dps_2573

exon [dpse_GLEANR_10693:2]; CDS [Dpse\GA22596-cds]; exon [dpse_GLEANR_10693:1]; CDS [Dpse\GA22596-cds]; intron [Dpse\GA22596-in]

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

##################################################------------------------------------------------------################################################## CCACCAAAATGCGCACCCCCTTTGCCATCCAGGAGATCCTCGGCCTGGGCGTCGGGGCAGCCGCCTACCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCATCAGCAGGTGGCCGCCGCTGCAGCCACGCCCAGCTCCACGGAGGC ************************************************((....((.((.((......((....))....)).)).))..........))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	GSM444067 head	V112 male body	GSM343916 embryo	SRR902010 ovaries
.......................GGCGTCCAGGAGAACCTCGGCC.............................................................................................................	22	3	1	1.00	1	0	1	0	0	0	0
...............................................................CCTACCAGCAGCAGCAGCAGCAGCAGCA...............................................................	28	0	3	0.33	1	1	0	0	0	0	0
.........................................................................................CAACAACAGCAGCAGCAGCATC...........................................	22	0	11	0.27	3	2	0	0	1	0	0
..........................................GCCTGGGCGTCAAGGCAG..............................................................................................	18	2	4	0.25	1	0	0	1	0	0	0
.....................................................................................GCAGCAACAACAGCAGCAGC.................................................	20	0	20	0.20	4	4	0	0	0	0	0
.................................................................................AGCAGCAGCAACAACAGCAGC....................................................	21	0	20	0.20	4	4	0	0	0	0	0
..........................................................................................AACAACAGCAGCAGCAGCATC...........................................	21	0	11	0.18	2	2	0	0	0	0	0
............................................................................................CAACAGCAGCAGCAGCATCAGCA.......................................	23	0	12	0.08	1	1	0	0	0	0	0
................................................................................................AGCAGCAGCAGCTTCAGCAGG.....................................	21	1	14	0.07	1	0	0	0	0	1	0
................................................................CTACCAGCAGCAGCAGCAGC......................................................................	20	0	18	0.06	1	1	0	0	0	0	0
.........................................................................................CAACAACAGCAGCAGCAGCAT............................................	21	0	19	0.05	1	0	0	0	0	0	1
.........................................................................GCAGCAGCAGCAGCAGCAACAACAGC.......................................................	26	0	20	0.05	1	0	1	0	0	0	0
..............................................................................AGCAGCAGCAGCAACAACAGCA......................................................	22	0	20	0.05	1	0	0	0	1	0	0
............................................................................................CAACAGCAGCAGCAGCATCA..........................................	20	0	20	0.05	1	0	0	0	1	0	0
.........................................................................GCAGCAGCAGCAGCAGCAAC.............................................................	20	0	20	0.05	1	0	0	0	0	1	0
.......................................................................................AGCAACAACAGCAGCAGCAGC..............................................	21	0	20	0.05	1	0	0	0	0	1	0

GGTGGTTTTACGCGTGGGGGAAACGGTAGGTCCTCTAGGAGCCGGACCCGCAGCCCCGTCGGCGGATGGTCGTCGTCGTCGTCGTCGTCGTTGTTGTCGTCGTCGTCGTAGTCGTCCACCGGCGGCGACGTCGGTGCGGGTCGAGGTGCCTCCG ************************************************((....((.((.((......((....))....)).)).))..........))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902012 CNS imaginal disc	M040 female body
.......................CGGGAGGTTATCTAGGAGC................................................................................................................	19	3	20	0.45	9	9	0
............................................................................................GTTGTCGTCGTCGTCGTA............................................	18	0	20	0.05	1	0	1
.....TTTTACGGGTGGGGCTAAC..................................................................................................................................	19	3	20	0.05	1	0	1
............................CGTCCTCTAGCAGCCTGAC...........................................................................................................	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
dp5	XL_group1a:8045355-8045508 -	dps_2573	CCACCAAAAT-GCG----------CACCCCCTTTGCCAT----CC--AGGAGATCCTCGGCCTG---GGCGTCGGGG-----------------------------------------CAGC-CGCCTACCAGCA------------------------GCAGCAG------CAG---------CAGCAGCAACAACAGC---AGC---AG---CA---------------------------------GCATCA---------GC---------A---------GGTGGCCGCCGCTGCAGCCACGCCCAGC-----TCCACGGAGGC
droPer2	scaffold_15:403152-403308 -		CCACCAAAAT-GCG----------CACCCCCTTTGCCAT----CC--AGGAGATCCTCGGCCTG---GGCGTCGGGG-----------------------------------------CCGC-CGCCTACCAGCA------------------------GCAGCAG------CAA---------CAACAACAACAAC------------AA---------------------------CAGCAGCAGCAGCATCA---------GC---------A---------GGTGGCCGCCGCTGCAGCCACGCCCAGC-----TCCACGGAGGC
droWil2	scf2_1100000004909:11059797-11059980 +		CAACTAAAAT-GCG----------TACACCATTTGCCAT----CC--AAGAGATATTGGGCTTA---GGTGTGGGAG-----------------------------------------CAGC-TGCCTATCAGCA------------------------ACATCAG------CAGCAACAACAAC---------------AACAACAACA------ACAA------------------CAGCAGCAGCAACATCATCAACAACAACAACAACAGCA---------AGTGGCTGCTGCTGCTGCCACACCTTCA-----ATTACAGAAGC
droVir3	scaffold_12928:5113959-5114121 +	dvi_8970	CAACCAAAAT-GCG----------AACACCCTTTGCCAT----AC--AGGAGATCCTCGGCCTT---GGCGTCGGCG-----------------------------------TCGGCGTCGG-TGCCTATCAACA------------------------GCAGCAG------CAG---------CAACAGCAGCAACAGC---AGC---AG---CA------------------------------GCAACAATC---------GT---------C---------GCAGGCAGCTGCCGCTGCCACGCCCAGC-----GCCAACGAGGC
droMoj3	scaffold_6359:3617654-3617858 +		CGACCAAATT-GCG----------AACCCCCTTTGCCAT----AC--AGGAGATCCTCGGCCTG---GGCGTCGGTGTCGG-----------------------------TGTCGGCGTCGG-TGCCTACCAGCA------------------------GCAACAG------CAGCAACAACAAC---------------AGCAGCAGCAA---CA---A------------------CAGCAGCAACAGCAACAACAGCAGCAGCACCAACCACAACAATCATCGCAGGCAGCTGCCGCTGCCACGCCCAGC-----GCCATTGAGGC
droGri2	scaffold_14853:9813657-9813800 +		CCACCACCAG-CAC----------CACCCGTACAA--------CC--AGCAG-----CA----------------------------------------------------------------------------------GCATCTGCATCACCTGCAGCAGCTACAGCAG---CAGCAGCAGC---------------AGCAGC---AA---CAACAA------------------CAGCAGCAACAGCAACAGCAACAACAGCAGCAGCAACA---------GTTGGC-TGAG----------------C-----AG----CAGGC
droAna3	scaffold_13117:821613-821718 -		CCACCAAAAT-GCG----------AACCCCGTTCGCCAT----CC--AGGAGATCCTCGGCCTG---GG------------------------------------------------------CGCCTACCAGCA------------------------GCAG-----------------GCGGC---------------GGCC------------------------------------------GCAGCAGCCGTG----------------------------------------GCCGCCACGC-----------CCTCCGAGGC
droBip1	scf7180000391693:57392-57534 +		CGCATGCCCATGGCCAGGCAGCAGC---------------------------ATCCATTGCCTC---CG----------------------------------------------------------AATCATCA---------------------GCAGCTGCAG------------------CAGCAGCAACAGC------------A------ACAGCATCAGCAGCAACA------------GCACCATCAGTTGCAGCATCA---GCA---------------GCC----ATCG------CAC-CATCACCACAGCCAGACGGC
droKik1	scf7180000302276:414190-414318 -		TCACCGGCAC-GGG----------CACCAGCACGGGCAC-----------AGATCACCA------------------------------------GGCGGTGCATC------------CACC-CAGCTGCCACCA------------------------GCAACAG------CAG---------CAGCAGCAACAACAGC---AGC---AG---CA------------------------------GCATCATCACGCCCACCCGCA---------------------------------------------------TCCGCACTCGC
droFic1	scf7180000453925:690271-690422 +		CCCCCAGCAG-CAG----------CACCAGCAGCACTTG--G--CCCAGCAGCAGCTC---T--TCG----------CCGCCCAGCA------------------------GTTGCAGCTGC------ACCACCA---------------------GCAACTGCAGCAGCAG---CAAC------------AACAGC---AGCAGC---AA---CAGCAG---------CAGCA------------ACAGCAGCAGCAGCAACAACA---------------------------------------------------GCAGCAGCAGC
droEle1	scf7180000491009:11326-11468 -		TCATCCGAAT--------------CACCTGCATCAGCAT----CA--GCAACATCCATTGCCGC-------------------------------------------------------------------A---------------------------GCAGCAACAGCAG---CAGGCG---C------AACAGC---AGCAGC---AG---CA------------GG------CGCATCAGCAGCAGCAGCAGCA---------------GCA---------GGCGGC-ACAGCAGCAGCCACACC---A-----GCCACATCATC
droRho1	scf7180000770300:2648-2796 +		CCACCCGCAT-CCG----------CACCCGCATCCGCAT--C--CCCAGGCGCATCCC------TCG----------CTACCCGCCA-----------------------------------------TGCAGCA---GCACCACC---------TGCAACAGCAGCAG---------------CAGCAGCAACAACAGC---AGC---AG---CAAC---------AGCAACA------------GCAGCAGCAGGAGCAACAGCA---------------------------------------------------TCTGCAGGAGC
droBia1	scf7180000299102:705189-705340 -		CCACCCGCAC-CCG----------CATCCGCATCCGCAT--C--CCCAGGCGCATCCCTCCCTG---CC-------------CGCCA-----------------------------------------TGCAGCA---TCACCACC---------TGCAGCAGCAGCAGCAA---CAGC------------AACAGC---AGCAGC---AG---CAGCAA---------C---A------ACAGCAGCAGCAGCAGGAGCAACAGCA---------------------------------------------------TCTGCAGGAGC
droTak1	scf7180000415281:82741-82884 +		CCATGGAGCT-GCT----------CACGCCCTTCC------------TGAACACCCA------------------------------------------------------------------CGCCTACTCGCA------------------------GCAGCAG------CAACACCAGCAGC---------------AGCAGCAGCAA---CATCAG------CAGC------AACACCAGCAGCAACATCA---------GCA------------------ACATCCTCCTGCTCCGGCCACGCC--GC-----TC--CATCGGC
droEug1	scf7180000409759:863939-864091 -		CTATGACGAT-GGC----------CGCCTGTTATGCCAA----CT--ACGACATGTC-GTCC--CTG----------TCGCACGGCA-----------------------TGTCGGCCCTGTCCGCC---CTACA------------------------GCAGCAGCAGCAG---CAGC------------AACAAC---AGCAGC---AG---CAGCAA---------CAGCAGCAGCAGCA---GCACAG---------TCAGAC-----------------------------------------G----------CAGCAGCAGC
dm3	chr2R:20231790-20231939 +		CCCGCGGCAG-GAG----------CACCCCCTGCCCCGCAGTGCC--AAACGCTCCACAGCCCA-------------CAGC-----A------------------------------------CGCCTCCCAGCA------------------------GCAGCAG------CAGCAACAACAGC---------------AGCAGCAGCAA---CA---C------------------CAGCAGCAGCAACAACAGCAGCAGCAGCATCCCCAG--------------------------------------C-----AGCAACGCGGC
droSim2	3r:15953958-15954101 +		CCTCCAAAATTGAG----------CTCC--TAACCGCGC--C--CACAATTGC--------------CA--------T-----------------ATCGA-----------------------CGCC--CTCGCC---------------------GCAGCAGCAACACCAA---CAGCAGCAGC---------------AGCAGC---AG---CA---------------ACT---ATATCAGCAACATCAACAGCA-------------------------------------GCAGCAGCAACATTACGG-----TCCACCACCGC
droSec2	scaffold_23:100104-100271 -		CCTCAAGAAG-GAG----------CCTCCCCTGC--------------------------------------------AGC-----AGGCCACCATTGGGCAGATCACCCTGACGGCCATGTCCACG---GCGCA------------------------GCAGCAGCAGCAA---CAGCAGCAGC---------------AGCAGC---AACAACAACAA------CAGC------AACAGCAGCAGCAACAACAGCAGCAGCAGCAACCCCAG----------------------------C--------AG-----ACTACCGATGC
droYak3	X:17671974-17672121 +		CCATGGAGCT-GCT----------CACGCCCTTCC------------TGAACACCCA------------------------------------------------------------------CGCCCACTCGCAGCAGCTGCAAC---------TGCAACACCAGCAGCAG---CTGC------------AAC---AGCAGCAGC---A------AC---------AGCAACA------GCAGCAACAGCAGCAGCAGCATCAGCAGCACCAG----------------------------CAACATC-------------CTGCTGC
droEre2	scaffold_4845:21597791-21597946 +		CCCGCGGCAG-GAG----------CACCCCCTGCCCCGCAATGCC--AAACGCTCCACAGCCCA-------------CAGC-----A------------------------------------CGCCTCCCAGCA------------------------ACAGCAG------CAG---------CAGCAGCAACAACAGCAGCAGC---------AGC---------AGCAACA------CCAGCAGCAGCAGCAACAGCAGCAGCATCCCCAG--------------------------------------C-----AGCAACGCGGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

CCACCAAAAT-GCG----------CACCCCCTTTGCCAT----CC--AGGAGATCCTCGGCCTG---GGCGTCGGGG-----------------------------------------CAGC-CGCCTACCAGCA------------------------GCAGCAG------CAG---------CAGCAGCAACAACAGC---AGC---AG---CA---------------------------------GCATCA---------GC---------A---------GGTGGCCGCCGCTGCAGCCACGCCCAGC-----TCCACGGAGGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................CCTACCAGCA------------------------GCAGCAG------CAG---------CAGCAGCA.........................................................................................................................................	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAACAACAGC---AGC---AG---CA---------------------------------GCATC...........................................................................	22	11	0.27	3	0	2	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................GCAGCAACAACAGC---AGC---AG---C..................................................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AG---------CAGCAGCAACAACAGC---AGC---........................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AACAACAGC---AGC---AG---CA---------------------------------GCATC...........................................................................	21	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CAACAGC---AGC---AG---CA---------------------------------GCATCA---------GC---------A---------............................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................CTACCAGCA------------------------GCAGCAG------CAG---------C................................................................................................................................................	20	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAACAACAGC---AGC---AG---CA---------------------------------GCAT............................................................................	21	19	0.05	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................GCAGCAG------CAG---------CAGCAGCAACAACAGC---..............................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................AG------CAG---------CAGCAGCAACAACAGC---A.............................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................CAACAGC---AGC---AG---CA---------------------------------GCATCA---------.................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................GCAGCAG------CAG---------CAGCAGCAAC.......................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................AGCAACAACAGC---AGC---AG---CA---------------------------------GC..............................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

CCACCAAAAT-GCG----------CACCCCCTTTGCCAT----CC--AGGAGATCCTCGGCCTG---GGCGTCGGGG-----------------------------------------CCGC-CGCCTACCAGCA------------------------GCAGCAG------CAA---------CAACAACAACAAC------------AA---------------------------CAGCAGCAGCAGCATCA---------GC---------A---------GGTGGCCGCCGCTGCAGCCACGCCCAGC-----TCCACGGAGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................ACAAC------------AA---------------------------CAGCAGCAGCAGCATCA---------G................................................................	25	4	0.25	1	0	0	1	0	0	0
...............................................................................................................................TACCAGCA------------------------GCAGCAG------CAA---------CA...............................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0
....................................................................................................................................................................................................C------------AA---------------------------CAGCAGCAGCAGCATCA---------G................................................................	21	19	0.05	1	0	0	1	0	0	0

droWil2

CAACTAAAAT-GCG----------TACACCATTTGCCAT----CC--AAGAGATATTGGGCTTA---GGTGTGGGAG-----------------------------------------CAGC-TGCCTATCAGCA------------------------ACATCAG------CAGCAACAACAAC---------------AACAACAACA------ACAA------------------CAGCAGCAGCAACATCATCAACAACAACAACAACAGCA---------AGTGGCTGCTGCTGCTGCCACACCTTCA-----ATTACAGAAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................CAACAACA------ACAA------------------CAGCAGCAG..................................................................................	21	20	0.10	2	0	0	0	2	0
.............................................................................................................................................................................................................................................................CATCAACAACAACAACAACAGC......................................................	22	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................A------ACAA------------------CAGCAGCAGCAAC..............................................................................	18	20	0.10	2	0	0	0	2	0
..............................................................................................................................................................................................................AACA------ACAA------------------CAGCAGCAGCAACATC...........................................................................	24	11	0.09	1	0	0	0	1	0
......................................................................................................................................A------------------------ACATCAG------CAGCAACAACAAC---------------.................................................................................................................................	21	19	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................CA------ACAA------------------CAGCAGCAGCAA...............................................................................	18	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................AAC---------------AACAACAACA------ACAA------------------CAGCAGC....................................................................................	24	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................CAAC---------------AACAACAACA------ACAA------------------CAGCAGCAGC.................................................................................	28	20	0.05	1	0	0	1	0	0
......................................................................................................................................................................................AAC---------------AACAACAACA------ACAA------------------CAGCAGCAGC.................................................................................	27	20	0.05	1	0	0	0	1	0
......................................................................................................................................A------------------------ACATCAG------CAGCAACAAC...................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................CAACA------ACAA------------------CAGCAGCAGCA................................................................................	20	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................CAAC---------------AACAACAACA------ACAA------------------CAGCAGC....................................................................................	25	20	0.05	1	0	0	0	1	0

droVir3

CAACCAAAAT-GCG----------AACACCCTTTGCCAT----AC--AGGAGATCCTCGGCCTT---GGCGTCGGCG-----------------------------------TCGGCGTCGG-TGCCTATCAACA------------------------GCAGCAG------CAG---------CAACAGCAGCAACAGC---AGC---AG---CA------------------------------GCAACAATC---------GT---------C---------GCAGGCAGCTGCCGCTGCCACGCCCAGC-----GCCAACGAGGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................AACAGC---AGC---AG---CA------------------------------GCAACAATC---------.................................................................	22	5	0.40	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ACAGC---AGC---AG---CA------------------------------GCAACAATC---------.................................................................	21	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TCAACA------------------------GCAGCAG------CAG---------CAACAGCA.........................................................................................................................................	24	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGC---AGC---AG---CA------------------------------GCAACAATC---------.................................................................	19	17	0.12	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................CAGC---AGC---AG---CA------------------------------GCAACAATC---------.................................................................	20	17	0.12	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................G---------CAACAGCAGCAACAGC---AGC---A.......................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AACA------------------------GCAGCAG------CAG---------CAACAGCA.........................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AACAGCAGCAACAGC---AGC---AG---C..................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CAACAGC---AGC---AG---CA------------------------------GCAAC..............................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TATCAACA------------------------GCAGCAG------CAG---------C................................................................................................................................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CAACAGC---AGC---AG---CA------------------------------GCAACAAT...........................................................................	22	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AACAGC---AGC---AG---CA------------------------------GCAACAAT...........................................................................	21	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AG------CAG---------CAACAGCAGCAACAGC---AGC---AG---CA------------------------------...................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................G---------CAACAGCAGCAACAGC---AGC---AG---CA------------------------------GCA................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CAG---------CAACAGCAGCAACAGC---AG............................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AG------CAG---------CAACAGCAGCAACAGC---AGC---A.......................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................ATCAACA------------------------GCAGCAG------CAG---------CAACA............................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ACAGCAGCAACAGC---AGC---AG---CA------------------------------GCAACA.............................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CAACA------------------------GCAGCAG------CAG---------CAAC.............................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................ATCAACA------------------------GCAGCAG------CAG---------CAAC.............................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................G---------CAACAGCAGCAACAGC---AGC---AG---CA------------------------------GC.................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ACA------------------------GCAGCAG------CAG---------CAACAGCAGCA......................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................CAG------CAG---------CAACAGCAGCAACAGC---AGC---........................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................AG------CAG---------CAACAGCAGCAACAGC---AGC---........................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GCAG------CAG---------CAACAGCAGCAACAGC---AGC---A.......................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AACAGCAGCAACAGC---AGC---AG---CA------------------------------...................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GCAGCAACAGC---AGC---AG---CA------------------------------GCAAC..............................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GCAG------CAG---------CAACAGCAGCAACAGC---AGC---AG---...................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GCAGCAACAGC---AGC---AG---CA------------------------------G..................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CAGCAGCAACAGC---AGC---AG---CA------------------------------GC.................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CAACAGCAGCAACAGC---AGC---AG---...................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AGCAACAGC---AGC---AG---CA------------------------------GCAACAA............................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AG---------CAACAGCAGCAACAGC---AGC---AG---CA------------------------------GCA................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAGCAACAGC---AGC---AG---CA------------------------------GCAAC..............................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................ATCAACA------------------------GCAGCAG------CAG---------CA...............................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGACCAAATT-GCG----------AACCCCCTTTGCCAT----AC--AGGAGATCCTCGGCCTG---GGCGTCGGTGTCGG-----------------------------TGTCGGCGTCGG-TGCCTACCAGCA------------------------GCAACAG------CAGCAACAACAAC---------------AGCAGCAGCAA---CA---A------------------CAGCAGCAACAGCAACAACAGCAGCAGCACCAACCACAACAATCATCGCAGGCAGCTGCCGCTGCCACGCCCAGC-----GCCATTGAGGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................CAAC---------------AGCAGCAGCAA---CA---A------------------CA.........................................................................................	20	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................................................................ACAAC---------------AGCAGCAGCAA---CA---..............................................................................................................	18	20	0.10	2	0	0	0	0	2	0
.................................................................................................................................................................................................................................................CAGCAACAGCAACAACAGCAG...................................................................	21	20	0.10	2	0	0	0	0	2	0
.....................................................................................................................................................................G------CAGCAACAACAAC---------------AGCAGC...........................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................C---------------AGCAGCAGCAA---CA---A------------------CAGCAGC....................................................................................	22	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................AGCAGCAGCAA---CA---A------------------CAGCAGC....................................................................................	21	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................GCAACAACAAC---------------AGCAGCAGCAA---CA---..............................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................CAGCAGCAACAGCAACAACAGCAGC..................................................................	25	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................CAGCA------------------------GCAACAG------CAGCAACAAC...................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................CAACAG------CAGCAACAACAAC---------------AGCAGCA..........................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................GCA------------------------GCAACAG------CAGCAACAACAAC---------------AGCAG............................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................GCAACAGCAACAACAGCA....................................................................	18	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGCAGC...............................................................	22	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................AAC---------------AGCAGCAGCAA---CA---A------------------CAGCAGCA...................................................................................	25	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................AC---------------AGCAGCAGCAA---CA---A------------------CAGCAGCA...................................................................................	24	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................ACAACAAC---------------AGCAGCAGCAA---CA---A------------------CAGC.......................................................................................	26	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................CAA---CA---A------------------CAGCAGCAACAGCA.............................................................................	20	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................A---CA---A------------------CAGCAGCAACAGCA.............................................................................	18	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................AGCAACAACAAC---------------AGCAGCAGCAA---CA---A------------------C..........................................................................................	27	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................C---------------AGCAGCAGCAA---CA---A------------------CAGC.......................................................................................	19	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................GCAGCAGCAA---CA---A------------------CAGCAGCAACAGC..............................................................................	26	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AGCAACAGCAACAACAGCAGCAGCA..............................................................	25	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................GCAGCAACAGCAACAACAGCAGCAGC...............................................................	26	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................AGCAACAGCAACAACAGCAGC..................................................................	21	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................AGCAACAGCAACAACAGCAG...................................................................	20	20	0.05	1	0	0	0	0	1	0

droGri2

CCACCACCAG-CAC----------CACCCGTACAA--------CC--AGCAG-----CA----------------------------------------------------------------------------------GCATCTGCATCACCTGCAGCAGCTACAGCAG---CAGCAGCAGC---------------AGCAGC---AA---CAACAA------------------CAGCAGCAACAGCAACAGCAACAACAGCAGCAGCAACA---------GTTGGC-TGAG----------------C-----AG----CAGGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................GCAGCAGC---------------AGCAGC---AA---CAACA..............................................................................................................	21	20	0.10	2	2	0
............................................................................................................................................................................................................................................................ACAGCAACAACAGCAGCAGCAACA---------............................................	24	20	0.05	1	1	0
.........................................................................................................................................................................................................GCAGC---AA---CAACAA------------------CAGCAGCAACA................................................................................	24	20	0.05	1	1	0
.................................................................................................................................................................................................................AA---CAACAA------------------CAGCAGCAACAGCAACAGCA.......................................................................	28	20	0.05	1	1	0
...........................................................................................................................................................................................................................................................AACAGCAACAACAGCAGCA...........................................................	19	20	0.05	1	0	1

droAna3

CCACCAAAAT-GCG----------AACCCCGTTCGCCAT----CC--AGGAGATCCTCGGCCTG---GG------------------------------------------------------CGCCTACCAGCA------------------------GCAG-----------------GCGGC---------------GGCC------------------------------------------GCAGCAGCCGTG----------------------------------------GCCGCCACGC-----------CCTCCGAGGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

CGCATGCCCATGGCCAGGCAGCAGC---------------------------ATCCATTGCCTC---CG----------------------------------------------------------AATCATCA---------------------GCAGCTGCAG------------------CAGCAGCAACAGC------------A------ACAGCATCAGCAGCAACA------------GCACCATCAGTTGCAGCATCA---GCA---------------GCC----ATCG------CAC-CATCACCACAGCCAGACGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCACCGGCAC-GGG----------CACCAGCACGGGCAC-----------AGATCACCA------------------------------------GGCGGTGCATC------------CACC-CAGCTGCCACCA------------------------GCAACAG------CAG---------CAGCAGCAACAACAGC---AGC---AG---CA------------------------------GCATCATCACGCCCACCCGCA---------------------------------------------------TCCGCACTCGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCCCCAGCAG-CAG----------CACCAGCAGCACTTG--G--CCCAGCAGCAGCTC---T--TCG----------CCGCCCAGCA------------------------GTTGCAGCTGC------ACCACCA---------------------GCAACTGCAGCAGCAG---CAAC------------AACAGC---AGCAGC---AA---CAGCAG---------CAGCA------------ACAGCAGCAGCAGCAACAACA---------------------------------------------------GCAGCAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCATCCGAAT--------------CACCTGCATCAGCAT----CA--GCAACATCCATTGCCGC-------------------------------------------------------------------A---------------------------GCAGCAACAGCAG---CAGGCG---C------AACAGC---AGCAGC---AG---CA------------GG------CGCATCAGCAGCAGCAGCAGCA---------------GCA---------GGCGGC-ACAGCAGCAGCCACACC---A-----GCCACATCATC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCACCCGCAT-CCG----------CACCCGCATCCGCAT--C--CCCAGGCGCATCCC------TCG----------CTACCCGCCA-----------------------------------------TGCAGCA---GCACCACC---------TGCAACAGCAGCAG---------------CAGCAGCAACAACAGC---AGC---AG---CAAC---------AGCAACA------------GCAGCAGCAGGAGCAACAGCA---------------------------------------------------TCTGCAGGAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCACCCGCAC-CCG----------CATCCGCATCCGCAT--C--CCCAGGCGCATCCCTCCCTG---CC-------------CGCCA-----------------------------------------TGCAGCA---TCACCACC---------TGCAGCAGCAGCAGCAA---CAGC------------AACAGC---AGCAGC---AG---CAGCAA---------C---A------ACAGCAGCAGCAGCAGGAGCAACAGCA---------------------------------------------------TCTGCAGGAGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCATGGAGCT-GCT----------CACGCCCTTCC------------TGAACACCCA------------------------------------------------------------------CGCCTACTCGCA------------------------GCAGCAG------CAACACCAGCAGC---------------AGCAGCAGCAA---CATCAG------CAGC------AACACCAGCAGCAACATCA---------GCA------------------ACATCCTCCTGCTCCGGCCACGCC--GC-----TC--CATCGGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CTATGACGAT-GGC----------CGCCTGTTATGCCAA----CT--ACGACATGTC-GTCC--CTG----------TCGCACGGCA-----------------------TGTCGGCCCTGTCCGCC---CTACA------------------------GCAGCAGCAGCAG---CAGC------------AACAAC---AGCAGC---AG---CAGCAA---------CAGCAGCAGCAGCA---GCACAG---------TCAGAC-----------------------------------------G----------CAGCAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCCGCGGCAG-GAG----------CACCCCCTGCCCCGCAGTGCC--AAACGCTCCACAGCCCA-------------CAGC-----A------------------------------------CGCCTCCCAGCA------------------------GCAGCAG------CAGCAACAACAGC---------------AGCAGCAGCAA---CA---C------------------CAGCAGCAGCAACAACAGCAGCAGCAGCATCCCCAG--------------------------------------C-----AGCAACGCGGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCATCCC..........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................CAGCAGCAGCAGCATCCCCAG--------------------------------------C-----AGCAA......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGC-----A------------------------------------CGCCTCCCAGCA------------------------GCAGCA....................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GCAACAACAGC---------------AGCAGCAGC........................................................................................................................	20	20	0.75	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CAGCAACAACAGC---------------AGCAGCAG.........................................................................................................................	21	20	0.70	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0
....................................................................................................................................................................................................................................................CAGCAACAACAGCAGCAGCAG................................................................	21	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	6	0	0	0
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..................................................................................................................................................................................CAACAGC---------------AGCAGCAGCAA---CA---..............................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................G------CAGCAACAACAGC---------------AGCAG............................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGCAGCAA---CA---C------------------CAGCAGCA...................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GCAGCAACAACAGCAGCAGCAG................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................G------CAGCAACAACAGC---------------AGCAGC...........................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................CAG------CAGCAACAACAGC---------------AGCAGCA..........................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GCAGCAG------CAGCAACAACAGC---------------A................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CCTCCAAAATTGAG----------CTCC--TAACCGCGC--C--CACAATTGC--------------CA--------T-----------------ATCGA-----------------------CGCC--CTCGCC---------------------GCAGCAGCAACACCAA---CAGCAGCAGC---------------AGCAGC---AG---CA---------------ACT---ATATCAGCAACATCAACAGCA-------------------------------------GCAGCAGCAACATTACGG-----TCCACCACCGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................TCC--TAACCGCGC--C--CACAATTGC--------------CA--------T-----------------ATCGA-----------------------..............................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GCAGCAACACCAA---CAGCAGCAGC---------------.................................................................................................................................	23	10	1.00	10	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0
..TCCAAAATTGAG----------CTCC--TAACCGCGC--C--.............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AACACCAA---CAGCAGCAGC---------------A................................................................................................................................	19	16	0.94	15	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AACACCAA---CAGCAGCAGC---------------AGCA.............................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................CAACACCAA---CAGCAGCAGC---------------AGC..............................................................................................................................	22	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................AGCAGCAACACCAA---CAGCAGCAGC---------------T................................................................................................................................	25	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................CACCAA---CAGCAGCAGC---------------AGCA.............................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................ACAGCA-------------------------------------GCAGCAGCAAC.......................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CCTCAAGAAG-GAG----------CCTCCCCTGC--------------------------------------------AGC-----AGGCCACCATTGGGCAGATCACCCTGACGGCCATGTCCACG---GCGCA------------------------GCAGCAGCAGCAA---CAGCAGCAGC---------------AGCAGC---AACAACAACAA------CAGC------AACAGCAGCAGCAACAACAGCAGCAGCAGCAACCCCAG----------------------------C--------AG-----ACTACCGATGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................AACAA------CAGC------AACAGCAGCAGC.................................................................................	21	20	0.05	1	0	0	0	1
.......................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCA..............................................................	20	20	0.05	1	0	0	1	0
.....................................................................................................................................................................................................................................C------AACAGCAGCAGCAACAACA..........................................................................	20	20	0.05	1	0	0	1	0
........................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCAAC............................................................	21	20	0.05	1	0	1	0	0

droYak3

CCATGGAGCT-GCT----------CACGCCCTTCC------------TGAACACCCA------------------------------------------------------------------CGCCCACTCGCAGCAGCTGCAAC---------TGCAACACCAGCAGCAG---CTGC------------AAC---AGCAGCAGC---A------AC---------AGCAACA------GCAGCAACAGCAGCAGCAGCATCAGCAGCACCAG----------------------------CAACATC-------------CTGCTGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................GCAGCATCAGCAGCACCAG----------------------------C..........................	20	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GCAGC---A------AC---------AGCAACA------GCAGCA...................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAGCATC..................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AACA------GCAGCAACAGCAGCAGCAGC.....................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGC---A------AC---------AGCAACA------GCAGCAA..................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCA....................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GCAGC---A------AC---------AGCAACA------GCAGCAACA................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAGC.....................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AACAGCAGCAGCAGCATCAG................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AACA------GCAGCAACAGCAGCAGCAG......................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAGCAGC---A------AC---------AGCAACA------GCAGCA...................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGC---A------AC---------AGCAACA------GCAGCAACAG...............................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CCCGCGGCAG-GAG----------CACCCCCTGCCCCGCAATGCC--AAACGCTCCACAGCCCA-------------CAGC-----A------------------------------------CGCCTCCCAGCA------------------------ACAGCAG------CAG---------CAGCAGCAACAACAGCAGCAGC---------AGC---------AGCAACA------CCAGCAGCAGCAGCAACAGCAGCAGCATCCCCAG--------------------------------------C-----AGCAACGCGGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................CCACAGCCCA-------------CAGC-----A------------------------------------CGCCTCCCA.....................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.............................CCTGCCCCGCAATGCC--AAA.......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................AGCATCCCCAG--------------------------------------C-----AGCAAC.....	18	2	0.50	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCATCCC..........................................................	22	2	0.50	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAGCATCC...........................................................	22	3	0.33	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................AGCAGC---------AGC---------AGCAACA------CCAGCAGCA................................................................................	25	10	0.10	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................CA------CCAGCAGCAGCAGCAACAG......................................................................	21	13	0.08	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................AACA------CCAGCAGCAGCAGCA..........................................................................	19	20	0.05	1	1	0	0	0	0	0	0
.................................................................................................................................................................AGCAG------CAG---------CAGCAGCAACAACAGCAGCA.............................................................................................................................	28	20	0.05	1	1	0	0	0	0	0	0
..................................................................................................................................CAGCA------------------------ACAGCAG------CAG---------CAGCA............................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0
............................................................................................................................................................................................AGCAACAACAGCAGCAGC---------AGC---------AGCA..................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................CCAGCAGCAGCAGCAACAGC.....................................................................	20	20	0.05	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................GCAGCAACAACAGCAGCAGC---------AGC---------......................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0
...................................................................................................................................AGCA------------------------ACAGCAG------CAG---------CAGCA............................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
................................................................................................................................................................................................ACAACAGCAGCAGC---------AGC---------AGC...................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0
..................................................................................................................................CAGCA------------------------ACAGCAG------CAG---------CAGCAGCAACA......................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................................................................................................G------CAG---------CAGCAGCAACAACAGCAGC..............................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................GCAGCAACAACAGCAGCAGC---------AGC---------AG....................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0
.....................................................................................................................................................................G------CAG---------CAGCAGCAACAACAGCAGCA.............................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................GCAACAACAGCAGCAGC---------AGC---------A.....................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAGCAGCAGCA..............................................................	25	20	0.05	1	0	0	0	1	0	0	0

-10.2	-10.2	-9.6	-9.6

dps_2573

XL_group1a:8045405-8045458 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads