGTACTGATTAGTCGATCGTTGAATAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................GATTGGGATCGGGGATTGCG..............................................................................................................................................................................................................................201203.002030300002101790
..................................................................GATTGGGATCGGGGATTGCGA.............................................................................................................................................................................................................................21139.003900000020370
..................................................................GATTGGGATCGGGGATTGC...............................................................................................................................................................................................................................19132.003200000100310
..........................................................................TCGGGGATTGCGAACGGCTTT.....................................................................................................................................................................................................................21121.002110000000200
......................................................................GGGATCGGGGATTGCGAACGG.........................................................................................................................................................................................................................21118.001801000000170
..............TTTTTCGTTCATCATTTGAG..................................................................................................................................................................................................................................................................................20117.001710000000160
.................................................................CGATTGGGATCGGGGATTG................................................................................................................................................................................................................................19115.00150100014090
.........................................................GACCTTGCCGATTGGGATCGG......................................................................................................................................................................................................................................21114.00140100008050
.................................................................CGATTGGGATCGGGGATTGC...............................................................................................................................................................................................................................20113.00130000004090
..........................................................................TCGGGGATTGCGAACGGCTTC.....................................................................................................................................................................................................................21111.00110000007040
....................................................................TTGGGATCGGGGATTGCGAA............................................................................................................................................................................................................................20111.001100000010100
...........................................................................CGGGGATTGCGAACGGCTTC.....................................................................................................................................................................................................................20110.00100000001090
.................................................................CGATTGGGATCGGGGATTGCG..............................................................................................................................................................................................................................21110.00100000002080
..................................................................GATTGGGATCGGGGATTGCGAACGG.........................................................................................................................................................................................................................2519.0090000001080
..................................................................GATTGGGATCGGGGATTG................................................................................................................................................................................................................................1819.0090000000090
....................................................................TTGGGATCGGGGATTGCGAAC...........................................................................................................................................................................................................................2118.0080000002060
...................................................................ATTGGGATCGGGGATTGCGA.............................................................................................................................................................................................................................2017.0070000000070
.........................................................................ATCGGGGATTGCGAACGGC........................................................................................................................................................................................................................1915.0050000000050
.............ATTTTTCGTTCATCATTTGAG..................................................................................................................................................................................................................................................................................2115.0050000000050
..........................................................................TCGGGGATTGCGAACGGCTT......................................................................................................................................................................................................................2015.0050000001040
.........................................................GACCTTGCCGATTGGGATCG.......................................................................................................................................................................................................................................2015.0050201001010
.....................................................................TGGGATCGGGGATTGCGAACG..........................................................................................................................................................................................................................2115.0050000000050
................................................................CCGATTGGGATCGGGGATTGC...............................................................................................................................................................................................................................2114.0040000001030
..................................................................GATTGGGATCGGGGATTGCGT.............................................................................................................................................................................................................................2114.0040000000040
.....CTCGCTATATTTTTCGTTCATC.........................................................................................................................................................................................................................................................................................2213.0030001000020
........................................................................GATCGGGGATTGCGAACGG.........................................................................................................................................................................................................................1913.0030300000000
...................................................CAACTGGACCTTGCCGATTG.............................................................................................................................................................................................................................................2013.0030000012000
....................................................AACTGGACCTTGCCGATTGGG...........................................................................................................................................................................................................................................2113.0030001000020
................................................................CCGATTGGGATCGGGGATTGCGAACGGC........................................................................................................................................................................................................................2813.0030000000030
...................................................................ATTGGGATCGGGGATTGCG..............................................................................................................................................................................................................................1913.0030000001020
...........................................................................CGGGGATTGCGAACGGCTTA.....................................................................................................................................................................................................................2013.0030000000030
..............................................................TGCCGATTGGGATCGGGGATTGCGAACG..........................................................................................................................................................................................................................2813.0030000000030
.....................................................ACTGGACCTTGCCGATTGGG...........................................................................................................................................................................................................................................2013.0031100000010
..................................................................GATTGGGATCGGGGATTGCGAA............................................................................................................................................................................................................................2213.0030000000030
.......................................................................GGATCGGGGATTGCGAACGG.........................................................................................................................................................................................................................2012.0020000000020
................................................................CCGATTGGGATCGGGGATTG................................................................................................................................................................................................................................2012.0020200000000
..................................................................GATTGGGATCGGGGATTGCGAAC...........................................................................................................................................................................................................................2312.0020000001010
................................................................CCGATTGGGATCGGGGATTGCGAACG..........................................................................................................................................................................................................................2612.0020000000020
................................................................CCGATTGGGATCGGGGATTGCGAACGG.........................................................................................................................................................................................................................2712.0020000000020
.....................................................................TGGGATCGGGGATTGCGAACGG.........................................................................................................................................................................................................................2212.0020000000020
...................................................................ATTGGGATCGGGGATTGCGAA............................................................................................................................................................................................................................2112.0020000000020
....................................................................TTGGGATCGGGGATTGCGAACG..........................................................................................................................................................................................................................2212.0020000000020
....................................................................TTGGGATCGGGGATTGCGA.............................................................................................................................................................................................................................1912.0020000001010
..................................................................GATTGGGATCGGGGATTGT...............................................................................................................................................................................................................................1912.0020000000020
..................................................................GATTGGGATCGGGGATTGCGAACGGC........................................................................................................................................................................................................................2612.0020000000020
..............................................................TGCCGATTGGGATCGGGGATTG................................................................................................................................................................................................................................2212.0020000001010
.....................................TTTGTGCGGCAATGCAACTGGACCTTG....................................................................................................................................................................................................................................................2712.0020000000020
...............................................................GCCGATTGGGATCGGGGATTGCGAACG..........................................................................................................................................................................................................................2712.0020000000020
..................................................................................TGCGAACGGCTTCCATGACG..............................................................................................................................................................................................................2012.0020000002000
............................................................................................................................................................................................................................................................................AAGGTCTGAAGCTGGTACTG....................2012.0021000001000
.............................................................................................................................................................................................................................................................................................CTGATTAGTCGATCGTTGAA...2012.0020000000020
..................................................................GATTGGGATCGGGGATTGCGTT............................................................................................................................................................................................................................2221.5030000000030
.............................................................TTGCCGATTGGGATCGGGGATTGCGAAC...........................................................................................................................................................................................................................2811.0010000000010
.........................................................GACCTTGCCGATTGGGATC........................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................................................................AGCTGGTACTGATTAGTCGAT..........2111.0010000001000
.........................................................GACCTTGCCGATTGGGATCGGA.....................................................................................................................................................................................................................................2211.0010000001000
.......................................TGTGCGGCAATGCAACTGG..........................................................................................................................................................................................................................................................1911.0010100000000
.......................................................................GGATCGGGGATTGCGAAC...........................................................................................................................................................................................................................1811.0010000000010
..............................................................TGCCGATTGGGATCGGGGATTGCGAACGG.........................................................................................................................................................................................................................2911.0010000000010
.......................................................TGGACCTTGCCGATTGGGATCG.......................................................................................................................................................................................................................................2211.0010000001000
.....................................................ACTGGACCTTGCCGATTGGGATCGG......................................................................................................................................................................................................................................2511.0010100000000
....................................................................................................................................................................................................................................................................................AAGCTGGTACTGATTAGTCGT...........2111.0010000000010
...................................................................................................................................................................................................................................................................TGGCTCGGAAAGGTCTGAAGC............................2111.0011000000000
.......................CATCATTTGAGCCTTTTGTG.........................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................GGGGATTGCGAACGGCTTC.....................................................................................................................................................................................................................1911.0010000000010
........................................................GGACCTTGCCGATTGGGAT.........................................................................................................................................................................................................................................1911.0011000000000
......................................TTGTGCGGCAATGCAACTGGACC.......................................................................................................................................................................................................................................................2311.0011000000000
.........................................................................ATCGGGGATTGCGAACGGCTT......................................................................................................................................................................................................................2111.0010000000010
..........................................................................................................................................................................................................................................................................................GTACTGATTAGTCGATCGTTG.....2111.0010000000010
...................................................................ATTGGGATCGGGGATTGCGT.............................................................................................................................................................................................................................2011.0010000000010
.......................................TGTGCGGCAATGCAACTGGACCTTGC...................................................................................................................................................................................................................................................2611.0010000000010
...............................................AATGCAACTGGACCTTGCC..................................................................................................................................................................................................................................................1911.0010100000000
.........................................................................ATCGGGGATTGCGAACGGCT.......................................................................................................................................................................................................................2011.0010000000010
...................................CTTTTGTGCGGCAATGCAAC.............................................................................................................................................................................................................................................................2011.0010000001000
.......................................................................GGATCGGGGATTGCGAACGGC........................................................................................................................................................................................................................2111.0010000000010
..........TATATTTTTCGTTCATCATTT.....................................................................................................................................................................................................................................................................................2111.0010000000010
.................................................................CGATTGGGATCGGGGATTGT...............................................................................................................................................................................................................................2011.0010000001000
................................................................CCGATTGGGATCGGGGATTGCGAACGGCT.......................................................................................................................................................................................................................2911.0010000000010
....................................................AACTGGACCTTGCCGATTGGGA..........................................................................................................................................................................................................................................2211.0010000001000
................................................ATGCAACTGGACCTTGCCGA................................................................................................................................................................................................................................................2011.0010000000010
.....................................TTTGTGCGGCAATGCAACTGGACCTTGCC..................................................................................................................................................................................................................................................2911.0010100000000
.......................................TGTGCGGCAATGCAACTGGAC........................................................................................................................................................................................................................................................2111.0010000000010
.........................................................................ATCGGGGATTGCGAACGGCTTT.....................................................................................................................................................................................................................2211.0010000000010
................................................................CCGATTGGGATCGGGGATTGCG..............................................................................................................................................................................................................................2211.0010000000010
......................................................................................................................................................................................................................................................................................GCTGGTACTGATTAGTCGAT..........2011.0010100000000
.................................................................................................................................................................................................................................................................................CTGAAGCTGGTACTGATTAG...............2011.0010000000010
..........................................GCGGCAATGCAACTGGACCTTG....................................................................................................................................................................................................................................................2211.0010000000010
........................................................................................................................................................................................................................................................................CGGAAAGGTCTGAAGCTGGT........................2011.0010000000010
.CTTCCTCGCTATATTTTTCG...............................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................ATCGGGGATTGCGAACGGCTTTT....................................................................................................................................................................................................................2311.0010000000010
............................................................................................................................................................................................................................................................................................ACTGATTAGTCGATCGTTGAA...2111.0010000000010
....................................................................................................................................................................................................................................................................GGCTCGGAAAGGTCTGAAGC............................2011.0010100000000
..............................................................TGCCGATTGGGATCGGGGATTC................................................................................................................................................................................................................................2211.0010000001000
...........................................................................CGGGGATTGCGAACGGCTT......................................................................................................................................................................................................................1911.0010000000010
...............TTTTCGTTCATCATTTGAG..................................................................................................................................................................................................................................................................................1911.0010000000010
.........................................................GACCTTGCCGATTGGGATCGGG.....................................................................................................................................................................................................................................2211.0010000001000
................................................................................ATTGCGAACGGCTTCCATGA................................................................................................................................................................................................................2011.0010100000000
.........................................................GACCTTGCCGATTGGGATCT.......................................................................................................................................................................................................................................2011.0010100000000
..............TTTTTCGTTCATCATTTGA...................................................................................................................................................................................................................................................................................1911.0010000000010
.....................................................................TGGGATCGGGGATTGCGAA............................................................................................................................................................................................................................1911.0010000000010
.........................................................................ATCGGGGATTGCGAACGGCTTC.....................................................................................................................................................................................................................2211.0010000000010
.................................................................CGATTGGGATCGGGGATTGCGA.............................................................................................................................................................................................................................2211.0010000000010
...........ATATTTTTCGTTCATCATTTG....................................................................................................................................................................................................................................................................................2111.0010000000010
................................................ATGCAACTGGACCTTGCCG.................................................................................................................................................................................................................................................1911.0010000010000
......................................................................GGGATCGGGGATTGCGAACGGC........................................................................................................................................................................................................................2211.0010000000010
..........................................................ACCTTGCCGATTGGGATCGGG.....................................................................................................................................................................................................................................2111.0010000001000
.................................................................................TTGCGAACGGCTTCCATGA................................................................................................................................................................................................................1911.0010000001000
.................................................................CGATTGGGATCGGGGATTGCGAACGG.........................................................................................................................................................................................................................2611.0010000000010
....................................................................TTGGGATCGGGGATTGCG..............................................................................................................................................................................................................................1811.0010000000010
............................................GGCAATGCAACTGGACCTTG....................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................TGGGATCGGGGATTGCGAAC...........................................................................................................................................................................................................................2011.0010000000010
....................................................AACTGGACCTTGCCGATTGGGATCG.......................................................................................................................................................................................................................................2511.0010000100000
.................................................................................TTGCGAACGGCTTCCATGACG..............................................................................................................................................................................................................2111.0010000001000
........................................................................GATCGGGGATTGCGAACGGC........................................................................................................................................................................................................................2011.0010000000010
...............................................................GCCGATTGGGATCGGGGATTGC...............................................................................................................................................................................................................................2211.0010000001000
.................................................................CGATTGGGATCGGGGATTGCGAACGGC........................................................................................................................................................................................................................2711.0010000000010
.............................................................TTGCCGATTGGGATCGGGGA...................................................................................................................................................................................................................................2011.0010000001000
.....................................................................TGGGATCGGGGATTGCGA.............................................................................................................................................................................................................................1811.0010100000000
.......................................................TGGACCTTGCCGATTGGGATC........................................................................................................................................................................................................................................2111.0010000001000
......................................................................GGGATCGGGGATTGCGAACG..........................................................................................................................................................................................................................2011.0010100000000
........GCTATATTTTTCGTTCATCA........................................................................................................................................................................................................................................................................................2011.0010000000010
...........................................................................CGGGGATTGCGAACGGCTTCC....................................................................................................................................................................................................................2111.0010000000010
..................................................................GATTGGGATCGGGGATTGCGAACG..........................................................................................................................................................................................................................2411.0010000000010
................................................ATGCAACTGGACCTTGCCGATTG.............................................................................................................................................................................................................................................2311.0010000100000
.................................................................................................................................................................................................................................................................................................TTAGTCGATCGTTGAATAA1911.0010000000010
................................................ATGCAACTGGACCTTGCCGAT...............................................................................................................................................................................................................................................2111.0010000001000
..................................................................................TGCGAACGGCTTCCATGACGA.............................................................................................................................................................................................................2111.0010100000000
.........................................................GACCTTGCCGATTGGGATTA.......................................................................................................................................................................................................................................2020.5010000001000
...................................................................ATTGGGATCGGGGATTGT...............................................................................................................................................................................................................................1820.5010000000010
.........................................................GACCTTGCCGATTGGGATCTTT.....................................................................................................................................................................................................................................2240.2510100000000
..................................................................GATTGGGATCGGGGATTGCTTT............................................................................................................................................................................................................................22100.1010000000010
..................................................................GATTGGGATCGGGGATTGTTT.............................................................................................................................................................................................................................21120.0810000000010
droPer2
TCTTCCTCGCTATATTTTTCGTTCATCATTTGGGACTTTTGTGCGGCGATGCATCTGGACCTAGCCGATTGAGATCGGGGATTGCGCACGGCTTCCATGACGACAAGAGATTTTGTTTCA----CTA-ACTATTT--CACTTTCAAAGAAAC-----------TTAAAACGCTTA------------------------------TAGAATATTTAAT---AA-------A-AAATTTATATT--TTGTAATTTTCAGCTGGCTCGGAAAGGTCTGAAGCTGGTACTGATTAGTCGATCGTTGAATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................GATTGAGATCGGGGATTGC...............................................................................................................................................................................................................................19132.00320000032
..................................................................GATTGAGATCGGGGATTGCGC.............................................................................................................................................................................................................................21128.00280100027
..................................................................GATTGAGATCGGGGATTGCG..............................................................................................................................................................................................................................20126.00260000026
..................................................................GATTGAGATCGGGGATTG................................................................................................................................................................................................................................1818.008000008
.................................................................CGATTGAGATCGGGGATTG................................................................................................................................................................................................................................1917.007000007
...............................................................................................CATGACGACAAGAGATTTTG.................................................................................................................................................................................................2014.004000103
.......................CATCATTTGGGACTTTTGTG.........................................................................................................................................................................................................................................................................2013.003000003
.........................................................GACCTAGCCGATTGAGATCG.......................................................................................................................................................................................................................................2013.003000003
..........................................................................................................................................................................................................................................ATTTATATT--TTGTAATTTTCAGCTGGCTC...........................................2913.003300000
..........................................................................................GCTTCCATGACGACAAGAG.......................................................................................................................................................................................................1912.002000002
............................TTTGGGACTTTTGTGCGGC.....................................................................................................................................................................................................................................................................1912.002000002
...........................ATTTGGGACTTTTGTGCGGC.....................................................................................................................................................................................................................................................................2012.002000002
.................................................TGCATCTGGACCTAGCCGATT..............................................................................................................................................................................................................................................2112.002000002
.................................................................CGATTGAGATCGGGGATTGCG..............................................................................................................................................................................................................................2112.002000002
...............................................GATGCATCTGGACCTAGCCGATTGA............................................................................................................................................................................................................................................2512.002000002
..............................................CGATGCATCTGGACCTAGCCGTCA..............................................................................................................................................................................................................................................2412.002000002
...........................ATTTGGGACTTTTGTGCGGCGA...................................................................................................................................................................................................................................................................2212.002000002
..........................................................................................................................................................................................................................................................................GAAAGGTCTGAAGCTGGTACTGA...................2312.002200000
..............................................CGATGCATCTGGACCTAGCCG.................................................................................................................................................................................................................................................2111.001000001
..........................................GCGGCGATGCATCTGGACCTAGCC..................................................................................................................................................................................................................................................2411.001100000
...........................................................................................................................................................................................................................................................................AAAGGTCTGAAGCTGGTACTG....................2111.001000001
................................GGACTTTTGTGCGGCGATGC................................................................................................................................................................................................................................................................2011.001000001
...................................................CATCTGGACCTAGCCGATTGA............................................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................................................................AAGGTCTGAAGCTGGTACTGATT.................2311.001100000
.........................TCATTTGGGACTTTTGTGCGG......................................................................................................................................................................................................................................................................2111.001000001
......................................................................................................................................................................................................................................................................CTCGGAAAGGTCTGAAGCTG..........................2011.001010000
.............................................................TAGCCGATTGAGATCGGGGATTGC...............................................................................................................................................................................................................................2411.001000001
.........................................TGCGGCGATGCATCTGGAC........................................................................................................................................................................................................................................................1911.001000001
..............................................................................................................................................................................................................................................................................GGTCTGAAGCTGGTACTGA...................1911.001010000
.................................................................CGATTGAGATCGGGGATTGC...............................................................................................................................................................................................................................2011.001000001
........................................GTGCGGCGATGCATCTGGACC.......................................................................................................................................................................................................................................................2111.001010000
........................................GTGCGGCGATGCATCTGGAC........................................................................................................................................................................................................................................................2011.001000001
......................................................................................CACGGCTTCCATGACGAC............................................................................................................................................................................................................1811.001010000
...........................................................................................................................................................................................................................................................................AAAGGTCTGAAGCTGGTACT.....................2011.001100000
........................................................................................................................................................................................................................................................................CGGAAAGGTCTGAAGCTGGT........................2011.001000001
..........................CATTTGGGACTTTTGTGCGG......................................................................................................................................................................................................................................................................2011.001000001
.....................................................TCTGGACCTAGCCGATTGA............................................................................................................................................................................................................................................1911.001000100
..................................................................GATTGAGATCGGGGATTGCC..............................................................................................................................................................................................................................2011.001000001
...............................................................................................CATGACGACAAGAGATTTT..................................................................................................................................................................................................1911.001000001
................................................ATGCATCTGGACCTAGCCGA................................................................................................................................................................................................................................................2011.001000001
...........................ATTTGGGACTTTTGTGCGG......................................................................................................................................................................................................................................................................1911.001000001
.................................................................CGATTGAGATCGGGGATTGT...............................................................................................................................................................................................................................2011.001000001
........................ATCATTTGGGACTTTTGTGCG.......................................................................................................................................................................................................................................................................2111.001000001
............................................................................GGGGATTGCGCACGGCTTC.....................................................................................................................................................................................................................1911.001000001
...............................................GATGCATCTGGACCTAGCCG.................................................................................................................................................................................................................................................2011.001000001
.......................................................TGGACCTAGCCGATTGAGATCG.......................................................................................................................................................................................................................................2211.001000001
....................................................ATCTGGACCTAGCCGATTG.............................................................................................................................................................................................................................................1911.001000001
droWil2
AAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCATTTC--TTATGTTTTGCAGTTGGCACGCCGTGGTCTAAAACTAGTGCTGATCAGTCGATCGCTGGATAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................CTAGTGCTGATCAGTCGAT..........1913.00301110
.................................................................................................................................................................................................................................................................................CTAAAACTAGTGCTGATCAGTCGAT..........2512.00200110
...................................................................................................................................................................................................................................................................................AAAACTAGTGCTGATCAGTCGATCGCT......2712.00200110
.....................................................................................................................................................................................................................................................................................AACTAGTGCTGATCAGTCGAT..........2111.00100010
..................................................................................................................................................................................................................................................................................TAAAACTAGTGCTGATCAGTCGATCGCT......2811.00101000
..................................................................................................................................................................................................................................................................................TAAAACTAGTGCTGATCAGTCGATCGC.......2711.00101000
.....................................................................................................................................................................................................................................................................GCACGCCGTGGTCTAAAA.............................1811.00100010
...................................................................................................................................................................................................................................................................................AAAACTAGTGCTGATCAGTCGAT..........2311.00100010
.........................................................................................................................................................................................................................................................................................AGTGCTGATCAGTCGATCGCT......2111.00100010
..............................................................................................................................................................................................................................................................................GGTCTAAAACTAGTGCTGATCAGTCGAT..........2811.00100010
.....................................................................................................................................................................................................................................................................................AACTAGTGCTGATCAGTCGA...........2011.00100100
............................................................................................................................................................................................................................................................................................GCTGATCAGTCGATCGCTGGA...2111.00100010
.................................................................................................................................................................................................................................................................GTTGGCACGCCGTGGTCT.................................1811.00100010
.....................................................................................................................................................................................................................................................................GCACGCCGTGGTCTAAAACTAGT........................2311.00100010
droVir3
GT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATT--TAAAACTTTGCAGTTGGCACGCAAAGGCCTGAAACTGGTTTTGATTAGTCGCTCGTTGGAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................TAGTCGCTCGTTGGAAAA1812.002020000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CTGAAACTGGTTTTGATTAGTCGCTC.........2611.001000000000000000000000000000000100000000000000000000000000000000
droMoj3
CACT--------------------------------------------------------------------------------------------------------------------------A-ACATCTA--CAGATCTTAAGCGAC-----------CTTCAAT-------------------------------CTATCATAAAACTCAAC---TA------AGTTATTGCATATT-----TATTTTCTAGTTGGCGCGCAAGGGACTGAAATTGGTATTGATTTCGCGATCCTTGGACAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................AAATTGGTATTGATTTCGCGATC.........2311.001000001
...................................................................................................................................................................................................................................................................................GAAATTGGTATTGATTTCGCGATCCT.......2611.001100000
..................................................................................................................................................................................................................................................................TTGGCGCGCAAGGGACTGAAATTGG.........................2511.001100000
.................................................................................................................................................................................................................................................................GTTGGCGCGCAAGGGACTG................................1911.001000001
.....................................................................................................................................................................................................................................................................................AATTGGTATTGATTTCGCGATCCTT......2511.001100000
droGri2
AAAT--------------------------------------------------------------------------------------------------------------------------A-TTAT------------------------------------ATATTTA------------------------------TAAATAACT--------T------TATTATTTGT---C--GTGCAATTTGCAGTTGGCACGCAAAGGAATGAAACTGGTGTTGATTAGTCGCTCGTTGGAGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCTGGCCCGCCGAGGACTGAAGCTGGTGCTGATCAGCCGATCGCTGGAGAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................GCTGGCCCGCCGAGGACTGAAGC............................2311.001100000
....................................................................................................................................................................................................................................................................GGCCCGCCGAGGACTGAAGCTG..........................2211.001010000
...........................................................................................................................................................................................................................................................................CGAGGACTGAAGCTGGTGCTGATC.................2411.001100000
.............................................................................................................................................................................................................................................................................AGGACTGAAGCTGGTGCTGATCAGC..............2511.001010000
droBip1
CTTA--------------------------------------------------------------------------------------------------------------------------TAA------------------------------------------------------------------------------TAATTTTTAAT---AA-------AATAACAATCATCTCCCTATTTTTCTAGCTGGCCAGCCGAGGACTGAAGCTGGTTCTGATCAGTCGTTCGCTGGACAASizeHit CountTotal NormTotal
No Reads
droKik1
TATT--------------------------------------------------------------------------------------------------------------------------C-CCATTTC--ATA----------AT-----------TAAAAATGATTC------------------------------AGAAATATC--------A------AATTAATTGA---T--GTGTCCTTTTCAGCTGGCTCGCCGGGGCCTGAAACTGGTGCTGATCAGTAGATCACTGGATAASizeHit CountTotal NormTotal
No Reads
droFic1
CTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCACATA------------------------------TAAAACTTTTAATTTTA-------AATACATTTTTATT--T-AAAACTTTTAGTTGGCGCGTCGGGGACTGAAGTTGGTGCTGATCAGTAGGTCTTTGGAAAASizeHit CountTotal NormTotal
No Reads
droEle1
GCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAATACTA-------------------------AATCAATATTTATT--TACACGTTTTTAGCTGGCTCGCAGGGGCTTGAAGCTAGTGCTGATAAGTAGATCCCTGGAAAASizeHit CountTotal NormTotal
No Reads
droRho1
AAAA--------------------------------------------------------------------------------------------------------------------------A----------------------AAT-----------TCTCAACCTTTA------------T-GCTTGCTGTATTATA-------------------------AATTAATATTTATT--TAACTCATTTTAGCTGGCTCGCAGGGGACTGAAACTTGTGCTGATCAGTAGATCGTTGGAAAASizeHit CountTotal NormTotal
No Reads
droBia1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCTGGCTCGCAGGGGCCTGAAACTGGTGCTGATCAGCAGATCCCTGGAAAASizeHit CountTotal NormTotal
No Reads
droTak1
TATT----------------------------------------------------------------------------------------------------------------------------------T--TTCTACTAAAGAAGC-----------ATTAGATAATAA------------------------------GTATATATTTAAA---GAATATTGTAATAACATCTATG--TAACCCATTTTAGCTGGCTCGCCGGGGCCTGAAACTGGTGCTGATCAGTAGATCCCTGGATAASizeHit CountTotal NormTotal
No Reads
droEug1
AACA--------------------------------------------------------------------------------------------------------------------------AAA----------------------------------------T-------------------------------ATG------------AA---TA-------A-ATGTTAAAAT------TTTTCCTTAGTTGGCTCGCAGAGGACTGAAACTAGTGCTAATCAGTAGATCCCTGGAAAASizeHit CountTotal NormTotal
No Reads
dm3
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATT--TAATCACTTTCAGTTGGCTCGCAGGGGCTTGAAACTGGTGCTGATTAGTAGATCCCTGGAGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................ACTGGTGCTGATTAGTAGATCCCTGGA...2713.0030000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................AGGGGCTTGAAACTGGTGCTGATT.................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................AGGGGCTTGAAACTGGTGCT.....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TGCTGATTAGTAGATCCCTGGAGAA2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TGGTGCTGATTAGTAGATCCCTGGA...2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCGCAGGGGCTTGAAACTGGTGCT.....................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................AGGGGCTTGAAACTGGTGCTGAT..................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GAAACTGGTGCTGATTAGTAGATCCC.......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................GTTGGCTCGCAGGGGCTTGA...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TTGGCTCGCAGGGGCTTGAAACTGGT........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................TGGTGCTGATTAGTAGATCCCTGGAG..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TGAAACTGGTGCTGATTAGTA.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TGGTGCTGATTAGTAGATCCC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GTGCTGATTAGTAGATCC........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CTGGTGCTGATTAGTAGATCCCTGG....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................CTGATTAGTAGATCCCTGGA...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CTGGTGCTGATTAGTAGATCCCTGGAGA.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TGAAACTGGTGCTGATTAGTAGA...........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TGAAACTGGTGCTGATTAGT..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GGTGCTGATTAGTAGATCCCTGG....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TGGCTCGCAGGGGCTTGAAACTGGT........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................ATCACTTTCAGTTGGCTCGCAGGG.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TGGCTCGCAGGGGCTTGAAACTGG.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TGGTGCTGATTAGTAGATCCCTGGAGA.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TGGTGCTGATTAGTAGATCCCTGGAGAA2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TGGTGCTGATTAGTAGATCCCT......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CTTGAAACTGGTGCTGATTAGT..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GCTCGCAGGGGCTTGAAAC............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................GGGGCTTGAAACTGGTGCT.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TGAAACTGGTGCTGATTAGTAGATCCC.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGATTAGTAGATCCCTGGAGA.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GGCTTGAAACTGGTGCTGATTAGTAGA...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTGAAACTGGTGCTGATTAGTAGATC.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GGCTTGAAACTGGTGCTGATTA................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GCTTGAAACTGGTGCTGATTAGTAGA...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TCACTTTCAGTTGGCTCGCAGGGGC...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GCTGATTAGTAGATCCCTGGC...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GAAACTGGTGCTGATTAGTAGATC.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTGAAACTGGTGCTGATTAGTAGATCT........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................ACTGGTGCTGATTAGTAGATCCC.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CTTGAAACTGGTGCTGATT.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GATTAGTAGATCCCTGGAGA.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCGCAGGGGCTTGAAACTGGTGCTGAAA.................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GCTTGAAACTGGTGCTGATTAGT..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TGGCTCGCAGGGGCTTGAAACTGGTGC......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GCTGATTAGTAGATCCCTGGA...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATT--TAATTACTTTCAGCTGGCTCGCAGGGGCTTAAAGCTGGTGCTGATTAGTAGATCCCTGGAGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................TGGCTCGCAGGGGCTTAAAGCT...........................2211.00100000000001000000
..........................................................................................................................................................................................................................................................................................GTGCTGATTAGTAGA...........1511.00100000000001000000
.................................................................................................................................................................................................................................................................................TTAAAGCTGGTGCTGATTAGTAGATCC........2711.00100000000001000000
...................................................................................................................................................................................................................................................................TGGCTCGCAGGGGCTTAAAGCTGG.........................2411.00100000000001000000
droSec2
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATT--TAATCACTTTCAGCTGGCTCGCAGGGGCTTGAAGCTGGTGCTGATTAGTAGATCCCTGGAGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTTC-------------------------------------------------------------------------------------------------------------------AGT--CAA-ACTATACCACAATTTGTAGAAAACTTAAGTAATAGTTA--------ATTCAATACATTAA-GCATTCTGAATATGT-------------------------TATTAATAAATATT--TAATCAATTGCAGCTGGCGCGCAGGGGCCTGAAGCTGGTGCTGATTAGTAGATCCCTGGAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................CTGGTGCTGATTAGTAGATCCCTGT....2511.00101000000000
.......................................................................................................................................................................................................................................................................GCGCAGGGGCCTGAAGCTGGT........................2111.00100000010000
droEre2
TTAA---------------------------------------------------------------------------------------------------------------------------------------------ATAACAG-----------TTAGAACATTTATACAATACAACACAGCTTCTGAGTATGTA-------------------------AGTTAATAAACATT--TAATCACTTTCAGCTGGCTCGCAGGGGCCTGAAGCTGGTGCTGATTAGTAGATCCCTGGAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................GCTGATTAGTAGATCCCTG.....1911.0010000010
..........................................................................................................................................................................................................................................................................CAGGGGCCTGAAGCTGGTGCTG....................2211.0011000000
..............................................................................................................................................................................................................................................................................GGCCTGAAGCTGGTGCTGATT.................2111.0010100000
...............................................................................................................................................................................................................................................................................GCCTGAAGCTGGTGCTGATTAGTA.............2411.0010100000

Generated: 05/18/2015 at 04:59 AM