ID:

dps_2588

 Coordinate:

XL_group1a:8845320-8845391 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.5 -10.3 -10.3 -10.3

Flybase annnotation

exon [dpse_GLEANR_11623:2]; CDS [Dpse\GA23103-cds]; CDS [Dpse\GA23103-cds]; exon [dpse_GLEANR_11623:1]; intron [Dpse\GA23103-in]

No Repeatable elements found

mature
  1. dps_2587  XL_group1a:8839465-8839490 +
  2. dps_2588  XL_group1a:8845343-8845368 +
star

Sense Strand Reads

##################################################------------------------------------------------------------------------##################################################
CCTGCCTCACCTCCCTCAGCACGGGGGGCATCATCGCCAAGACGATTTACGTGAGTGCCGCAAGCCCTTGCATTGATCTTTGCCATGTTTTCATTGGGCCCGTATTGGTTGTATTATTGCAGGAGCTGATCTACCACAGCGTCGCTGCCATACTGATCCTGGCCGCATCTAT
**************************************************................((.((..(((.....((((....................))))....)))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 SRR902010
ovaries
 M062
head
......................................................................................................TATTGGTTGTATTATTGCAGGAGC.............................................. 24 0 2 21.00 42 35 7 0 0 0
.........................................................................................................TGGTTGTATTATTGCAGGAGCTGATC......................................... 26 0 2 19.00 38 21 14 3 0 0
.........................................................................................................TGGTTGTATTATTGCAGGAGCTGA........................................... 24 0 2 7.00 14 11 2 1 0 0
............................................................................................................TTGTATTATTGCAGGAGCTGATCTAC...................................... 26 0 2 6.00 12 6 6 0 0 0
............................................................................................................TTGTATTATTGCAGGAGCTGATCTACC..................................... 27 0 2 6.00 12 3 5 2 1 1
........................................................................................................TTGGTTGTATTATTGCAGGAGCTGATC......................................... 27 0 2 5.50 11 11 0 0 0 0
........................................................................................................TTGGTTGTATTATTGCAGGAGCTGA........................................... 25 0 2 5.50 11 11 0 0 0 0
......................................................................................................TATTGGTTGTATTATTGCAGGAGCTG............................................ 26 0 2 3.50 7 6 1 0 0 0
......................................................................................................TATTGGTTGTATTATTGCAGGAG............................................... 23 0 2 3.00 6 6 0 0 0 0
............................................................................................................TTGTATTATTGCAGGAGCTGATC......................................... 23 0 2 3.00 6 3 1 2 0 0
...............................................................................................................TATTATTGCAGGAGCTGATCTACCA.................................... 25 0 2 2.50 5 5 0 0 0 0
.........................................................................TGATCTTTGCCATGTTTTCATTGGGC......................................................................... 26 0 2 2.50 5 5 0 0 0 0
.....................................................................................................GTATTGGTTGTATTATTGCAGGAGC.............................................. 25 0 2 2.50 5 5 0 0 0 0
.......................................................................................................ATTGGTTGTATTATTGCAGGAGC.............................................. 23 0 2 2.50 5 5 0 0 0 0
....................................................................................................CGTATTGGTTGTATTATTGCAGGAGC.............................................. 26 0 2 2.50 5 5 0 0 0 0
...................................................................................................................................TACCACAGCGTCGCTGCCATACTGATC.............. 27 0 2 2.00 4 3 1 0 0 0
.............................................................................................................TGTATTATTGCAGGAGCTGATCTACCA.................................... 27 0 2 2.00 4 0 0 1 3 0
.........................................................................................................TGGTTGTATTATTGCAGGAGC.............................................. 21 0 2 2.00 4 4 0 0 0 0
......................................................................................................TATTGGTTGTATTATTGCAGGAGCTGA........................................... 27 0 2 2.00 4 3 1 0 0 0
...............................................................................................................TATTATTGCAGGAGCTGATCTACC..................................... 24 0 2 1.50 3 0 3 0 0 0
........................................................................................................TTGGTTGTATTATTGCAGGAGC.............................................. 22 0 2 1.50 3 3 0 0 0 0
.........................................................................................................TGGTTGTATTATTGCAGGAGCTGAT.......................................... 25 0 2 1.50 3 2 1 0 0 0
........................................................................................................TTGGTTGTATTATTGCAGGAGCTGAT.......................................... 26 0 2 1.50 3 3 0 0 0 0
...................................................................................................................................TACCACAGCGTCGCTGCCATACTGATCC............. 28 0 2 1.50 3 2 0 1 0 0
........................................................................................................TTGGTTGTATTATTGCAGGAGCTG............................................ 24 0 2 1.50 3 2 1 0 0 0
.....................................................................................................GTATTGGTTGTATTATTGCAGGAG............................................... 24 0 2 1.00 2 2 0 0 0 0
.........................................................................................................TGGTTGTATTATTGCAGGAGCTGATCA........................................ 27 1 2 1.00 2 1 0 1 0 0
...............TCAGCACGGGGGGCATCATCGC....................................................................................................................................... 22 0 2 1.00 2 0 0 2 0 0
...............................................................................................................................GATCTACCACAGCGTCGCTGC........................ 21 0 2 1.00 2 0 0 2 0 0
..................................CGCCAAGACGATTTACGTGAGTGCCG................................................................................................................ 26 0 2 1.00 2 0 2 0 0 0
..TGCCTCACCTCCCTCAGCACGGG................................................................................................................................................... 23 0 2 1.00 2 2 0 0 0 0
.....................................................................................................................TGCAGGAGCTGATCTACCACAGCGTCGC........................... 28 0 2 1.00 2 0 2 0 0 0
.........................................................................................................TGGTTGTATTATTGCAGTAGCTGATC......................................... 26 1 2 1.00 2 2 0 0 0 0
..............................................................................................................................................CGCTGCCATACTGATCCTGGCCGC...... 24 0 2 1.00 2 0 0 2 0 0
........................................................................................................TTGGTTGTATTATTGCAGGAGCT............................................. 23 0 2 1.00 2 2 0 0 0 0
............................................................................................................TTGTATTATTGCAGGAGCTGATCTACCA.................................... 28 0 2 1.00 2 2 0 0 0 0
...................................................................................................................................TACCACAGCGTCGCTGCCATACTG................. 24 0 2 1.00 2 1 0 1 0 0
.........................................................................TGATCTTTGCCATGTTTTCATTGGGCCC....................................................................... 28 0 2 1.00 2 0 0 2 0 0
..................................................................................................................TATTGCAGGAGCTGATCTACCACAACA............................... 27 2 2 1.00 2 2 0 0 0 0
.....................................................................................................GTATTGGTTGTATTATTGCAGGAGCTC............................................ 27 1 2 1.00 2 2 0 0 0 0
......................................................................................................................................................TACTGATCCTGGCCGCATCT.. 20 0 1 1.00 1 1 0 0 0 0
......................................................................................................TATTGGTTGTATTATTGCAGGAGCTGATC......................................... 29 0 2 1.00 2 0 2 0 0 0
...............TCAGCACGGGGGGCATCATCG........................................................................................................................................ 21 0 2 1.00 2 0 1 1 0 0
.........................................................................................................TGGTTGTATTATTGCAGGAGCTG............................................ 23 0 2 1.00 2 1 0 1 0 0
.........................................................................TGATCTTTGCCATGTTTTCATTGGG.......................................................................... 25 0 2 1.00 2 2 0 0 0 0
..................................CGCCAAGACGATTTACGTGAGT.................................................................................................................... 22 0 2 1.00 2 2 0 0 0 0
...............................................TACGTGAGTGCCGCAAGCCCTT....................................................................................................... 22 0 2 1.00 2 0 1 1 0 0
......................................................................................................TATTGGTTGTATTATTGCAGGA................................................ 22 0 2 1.00 2 2 0 0 0 0
...............TCAGCACGGGGGGCATCATC......................................................................................................................................... 20 0 2 1.00 2 0 1 1 0 0
......................................................................................................TATTGGTTGTATTATTGCCGGAG............................................... 23 1 2 0.50 1 1 0 0 0 0
...........................................................................................................TTTGTATTATTGCAGGAGCTGATCTACC..................................... 28 1 2 0.50 1 0 1 0 0 0
.............................................TTTACGTGAGTGCCGCAAGCCCTTG...................................................................................................... 25 0 2 0.50 1 0 0 1 0 0
...............TCAGCACGGGGGGCATCATCGCCAAG................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0
...................................................................................................................................TACCACAGCGTCGCTGCCATACT.................. 23 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................GCGTCGCTGCCATACTGATCCTGGC......... 25 0 2 0.50 1 0 0 1 0 0
...............TCAGCACGGGGGGCATCATCGCCA..................................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0
.............................................................................................................................................TCGCTGCCATACTGATCCTGGCCG....... 24 0 2 0.50 1 0 0 1 0 0
............................................................................................................TTGTATTATTGCAGGAGCTGAT.......................................... 22 0 2 0.50 1 1 0 0 0 0
........................................GACGATTTACGTGAGTGCCG................................................................................................................ 20 0 2 0.50 1 0 1 0 0 0
...................................................................................................................................................CCATACTGATCCTGGCCGC...... 19 0 2 0.50 1 0 0 1 0 0
.....................................................................................................................................................ATACTGATCCTGGCCGCATC... 20 0 2 0.50 1 0 0 1 0 0
....................................................GAGTGCCGCAAGCCCTTGCATT.................................................................................................. 22 0 2 0.50 1 0 0 1 0 0
......................................................................................................TATTGGTTGTATTATTGCAGAGC............................................... 23 3 2 0.50 1 0 1 0 0 0
......................................................................................................TATTGGTTATATTATTGCAGGAGC.............................................. 24 1 2 0.50 1 0 1 0 0 0
...................................................................................................CCGTATTGGTTGTATTATTGCAGGAGC.............................................. 27 0 2 0.50 1 1 0 0 0 0
..................................................................................................................TATTGCAGGAGCTGATCTACCA.................................... 22 0 2 0.50 1 0 1 0 0 0
.........................................................................................................TGGTTGTATTATTGCAGGAGCTGATT......................................... 26 1 2 0.50 1 0 1 0 0 0
...................................................................................................................................TACCACAGCGTCGCTGCCATACTGAT............... 26 0 2 0.50 1 0 0 1 0 0
..........................................................................................TCATTGGGCCCGTATTGGTTGTATT......................................................... 25 0 2 0.50 1 0 1 0 0 0
...................................................................................CATGTTTTCATTGGGCCCGTATTGG................................................................ 25 0 2 0.50 1 0 1 0 0 0
...............TCAGCACGGGGGGCATCATCGCCAA.................................................................................................................................... 25 0 2 0.50 1 0 0 1 0 0
..........................................................................................................................GAGCTGATCTACCACAGCGTCC............................ 22 1 2 0.50 1 0 1 0 0 0
.....................................................................................TGTTTTCATTGGGCCCGTATTGGT............................................................... 24 0 2 0.50 1 1 0 0 0 0
......................................................................................................TATTGGTTGTATTATTGCAGGAGCT............................................. 25 0 2 0.50 1 0 1 0 0 0
..............................................TTACGTGAGTGCCGCAAGCCCT........................................................................................................ 22 0 2 0.50 1 0 0 1 0 0
.................................TCGCCAAGACGATTTACGTGAGTGCCGCA.............................................................................................................. 29 0 2 0.50 1 0 0 1 0 0
.................AGCACGGGGGGCATCATCGCCAAGA.................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
............................................................................................................TTGTATTATTGCAGGAGCTGATCT........................................ 24 0 2 0.50 1 0 1 0 0 0
........................................................................TTGATCTTTGCCATGTTTTCATTGGGCCC....................................................................... 29 0 2 0.50 1 0 0 1 0 0
...............................................TACGTGAGTGCCGCAAGCCCTTGC..................................................................................................... 24 0 2 0.50 1 0 0 1 0 0
...................................................................................................................................TACCACAGCGTCGCTGCCATAC................... 22 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................TACCACAGCGTCGCTGCCATACTGA................ 25 0 2 0.50 1 0 0 1 0 0
..................................CGCCAAGACGATTTACGTGAGCGC.................................................................................................................. 24 1 2 0.50 1 0 1 0 0 0
.........................................................................TTATCTTTGCCATGTTTTCATTGGGCC........................................................................ 27 1 2 0.50 1 0 0 0 0 1
.............................................................................................................TGTATTATTGCAGGAGCTGATCTAC...................................... 25 0 2 0.50 1 0 1 0 0 0
........................................................................................................TTGGTTGTATTATTGCAGGAG............................................... 21 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................GATCTACCACAGCGTCGCTGCCATACTG................. 28 0 2 0.50 1 0 0 1 0 0
.................................................................................................................................................TGCCATACTGATCCTGGCCGCAT.... 23 0 2 0.50 1 0 0 1 0 0
.............................................................................................................TGTATTATTGCAGGAGCTGATCTACC..................................... 26 0 2 0.50 1 0 0 1 0 0
.......................................................................................................ATTGGTTGTATTATTGCAGGAG............................................... 22 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................CGCTGCCATACTGATCCTGGC......... 21 0 2 0.50 1 1 0 0 0 0
.........................................................................TGATCTTTGCCATGTTTTCATTG............................................................................ 23 0 2 0.50 1 0 0 1 0 0
..................................................................................................................TATTGCAGGAGCTGATCTACC..................................... 21 0 2 0.50 1 0 1 0 0 0
..................................................................................................................TATTGCAGGAGCTGATCTACCACA.................................. 24 0 2 0.50 1 0 1 0 0 0
...................................................................................................................ATTGCAGGAGCTGATCTACCACAGC................................ 25 0 2 0.50 1 0 1 0 0 0
...............................................................................TTGCCATGTTTTCATTGGGCCCGTAT................................................................... 26 0 2 0.50 1 0 0 1 0 0
......................................................................................................TATTGGTTGGATTATTGCAGGAGC.............................................. 24 1 2 0.50 1 1 0 0 0 0
..................................................................................................................TATTGCAGGAGCTGATCTAC...................................... 20 0 2 0.50 1 0 1 0 0 0
........................................................................................................TTGGTTGTATTATTGCAGGAGCTTA........................................... 25 1 2 0.50 1 1 0 0 0 0
............................................................................................................TTGTATTATTGCAGGAGCTGA........................................... 21 0 2 0.50 1 1 0 0 0 0
.................................TCGCCAAGACGATTTACGTGAGTGCC................................................................................................................. 26 0 2 0.50 1 0 0 1 0 0
..................................................................................................................TATTGCAGGAGCTGATCTACCACAGCGT.............................. 28 0 2 0.50 1 0 1 0 0 0
...............TCAGCACGGGGGGCATCATCGCCAAGAC................................................................................................................................. 28 0 2 0.50 1 0 1 0 0 0
...............TCAGCACGGGGGGCATCATCGTCA..................................................................................................................................... 24 1 2 0.50 1 0 0 1 0 0
......................................................................................................TATTGGTTGTATTTTTGCAGGAGC.............................................. 24 1 2 0.50 1 0 1 0 0 0
...................CACGGGGGGCATCATCGCCAAGACG................................................................................................................................ 25 0 2 0.50 1 0 1 0 0 0
..................................................................................................................TATTGCAGGAGCTGATCTACCACAGC................................ 26 0 2 0.50 1 0 1 0 0 0
.........................................................................................................TGGTTGTATTATTGCAGG................................................. 18 0 2 0.50 1 1 0 0 0 0
.....................................................................................................GTATTGGTTGTGTTGTTGC.................................................... 19 2 13 0.08 1 0 0 1 0 0
.................................................................................................GCCCGTATTGTTGGAATTA........................................................ 19 3 20 0.05 1 0 0 1 0 0
..................ACAACGGGGGCATCATCGC....................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

GGACGGAGTGGAGGGAGTCGTGCCCCCCGTAGTAGCGGTTCTGCTAAATGCACTCACGGCGTTCGGGAACGTAACTAGAAACGGTACAAAAGTAACCCGGGCATAACCAACATAATAACGTCCTCGACTAGATGGTGTCGCAGCGACGGTATGACTAGGACCGGCGTAGATA
**************************************************................((.((..(((.....((((....................))))....)))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 M062
head
 GSM444067
head
.................................AGCGGTTCTGCTAAATGCACTCAC................................................................................................................... 24 0 2 3.50 7 7 0 0 0 0
..................................GCGGTTCTGCTAAATGCACTCAC................................................................................................................... 23 0 2 2.50 5 2 3 0 0 0
.................................AGCGGTTCTGCTAAATGCACTCA.................................................................................................................... 23 0 2 2.50 5 5 0 0 0 0
..............................AGTAGCGGTTCTGCTAAATGCACTCA.................................................................................................................... 26 0 2 1.50 3 2 0 1 0 0
...........................................................CGTTCGGGAACGTAACTAGAAACG......................................................................................... 24 0 2 1.50 3 1 1 1 0 0
...............................GTAGCGGTTCTGCTAAATGCACTCA.................................................................................................................... 25 0 2 1.00 2 2 0 0 0 0
................................................................GGGAACGTAACTAGAAACG......................................................................................... 19 0 2 1.00 2 0 1 1 0 0
...................................................................................................................................................GGTATGACTAGGACCGGCGTAGAT. 24 0 1 1.00 1 0 0 1 0 0
..............................................................TCGGGAACGTAACTAGAAACG......................................................................................... 21 0 2 0.50 1 1 0 0 0 0
.....................................GTTCTGCTAAATGCACTCACGGCG............................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
..............................AGTAGCGGTTCTGCTAAATGCACT...................................................................................................................... 24 0 2 0.50 1 0 1 0 0 0
............................................................GTTCGGGAACGTAACTAGAAACG......................................................................................... 23 0 2 0.50 1 1 0 0 0 0
.........................................................GGCGTTCGGGAACGTAACTAGAAAC.......................................................................................... 25 0 2 0.50 1 0 1 0 0 0
.............................................................TTCGGGAACGTAACTAGAAACG......................................................................................... 22 0 2 0.50 1 1 0 0 0 0
..................................GCGGTTCTGCTAAATGCACTCA.................................................................................................................... 22 0 2 0.50 1 0 0 1 0 0
...............................................................CGGGAACGTAACTAGAAACG......................................................................................... 20 0 2 0.50 1 0 0 1 0 0
..........................................................................................AGTAACCCGGGCATAACCAACAT........................................................... 23 0 2 0.50 1 1 0 0 0 0
...............................................................................................CCCGGGCATAACCAACATAATAA...................................................... 23 0 2 0.50 1 1 0 0 0 0
......................CCCCCCGTAGTAGCGGTTCTGCTAAAT........................................................................................................................... 27 0 2 0.50 1 0 0 0 1 0
................................TAGCGGTTCTGCTAAATGCACTC..................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................................GGTGTCGCAGCGACGGTATGACTG............... 24 1 2 0.50 1 0 0 1 0 0
..................................................................................................GGGCATAACCAACATAATAA...................................................... 20 0 2 0.50 1 0 1 0 0 0
....................................GGTTCTGCTAAATGCACTCACGGCGT.............................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
...................................CGGTTCTGCTAAATGCACTCAC................................................................................................................... 22 0 2 0.50 1 0 1 0 0 0
.................................AGCGGTTCTGCTAAATGCACTCACGGCG............................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
...............................................................CGGGAACGTAACTAGAAACGGT....................................................................................... 22 0 2 0.50 1 0 0 1 0 0
...................................................................................................................TAACGTCCTCGACTAGATGGT.................................... 21 0 2 0.50 1 1 0 0 0 0
...........................................................CGTTCGGGAACGTAACTAGAAACGGT....................................................................................... 26 0 2 0.50 1 0 0 1 0 0
..............................AGTAGCGGTTCTGCTAAATGCACTCAC................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0
.....................................................................................ACAAAAGTAACCCGGGCATAAA................................................................. 22 1 2 0.50 1 0 1 0 0 0
..........................................................GCGTTCGGGAACGTAACTAGAAAC.......................................................................................... 24 0 2 0.50 1 1 0 0 0 0
...................................CGGTTCTGCTAAATGCACTCACG.................................................................................................................. 23 0 2 0.50 1 0 0 0 1 0
...........................................................................................GTAACCCGGGCATAACCAACATAA......................................................... 24 0 2 0.50 1 1 0 0 0 0
...................................CGGTTCCGCTAAATGCACTCAC................................................................................................................... 22 1 2 0.50 1 0 0 1 0 0
.........................................................GGCGTTCGGGAACGTAACTAG.............................................................................................. 21 0 2 0.50 1 0 1 0 0 0
.................................................................GGAACGTAACTAGAAACG......................................................................................... 18 0 2 0.50 1 0 1 0 0 0
.GGCGGAGTGGAGGGAGGCG........................................................................................................................................................ 19 2 10 0.40 4 4 0 0 0 0
...............TGTCGCGCCCCGCGTAGTAGC........................................................................................................................................ 21 3 6 0.17 1 1 0 0 0 0
..ACGGAGTGGCGGGAATCTTG...................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 1
...................GTGCCACCCGTAGTAGTG....................................................................................................................................... 18 2 13 0.08 1 1 0 0 0 0
.GGCGGAGTGGAGGGAGGC......................................................................................................................................................... 18 2 13 0.08 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:8845270-8845441 + dps_2588 CCTGCCTCACCTCCCTCAGCACGGGGGGCATCATCGCCAAGACGATTTACGTGAGTG-------------CCGC---------------A--AGCC------CTT-----GCATTGATCTTTGCCATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCATTGGGCCCGTATT----------------G-GTTG--TA-TTATTGCAGGAGCTGATCTACCACAGCGTCGCTGCCATACTGATCCTGGCCGCATCTAT
droPer2 scaffold_15:1236586-1236757 + CCTGCCTCACCTCCCTCAGCACGGGGGGCATCATCGCCAAGACGATTTACGTGAGTG-------------GCGC---------------A--AGGC------CTT-----GCATTGATCTTTGCCATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTGATTGGGCCCGTATT----------------G-GTTG--TA-TTATTGCAGGAGCTGATCTACCACAGCGTCGCTGCCATACTGATCCTGGCCGCATCCAT
droWil2 scf2_1100000004909:11794961-11795123 + CCTGTCTGACATCGCTCAGCACTGGCGGCATTATAGCCAAAACCATTTATGTAAGTT-------------CAAA------------------TGGT------C-----TAA-----------------------------------------------CA---ATT------------------------------------------------------------------------------------------------------------------------------CAGATTCAGAATATT-------AATGAGTTT-GG-AA--TT-TCTTTGCAGGAGCTGATCTATCACAGCATTGCGGCCATATTGCTTTTGGCTTCCTCAAC
droVir3 scaffold_12970:9277334-9277515 + dvi_13731 CGTGCCTCACATCGCTGAGCACGGGCGGGCTCATCGCCAAGACAATCTATGTAAGTG-------------CT------TAG---------CTTGACTGCTGAATTGAA---GCCCGAACCTGAA-----------ATCGAAAACTA-AATGTTGACAAA---TTT-TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-AATTTACAGGAGCTGATCTATCATAGTGTTGCGGCCATACTGCTGCTCGCCTCGTCCGT
droMoj3 scaffold_6473:13370862-13371051 - CGTGTCTCACATCGCTAAGCACGGGCGGACTCATCGCCAAGACAATCTACGTGAGTG-------------AACA------------------A-----------------------AATATTACGATA----------------------------------G----------------------------------TTCTAATTTGAGCTGCGATTGCAAATGTAAT--------------------------------------------------------------TTA------------ATCAACCTCAAT----TGGGCTAT--TC-CATTTATAGGAGCTGATCTATCACTCTGTTGCCGCCATACTGTTGCTCGTCTCGTCCGC
droGri2 scaffold_14853:6005307-6005486 + CGTGCATCACATCGCTGAGCACGGGTGGCCTCATCGCCAAGACAATCTATGTAAGTGTGATTT-------------------------------------GAATT-----TAATTGATCTTGATTATGATTATGATTTG-TAACTATAACGTTGATCAAC---TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-GATTCACAGGAGCTGATCTATCATAGCGTTGCGGTCATTCTGCTGCTCGCCTCGTCCAT
droAna3 scaffold_13047:196617-196776 - CCTGTCTCACCTCGCTGAGCACCGGAGGCATTATTGCCAAGACGATTTATGTACGTT-------------CTAGTCGATAGCTTAATGAAACTGTA------C-----TCA-----------------------------------------------CC---CTT-----------------------------------------------------------------------------------------------------------------------------------------------------------CT-GTTGA--CC-CTTCTTCAGGAGCTGATCTACCACAGCGTGGCTGCCATCCTGCTGCTGGCCTCCTCCAT
droBip1 scf7180000396425:345880-346039 - CCTGTCTCACCTCGCTGAGCACGGGAGGCATCATTGCCAAGACGATTTATGTACGTT-------------CTAGTCGATAGTTAAGAGAAACTGTA------C-----TCA-----------------------------------------------CC---TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------TT-GTTAA--TC-CTCTTCCAGGAGCTGATCTACCACAGCGTAGCTGCTATTCTGCTGCTGGCCTCCTCCAT
droKik1 scf7180000302344:187545-187605 - CCTGCCTCACGTCGCTGAGTACGGGTGGAATTATAGCAAAGACGATTTACGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGC
droFic1 scf7180000453872:287948-288054 - CCTGTCTCACATCCCTGAGCACGGGGGGCATCATTGCCAAGACGATCTACGTGAGTG-------------ACAG--------------AA--AGCG------CAA-----GCTCTCATTTAATCTGTC----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCAATAGGAACATATT--------------------------------------------------------------------------------------
droEle1 scf7180000491193:267783-267843 + TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGCAGGAGCTGATTTACCACAGCGTTGCCGCCATCCTGATCCTCGTTTCGTCCAC
droRho1 scf7180000779986:454220-454275 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGGAGCTGATTTATCACAGCGTGGCCGCCATCCTGATCCTGGCCTCGTCCAC
droBia1 scf7180000301760:538575-538639 - CCTGTCTCACGTCGCTGAGCACGGGAGGCATTATTGCCAAGACGATCTATGTGAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTAAC
droTak1 scf7180000415843:409912-409981 - TATTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--TA-TGCTTGCAGGAGCTGATCTACCACAGCGTGGCCGCCATCCTGATCCTGGCGTCGTCCAC
droEug1 scf7180000408176:623463-623524 - TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTTATTAGGAGCTGATTTATCACAGCGTGGCCGCCATCCTGATCCTTGCCTCCTCCAC
dm3 chrX:11449779-11450008 - CCTGCCTCACGTCGCTCAGCACGGGCGGCATTATTGCCAAGACGATCTATGTGAGTATAATC------------------------------------------------------ATCATTGCTATA----------------------------------TCT-TT---------------------TGTATACTTTAGTATTAGCCATGGAACTCCAAACGTACA--TATATATACTTCGCCTTGTATCTG---------------------------------CAATCC------------GTGCATTTCAACGACC---A---TTAACCTTTTTGCAGGAGCTGATTTACCACAGTGTGGCCGCCATCCTGATCCTGGTCTCGTCCAC
droSim2 x:10849847-10850077 - CCTGCCTCACGTCGCTCAGCACGGGAGGCATTATTGCCAAGACGATCTATGTGAGTATAATC------------------------------------------------------ATCATTGCTATA----------------------------------TCT-TT---------------------TGGATTCCTTAGGATTAGCCATGGAACTCCAAACGTACACATATGTATGCTTGGCCTTATATCTG---------------------------------CCATCA------------CTGCATTTCAATGACC---A---TTCAC-CTTTTGCAGGAGCTGATCTACCACAGTGTGGCCGCCATCCTGATCCTGGTCTCGTCCAC
droSec2 scaffold_36:163864-164094 - CCTGCCTCACGTCGCTCAGCACGGGAGGCATTATTGCCAAGACGATCTATGTGAGTATAATC------------------------------------------------------ATCGTTGCTATA----------------------------------TCT-TT---------------------TGGATTACTTAGGATTAGCCATGGAACTCCAAACGTACACATATGTATGCTTGGCCTTATATCTG---------------------------------CAATCA------------CTGCATTTCAATGACC---A---TTCAC-CTTTTGCAGGAGCTGATTTACCACAGTGTGGCCGCCATCCTGATCCTGGTCTCGTCCAC
droYak3 X:10712632-10712794 + CCTGCCTCACGTCGCTCAGCACGGGCGGCATTATTGCCAAGACAATCTATGTAAGTATAATCTTAAAGAGCT------TTA---------ATTGGC------T-----AAA-----------------------------------------------CA---ATT--------------------------------------------------------------------------------------------------------------------------------------------------TT-AT----TGGTCAAT--AC-TTTTTGCAGGAGCTGATTTACCACAGTGTGGCCGCCATCCTGATCCTGGTCTCGTCCAC
droEre2 scaffold_4690:3712240-3712482 + der_366 CCTGCCTCACGTCGCTCAGCACAGGCGGAATTATTGCCAAGACGATCTATGTGAGTATAATCT-------------------------------------G----------------------CCA--------------------------------CTTACCT-GTACTACACTATACTATATACTGT---------------------------------GTATA--TAGATGTACTATACCATGTACATGGAGATGTGAATATTTTAGTACGAGAGCAGCCAACAATCA------------CTGCAATTCACT---C---A---TT-AC-ATCTTGCAGGAGCTGATTTACCACAGTGTGGCCGCCATCCTGATCCTGGCCTCGTCCAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCTGCCTCACCTCCCTCAGCACGGGGGGCATCATCGCCAAGACGATTTACGTGAGTG-------------CCGC---------------A--AGCC------CTT-----GCATTGATCTTTGCCATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCATTGGGCCCGTATT----------------G-GTTG--TA-TTATTGCAGGAGCTGATCTACCACAGCGTCGCTGCCATACTGATCCTGGCCGCATCTATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................TATT----------------G-GTTG--TA-TTATTGCAGGAGC..............................................24221.004200000070350
..................................................................................................................................................................................................................................................................................................................T----------------G-GTTG--TA-TTATTGCAGGAGCTGATC.........................................26219.0038030000140210
..................................................................................................................................................................................................................................................................................................................T----------------G-GTTG--TA-TTATTGCAGGAGCTGA...........................................2427.001401000020110
......................................................................................................................................................................................................................................................................................................................................TTG--TA-TTATTGCAGGAGCTGATCTAC......................................2626.00120000006060
......................................................................................................................................................................................................................................................................................................................................TTG--TA-TTATTGCAGGAGCTGATCTACC.....................................2726.00120201005130
.................................................................................................................................................................................................................................................................................................................TT----------------G-GTTG--TA-TTATTGCAGGAGCTGATC.........................................2725.501100000000110
.................................................................................................................................................................................................................................................................................................................TT----------------G-GTTG--TA-TTATTGCAGGAGCTGA...........................................2525.501100000000110
...............................................................................................................................................................................................................................................................................................................TATT----------------G-GTTG--TA-TTATTGCAGGAGCTG............................................2623.5070000001060
...............................................................................................................................................................................................................................................................................................................TATT----------------G-GTTG--TA-TTATTGCAGGAG...............................................2323.0060000000060
......................................................................................................................................................................................................................................................................................................................................TTG--TA-TTATTGCAGGAGCTGATC.........................................2323.0060200001030
...........................................................................................................................................................................................................................................................................................................................................TA-TTATTGCAGGAGCTGATCTACCA....................................2522.5050000000050
..................................................................................................................TGATCTTTGCCATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCATTGGGC.............................................................................................2622.5050000000050
..............................................................................................................................................................................................................................................................................................................GTATT----------------G-GTTG--TA-TTATTGCAGGAGC..............................................2522.5050000000050
................................................................................................................................................................................................................................................................................................................ATT----------------G-GTTG--TA-TTATTGCAGGAGC..............................................2322.5050000000050
.............................................................................................................................................................................................................................................................................................................CGTATT----------------G-GTTG--TA-TTATTGCAGGAGC..............................................2622.5050000000050
................................................................................................................................................................................................................................................................................................................................................................TACCACAGCGTCGCTGCCATACTGATC..............2722.0040000001030
.......................................................................................................................................................................................................................................................................................................................................TG--TA-TTATTGCAGGAGCTGATCTACCA....................................2722.0040100000300
..................................................................................................................................................................................................................................................................................................................T----------------G-GTTG--TA-TTATTGCAGGAGC..............................................2122.0040000000040
...............................................................................................................................................................................................................................................................................................................TATT----------------G-GTTG--TA-TTATTGCAGGAGCTGA...........................................2722.0040000001030
...........................................................................................................................................................................................................................................................................................................................................TA-TTATTGCAGGAGCTGATCTACC.....................................2421.5030000003000
.................................................................................................................................................................................................................................................................................................................TT----------------G-GTTG--TA-TTATTGCAGGAGC..............................................2221.5030000000030
..................................................................................................................................................................................................................................................................................................................T----------------G-GTTG--TA-TTATTGCAGGAGCTGAT..........................................2521.5030000001020
.................................................................................................................................................................................................................................................................................................................TT----------------G-GTTG--TA-TTATTGCAGGAGCTGAT..........................................2621.5030000000030
................................................................................................................................................................................................................................................................................................................................................................TACCACAGCGTCGCTGCCATACTGATCC.............2821.5030100000020
.................................................................................................................................................................................................................................................................................................................TT----------------G-GTTG--TA-TTATTGCAGGAGCTG............................................2421.5030000001020
..............................................................................................................................................................................................................................................................................................................GTATT----------------G-GTTG--TA-TTATTGCAGGAG...............................................2421.0020000000020
..................................................................................................................................................................................................................................................................................................................T----------------G-GTTG--TA-TTATTGCAGGAGCTGATCA........................................2721.0020100000010
...............TCAGCACGGGGGGCATCATCGC....................................................................................................................................................................................................................................................................................................................................................................2221.0020200000000
............................................................................................................................................................................................................................................................................................................................................................GATCTACCACAGCGTCGCTGC........................2121.0020200000000
..................................CGCCAAGACGATTTACGTGAGTG-------------CCG................................................................................................................................................................................................................................................................................................................................2621.0020000002000
..TGCCTCACCTCCCTCAGCACGGG................................................................................................................................................................................................................................................................................................................................................................................2321.0020000000020
..................................................................................................................................................................................................................................................................................................................................................TGCAGGAGCTGATCTACCACAGCGTCGC...........................2821.0020000002000
...........................................................................................................................................................................................................................................................................................................................................................................CGCTGCCATACTGATCCTGGCCGC......2421.0020200000000
.................................................................................................................................................................................................................................................................................................................TT----------------G-GTTG--TA-TTATTGCAGGAGCT.............................................2321.0020000000020
......................................................................................................................................................................................................................................................................................................................................TTG--TA-TTATTGCAGGAGCTGATCTACCA....................................2821.0020000000020
................................................................................................................................................................................................................................................................................................................................................................TACCACAGCGTCGCTGCCATACTG.................2421.0020100000010
..................................................................................................................TGATCTTTGCCATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCATTGGGCCC...........................................................................................2821.0020200000000
..............................................................................................................................................................................................................................................................................................................GTATT----------------G-GTTG--TA-TTATTGCAGGAGCTC............................................2721.0020000000020
...................................................................................................................................................................................................................................................................................................................................................................................TACTGATCCTGGCCGCATCT..2011.0010000000010
...............................................................................................................................................................................................................................................................................................................TATT----------------G-GTTG--TA-TTATTGCAGGAGCTGATC.........................................2921.0020000002000
...............TCAGCACGGGGGGCATCATCG.....................................................................................................................................................................................................................................................................................................................................................................2121.0020100001000
..................................................................................................................................................................................................................................................................................................................T----------------G-GTTG--TA-TTATTGCAGGAGCTG............................................2321.0020100000010
..................................................................................................................TGATCTTTGCCATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCATTGGG..............................................................................................2521.0020000000020
..................................CGCCAAGACGATTTACGTGAGT.................................................................................................................................................................................................................................................................................................................................................2221.0020000000020
...............................................TACGTGAGTG-------------CCGC---------------A--AGCC------CTT-----...........................................................................................................................................................................................................................................................................................2221.0020100001000
...............................................................................................................................................................................................................................................................................................................TATT----------------G-GTTG--TA-TTATTGCAGGA................................................2221.0020000000020
...............TCAGCACGGGGGGCATCATC......................................................................................................................................................................................................................................................................................................................................................................2021.0020100001000
.............................................TTTACGTGAGTG-------------CCGC---------------A--AGCC------CTT-----G..........................................................................................................................................................................................................................................................................................2520.5010100000000
...............TCAGCACGGGGGGCATCATCGCCAAG................................................................................................................................................................................................................................................................................................................................................................2620.5010000001000
................................................................................................................................................................................................................................................................................................................................................................TACCACAGCGTCGCTGCCATACT..................2320.5010000000010
.......................................................................................................................................................................................................................................................................................................................................................................GCGTCGCTGCCATACTGATCCTGGC.........2520.5010100000000
...............TCAGCACGGGGGGCATCATCGCCA..................................................................................................................................................................................................................................................................................................................................................................2420.5010100000000
..........................................................................................................................................................................................................................................................................................................................................................................TCGCTGCCATACTGATCCTGGCCG.......2420.5010100000000
......................................................................................................................................................................................................................................................................................................................................TTG--TA-TTATTGCAGGAGCTGAT..........................................2220.5010000000010
........................................GACGATTTACGTGAGTG-------------CCG................................................................................................................................................................................................................................................................................................................................2020.5010000001000
................................................................................................................................................................................................................................................................................................................................................................................CCATACTGATCCTGGCCGC......1920.5010100000000
..................................................................................................................................................................................................................................................................................................................................................................................ATACTGATCCTGGCCGCATC...2020.5010100000000
....................................................GAGTG-------------CCGC---------------A--AGCC------CTT-----GCATT......................................................................................................................................................................................................................................................................................2220.5010100000000
...............................................................................................................................................................................................................................................................................................................TATT----------------G-GTTG--TA-TTATTGCAGAGC...............................................2320.5010000001000
............................................................................................................................................................................................................................................................................................................CCGTATT----------------G-GTTG--TA-TTATTGCAGGAGC..............................................2720.5010000000010
...............................................................................................................................................................................................................................................................................................................................................TATTGCAGGAGCTGATCTACCA....................................2220.5010000001000
..................................................................................................................................................................................................................................................................................................................T----------------G-GTTG--TA-TTATTGCAGGAGCTGATT.........................................2620.5010000001000
................................................................................................................................................................................................................................................................................................................................................................TACCACAGCGTCGCTGCCATACTGAT...............2620.5010100000000
...................................................................................................................................................................................................................................................................................................TCATTGGGCCCGTATT----------------G-GTTG--TA-TT.........................................................2520.5010000001000
............................................................................................................................CATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCATTGGGCCCGTATT----------------G-G...................................................................2520.5010000001000
...............TCAGCACGGGGGGCATCATCGCCAA.................................................................................................................................................................................................................................................................................................................................................................2520.5010100000000
.......................................................................................................................................................................................................................................................................................................................................................GAGCTGATCTACCACAGCGTCC............................2220.5010000001000
..............................................................................................................................TG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCATTGGGCCCGTATT----------------G-GT..................................................................2420.5010000000010
...............................................................................................................................................................................................................................................................................................................TATT----------------G-GTTG--TA-TTATTGCAGGAGCT.............................................2520.5010000001000
..............................................TTACGTGAGTG-------------CCGC---------------A--AGCC------CT.................................................................................................................................................................................................................................................................................................2220.5010100000000
.................................TCGCCAAGACGATTTACGTGAGTG-------------CCGC---------------A--.............................................................................................................................................................................................................................................................................................................2920.5010100000000
.................AGCACGGGGGGCATCATCGCCAAGA...............................................................................................................................................................................................................................................................................................................................................................2520.5010000000010
......................................................................................................................................................................................................................................................................................................................................TTG--TA-TTATTGCAGGAGCTGATCT........................................2420.5010000001000
.................................................................................................................TTGATCTTTGCCATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCATTGGGCCC...........................................................................................2920.5010100000000
...............................................TACGTGAGTG-------------CCGC---------------A--AGCC------CTT-----GC.........................................................................................................................................................................................................................................................................................2420.5010100000000
................................................................................................................................................................................................................................................................................................................................................................TACCACAGCGTCGCTGCCATAC...................2220.5010000000010
................................................................................................................................................................................................................................................................................................................................................................TACCACAGCGTCGCTGCCATACTGA................2520.5010100000000
.......................................................................................................................................................................................................................................................................................................................................TG--TA-TTATTGCAGGAGCTGATCTAC......................................2520.5010000001000
.................................................................................................................................................................................................................................................................................................................TT----------------G-GTTG--TA-TTATTGCAGGAG...............................................2120.5010000000010
............................................................................................................................................................................................................................................................................................................................................................GATCTACCACAGCGTCGCTGCCATACTG.................2820.5010100000000
..............................................................................................................................................................................................................................................................................................................................................................................TGCCATACTGATCCTGGCCGCAT....2320.5010100000000
.......................................................................................................................................................................................................................................................................................................................................TG--TA-TTATTGCAGGAGCTGATCTACC.....................................2620.5010100000000
................................................................................................................................................................................................................................................................................................................ATT----------------G-GTTG--TA-TTATTGCAGGAG...............................................2220.5010000000010
...........................................................................................................................................................................................................................................................................................................................................................................CGCTGCCATACTGATCCTGGC.........2120.5010000000010
..................................................................................................................TGATCTTTGCCATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCATTG................................................................................................2320.5010100000000
...............................................................................................................................................................................................................................................................................................................................................TATTGCAGGAGCTGATCTACC.....................................2120.5010000001000
...............................................................................................................................................................................................................................................................................................................................................TATTGCAGGAGCTGATCTACCACA..................................2420.5010000001000
................................................................................................................................................................................................................................................................................................................................................ATTGCAGGAGCTGATCTACCACAGC................................2520.5010000001000
........................................................................................................................TTGCCATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCATTGGGCCCGTAT.......................................................................................2620.5010100000000
...............................................................................................................................................................................................................................................................................................................................................TATTGCAGGAGCTGATCTAC......................................2020.5010000001000
......................................................................................................................................................................................................................................................................................................................................TTG--TA-TTATTGCAGGAGCTGA...........................................2120.5010000000010
.................................TCGCCAAGACGATTTACGTGAGTG-------------CC.................................................................................................................................................................................................................................................................................................................................2620.5010100000000
...............................................................................................................................................................................................................................................................................................................................................TATTGCAGGAGCTGATCTACCACAGCGT..............................2820.5010000001000
...............TCAGCACGGGGGGCATCATCGCCAAGAC..............................................................................................................................................................................................................................................................................................................................................................2820.5010000001000
...................CACGGGGGGCATCATCGCCAAGACG.............................................................................................................................................................................................................................................................................................................................................................2520.5010000001000
...............................................................................................................................................................................................................................................................................................................................................TATTGCAGGAGCTGATCTACCACAGC................................2620.5010000001000
..................................................................................................................................................................................................................................................................................................................T----------------G-GTTG--TA-TTATTGCAGG.................................................1820.5010000000010
droPer2
CCTGCCTCACCTCCCTCAGCACGGGGGGCATCATCGCCAAGACGATTTACGTGAGTG-------------GCGC---------------A--AGGC------CTT-----GCATTGATCTTTGCCATG----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTGATTGGGCCCGTATT----------------G-GTTG--TA-TTATTGCAGGAGCTGATCTACCACAGCGTCGCTGCCATACTGATCCTGGCCGCATCCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................CTACCACAGCGTCGCTGCC.......................1911.001010000
........................................GACGATTTACGTGAGTG-------------GCGC---------------A--AGGC------...................................................................................................................................................................................................................................................................................................2611.001001000
droWil2
CCTGTCTGACATCGCTCAGCACTGGCGGCATTATAGCCAAAACCATTTATGTAAGTT-------------CAAA------------------TGGT------C-----TAA-----------------------------------------------CA---ATT------------------------------------------------------------------------------------------------------------------------------CAGATTCAGAATATT-------AATGAGTTT-GG-AA--TT-TCTTTGCAGGAGCTGATCTATCACAGCATTGCGGCCATATTGCTTTTGGCTTCCTCAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........CATCGCTCAGCACTGGCGGC............................................................................................................................................................................................................................................................................................................................................................................2013.00300210
............................................................................................................................................................................................................................................................................................................................................................GATCTATCACAGCATTGCGGCC.......................2212.00201100
..........................................................................................................................................................................................................................................................................................................................AATGAGTTT-GG-AA--TT-TCTTTGCA...................................................2311.00100010
..........................................................................................................................................................................................................................................................................................................................................................CTGATCTATCACAGCATTGCGGCCAT.....................2611.00101000
...........................................................................................................................................................................................................................................................................................................................ATGAGTTT-GG-AA--TT-TCTTTGC....................................................2111.00100010
.......GACATCGCTCAGCACTGG................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
droVir3
CGTGCCTCACATCGCTGAGCACGGGCGGGCTCATCGCCAAGACAATCTATGTAAGTG-------------CT------TAG---------CTTGACTGCTGAATTGAA---GCCCGAACCTGAA-----------ATCGAAAACTA-AATGTTGACAAA---TTT-TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-AATTTACAGGAGCTGATCTATCATAGTGTTGCGGCCATACTGCTGCTCGCCTCGTCCGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......CACATCGCTGAGCACGGGC...............................................................................................................................................................................................................................................................................................................................................................................1913.003000000000000000000003000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CGGCCATACTGCTGCTCGCCTCGTC...2513.003000000000000000000000000000000000000000000000000000000000000003
...............................................................................................................................................................................................................................................................................................................................................................CTATCATAGTGTTGCGGCC.......................1912.002020000000000000000000000000000000000000000000000000000000000000
......TCACATCGCTGAGCACGGGC...............................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................AGTGTTGCGGCCATACTGC................1911.001000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CATACTGCTGCTCGCCTCGTCC..2211.001000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GCTGATCTATCATAGTGTTGCG..........................2211.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GCTGATCTATCATAGTGTTGC...........................2111.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................TGACTGCTGAATTGAA---GCCCG.....................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
..TGCCTCACATCGCTGAGCACGG.................................................................................................................................................................................................................................................................................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
.......CACATCGCTGAGCACGGG................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................CTGAATTGAA---GCCCC.....................................................................................................................................................................................................................................................................................1570.433000000000000000000000000000000000000000000000000000000000300000
..................................CGCCAAGACAATCTATGAGC...................................................................................................................................................................................................................................................................................................................................................20110.091000000010000000000000000000000000000000000000000000000000000000
droMoj3
CGTGTCTCACATCGCTAAGCACGGGCGGACTCATCGCCAAGACAATCTACGTGAGTG-------------AACA------------------A-----------------------AATATTACGATA----------------------------------G----------------------------------TTCTAATTTGAGCTGCGATTGCAAATGTAAT--------------------------------------------------------------TTA------------ATCAACCTCAAT----TGGGCTAT--TC-CATTTATAGGAGCTGATCTATCACTCTGTTGCCGCCATACTGTTGCTCGTCTCGTCCGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................CGGACTCATCGCCAAGACAATCTA........................................................................................................................................................................................................................................................................................................................................................2411.001000001
.................................................................................................................................................................................................................................................................................................................................................................ATCACTCTGTTGCCGCCATACT..................2211.001100000
.................................................................................................................................................................................................................................................................................................................................TGGGCTAT--TC-CATTTATAG..................................................1911.001100000
......TCACATCGCTAAGCACGGGC...............................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droGri2
CGTGCATCACATCGCTGAGCACGGGTGGCCTCATCGCCAAGACAATCTATGTAAGTGTGATTT-------------------------------------GAATT-----TAATTGATCTTGATTATGATTATGATTTG-TAACTATAACGTTGATCAAC---TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-GATTCACAGGAGCTGATCTATCATAGCGTTGCGGTCATTCTGCTGCTCGCCTCGTCCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................GCACGGGTGGCCTCATCG.....................................................................................................................................................................................................................................................................................................................................................................1811.00110
....................................................................................................................................................................................................................................................................................................................................................................ATAGCGTTGCGGTCATTCTGCTG..............2311.00101
droAna3
CCTGTCTCACCTCGCTGAGCACCGGAGGCATTATTGCCAAGACGATTTATGTACGTT-------------CTAGTCGATAGCTTAATGAAACTGTA------C-----TCA-----------------------------------------------CC---CTT-----------------------------------------------------------------------------------------------------------------------------------------------------------CT-GTTGA--CC-CTTCTTCAGGAGCTGATCTACCACAGCGTGGCTGCCATCCTGCTGCTGGCCTCCTCCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......CACCTCGCTGAGCACCGGA...............................................................................................................................................................................................................................................................................................................................................................................1912.002020000
............................................................................................................................................................................................................................................................................................................................................................GATCTACCACAGCGTGGCTGCC.......................2211.001010000
.......CACCTCGCTGAGCACCGGAGGA............................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.......CACCTCGCTGAGCACCGGAGGC............................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.......................................................................................................................................................................................................................................................................................................................................................GAGCTGATCTACCACAGCGTGGCTG.........................2511.001010000
.........CCTCGCTGAGCACCGGAGGC............................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
CCTGTCTCACCTCGCTGAGCACGGGAGGCATCATTGCCAAGACGATTTATGTACGTT-------------CTAGTCGATAGTTAAGAGAAACTGTA------C-----TCA-----------------------------------------------CC---TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------TT-GTTAA--TC-CTCTTCCAGGAGCTGATCTACCACAGCGTAGCTGCTATTCTGCTGCTGGCCTCCTCCATSizeHit CountTotal NormTotal
No Reads
droKik1
CCTGCCTCACGTCGCTGAGTACGGGTGGAATTATAGCAAAGACGATTTACGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCSizeHit CountTotal NormTotal
No Reads
droFic1
CCTGTCTCACATCCCTGAGCACGGGGGGCATCATTGCCAAGACGATCTACGTGAGTG-------------ACAG--------------AA--AGCG------CAA-----GCTCTCATTTAATCTGTC----------------------------------T----------------------------------------------------------------T--------------------------------------------------------------TTCAATAGGAACATATT--------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGCAGGAGCTGATTTACCACAGCGTTGCCGCCATCCTGATCCTCGTTTCGTCCACSizeHit CountTotal NormTotal
No Reads
droRho1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGGAGCTGATTTATCACAGCGTGGCCGCCATCCTGATCCTGGCCTCGTCCACSizeHit CountTotal NormTotal
No Reads
droBia1
CCTGTCTCACGTCGCTGAGCACGGGAGGCATTATTGCCAAGACGATCTATGTGAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTAACSizeHit CountTotal NormTotal
No Reads
droTak1
TATTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--TA-TGCTTGCAGGAGCTGATCTACCACAGCGTGGCCGCCATCCTGATCCTGGCGTCGTCCACSizeHit CountTotal NormTotal
No Reads
droEug1
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTTATTAGGAGCTGATTTATCACAGCGTGGCCGCCATCCTGATCCTTGCCTCCTCCACSizeHit CountTotal NormTotal
No Reads
dm3
CCTGCCTCACGTCGCTCAGCACGGGCGGCATTATTGCCAAGACGATCTATGTGAGTATAATC------------------------------------------------------ATCATTGCTATA----------------------------------TCT-TT---------------------TGTATACTTTAGTATTAGCCATGGAACTCCAAACGTACA--TATATATACTTCGCCTTGTATCTG---------------------------------CAATCC------------GTGCATTTCAACGACC---A---TTAACCTTTTTGCAGGAGCTGATTTACCACAGTGTGGCCGCCATCCTGATCCTGGTCTCGTCCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................CCATCCTGATCCTGGTCTCGTCC..2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CTTTTTGCAGGAGCTGATTTACCAC...................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTTTGCAGGAGCTGATTTACC.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GTGGCCGCCATCCTGATC..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAGCACGGGCGGCATTATTGCCAAGAC..............................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTTTGCAGGAGCTGATTTAC......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATGGAACTCCAAACGTACA--T..................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAGCACGGGCGGCATTAT.......................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATTATTGCCAAGACGATC..........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ACAGTGTGGCCGCCATCCTGA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GCCTTGTATCTG---------------------------------CAATCC------------G.......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TACCACAGTGTGGCCGCC.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CCTGATCCTGGTCTCGTCCA.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................GATTTACCACAGTGTGGCCGCC.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCATTATTGCCAAGACGA............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AGCTGATTTACCACAGTGTGG............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CATCCTGATCCTGGTCTCGTCCT.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................................................................................................................................................................................TTTACCACAGTGTGGCCGCCATCCT..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CATCCTGATCCTGGTCTCGTCCA.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................TTATTGCCAAGACGATCTATGA.....................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................ATTATTGCCAAGACGATCT.........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCAGCACGGGCGGCATTATTG.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................................................................................................GTGGCCGCCATCCTGATCC.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CCTCACGTCGCTCAGCACG..................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................ATCCTGATCCTGGTCTCGT....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................TATTGCCAAGACGATCTATGTGAGTAA...............................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTGCAGGAGCTGATTTACCACAGTG...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTGCCAAGACGATCTAT.......................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCTGCCTCACGTCGCTCAGCACGGGAGGCATTATTGCCAAGACGATCTATGTGAGTATAATC------------------------------------------------------ATCATTGCTATA----------------------------------TCT-TT---------------------TGGATTCCTTAGGATTAGCCATGGAACTCCAAACGTACACATATGTATGCTTGGCCTTATATCTG---------------------------------CCATCA------------CTGCATTTCAATGACC---A---TTCAC-CTTTTGCAGGAGCTGATCTACCACAGTGTGGCCGCCATCCTGATCCTGGTCTCGTCCACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................GGCCGCCATCCTGATCCTG...........1911.00100100000000000000
..................GCACGGGAGGCATTATTGCCAAGAC..............................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
droSec2
CCTGCCTCACGTCGCTCAGCACGGGAGGCATTATTGCCAAGACGATCTATGTGAGTATAATC------------------------------------------------------ATCGTTGCTATA----------------------------------TCT-TT---------------------TGGATTACTTAGGATTAGCCATGGAACTCCAAACGTACACATATGTATGCTTGGCCTTATATCTG---------------------------------CAATCA------------CTGCATTTCAATGACC---A---TTCAC-CTTTTGCAGGAGCTGATTTACCACAGTGTGGCCGCCATCCTGATCCTGGTCTCGTCCACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................CCATCCTGATCCTGGTCTCGTCCA.2411.0010010
..................................................................................................................................................................................................................................................................................................................................................................................ATCCTGATCCTGGTCTCGTC...2011.0010010
..........GTCGCTCAGCACGGGAGG.............................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
CCTGCCTCACGTCGCTCAGCACGGGCGGCATTATTGCCAAGACAATCTATGTAAGTATAATCTTAAAGAGCT------TTA---------ATTGGC------T-----AAA-----------------------------------------------CA---ATT--------------------------------------------------------------------------------------------------------------------------------------------------TT-AT----TGGTCAAT--AC-TTTTTGCAGGAGCTGATTTACCACAGTGTGGCCGCCATCCTGATCCTGGTCTCGTCCACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................TGATTTACCACAGTGTGGCCGC........................2211.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................GCTGATTTACCACAGTGTGGCC..........................2211.00100100000000
droEre2
CCTGCCTCACGTCGCTCAGCACAGGCGGAATTATTGCCAAGACGATCTATGTGAGTATAATCT-------------------------------------G----------------------CCA--------------------------------CTTACCT-GTACTACACTATACTATATACTGT---------------------------------GTATA--TAGATGTACTATACCATGTACATGGAGATGTGAATATTTTAGTACGAGAGCAGCCAACAATCA------------CTGCAATTCACT---C---A---TT-AC-ATCTTGCAGGAGCTGATTTACCACAGTGTGGCCGCCATCCTGATCCTGGCCTCGTCCACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................GATTTACCACAGTGTGGCCGC........................2111.0010000010
............................................................................................................................................................................................................................................................................................................................................................GATTTACCACAGTGTGGCC..........................1911.0010100000

Generated: 05/18/2015 at 05:00 AM