ID:

dps_2579

 Coordinate:

XL_group1a:8229185-8229335 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.2 -18.0 -18.0

Flybase annnotation

exon [dpse_GLEANR_11600:1]; CDS [Dpse\GA23089-cds]; intron [Dpse\GA23089-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CATGGCAAGGGCGCCTTTCGCATGGAGGACTGCTTCATAACCGCCACAAAGTGGGTCAAGTGTGAAGTCCAAAACAACAATCCATTCGCATAAGTTTCCACTGTAGTACAACACAGTCTGGTTGCCAATGCACTAGAAATCAACATATCAATCGATCAATAACAATTCTCAAATACACACATACACAATGCAATGAAAGTGTGTAAGTTTGTTTCTTTTCGCTGCGTGCGTCGAGTGGATTGTTGATCAGT
**************************************************.((((....(((((((..................))))))).....))))((((........))))((((((.((....))))))))................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 GSM444067
head
 GSM343916
embryo
 SRR902012
CNS imaginal disc
 M040
female body
 SRR902010
ovaries
 V112
male body
..........................................................................................TAAGTTTCCACTGTAGTACAACACAGTC..................................................................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0 0
......................................................................................CGCATAAGTTTCCACTGTAG................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0
............................................CACAAAGTGGGTCAAGTGTGAAGTC...................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................AATCATAGTGTGTAAGATTGTT...................................... 22 3 3 0.33 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................TGCGTGCGTCGAGTGGACTGG........ 21 2 3 0.33 1 0 0 0 1 0 0 0
......................................................................................................................................................................................GCACAATGCACTGAAAGTG.................................................. 19 2 4 0.25 1 0 0 1 0 0 0 0
.......................................................GCAAGTGTGAGGTCCAAAA................................................................................................................................................................................. 19 2 19 0.05 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................CGGTGGCTTGTTGATCAGT 19 3 19 0.05 1 0 0 0 0 1 0 0
............................................CACAAAGTGGTACAGGTGT............................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1
...............................................................................................................................ATGCACAAGAATTCAACA.......................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

GTACCGTTCCCGCGGAAAGCGTACCTCCTGACGAAGTATTGGCGGTGTTTCACCCAGTTCACACTTCAGGTTTTGTTGTTAGGTAAGCGTATTCAAAGGTGACATCATGTTGTGTCAGACCAACGGTTACGTGATCTTTAGTTGTATAGTTAGCTAGTTATTGTTAAGAGTTTATGTGTGTATGTGTTACGTTACTTTCACACATTCAAACAAAGAAAAGCGACGCACGCAGCTCACCTAACAACTAGTCA
**************************************************.((((....(((((((..................))))))).....))))((((........))))((((((.((....))))))))................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 GSM343916
embryo
 SRR902010
ovaries
.....................................................................GTTTTGTTGTTAGGTAAGCGT................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0
.......................................................................TTTGTTGTTAGGTAAGCGTAT............................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................CAAAGCGACTCAAGCAGCT................. 19 3 20 0.15 3 0 0 0 3
...........................................................................TTGTTACGAAAGCGAATTCAA........................................................................................................................................................... 21 3 8 0.13 1 0 0 1 0
..........................................................................................ATTCAAAGTTGGCATGATG.............................................................................................................................................. 19 3 14 0.07 1 0 0 1 0
.........................................................................................................................................TTGGTTGCATAGTTAGCAA............................................................................................... 19 3 18 0.06 1 0 1 0 0
..................................................................................................................................................................................................................CATCGAAAAGCGTCGCACG...................... 19 3 20 0.05 1 0 1 0 0
............................................................................................................................................................................................................................GCACGCACGCAGCTCACCG............ 19 3 20 0.05 1 0 1 0 0
................................................................................................................................................................................................................AACATAGAAACGCGGCGCA........................ 19 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:8229135-8229385 + dps_2579 CATGGCAAGGGCGCCTTTCGCATGGAGGACTGCTTCATAACCGCCACAAAGTGGGTCAAGTGTGAAGTCCAAAACAACAATCCATTCGCATAAGTTTCCACTGTAGTACAACACAGTCTGGTTGCCAATGCACTAGAAATCAACATATCAATCGATCAATAACAATTCTCAAAT--ACACACATACACAATGCAATGAAAGTGTGTAAGTTTGTTTCTTTTCGCTGCGTGCGTCGAGTGGATTGTTGATCAGT
droPer2 scaffold_15:589364-589616 + CACGGCAAGAGCGCCTTTCGCATGGAGGACTGCTTCATAACCGCCACAAAGTGGGTCAAGTGTGAAGTCCAAAACAACAATCCATTCGCATAAGTTTACACTGTAGCACAACACTGTCTGGTTGCCAATGCACTAGAAATCAACATATCAATCGATCAAGAACAATTCTCAAATACACACACATTCACAAAGCAATGAAAGTGTGTAAGTTTGTTTCTTTTCGCTGCGTGCATCGAGTGGATTGTTGATCAGT
droWil2 scf2_1100000004515:1984028-1984070 - CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CACACACACACGCAATACTGTGTAAGTATATATGTGTGT---------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CATGGCAAGGGCGCCTTTCGCATGGAGGACTGCTTCATAACCGCCACAAAGTGGGTCAAGTGTGAAGTCCAAAACAACAATCCATTCGCATAAGTTTCCACTGTAGTACAACACAGTCTGGTTGCCAATGCACTAGAAATCAACATATCAATCGATCAATAACAATTCTCAAAT--ACACACATACACAATGCAATGAAAGTGTGTAAGTTTGTTTCTTTTCGCTGCGTGCGTCGAGTGGATTGTTGATCAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................TAAGTTTCCACTGTAGTACAACACAGTC.......................................................................................................................................2813.0030000000030
......................................................................................CGCATAAGTTTCCACTGTAG...................................................................................................................................................2012.0020000000020
............................................CACAAAGTGGGTCAAGTGTGAAGTC........................................................................................................................................................................................2511.0010000010000
droPer2
CACGGCAAGAGCGCCTTTCGCATGGAGGACTGCTTCATAACCGCCACAAAGTGGGTCAAGTGTGAAGTCCAAAACAACAATCCATTCGCATAAGTTTACACTGTAGCACAACACTGTCTGGTTGCCAATGCACTAGAAATCAACATATCAATCGATCAAGAACAATTCTCAAATACACACACATTCACAAAGCAATGAAAGTGTGTAAGTTTGTTTCTTTTCGCTGCGTGCATCGAGTGGATTGTTGATCAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CACACACACACGCAATACTGTGTAAGTATATATGTGTGT---------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/18/2015 at 04:56 AM