dps_2595

exon [dpse_GLEANR_11632:5]; CDS [Dpse\GA14368-cds]; CDS [Dpse\GA14368-cds]; exon [dpse_GLEANR_11632:4]; intron [Dpse\GA14368-in]

Name	Class	Family	Strand
(CGAAT)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------------################################################## TGGCTATAGCAAGGAGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGATCAATCAATTGAATCGAATCGAATCGAATGATAAACTCCATTAACTGTTTGCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTTCAAGGAATGAAGCTC ************************************************((((((((.(((.((...((((.((((.(((...))).)))).))))....)).)))..))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	GSM343916 embryo	GSM444067 head
................................................................................................TAAGCTCAATTAACTGTTTGCAGT.................................................	24	3	1	4.00	4	2	2	0	0
................................................................................................TAAGCTCAATTAACTGTTTGCA...................................................	22	2	1	4.00	4	4	0	0	0
................................................................................................TAAGCTCAATTAACTGTTTGCAG..................................................	23	2	1	4.00	4	3	1	0	0
......................................................................................GATCGAATGATAAACTCCAT...............................................................	20	1	1	3.00	3	1	2	0	0
................................................................................................TAAGCTCAATTCACTGTTTGCA...................................................	22	3	2	2.00	4	4	0	0	0
................................................................................................TAAGCTCAATTCACTGTTTGCAG..................................................	23	3	1	2.00	2	2	0	0	0
................................................................................................TAAGCTCAACTAACTGTTTGCA...................................................	22	3	1	2.00	2	2	0	0	0
..............................................................................................................................CATCTTCTCCGAGAATCGTCGCCTGC.................	26	0	1	2.00	2	2	0	0	0
.................................................................................................................................CTTCTCCGAGAATCGTCGCCTGC.................	23	0	1	1.00	1	1	0	0	0
.................................................................................................................................CTTCTCCGAGAATCGTCGCCTGCTT...............	25	0	1	1.00	1	1	0	0	0
.........................................................................................................................................AGAATCGTCGCCTGCTTCAA............	20	0	1	1.00	1	1	0	0	0
.....................CAACCACCACGACAACGAATC...............................................................................................................................	21	0	1	1.00	1	1	0	0	0
..........................................................................................................................................GAATCGTCGCCTGCTTCAAGGA.........	22	0	1	1.00	1	1	0	0	0
................................................................................................TAAGCTCAACTAACTGTTTGCAGC.................................................	24	3	1	1.00	1	0	1	0	0
...............GGACAACAACCACCACGACAAC....................................................................................................................................	22	0	1	1.00	1	1	0	0	0
................................................................................................TAAGCTCAACTAACTGTTTGCAG..................................................	23	3	1	1.00	1	0	1	0	0
....................................................................................................................................CTCCGAGAATCGTCGCCTG..................	19	0	1	1.00	1	1	0	0	0
....................................................................................................................................CTCCGAGAATCGTCGCCTGC.................	20	0	1	1.00	1	1	0	0	0
.......AGCAAGGAGGACAACAACCACC............................................................................................................................................	22	0	1	1.00	1	0	0	0	1
...............................................................................................................................ATCTTCTCCGAGAATCGTCGCCTG..................	24	0	1	1.00	1	1	0	0	0
....................................................................................................................................CTCCGAGAATCGGCGCCTGCTT...............	22	1	1	1.00	1	0	0	1	0
................................................................................................TAAGCTCAATTAACTGTTTGCAGA.................................................	24	3	1	1.00	1	1	0	0	0
..........AAGGAGGACAACAACCAC.............................................................................................................................................	18	0	1	1.00	1	0	1	0	0
..................................................................................................AGCTCAATTAACTGTTTGCAG..................................................	21	2	1	1.00	1	1	0	0	0
...............................GACAACGAATCGATACAGT.......................................................................................................................	19	0	1	1.00	1	1	0	0	0
..........................................................................................................................................GAATCGTCGCCTGCTTCAAGGAATGAA....	27	0	1	1.00	1	1	0	0	0
..................................................................................................AGCTCAATTAACTGTTTGCAGT.................................................	22	3	2	0.50	1	1	0	0	0
...............................................................................................ATAAGCTCAATTAACTGTTT......................................................	20	2	2	0.50	1	1	0	0	0
......................................................GTTGGGATTGATCAATCAATTGA............................................................................................	23	3	2	0.50	1	1	0	0	0
.........................................................................................CGAATGATAAACTCCATGG.............................................................	19	2	4	0.25	1	0	1	0	0
.................................................................................................AAGCTCAATTCACTGTTTGCA...................................................	21	3	4	0.25	1	1	0	0	0
.................................................................................................................................CTTCTCCGACGATCGTCG......................	18	2	4	0.25	1	1	0	0	0

ACCGATATCGTTCCTCCTGTTGTTGGTGGTGCTGTTGCTTAGCTATGTCACATTCGTCGCTAACTAGTTAGTTAACTTAGCTTAGCTTAGCTTACTATTTGAGGTAATTGACAAACGTCGGCTACCGTAGAAGAGGCTCTTAGCAGCGGACGAAGTTCCTTACTTCGAG ************************************************((((((((.(((.((...((((.((((.(((...))).)))).))))....)).)))..))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902011 testis	M040 female body
.........................................................................................................................CTACCGTAGAAGATGAACTTA...........................	21	3	17	0.06	1	1	0
..................................................................................................CAGGGGTAATTGACAAACG....................................................	19	3	18	0.06	1	0	1

Species	Coordinate	ID	Alignment
dp5	XL_group1a:9060572-9060740 +	dps_2595	TGGCTA---------T--AGCAAGGAGG--ACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTTCAAGGAATGAAGCTC
droPer2	scaffold_15:1454028-1454195 +		TGGCTA---------T--GGCAAGGAGG--ACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTCCAAGGA-TGAAGCTC
droWil2	scf2_1100000004515:162860-163004 -		CGGCT---A------T--GCCGATGA-----------------GGACAATGAATCCATGCAATGTGAGTT--TTTTGATTTTCTTG--T-----------TTAA------TTTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCTCGGAGAATCGTCGTTTACTGCAGGGCATGCAATTA
droVir3	scaffold_12970:7925690-7925863 -	dvi-mir-1007	AGGTTAAAA-----------GGAGGTGCTGTAACTAATAATGTTGACAACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCA-TTTGAC--CATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCTCGAACAATACTCAACTGTTGCGCGGCATGAAACTG
droMoj3	scaffold_6482:1600617-1600769 +	dmo_86	TAGCTCCA-------------AATAC-----------------CGACAATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTGGCTA--CTTGGC---CGTATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGGCGCAGAGTGCTCAAATGTTGGACGGCATGAAGCTG
droGri2	scaffold_15203:11134547-11134700 +	dgr_50	TGGCTA--------------TGAAGA-----------------TGACAGCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTGGTTA---TCCGACTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCTCGGACAACCGTCGACCGCTGCAAGGGATGAAGCTT
droAna3	scaffold_13334:1054349-1054504 +	dan_140	CGGCTACCGTGGTCCC--GGGGACGA-----------------CGACAACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGCTG
droBip1	scf7180000396733:702507-702662 +		TGGATACCGGGGACCT--GGCGACGA-----------------GGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGTTG
droKik1	scf7180000302395:538327-538490 -		CGGTTATCATCCA--TCGGGCGAGGA--------------CAATGACAACGAATCAGTGCAGTGTAAGCAGTGCTTGAACTCGATC--TCGT-ATT-AATTGGT------CTTCTGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGACTGCAGCTG
droFic1	scf7180000454077:618915-619066 -		CGGCTTCCG------T--GGCGAGGA-----------------TGACAACGAATCCGTACAGTGTAAGCAGTGCTTGAACTCGATC--TTGG-ATC---TTGGA------C-CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTGCTCCAGGGACTCCAACTG
droEle1	scf7180000490214:749256-749408 +		TGGTTTCCG------T--AACGAGGA-----------------CGACAACGAGTCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGAAGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGAATGCAGCTG
droRho1	scf7180000780082:45635-45787 +		CGGATTCCG------T--GGCGAAGA-----------------TGACAGCGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTAGA------TTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGAATGCAGCTG
droBia1	scf7180000302187:364110-364255 +		CGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTGCAGTGTAAGCAGTGTTTGAACTCGATC--TTG-----------GA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGTCGACTGCTCCAGGGACTGCAGCTG
droTak1	scf7180000415158:280511-280663 +		CGGCTTCCG------C--GGCGAGGA-----------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--CCGG-ATC---CTGAA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTCCTCCAGGGTTTCCAGCTG
droEug1	scf7180000408193:314901-315053 +		TGGATTCCG------C--GGCGAGGA-----------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATATTTTCGGAGAATCGAAGACTGCTCCAGGGAATGCAGCTG
dm3	chrX:21167362-21167514 -	dme-mir-1007	TGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCTCGGAGAATCGACGACTGCTTCAGGGATTGCAGCTG
droSim2	x:19899715-19899867 -	dsi_283	TGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG
droSec2	scaffold_8:3474369-3474521 -	dse_273	TGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG
droYak3	X:20343086-20343238 -	dya_95	CGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TAGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG
droEre2	scaffold_4690:17696719-17696871 -	der_61	TGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TGGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGTTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

TGGCTA---------T--AGCAAGGAGG--ACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTTCAAGGAATGAAGCTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................CATCTTCTCCGAGAATCGTCGCCTGC.................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................CTTCTCCGAGAATCGTCGCCTGC.................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................CTTCTCCGAGAATCGTCGCCTGCTT...............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................AGAATCGTCGCCTGCTTCAA............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................CAACCACCACGACAACGAATC...........................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................GAATCGTCGCCTGCTTCAAGGA.........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GG--ACAACAACCACCACGACAAC................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CTCCGAGAATCGTCGCCTG..................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CTCCGAGAATCGTCGCCTGC.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................AGCAAGGAGG--ACAACAACCACC........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................ATCTTCTCCGAGAATCGTCGCCTG..................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................AAGGAGG--ACAACAACCAC.........................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................GACAACGAATCGATACAGT...................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................GAATCGTCGCCTGCTTCAAGGAATGAA....	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................CGAATGATAAACTCCATGG.................................................................	19	4	0.25	1	0	0	1	0	0	0	0	0	0	0

droPer2

TGGCTA---------T--GGCAAGGAGG--ACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTCCAAGGA-TGAAGCTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....A---------T--GGCAAGGAGG--ACAACAACCACCAC......................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................CTCCGAGAATCGTCGCCTG..................	19	1	2.00	2	2	0	0	0	0	0
.....A---------T--GGCAAGGAGG--ACAACAAC............................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................CTTCTCCGAGAATCGTCGCCTG..................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................GGCATCTTCTCCGAGAATCGTCGCCTGC.................	28	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................GGCATCTTCTCCGAGAATCGTCGCCTG..................	27	1	1.00	1	1	0	0	0	0	0
...............................................................GTAAGCAGCGATTGA--TCAAT.............................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................GAGG--ACAACAACCACCACGA....................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0

droWil2

CGGCT---A------T--GCCGATGA-----------------GGACAATGAATCCATGCAATGTGAGTT--TTTTGATTTTCTTG--T-----------TTAA------TTTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCTCGGAGAATCGTCGTTTACTGCAGGGCATGCAATTA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................GATGGCATCTTCTCGGAGAATCGTC.......................	25	1	8.00	8	0	0	4	4	0
.....................................................................................................................................................................ATCGTCGTTTACTGCAGGGC.........	20	1	3.00	3	0	1	0	2	0
.....................................................................................................................................................GGCATCTTCTCGGAGAATCGT........................	21	1	2.00	2	0	0	2	0	0
.....................................................................................................................................................................ATCGTCGTTTACTGCAGGGCATGC.....	24	1	2.00	2	0	0	1	1	0
.......................................................................................................................................................................CGTCGTTTACTGCAGGGCA........	19	1	1.00	1	0	0	0	1	0
................................................................................................................................................CTGATGGCATCTTCTCGGA...............................	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................GAATCGTCGTTTACTGCAGGGC.........	22	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................TCTTCTCGGAGAATCGTCGTTTACTGC..............	27	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................GTTTACTGCAGGGCATGC.....	18	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................GAGAATCGTCGTTTACTGCA.............	20	1	1.00	1	1	0	0	0	0
..................................................................................................................................................GATGGCATCTTCTCGGAGAAT...........................	21	1	1.00	1	0	0	0	0	1
...............................................................................................................................................................CGGAGAATCGTCGTTTACTGCAGGGC.........	26	1	1.00	1	0	0	0	1	0
..................................................................................................................................................GATGGCATCTTCTCGGAG..............................	18	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................GGCATCTTCTCGGAGAATCGTC.......................	22	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................AATCGTCGTTTACTGCAGGGC.........	21	1	1.00	1	0	0	0	1	0
.................................................................................................................................................TGATGGCATCTTCTCGGAGAATC..........................	23	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................TTCTCGGAGAATCGTCGTTTACTGC..............	25	1	1.00	1	1	0	0	0	0

droVir3

AGGTTAAAA-----------GGAGGTGCTGTAACTAATAATGTTGACAACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCA-TTTGAC--CATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCTCGAACAATACTCAACTGTTGCGCGGCATGAAACTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................GTAAGCAGTGCTTGAGCTTA...............................................................................................................	20	1	1669.00	1669	3	1	115	0	1	53	3	103	12	120	5	0	1	0	14	10	6	16	7	6	17	18	18	8	5	0	6	1	55	193	51	168	0	49	1	3	0	1	4	100	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	19	468	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGT.................................................	22	1	1152.00	1152	2	1	192	12	3	11	5	3	0	3	0	0	0	2	26	30	15	36	17	5	7	20	49	10	13	12	17	24	45	172	35	148	0	16	5	7	3	0	6	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	7	104	22	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................	22	1	264.00	264	0	0	61	0	0	3	0	0	0	0	0	0	0	0	10	8	5	11	5	3	1	9	15	1	0	1	2	1	11	49	16	33	0	0	0	1	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	3	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................	23	1	189.00	189	0	0	24	11	0	3	2	1	0	1	0	0	0	0	7	2	1	2	2	2	0	1	5	1	4	3	1	5	7	32	6	28	1	10	1	0	0	1	1	8	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	2	3	7	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................	23	1	177.00	177	0	0	84	5	0	0	0	3	0	0	0	0	0	0	1	2	2	3	1	2	1	0	1	0	2	0	2	0	7	31	3	17	1	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	2	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAG..................................................	21	1	138.00	138	0	0	93	2	0	0	0	1	0	0	0	0	0	0	1	2	0	2	2	0	0	3	2	0	1	1	0	1	2	9	2	10	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
...............................................................GTAAGCAGTGCTTGAGCTT................................................................................................................	19	1	116.00	116	0	1	34	1	0	16	2	0	0	0	0	0	0	0	1	1	0	6	0	0	0	1	5	0	0	0	1	0	2	8	3	7	0	8	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0
...............................................................GTAAGCAGTGCTTGAGCTTAT..............................................................................................................	21	1	71.00	71	0	0	5	0	0	2	0	0	0	0	1	0	0	0	6	2	0	2	3	3	0	3	5	0	0	1	0	1	9	7	3	8	0	5	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGA.................................................	22	1	66.00	66	0	0	11	1	0	1	0	0	0	0	0	0	0	0	3	1	0	0	1	0	1	1	3	2	2	1	2	0	6	10	2	9	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................	21	1	53.00	53	2	8	7	0	0	0	0	0	0	0	0	0	0	0	2	2	1	0	4	2	0	2	3	0	0	0	0	1	4	7	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTC................................................	23	1	52.00	52	0	0	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	6	0	0	0	0	0	1	0	4	10	6	7	0	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................	22	1	48.00	48	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	3	0	0	0	0	0	3	10	1	5	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCA...................................................	20	1	46.00	46	0	0	25	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	1	0	2	0	0	0	0	0	1	0	5	2	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................	24	1	37.00	37	0	0	15	8	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	2	1	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................	20	1	30.00	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	3	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................	21	1	29.00	29	0	0	6	0	0	0	0	0	0	0	0	0	0	0	2	3	1	2	2	2	0	2	2	0	0	0	0	0	0	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................GTAAGCAGTGCTTGAGCTTATT.............................................................................................................	22	1	26.00	26	0	0	3	0	0	1	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	1	0	0	0	1	0	2	3	4	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0
........................................................................................................................GCTCAATTAACTGTTT----GCAGT.................................................	21	1	20.00	20	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCT.................................................................................................................	18	1	20.00	20	0	0	12	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTT................................................	23	1	18.00	18	0	0	9	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0
...............................................................GTAAGCAGTGCTTGAGCTTT...............................................................................................................	20	1	17.00	17	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	2	0	0	0	0	0	0	2	1	4	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGTC................................................	24	1	16.00	16	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	4	4	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTC................................................	25	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	2	9	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTTAA..............................................................................................................	21	1	14.00	14	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	3	1	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................GCTCAATTAACTGTTT----GCAG..................................................	20	1	11.00	11	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................	23	1	10.00	10	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GC....................................................	19	1	9.00	9	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................	24	1	9.00	9	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
......................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................	20	1	9.00	9	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGC.................................................	22	1	8.00	8	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGA.................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TAAGCAGTGCTTGAGCTTA...............................................................................................................	19	1	6.00	6	0	0	4	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTAA...............................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAT..................................................	23	1	6.00	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTTATTC--TCT.......................................................................................................	26	1	5.00	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGTA................................................	24	1	4.00	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTA................................................	23	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTTC...............................................................................................................	20	1	4.00	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTTC...............................................	24	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
...............................................................GTAAGCAGTGCTTGAGCTTATC.............................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTCC...............................................	26	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTCT...............................................	24	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AAGCAGTGCTTGAGCTTA...............................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.....................................................................................................................TAAGCTCAATTAACTGTT...........................................................	18	1	4.00	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GCTCAATTAACTGTTT----GCA...................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTTG...............................................................................................................	20	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................CTCAATTAACTGTTT----GCAGT.................................................	20	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCATT.................................................	22	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CTCAATTAACTGTTT----GCAG..................................................	19	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAAAA................................................	25	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTTATA.............................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGTCC...............................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGTT................................................	24	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTTAAA.............................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAA..................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGC.................................................	23	1	3.00	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA...............................................	26	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATACTCAACTGTTGCGCGGCATGA.....	24	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTC................................................................................................................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GCTCAATTAACTGTTT----GCAGTC................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCC...................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTCC...............................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----......................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
...............................................................................................................................................................CGAACAATACTCAACTGTTGCGC............	23	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................CAATTAACTGTTT----GCAGT.................................................	18	3	1.67	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTCA...............................................	24	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCT...................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................TAAGCAGTGCTTGAGCTT................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTTATTC--TC........................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGTCT...............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTA................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCATTC................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAC..................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TC--TCTGGCTTCA-TTTGAC--CATTTT.................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAA..................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TC--TCTGGCTTCA-TTTGAC--CAT....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GTGCTTGAGCTTATTC--TCT.......................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----T.....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CTCAATTAACTGTTT----GCAGTT................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCACA.................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTTATTC--..........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................TGGCTTCA-TTTGAC--CATTTTCTGATA...........................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGAAA...............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT.................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCATTA................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CTAATAATGTTGACAACGAATC...........................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TTCTGATAAGCTCAATTAACTGTTT----GC....................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................C--TCTGGCTTCA-TTTGAC--CAT....................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................CTGGCTTCA-TTTGAC--CATTTTCTGATA...........................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AGTGCTTGAGCTTATTC--TCT.......................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................CTGATAAGCTCAATTAACTGTTT----GC....................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CATTTTCTGATAAGCTCAATT..................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TCAATTAACTGTTT----GCAGT.................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TTGAC--CATTTTCTGATAAG.........................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----C.....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................................GCTCAATTAACTGTTT----GCAGA.................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTTATTC--TCTGGC....................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................CATTTTCTGATAAGCTCAATTAACT..............................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGCAGTGCTTGAGCTTATT.............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TGATAAGCTCAATTAACTGTTT----GCAGT.................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AATACTCAACTGTTGCGCGG..........	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GTTGCGCGGCATGAAACTG	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGAT................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GCAGTGCTTGAGCTTATTC--TCT.......................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TTCTGATAAGCTCAATTAACTGTT...........................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TCTGATAAGCTCAATTAACTGTTT----GCA...................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TATTC--TCTGGCTTCA-TTTGAC--.......................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................CTCTCGAACAATACTCAACT...................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTCT...............................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GAC--CATTTTCTGATAAGCT.......................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCACT.................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGTTA...............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....TAAAA-----------GGAGGTGCTGTAAC................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.GGTTAAAA-----------GGAGGTGCTGTAAC................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................C--CATTTTCTGATAAGCTCAATT..................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAT..................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCATT.................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TGTAAGCAGTGCTTGAGCT.................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................GGATGCCGCCCTCTCGAAC..............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ATTC--TCTGGCTTCA-TTTGAC--CATTTTC................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA.................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA...............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GCTCAATTAACTGTTT----GC....................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TAAGCAGTGCTTGAGCTTATT.............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTTT...............................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AAGCAGTGCTTGAGC..................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAAT.................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGAAA...............................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGCTTGAGCTTTA..............................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TAGCTCCA-------------AATAC-----------------CGACAATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTGGCTA--CTTGGC---CGTATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGGCGCAGAGTGCTCAAATGTTGGACGGCATGAAGCTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCA...................................................	22	1	574.00	574	547	4	6	9	4	4
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAGT.................................................	24	1	280.00	280	131	4	4	9	119	13
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAG..................................................	23	1	255.00	255	220	6	3	7	14	5
.....................................................................................................................TAAGCTCAACTAACTGTTT----GC....................................................	21	1	231.00	231	198	0	11	12	7	3
......................................................................................................................AAGCTCAACTAACTGTTT----GCA...................................................	21	1	48.00	48	48	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----G.....................................................	20	1	46.00	46	30	1	8	4	0	3
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAGC.................................................	24	1	41.00	41	1	0	0	1	39	0
...............................................................GTAAGCAGTGTTTGAACTAAATC--..........................................................................................................	23	1	30.00	30	5	0	0	0	11	14
......................................................................................................................AAGCTCAACTAACTGTTT----GCAG..................................................	22	1	20.00	20	20	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAC..................................................	23	1	12.00	12	9	0	0	0	3	0
......................................................................................................................AAGCTCAACTAACTGTTT----GCAGT.................................................	23	1	12.00	12	11	0	0	0	1	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCACT.................................................	24	1	11.00	11	5	0	0	0	6	0
...........................................................................................................CGTATATTGATAAGCTCAACTAACTGTT...........................................................	28	1	10.00	10	10	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTAA...............................................................................................................	20	1	10.00	10	1	0	0	0	0	9
......................................................................................................................AAGCTCAACTAACTGTTT----GC....................................................	20	1	10.00	10	10	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTAAA..............................................................................................................	21	1	6.00	6	2	0	0	0	0	4
...............................................................GTAAGCAGTGTTTGAACTAAATC--TCT.......................................................................................................	26	1	6.00	6	3	0	0	0	0	3
...............................................................GTAAGCAGTGTTTGAACTAAAT.............................................................................................................	22	1	6.00	6	2	0	0	0	0	4
.............................................................................................................TATATTGATAAGCTCAACTAACTGTT...........................................................	26	1	5.00	5	4	0	0	0	0	1
.......................................................................................................................AGCTCAACTAACTGTTT----GCA...................................................	20	1	5.00	5	5	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTAAATC--TCTGG.....................................................................................................	28	1	5.00	5	3	0	0	0	0	2
................................................................................TAAATC--TCTGGCTA--CTTGGC---.......................................................................................	20	1	5.00	5	5	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----......................................................	19	1	5.00	5	5	0	0	0	0	0
....................................................................................................................ATAAGCTCAACTAACTGTTT----GCAG..................................................	24	1	4.00	4	4	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAA..................................................	23	1	4.00	4	3	0	0	0	1	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAT..................................................	23	1	4.00	4	3	0	0	0	0	1
......................................................................................................................AAGCTCAACTAACTGTTT----G.....................................................	19	1	4.00	4	4	0	0	0	0	0
...............................................................................CTAAATC--TCTGGCTA--CTTGGC---.......................................................................................	21	1	4.00	4	4	0	0	0	0	0
..........................................................................................................................TCAACTAACTGTTT----GCAGT.................................................	19	1	3.00	3	1	0	0	1	1	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAGTT................................................	25	1	3.00	3	2	0	0	0	1	0
....................................................................................................................ATAAGCTCAACTAACTGTTT----GCA...................................................	23	1	3.00	3	3	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTA................................................................................................................	19	1	3.00	3	1	1	0	0	0	1
..................................................................................................................TGATAAGCTCAACTAACTGTTT----GC....................................................	24	1	3.00	3	3	0	0	0	0	0
...........................................................................................................CGTATATTGATAAGCTCAACTAACT..............................................................	25	1	3.00	3	3	0	0	0	0	0
.................................................................................AAATC--TCTGGCTA--CTTGGC---.......................................................................................	19	1	3.00	3	3	0	0	0	0	0
....................................................................................................................ATAAGCTCAACTAACTGTTT----GC....................................................	22	1	3.00	3	2	0	0	1	0	0
.....................................................................................................................TAAGCTCAACTAACTGTT...........................................................	18	1	2.00	2	2	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTAAATC--T.........................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.....................................................................AGTGTTTGAACTAAATC--TCTGGCTA--CT..............................................................................................	27	1	2.00	2	2	0	0	0	0	0
.....................................................................AGTGTTTGAACTAAATC--TCTGGC....................................................................................................	23	1	2.00	2	2	0	0	0	0	0
............................................................................GAACTAAATC--TCTGGCTA--CTTGG...........................................................................................	23	1	2.00	2	2	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTAAATC--TCTG......................................................................................................	27	1	2.00	2	2	0	0	0	0	0
..............................................................................ACTAAATC--TCTGGCTA--CTTGG...........................................................................................	21	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GA....................................................	21	1	2.00	2	1	0	0	1	0	0
...................................................................................................................GATAAGCTCAACTAACTGTTT----GC....................................................	23	1	2.00	2	2	0	0	0	0	0
...........................................................................................................CGTATATTGATAAGCTCAACT..................................................................	21	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................AGCTCAACTAACTGTTT----GC....................................................	19	1	2.00	2	2	0	0	0	0	0
......................................................................................................................AAGCTCAACTAACTGTTT----GCAGC.................................................	23	1	2.00	2	0	0	0	0	2	0
.............................................................................AACTAAATC--TCTGGCTA--CTTGGC---.......................................................................................	23	1	2.00	2	2	0	0	0	0	0
....................................................................................................................ATAAGCTCAACTAACTGTTT----......................................................	20	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................CACCTATTTGGCGCAGAGTGCTC.......................	23	1	2.00	2	0	0	0	0	0	2
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCATT.................................................	24	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GT....................................................	21	1	2.00	2	1	0	1	0	0	0
.................................................................................AAATC--TCTGGCTA--CTTGG...........................................................................................	18	1	2.00	2	2	0	0	0	0	0
.......................................................CATGAAATGTAAGCAGTGTTTGAA...................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................ATATTGATAAGCTCAACTAACTGTTT----......................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................AAGCTCAACTAACTGTTT----GCAC..................................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................ATGTTGGACGGCATGAAGC..	19	1	1.00	1	1	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTAAATC--TC........................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.................................................................AAGCAGTGTTTGAACTAAATC--TCTGG.....................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAGA.................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACT.................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................CTCAAATGTTGGACGGCATGAAGCT.	25	1	1.00	1	1	0	0	0	0	0
........................................................................................TCTGGCTA--CTTGGC---CGTAT..................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................CGTATATTGATAAGCTCAA....................................................................	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................TTGATAAGCTCAACTAACTGTTT----......................................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................CGTATATTGATAAGCTCAACTAACTGTTT----......................................................	29	1	1.00	1	1	0	0	0	0	0
..............................................................................................................ATATTGATAAGCTCAACTAACTGTTT----GC....................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................TATATTGATAAGCTCAACTAACTGTTT----GC....................................................	29	1	1.00	1	1	0	0	0	0	0
...............................................................................................................TATTGATAAGCTCAACTAACTGTTT----......................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................ATAAGCTCAACTAACTGTTT----GCAGTT................................................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCT...................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................TCTGGCTA--CTTGGC---CGTATATTGA.............................................................................	24	1	1.00	1	0	0	0	0	1	0
.......................................................................TGTTTGAACTAAATC--TCTGGC....................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................C---CGTATATTGATAAGCTCAACTAACTGTT...........................................................	29	1	1.00	1	1	0	0	0	0	0
................................................................TAAGCAGTGTTTGAACTAAATC--TCT.......................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAGTC................................................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................CGTATATTGATAAGCTCAACTAACTG.............................................................	26	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................GCAGAGTGCTCAAATGTTGGAC............	22	1	1.00	1	0	0	0	0	0	1
.........................................................................TTTGAACTAAATC--TCTGGCTA--CT..............................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................TCAACTAACTGTTT----GCAGC.................................................	19	1	1.00	1	0	0	0	0	1	0
............................................................................GAACTAAATC--TCTGGCTA--CT..............................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAAAA................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................AGCTCAACTAACTGTTT----GCAGT.................................................	22	1	1.00	1	0	0	0	0	0	1
..GCTCCA-------------AATAC-----------------CGACAATGAGTCC..........................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................ATAC-----------------CGACAATGAGTCCATGAAATC..................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCAAA.................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................................AAGCAGTGTTTGAACTAAATC--TCTGGC....................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................TTGATAAGCTCAACTAACTGT............................................................	21	1	1.00	1	0	0	0	0	0	1
.................................................................................AAATC--TCTGGCTA--CTTGGC---CGT....................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................ACTAAATC--TCTGGCTA--CTTGGC---.......................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................AAGCTCAACTAACTGTTT----GCAGTT................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................CACCTATTTGGCGCAGAGTGCTCA......................	24	1	1.00	1	0	0	0	1	0	0
...............................................................................CTAAATC--TCTGGCTA--CTTGG...........................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................TATTGATAAGCTCAACTAACTGTTT----GC....................................................	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................TGATAAGCTCAACTAACTGT............................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................CTAAATC--TCTGGCTA--CTTGGC---C......................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................TATATTGATAAGCTCAACTAACTGT............................................................	25	1	1.00	1	0	0	0	0	0	1
................................................................TAAGCAGTGTTTGAACTAAATC--..........................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................GAACTAAATC--TCTGGCTA--CTTGGC---.......................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TAAGCTCAACTAACTGTTT----GCC...................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................ATAAGCTCAACTAACTGTTT----GCAGT.................................................	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................CTCAACTAACTGTTT----GCA...................................................	18	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................GCAGAGTGCTCAAATGTTGGACGGCAT.......	27	1	1.00	1	0	0	0	0	0	1
.................................................................AAGCAGTGTTTGAACTAAATC--TCT.......................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................GTTTGAACTAAATC--TCTGGCTA--CTTGGC---.......................................................................................	28	1	1.00	1	1	0	0	0	0	0

droGri2

TGGCTA--------------TGAAGA-----------------TGACAGCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTGGTTA---TCCGACTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCTCGGACAACCGTCGACCGCTGCAAGGGATGAAGCTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................TAAGCTCAATTCACTGTTT----GCAG..................................................	23	1	122.00	122	122	0
.....................................................................................................................TAAGCTCAATTCACTGTTT----GCA...................................................	22	1	43.00	43	41	2
.....................................................................................................................TAAGCTCAATTCACTGTTT----GC....................................................	21	1	21.00	21	20	1
.....................................................................................................................TAAGCTCAATTCACTGTTT----GCAGT.................................................	24	1	15.00	15	11	4
......................................................................................................................AAGCTCAATTCACTGTTT----GCAG..................................................	22	1	6.00	6	6	0
......................................................................................................................AAGCTCAATTCACTGTTT----GCAGT.................................................	23	1	6.00	6	5	1
......................................................................................................................AAGCTCAATTCACTGTTT----GCA...................................................	21	1	4.00	4	4	0
.....................................................................................................................TAAGCTCAATTCACTGTTT----GCAC..................................................	23	1	3.00	3	3	0
.....................................................................................................................TAAGCTCAATTCACTGTTT----G.....................................................	20	1	3.00	3	2	1
...............................................................GTAAGCAGTGTTTGAACTGAATA--TC........................................................................................................	25	1	2.00	2	2	0
.....................................................................................................................TAAGCTCAATTCACTGTTT----GCAT..................................................	23	1	2.00	2	2	0
..........................................................................................................................TCAATTCACTGTTT----GCAG..................................................	18	1	1.00	1	1	0
..................................................................................................................................................................ACAACCGTCGACCGCTGCAAG...........	21	1	1.00	1	1	0
..........................................................................................TGGTTA---TCCGACTTCATATACTGA.............................................................................	24	1	1.00	1	1	0
....................................................................................................................ATAAGCTCAATTCACTGTTT----GCAGT.................................................	25	1	1.00	1	0	1
.....................................................................................................................TAAGCTCAATTCACTGTTT----GCATG.................................................	24	1	1.00	1	1	0
.....................................................................................................................TAAGCTCAATTCACTGTTT----GCAGGCA...............................................	26	1	1.00	1	1	0
........................................................................................................................................................................GTCGACCGCTGCAAGGGATGAA....	22	1	1.00	1	1	0
.....................................................................................................................TAAGCTCAATTCACTGTTT----......................................................	19	1	1.00	1	1	0

droAna3

CGGCTACCGTGGTCCC--GGGGACGA-----------------CGACAACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGCTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................	23	1	266.00	266	155	26	11	7	2	65
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................	22	1	226.00	226	141	6	2	26	8	43
.....................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................	21	1	215.00	215	61	23	1	19	4	107
.....................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................	20	1	143.00	143	7	0	0	26	5	105
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................	24	1	101.00	101	46	34	0	8	8	5
......................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................	21	1	19.00	19	18	0	0	1	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................	23	1	13.00	13	3	3	0	0	0	7
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................	25	1	11.00	11	2	3	0	2	1	3
......................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................	22	1	10.00	10	10	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................	24	1	9.00	9	0	9	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................	20	1	8.00	8	8	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................	24	1	4.00	4	2	0	0	1	1	0
...............................................................GTAAGCAGTGTTTGAACTCGA..............................................................................................................	21	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................	23	1	3.00	3	0	2	0	0	0	1
...............................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................	20	1	3.00	3	0	0	0	0	0	3
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................	23	1	3.00	3	1	2	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTC................................................................................................................	19	1	3.00	3	0	0	1	0	0	2
...............................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	27	1	3.00	3	1	0	0	0	1	1
....................................................................................................................ATAAGCTCAATTAACTGTTT----G.....................................................	21	1	3.00	3	0	0	0	0	0	3
.......................................................................................................................AGCTCAATTAACTGTTT----GCAG..................................................	21	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT...............................................	26	1	2.00	2	0	0	0	0	0	2
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCACT.................................................	24	1	2.00	2	2	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACT.................................................................................................................	18	1	2.00	2	0	0	0	0	0	2
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................	23	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GA....................................................	21	1	2.00	2	0	0	0	1	0	1
........................................................................................TTGG-AAT-----A-G------CTCCCGATAAGCT.......................................................................	22	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................TAAGCTCAATTAACTGTTT----A.....................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................................AGCAGTGTTTGAACTCGATC--TTGG-A....................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TT........................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAA..................................................	22	1	1.00	1	1	0	0	0	0	0
................................................................TAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................	25	1	1.00	1	0	1	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................	22	1	1.00	1	0	0	0	1	0	0
.............................................................................................................................................................................CTCCTCAACGGCCTCCAGCT.	20	1	1.00	1	0	0	1	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA...............................................	25	1	1.00	1	0	1	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----G.....................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................ATGGCATCTTCTCGGAGAAT...........................	20	1	1.00	1	0	0	0	1	0	0
...............................................................................CTCGATC--TTGG-AAT-----A-G------CTCC................................................................................	20	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----......................................................	19	1	1.00	1	0	0	0	1	0	0
...................................................................GCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCA...................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG..................................................	24	1	1.00	1	0	0	0	0	0	1
.GGCTACCGTGGTCCC--GGGGA...........................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................GA-----------------CGACAACGAATCCGTACAGTCC.................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........TGGTCCC--GGGGACGA-----------------CGACAAC................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................CTCAATTAACTGTTT----GCA...................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................GATC--TTGG-AAT-----A-G------CTCCCGATAA..........................................................................	23	1	1.00	1	0	0	0	0	1	0
..............................................................................ACTCGATC--TTGG-AAT-----A-G------CTCCCGATA...........................................................................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----T.....................................................	20	1	1.00	1	0	0	0	0	1	0
..............................................................................ACTCGATC--TTGG-AAT-----A-G------CTCCC...............................................................................	22	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................GAATCGACGTCTCCTCAACGGCCT.......	24	1	1.00	1	1	0	0	0	0	0
.......................................................................TGTTTGAACTCGATC--TTGG-.....................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................TTGG-AAT-----A-G------CTCCCGATAAGC........................................................................	21	1	1.00	1	0	0	0	1	0	0

droBip1

TGGATACCGGGGACCT--GGCGACGA-----------------GGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGTTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGGTTATCATCCA--TCGGGCGAGGA--------------CAATGACAACGAATCAGTGCAGTGTAAGCAGTGCTTGAACTCGATC--TCGT-ATT-AATTGGT------CTTCTGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGACTGCAGCTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGGCTTCCG------T--GGCGAGGA-----------------TGACAACGAATCCGTACAGTGTAAGCAGTGCTTGAACTCGATC--TTGG-ATC---TTGGA------C-CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTGCTCCAGGGACTCCAACTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGGTTTCCG------T--AACGAGGA-----------------CGACAACGAGTCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGAAGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGAATGCAGCTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGGATTCCG------T--GGCGAAGA-----------------TGACAGCGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTAGA------TTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGAATGCAGCTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTGCAGTGTAAGCAGTGTTTGAACTCGATC--TTG-----------GA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGTCGACTGCTCCAGGGACTGCAGCTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGGCTTCCG------C--GGCGAGGA-----------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--CCGG-ATC---CTGAA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTCCTCCAGGGTTTCCAGCTG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGGATTCCG------C--GGCGAGGA-----------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATATTTTCGGAGAATCGAAGACTGCTCCAGGGAATGCAGCTG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCTCGGAGAATCGACGACTGCTTCAGGGATTGCAGCTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................	22	1	2690.00	2690	0	0	0	0	3	1	0	0	0	0	0	1	0	1	0	0	0	0	2	0	0	0	1	1	3	0	0	0	0	1	2	31	59	1	1	0	0	1	0	3	0	0	0	2	1	2	0	0	1	3	1	9	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	10	10	8	0	0	0	0	0	0	9	3	1	0	6	13	0	2	15	5	17	0	0	5	2	66	0	12	1	11	4	1	5	0	1	0	0	2	0	2	34	33	1	28	0	11	3	20	0	24	2	28	30	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	22	0	0	0	1	0	0	0	0	1	3	0	0	0	0	0	141	141	0	124	0	0	19	65	3	33	1	71	0	119	5	0	0	0	0	0	53	3	5	2	0	0	0	0	6	0	3	0	0	0	0	0	0	2	4	0	0	0	0	0	0	3	9	3	5	25	3	1	13	28	18	67	9	22	10	59	94	0	0	63	1	0	0	0	0	2	0	8	7	12	13	7	1	11	22	0	6	18	23	10	14	30	12	14	7	9	5	1	12	2	5	46	10	15	73	24	20	5	4	10	0	0	1	4	0	5	9	25	4	2	0	14	8	14	12	0	0	2	4	2	0	2	1	0	1	3	6	1	2	1	3	0	2	2	40	3	4	1	0	0	1	10	0	0	0	1	8	6	0	2	1	0	7	16	55	23	86	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................	23	1	2396.00	2396	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	6	1	0	0	0	0	0	0	0	1	0	2	3	87	71	1	0	0	1	1	2	4	0	0	1	1	1	2	2	1	1	1	0	0	2	0	0	0	0	7	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	15	13	17	0	0	0	4	4	0	4	1	1	1	3	0	0	1	2	1	1	0	2	2	3	12	0	9	2	5	1	0	1	1	1	1	0	0	6	0	2	3	0	0	0	0	0	12	0	5	0	5	3	0	0	0	0	0	0	3	1	3	0	1	2	0	0	0	1	1	1	0	0	19	0	0	0	0	0	1	3	0	0	2	0	0	0	0	0	31	25	0	19	0	0	18	84	3	99	2	6	1	8	1	0	0	0	1	0	48	1	1	4	2	0	0	0	1	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	4	2	2	110	113	119	261	133	79	68	204	43	0	0	28	0	0	0	0	2	3	0	1	4	11	6	18	4	7	14	12	9	11	5	7	6	19	6	5	1	2	4	4	5	0	1	8	2	6	25	9	1	1	1	3	0	1	0	2	0	5	1	18	5	1	2	9	7	8	17	1	1	1	0	6	1	0	7	0	1	1	0	1	2	27	24	1	3	3	11	0	6	2	0	0	1	2	0	0	0	2	12	2	0	1	2	0	1	8	13	9	8	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................	21	1	1510.00	1510	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	2	0	0	1	0	1	1	44	45	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	3	0	1	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	2	2	2	0	0	0	0	0	0	1	0	0	0	0	0	0	3	2	2	0	0	0	0	21	1	0	0	2	0	0	1	0	0	0	0	0	0	1	19	17	0	9	0	16	4	5	0	6	5	22	17	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	2	0	0	0	0	8	0	0	0	0	0	0	0	0	1	2	0	0	1	0	0	76	106	0	45	0	1	43	48	1	48	1	88	0	104	7	0	0	0	2	0	89	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	5	17	15	28	9	19	3	46	19	0	0	27	0	0	0	0	0	0	0	0	6	10	1	7	0	8	30	6	8	3	6	1	1	6	5	12	1	2	3	1	4	0	0	15	0	10	20	11	1	0	0	4	0	2	0	1	1	2	0	5	3	0	0	11	3	17	20	1	0	1	0	0	1	0	2	0	0	5	1	1	3	1	3	0	0	0	16	0	1	0	0	0	1	3	0	0	0	0	16	0	1	0	1	0	0	5	24	11	15	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................	24	1	844.00	844	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	2	2	0	0	0	2	1	1	0	4	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	8	5	5	0	0	0	0	2	0	1	0	1	0	2	0	0	3	2	1	4	0	0	1	1	14	0	3	6	9	0	1	0	0	6	0	0	0	0	0	7	2	0	2	0	1	0	1	0	4	1	2	1	0	0	0	0	0	0	1	0	3	0	0	2	7	0	0	0	5	9	5	0	41	0	0	5	2	0	0	0	0	0	2	0	0	0	0	0	17	15	0	15	0	0	1	6	0	10	0	2	0	0	0	0	0	0	0	0	2	3	0	4	0	0	0	0	0	0	3	0	0	0	0	0	0	3	1	0	0	0	0	0	0	4	5	0	6	58	7	4	13	10	22	50	10	6	10	40	1	0	0	2	0	0	0	0	2	3	0	0	0	3	4	4	0	0	0	0	0	6	5	7	3	12	0	11	9	5	4	6	6	0	1	7	2	8	13	4	4	0	0	2	0	0	0	0	0	0	2	19	16	4	0	0	0	1	0	2	4	4	1	3	0	0	3	1	2	2	6	2	4	1	1	0	9	2	3	2	10	6	0	0	2	6	1	0	0	2	2	1	1	3	1	0	2	2	12	15	17	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................	20	1	464.00	464	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	2	0	0	0	4	0	6	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	21	0	4	0	0	5	12	0	8	0	8	0	4	0	0	1	0	2	0	11	8	0	2	0	0	0	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	1	0	0	1	0	2	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	1	6	1	1	1	0	3	31	1	1	3	1	1	0	0	1	5	0	1	1	0	2	1	0	10	0	3	11	4	2	2	3	7	0	0	0	1	0	1	3	7	2	1	0	23	9	18	30	0	0	1	0	0	2	0	0	0	0	4	0	1	1	0	0	0	0	2	11	0	0	0	1	0	1	1	0	2	0	4	32	3	0	1	0	1	1	3	16	8	6	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................	23	1	229.00	229	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	2	3	0	1	2	0	0	0	0	0	1	1	1	2	0	0	0	0	1	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	2	1	0	1	4	4	2	1	2	3	1	1	0	1	9	2	0	7	0	0	0	0	0	1	0	1	0	1	1	3	0	0	0	0	0	1	0	1	2	4	0	2	2	2	2	4	2	0	0	0	0	6	6	4	1	0	0	0	0	0	1	0	0	1	7	1	3	1	0	0	2	0	3	0	2	1	1	2	1	3	5	2	5	1	1	1	0	1	2	0	2	3	2	3	5	1	2	0	0	10	1	1	0	2	6	0	0	1	0	1	0	4	2	8	4	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................	24	1	204.00	204	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	9	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	2	0	0	1	1	0	1	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	0	6	0	0	0	6	0	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	3	9	2	16	8	5	2	7	2	0	0	2	0	0	0	0	0	1	0	2	0	0	0	1	0	2	0	0	0	2	0	1	0	2	0	1	0	1	1	1	0	1	0	2	0	0	2	0	1	0	2	1	0	0	0	2	0	1	1	2	0	2	0	2	1	3	4	0	0	1	3	0	0	0	1	0	1	1	0	0	1	0	3	0	0	0	6	1	4	1	0	0	1	3	0	0	0	1	1	0	0	0	0	0	0	3	5	4	4	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................	25	1	79.00	79	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0	2	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	2	2	0	1	0	1	0	1	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	2	0	0	1	3	3	0	0	2	1	0	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	2	1	1	10	5	7	0
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.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTA...............................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
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......................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA...............................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GATAAGCTCAATTAACTGTTT----GCAGT.................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTCAA....................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTA................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................GAATCGACGACTGCTTCAGGGAT........	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CTTCTCGGAGAATCGACGA.....................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTG----C.....................................................	20	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CTCAATTAACTGTTT----GCAG..................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TTAT-C....................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	27	1	348.00	348	3	279	15	50	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................	21	1	183.00	183	137	11	1	3	1	25	1	1	2	1	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTC................................................................................................................	19	1	99.00	99	7	77	11	3	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................AAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	25	1	69.00	69	1	60	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTCA.....................................................................	23	1	65.00	65	0	63	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................	22	1	56.00	56	6	0	1	7	4	11	5	2	12	6	0	2	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTC......................................................................	22	1	50.00	50	1	37	11	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................	23	1	48.00	48	12	1	2	13	1	6	1	0	1	0	0	10	0	1	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCT.......................................................................	21	1	36.00	36	0	30	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................	23	1	35.00	35	6	7	19	1	1	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTCA.....................................................................	21	1	33.00	33	0	28	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACT.................................................................................................................	18	1	26.00	26	0	18	2	1	0	0	0	0	0	0	0	5	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTT...........................................................	18	1	23.00	23	5	0	0	0	3	14	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................	24	1	23.00	23	0	0	0	0	0	0	5	6	6	6	0	0	0	0	0	0	0
.......................................................................TGTTTGAACTCGATC--TTGG-.....................................................................................................	19	1	21.00	21	0	18	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCT.......................................................................	19	1	20.00	20	0	19	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCA.....................................................................	22	1	19.00	19	0	12	4	2	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................GCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	23	1	18.00	18	0	14	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTC......................................................................	20	1	18.00	18	0	16	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGCG................................................	25	1	17.00	17	0	0	0	0	5	12	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-T....................................................................................................	28	1	16.00	16	0	7	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................	26	1	16.00	16	0	3	2	11	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................	24	1	15.00	15	3	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----......................................................	19	1	14.00	14	1	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTCAATTAACT..............................................................	28	1	13.00	13	0	12	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GTGTTTGAACTCGATC--TTGG-.....................................................................................................	20	1	13.00	13	0	10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTCAATTAAC...............................................................	27	1	13.00	13	0	10	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................	20	1	12.00	12	8	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCT.......................................................................	26	1	11.00	11	0	9	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGC........................................................................	20	1	10.00	10	0	4	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTC......................................................................	21	1	10.00	10	1	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AGTGTTTGAACTCGATC--TTGG-.....................................................................................................	21	1	9.00	9	0	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGC........................................................................	18	1	8.00	8	0	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTCAATTAAC...............................................................	29	1	8.00	8	0	5	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ACTCGATC--TTGG-TTC---TTGGA------CT..................................................................................	22	1	7.00	7	1	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0
................................................................TAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	26	1	7.00	7	0	2	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTGGA------CTCTTGATAAGCTC......................................................................	19	1	7.00	7	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................	24	1	7.00	7	0	1	0	5	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCT.......................................................................	20	1	7.00	7	0	5	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTCAA....................................................................	22	1	7.00	7	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GTGTTTGAACTCGATC--TTGG-T....................................................................................................	21	1	6.00	6	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................G-TTC---TTGGA------CTCTTGATAAGCTC......................................................................	23	1	6.00	6	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GATC--TTGG-TTC---TTGGA------CTCTTG..............................................................................	22	1	6.00	6	0	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................	23	1	5.00	5	1	0	0	1	0	0	0	0	1	2	0	0	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTCAA....................................................................	24	1	5.00	5	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCAATTAAC...............................................................	28	1	5.00	5	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTGGA------CTCTTGATAAGCT.......................................................................	18	1	5.00	5	0	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................G-TTC---TTGGA------CTCTTGATAAGCT.......................................................................	22	1	5.00	5	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCC.......................................................................	21	1	4.00	4	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	24	1	4.00	4	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGC........................................................................	19	1	4.00	4	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCAATTAACT..............................................................	29	1	4.00	4	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................CAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................	22	1	3.00	3	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CTCGATC--TTGG-TTC---TTGGA------CTCTTGAT............................................................................	27	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................	20	1	3.00	3	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0
.....................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCTCA.....................................................................	28	1	3.00	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TT........................................................................................................	25	1	3.00	3	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................CTCGGAGAATCGACGACT...................	18	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TTGG-TTC---TTGGA------CTCTTGA.............................................................................	19	1	3.00	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TTCTCGGAGAATCGACGAC....................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTCAAT...................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CGGACGGCATCTTCTCGGA...............................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-G....................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACC.................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CGGACGGCATCTTCTCGGAG..............................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA................................................	25	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
........................................................................GTTTGAACTCGATC--TTGG-.....................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATCGACGACTGCTCCAGG...........	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................A-----------------TGACAACGAATCTGTACAGT...................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GATC--TTGG-TTC---TTGGA------CTCTTGA.............................................................................	23	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TTGG-TTC---TTGGA------CTCTTGATAAGCT.......................................................................	25	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CGGAGAATCGACGACTGCTC...............	20	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ACTCGATC--TTGG-TTC---TTGGA------C...................................................................................	21	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................G-TTC---TTGGA------CTCTTGATAAGCTCA.....................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GTTTGAACTCGATC--TTGG-T....................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AAGCAGTGTTTGAACTCGATC--TTGG-T....................................................................................................	26	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CTTCTCGGAGAATCGACGA.....................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA.................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.......................................................................TGTTTGAACTCGATC--TTGG-T....................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCC.......................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ACTCGATC--TTGG-TTC---TTGGA------CTCTTGATA...........................................................................	29	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCGATC--TTGG-TTC---TTGGA------CTCT................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AGTGTTTGAACTCGATC--TTGG-T....................................................................................................	22	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................TCGATC--TTGG-TTC---TTGGA------CTCTTGAT............................................................................	26	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CG------T--GGCGAGGA-----------------TGACAACGAATCTGTA.......................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................ACTCGATC--TTGG-TTC---TTGGA------CTCT................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCG...................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAG.........................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................GATC--TTGG-TTC---TTGGA------CT..................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GCAGTGTTTGAACTCGATC--TTG.......................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAG.........................................................................	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................G-TTC---TTGGA------CTCTTGATAAGCC.......................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GTGTTTGAACTCGATC--TTGG-TT...................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA...............................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GA....................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GAACTCGATC--TTGG-TTC---TTGGA------CTC.................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCT...................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TAAGCAGTGTTTGAACTCGA..............................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TAAGCAGTGTTTGAACTCGATC--TT........................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCAA....................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TTGG-TTC---TTGGA------CTCTTGG.............................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................CTCTTGATAAGCTCAATTAACTGTT...........................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--C.........................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TGTAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TC--TTGG-TTC---TTGGA------CTCTTG..............................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................C--TTGG-TTC---TTGGA------CTCTTGG.............................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCACT.................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................ATCTTCTCGGAGAATCGACGACT...................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CTTCTCGGAGAATCGACGACTGC.................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--G.........................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GATAAGCTCAATTAACTGTTT----GCAG..................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AGTGTTTGAACTCGATC--TTGG-G....................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TTCTCGGAGAATCGACGACTGC.................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGC........................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AGTGTTTGAACTCGATC--TTGG-TT...................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GA------CTCTTGATAAGCTCAATTAACT..............................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GCTCAATTAACTGTTT----GC....................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTCAAT...................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCGATC--TTGG-TTC---TTGGA------C...................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTGGA------CTCTTGATAAGCTCAATTAAC...............................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CGATC--TTGG-TTC---TTGGA------CTCTTGAT............................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................CAATTAACTGTTT----GCAGT.................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CTTCTCGGAGAATCGACGG.....................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AACTCGATC--TTGG-TTC---TTGGA------C...................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CTCAATTAACTGTTT----GCAG..................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCG.....................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGAGGA-----------------TGACAACGAATCT..........................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TAAGCAGTGTTTGAACTCGATC--..........................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CGATC--TTGG-TTC---TTGGA------CTC.................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTGGA------CTCTTGATAAGCTCAA....................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ACTCGATC--TTGG-TTC---TTG............................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GACGGCATCTTCTCGGAGAATC..........................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CGATC--TTGG-TTC---TTGGA------CTCTTGATAAG.........................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTCT.....................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GTTTGAACTCGATC--TTGG-TT...................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AAGCAGTGTTTGAACTCGATC--..........................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCC.......................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TCTTGATAAGCTCAATTAACTGTTT----......................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................GGA------CTCTTGATAAGCTCA.....................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCG.......................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................A-----------------TGACAACGAATCTGTACAGTC..................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ACTCGATC--TTGG-TTC---TTGGA------CTCTTGAT............................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................G-TTC---TTGGA------CTCTTGATAAGC........................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................ATC--TTGG-TTC---TTGGA------CTC.................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTCC.....................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCC.......................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TC--TTGG-TTC---TTGGA------CTCTTGATAAGCT.......................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTCAATT..................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTCG.....................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCG.......................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TTGATAAGCTCAATTAACTGTTT----......................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TTTGAACTCGATC--TTGG-TTC---TTGGA------CT..................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGACAACGAATCTGTACAGT...................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GTGTTTGAACTCGATC--TTG.......................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----G.....................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TTCTCGGAGAATCGACGACTGCTCC..............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................A------CTCTTGATAAGCTCAATTAACTGT............................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTGGA------CTCTTGATAAGCTCA.....................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCG.......................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AAGCAGTGTTTGAACTCGATC--TT........................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAA...................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................TTGGA------CTCTTGATAAGCC.......................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................	22	1	164.00	164	89	5	8	62
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................	23	1	147.00	147	106	4	16	21
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................	24	1	91.00	91	65	1	21	4
.....................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................	20	1	79.00	79	8	6	1	64
.....................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................	21	1	71.00	71	28	1	0	42
...............................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	27	1	61.00	61	50	5	6	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................	24	1	37.00	37	15	3	11	8
...............................................................GTAAGCAGTGTTTGAACT.................................................................................................................	18	1	23.00	23	0	0	18	5
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................	23	1	13.00	13	11	0	2	0
...............................................................GTAAGCAGTGTTTGAACTC................................................................................................................	19	1	9.00	9	0	2	6	1
......................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................	22	1	9.00	9	9	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................	25	1	8.00	8	2	1	0	5
...............................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................	23	1	7.00	7	1	0	6	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................	26	1	7.00	7	5	1	1	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTCA.....................................................................	23	1	7.00	7	2	2	2	1
...............................................................................................C---TTGGA------CTCTTGATAAGCTCA.....................................................................	21	1	6.00	6	0	2	4	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-T....................................................................................................	28	1	5.00	5	2	3	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................	23	1	5.00	5	5	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................	21	1	5.00	5	5	0	0	0
.......................................................................TGTTTGAACTCGATC--TTGG-.....................................................................................................	19	1	4.00	4	3	0	1	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTA...............................................	26	1	3.00	3	0	1	2	0
.....................................................................AGTGTTTGAACTCGATC--TTGG-.....................................................................................................	21	1	3.00	3	3	0	0	0
................................................................TAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	26	1	3.00	3	3	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................	20	1	3.00	3	0	2	1	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGT.................................................	22	1	3.00	3	2	0	0	1
...............................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................	24	1	3.00	3	0	1	0	2
...............................................................GTAAGCAGTGTTTGAACTCGATC--TT........................................................................................................	25	1	2.00	2	2	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................	20	1	2.00	2	2	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTC......................................................................	22	1	2.00	2	0	1	1	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----......................................................	19	1	2.00	2	0	0	1	1
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................	25	1	2.00	2	0	0	0	2
...................................................................GCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	23	1	2.00	2	0	0	2	0
..................GGCGAGGA-----------------TGACAACGAAT............................................................................................................................................	19	1	2.00	2	0	0	2	0
.....................................................................................................................TAAGCTCAATTAACTGTT...........................................................	18	1	1.00	1	1	0	0	0
.............................................................................................TTC---TTGGA------CTCTTGATAAGC........................................................................	20	1	1.00	1	0	0	1	0
.........................................................................................................................CTCAATTAACTGTTT----GCAGT.................................................	20	1	1.00	1	1	0	0	0
................................................................TAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................	25	1	1.00	1	1	0	0	0
........................................................................................TTGG-TTC---TTGGA------CTCTTGA.............................................................................	19	1	1.00	1	1	0	0	0
.................................................................AAGCAGTGTTTGAACTCGATC--TTGG-T....................................................................................................	26	1	1.00	1	0	1	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCACT.................................................	24	1	1.00	1	1	0	0	0
...ATTCCG------T--GGCGAGGA-----------------TGACAACGAA.............................................................................................................................................	25	1	1.00	1	1	0	0	0
.................................................................................................................TTGATAAGCTCAATTAACTGTTT----......................................................	23	1	1.00	1	1	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----C.....................................................	20	1	1.00	1	1	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA................................................	25	1	1.00	1	0	1	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCT.......................................................................	20	1	1.00	1	0	1	0	0
.................................................................................................................TTGATAAGCTCAATTAACT..............................................................	19	1	1.00	1	0	0	1	0
................................................................TAAGCAGTGTTTGAACTCGATC--T.........................................................................................................	23	1	1.00	1	0	0	1	0
...............................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................	22	1	1.00	1	0	0	1	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................	23	1	1.00	1	0	0	0	1
.............................................................................................TTC---TTGGA------CTCTTGATAAGCTCAA....................................................................	24	1	1.00	1	0	1	0	0
...................................................................................................TTGGA------CTCTTGATAAGCTCA.....................................................................	20	1	1.00	1	0	0	1	0
.......................................................................................................................AGCTCAATTAACTGTTT----G.....................................................	18	1	1.00	1	0	0	0	1
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCA.....................................................................	22	1	1.00	1	1	0	0	0
.....................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCT.......................................................................	26	1	1.00	1	1	0	0	0
.......................................................................................................................................................................CGACGACTGCTCCAGGGATTGC.....	22	1	1.00	1	0	0	1	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT...............................................	26	1	1.00	1	1	0	0	0
........................................................................................TTGG-TTC---TTGGA------CTCTTG..............................................................................	18	1	1.00	1	1	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTC......................................................................	20	1	1.00	1	0	1	0	0
..........................................................................................................................TCAATTAACTGTTT----GCAG..................................................	18	1	1.00	1	1	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAG..................................................	21	1	1.00	1	1	0	0	0
......CCG------T--GGCGAGGA-----------------TGACAACGA..............................................................................................................................................	21	1	1.00	1	0	1	0	0
.......................................................................................................A------CTCTTGATAAGCTCAATTAACTGTT...........................................................	26	1	1.00	1	0	0	1	0
.....................................................................................................................................................................ATCGACGACTGCTCCAGGGATTGC.....	24	1	1.00	1	0	0	1	0
...............................................................GTAAGCAGTGTTTGAACTCGA..............................................................................................................	21	1	1.00	1	1	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCACA.................................................	24	1	1.00	1	0	0	0	1
.................................................................AAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................	25	1	1.00	1	0	0	1	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----GCATTT................................................	26	1	1.00	1	1	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGT............................................................	18	1	1.00	1	0	0	1	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT.................................................	25	1	1.00	1	0	1	0	0
...ATTCCG------T--GGCGAGGA-----------------TGACAA.................................................................................................................................................	21	1	1.00	1	0	0	1	0
........G------T--GGCGAGGA-----------------TGACAACGAA.............................................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

CGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TAGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................	24	1	427.00	427	0	183	226	2	3	10	3	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................	23	1	306.00	306	5	240	44	9	1	5	2	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................	22	1	164.00	164	8	116	4	5	11	18	2	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................	21	1	112.00	112	44	42	10	0	7	8	1	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................	24	1	85.00	85	0	1	84	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................	23	1	48.00	48	14	5	27	1	0	0	1	0	0	0	0
........................................................................................TAGG-ATC---TTGGA------CTCTTGA.............................................................................	19	1	33.00	33	19	2	8	0	2	1	0	0	0	1	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................	22	1	27.00	27	0	27	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TAGG-A....................................................................................................	28	1	22.00	22	0	6	0	0	0	0	2	0	0	0	14
.....................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................	20	1	22.00	22	1	6	0	0	6	9	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................	23	1	20.00	20	0	19	1	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................	24	1	17.00	17	0	12	1	0	1	3	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................	21	1	16.00	16	0	16	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TAG.......................................................................................................	26	1	15.00	15	0	10	0	0	0	0	5	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TAGG-AT...................................................................................................	29	1	15.00	15	0	0	0	0	0	0	0	0	0	0	15
...............................................................GTAAGCAGTGTTTGAACTCGATC--TAGG-.....................................................................................................	27	1	14.00	14	1	11	1	0	0	0	1	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................	25	1	13.00	13	1	7	3	1	1	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................	24	1	8.00	8	3	3	1	0	0	0	1	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCA.....................................................................	22	1	8.00	8	0	4	0	0	0	0	4	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTC......................................................................	21	1	7.00	7	1	3	1	0	0	0	2	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TA........................................................................................................	25	1	7.00	7	0	5	0	0	0	0	2	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................	22	1	6.00	6	0	5	1	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTCA.....................................................................	21	1	5.00	5	0	3	0	0	0	0	2	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAG..................................................	21	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................	23	1	4.00	4	0	2	2	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................	20	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
........................................................................................................................GCTCAATTAACTGTTT----GCAG..................................................	20	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTC................................................................................................................	19	1	4.00	4	0	2	0	1	0	0	1	0	0	0	0
...........................................................................................G-ATC---TTGGA------CTCTTGATAAGCT.......................................................................	22	1	4.00	4	1	0	2	0	0	0	1	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTT...........................................................	18	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGC........................................................................	19	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCT.......................................................................	20	1	3.00	3	1	1	0	0	0	0	1	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGA..............................................................................................................	21	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
.....................................................................AGTGTTTGAACTCGATC--TAGG-A....................................................................................................	22	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
..........................................................................................................................TCAATTAACTGTTT----GCAGT.................................................	19	1	3.00	3	0	2	0	1	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACT.................................................................................................................	18	1	3.00	3	0	1	0	1	0	0	1	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCAATTAACT..............................................................	29	1	3.00	3	1	1	1	0	0	0	0	0	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG..................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.............................................................................................ATC---TTGGA------CTCTTGATAAGCTCA.....................................................................	23	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
.........................................................................................................................CTCAATTAACTGTTT----GCAGT.................................................	20	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCATT.................................................	24	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0
.............................................................................................ATC---TTGGA------CTCTTGATAAGCTC......................................................................	22	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAT..................................................	23	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0
...............................................................................................................TCTTGATAAGCTCAATTAACTGTTT----GC....................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
........................................................................................TAGG-ATC---TTGGA------CTCTTGG.............................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
...............................................................................CTCGATC--TAGG-ATC---TTGGA------CTCTTGA.............................................................................	26	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCAA....................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................G-ATC---TTGGA------CTCTTGATAAGCTCA.....................................................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTCAAT...................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AATCGACGACTGCTCCAGGGATTGC.....	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----G.....................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTGCTCCAGGGATTGCAGCTG	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GC....................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................CTCGATC--TAGG-ATC---TTGGA------CTCT................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----......................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGT.................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................AAGCAGTGTTTGAACTCGATC--TAGG-.....................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.GGATTCCG------T--GGCGAGGA-----------------TGACAACG...............................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................ACTCGATC--TAGG-ATC---TTGGA------CTCTTG..............................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TCGACGACTGCTCCAGGGA.........	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................CTCGATC--TAGG-ATC---TTGGA------CTCTTG..............................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................GAATCGACGACTGCTCCAGGGAT........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................CGGACGGCATCTTCTCGGA...............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................CTCTTGATAAGCTCAATTAAC...............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----......................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................C--TAGG-ATC---TTGGA------CTCTTGATAAGCTCA.....................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCAG....................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCC...................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGTT................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................TAAGCAGTGTTTGAACTCGA..............................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATCGACGACTGCTCCAGGGATT.......	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGTT...........................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----T.....................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................TGCTCCAGGGATTGCAGCTG	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATCGACGACTGCTCCAGGGA.........	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................GGCGAGGA-----------------TGACAACGAAT............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................CTTCTCGGAGAATCGACGACC...................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................GCTCAATTAACTGTTT----GCAGT.................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................TAAGCAGTGTTTGAACTCG...............................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCACT.................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................CGGCATCTTCTCGGAGAATC..........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................CTCTTGATAAGCTCAATTAACTGTTT----GC....................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................TAGG-ATC---TTGGA------CTCTTGC.............................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----GC....................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................GA------CTCTTGATAAGCTCAATTAACTGTTT----......................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CGACGACTGCTCCAGGGATTGCAGCT.	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................ATC---TTGGA------CTCTTGATAAGCTCAAT...................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TCTTGATAAGCTCAATTAACTGTT...........................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................CAGTGTTTGAACTCGATC--TAGG-A....................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATCGACGACTGCTCCAGGGATTGCAGC..	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................CAATTAACTGTTT----GCAGT.................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TCGACGACTGCTCCAGGGATTG......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TCTTGATAAGCTCAATTAACTGTTT----......................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCACA.................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GACGACTGCTCCAGGGATTGCAGCTG	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCT.......................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAAC...............................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................C--TAGG-ATC---TTGGA------CTCTTGATAAGC........................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....TCCG------T--GGCGAGGA-----------------TGACAA.................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................AAGCAGTGTTTGAACTCGATC--TAGG-AT...................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................AGTGTTTGAACTCGATC--TA........................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................TAGG-ATC---TTGGA------CTCTTGATAAGCT.......................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................................................................................TC--TAGG-ATC---TTGGA------CTCT................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCACT.................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGTT................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................AGCAGTGTTTGAACTCGATC--TA........................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTC................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CTCGGAGAATCGACGACTGCTC...............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................C--TAGG-ATC---TTGGA------CTCTTGATAAGCT.......................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................GAACTCGATC--TAGG-ATC---TTGGA------CTCTTGG.............................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGAC.............................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................GAACTCGATC--TAGG-ATC---TTGGA------....................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TTCTCGGAGAATCGACGACTGCTCC..............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCACTT................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGG.................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................AAGCAGTGTTTGAACTCGA..............................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GACGGCATCTTCTCGGAGAATCGACGA.....................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................GACGACTGCTCCAGGGATT.......	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................TCAATTAACTGTTT----GCAGTT................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................CAATTAACTGTTT----GCAGTT................................................	19	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.GGATTCCG------T--GGCGAGGA-----------------CCT....................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	1	0	0	0	0	0

droEre2

TGGATTCCG------T--GGCGAGGA-----------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TGGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGTTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................	22	1	488.00	488	205	1	55	0	17	210	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................	23	1	434.00	434	293	7	6	6	5	117	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................	21	1	290.00	290	67	3	16	2	8	194	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................	20	1	153.00	153	11	1	13	0	5	123	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................	24	1	105.00	105	82	13	4	0	3	3	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................	24	1	28.00	28	6	1	4	0	2	15	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................	22	1	20.00	20	20	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TGGG-.....................................................................................................	27	1	17.00	17	8	0	1	0	8	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................	23	1	16.00	16	4	3	2	0	1	6	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................	21	1	15.00	15	15	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................	25	1	14.00	14	3	1	0	0	3	7	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TGG.......................................................................................................	26	1	14.00	14	8	0	0	0	4	2	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TGGG-A....................................................................................................	28	1	7.00	7	2	0	0	0	5	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TG........................................................................................................	25	1	7.00	7	3	0	0	0	3	1	0
...............................................................GTAAGCAGTGTTTGAACTC................................................................................................................	19	1	6.00	6	0	0	0	0	5	1	0
...............................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................	20	1	6.00	6	0	0	0	0	3	3	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................	24	1	5.00	5	2	3	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................	23	1	5.00	5	1	0	0	0	0	4	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................	23	1	5.00	5	5	0	0	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACT.................................................................................................................	18	1	4.00	4	0	0	0	0	0	4	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAT..................................................	23	1	4.00	4	2	0	0	0	0	2	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................	23	1	4.00	4	3	0	0	0	0	1	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCA...................................................	20	1	3.00	3	3	0	0	0	0	0	0
................................................................TAAGCAGTGTTTGAACTCGATC--..........................................................................................................	22	1	3.00	3	0	0	1	0	0	2	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................	24	1	3.00	3	2	0	0	0	1	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................	25	1	3.00	3	0	0	0	0	0	3	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTCA.....................................................................	21	1	2.00	2	0	0	0	0	2	0	0
.......................................................................................................................AGCTCAATTAACTGTTT----GCAGT.................................................	22	1	2.00	2	1	0	1	0	0	0	0
...................................................................................................................GATAAGCTCAATTAACTGTTT----GCAGT.................................................	26	1	2.00	2	0	0	0	0	1	1	0
......................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................	20	1	2.00	2	1	0	0	0	0	1	0
.....................................................................................................................TAAGCTCAATTAACTGTT...........................................................	18	1	2.00	2	0	0	0	0	0	2	0
...............................................................GTAAGCAGTGTTTGAACTCGA..............................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA...............................................	26	1	2.00	2	0	0	0	0	0	2	0
.....................................................................AGTGTTTGAACTCGATC--TGGG-.....................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----......................................................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCT.......................................................................	20	1	1.00	1	0	0	0	0	1	0	0
........G------T--GGCGAGGA-----------------TGACAACGA..............................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................TC---TTGGA------CTCTTGATAAGCTCA.....................................................................	22	1	1.00	1	0	0	0	1	0	0	0
..GATTCCG------T--GGCGAGGA-----------------TGACAACGAAT............................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGATC--TGGG-G....................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----G.....................................................	19	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................GACGACTGCTCCAGGGATT.......	19	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................C---TTGGA------CTCTTGATAAGCT.......................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCG...................................................	22	1	1.00	1	0	0	0	0	0	1	0
....................................................................CAGTGTTTGAACTCGATC--TGGG-.....................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----GCA...................................................	23	1	1.00	1	0	0	1	0	0	0	0
...............................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----GC....................................................	22	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................CGACGACTGCTCCAGGGA.........	18	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................TGGA------CTCTTGATAAGCTCAA....................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.................................................................................CGATC--TGGG-ATC---TTGGA------CTCTTGATA...........................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCACTT................................................	25	1	1.00	1	0	0	0	0	0	1	0
...................................................................................ATC--TGGG-ATC---TTGGA------CTCTTGA.............................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................GGACGGCATCTTCTCGGAGAATCGA........................	25	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................CAATTAACTGTTT----GCAGT.................................................	18	1	1.00	1	1	0	0	0	0	0	0
.......................GGA-----------------TGACAACGAATCTGTTCAGT...................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG..................................................	24	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCATT.................................................	24	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................CTCAATTAACTGTTT----GCAG..................................................	19	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TTGGA------CTCTTGATAAGCTC......................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...ATTCCG------T--GGCGAGGA-----------------TGACAACG...............................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................ATC---TTGGA------CTCTTGATAAGCTCA.....................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA................................................	25	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................AAGCTCAATTAACTGTTT----GCAGA.................................................	23	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................TTGGA------CTCTTGATAAGCTCA.....................................................................	20	1	1.00	1	0	0	0	0	0	1	0
................................................................TAAGCAGTGTTTGAACTCGATC--TGG.......................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................GGAGAATCGACGACTGCTCCAGGGAT........	26	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................ATC---TTGGA------CTCTTGATAAGCTC......................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.................................................................AAGCAGTGTTTGAACTCGAT.............................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................C---TTGGA------CTCTTGATAAGCTC......................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..................GGCGAGGA-----------------TGACAACGAATCTGTTCAGT...................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA.................................................	24	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTG----......................................................	19	2	0.50	1	0	0	0	0	0	1	0
.....................................................................................................................TAAGCTCAATTAACTGTTT----CA....................................................	21	2	0.50	1	1	0	0	0	0	0	0
.....................................................................................................................TAAGCTCAATTAACTGTTC----A.....................................................	20	4	0.25	1	1	0	0	0	0	0	0

dps_2595

XL_group1a:9060622-9060690 +

Known Ortholog

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads