ID:

dps_2574

 Coordinate:

XL_group1a:8067080-8067137 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.5 -8.3 -8.0

Flybase annnotation

CDS [Dpse\GA23081-cds]; exon [dpse_GLEANR_11591:3]; CDS [Dpse\GA23081-cds]; exon [dpse_GLEANR_11591:2]; intron [Dpse\GA23081-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------##################################################
GAGAGCGCGGAGGAAGCTAACGAGAAGTGGGAGCGAAGGCTGACGGATCGGTAATTTATAATTTTCATGGCCTATTGTGTTCATATAGTAGTCCCTGGTTATTCTCAGTCGGTACAAGTGCAGCCCTGTCCGGCATCTCAACGGTGGCCATCGCATCG
**************************************************.........(((..(((.((.((((((((....)))))))).)).)))..))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 GSM444067
head
..........................................................TAATTTTCATGGCCTATTGTG............................................................................... 21 0 1 3.00 3 3 0 0 0
............................................................................GTGTTCATATAGTAGTCCCTG............................................................. 21 0 1 1.00 1 1 0 0 0
...........................................................AATTTTCATGGCCTATTGTG............................................................................... 20 0 1 1.00 1 1 0 0 0
.............................................................TATTCATGGCCTATTGTGTTC............................................................................ 21 1 1 1.00 1 0 1 0 0
.............................................................TTTTCATGGCCTATTGTGTTC............................................................................ 21 0 1 1.00 1 0 1 0 0
.............................................................TTTTCATGGCCTATTGTGTTCA........................................................................... 22 0 1 1.00 1 0 0 1 0
................................................................................TCATATAGTAGTCCCTGGTTATCC...................................................... 24 1 1 1.00 1 1 0 0 0
.......................GGAGTGGTAGCGAAGTCTG.................................................................................................................... 19 3 14 0.21 3 0 0 3 0
.................................CGAAGGCTGGCGGATCGTAA......................................................................................................... 20 3 6 0.17 1 0 0 0 1
.......................GACGTGGTTGCGAAGGCT..................................................................................................................... 18 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

CTCTCGCGCCTCCTTCGATTGCTCTTCACCCTCGCTTCCGACTGCCTAGCCATTAAATATTAAAAGTACCGGATAACACAAGTATATCATCAGGGACCAATAAGAGTCAGCCATGTTCACGTCGGGACAGGCCGTAGAGTTGCCACCGGTAGCGTAGC
**************************************************.........(((..(((.((.((((((((....)))))))).)).)))..))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343916
embryo
........................TTCACACTCGTTTCCGAGTG.................................................................................................................. 20 3 6 0.17 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:8067030-8067187 + dps_2574 GAGAGCGCGGAGGAAGCTAACGAGAAGTGGGAGCGAAGGCTGACGGATCGGTAATTTATAATTTTCATGGCCTATTGTGTTCATATAGTAGTCCCTGGTTATTCTCAGTCGGTACAAGTGCAGCCCTGTCCGGCATCTCAACGGTGGCCATCGCATCG
droPer2 scaffold_15:425077-425226 + GAGAGCGAGGAGGAAGCTAACGAGAAGTGGGAGCGAAGGCTGACGGATCGGTAATTTATAATTTTCATGGCCTATTGTGTTCCTATAGTAGTCCCTGGTTATTCTCAGTCGGTACAAGT--------GTCCGGCATCTCTACGGTGGCCATCGCATCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GAGAGCGCGGAGGAAGCTAACGAGAAGTGGGAGCGAAGGCTGACGGATCGGTAATTTATAATTTTCATGGCCTATTGTGTTCATATAGTAGTCCCTGGTTATTCTCAGTCGGTACAAGTGCAGCCCTGTCCGGCATCTCAACGGTGGCCATCGCATCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................TAATTTTCATGGCCTATTGTG...............................................................................2113.0030000000030
............................................................................GTGTTCATATAGTAGTCCCTG.............................................................2111.0010000000010
...........................................................AATTTTCATGGCCTATTGTG...............................................................................2011.0010000000010
.............................................................TTTTCATGGCCTATTGTGTTC............................................................................2111.0010000001000
.............................................................TTTTCATGGCCTATTGTGTTCA...........................................................................2211.0010100000000
droPer2
GAGAGCGAGGAGGAAGCTAACGAGAAGTGGGAGCGAAGGCTGACGGATCGGTAATTTATAATTTTCATGGCCTATTGTGTTCCTATAGTAGTCCCTGGTTATTCTCAGTCGGTACAAGT--------GTCCGGCATCTCTACGGTGGCCATCGCATCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 04:55 AM