dps_2569

CDS [Dpse\GA23076-cds]; exon [dpse_GLEANR_11579:4]; CDS [Dpse\GA23076-cds]; exon [dpse_GLEANR_11579:5]; intron [Dpse\GA23076-in]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+
(CAA)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGAGGCAACAGCAACAGCAACAGCGACAGCAGAAGCAACAGAAATTGCAAGTAGCACAGCACCAACGGCAACGGCAACGGCAACGGCAACAGCAACAGCACCAATTAGCACTCCAACAGCACCAACAGCAAGAACGGTTTATGATAGCACCACAACAAAACCACCAACAACAACAATTTCAACAATAGAACCAACAACAACAACAACAACAAGAACAACAACAGAAAGCACAACTACAGAAAGCACAACAGCAGAAAGCAATCCTAGCCACAAGACACTTAAAACATTTACTTTGACAGATGAGCAGCCGCAGGAACAGCCGCACCAGGACCCGGAGGAGGCGACCCCC *****************************************************************************************************************************************************************************************************...........................................((......))....*******************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	M062 head	V112 male body	GSM343916 embryo	GSM444067 head
.............................................................................................................................................................................................................................................AGAAAGCACGACAACTGAAAGC..........................................................................................	22	3	3	2.00	6	6	0	0	0	0	0
.............................................................................................................................................................................................................................................AGAAAGCACAACAGCAGAA.............................................................................................	19	0	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................AGAAAGCACGACAACTGAAAGC.........................................................................................................	22	3	3	2.00	6	6	0	0	0	0	0
..........GCAACAGCAACAGCGACAGCAGAAGC.........................................................................................................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................GCACCAGGACCCGGAGGAGGC.......	21	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................TTAAACAATACAACCAGCAACAACAAC.................................................................................................................................................	27	3	1	1.00	1	0	0	1	0	0	0
.............................................TTCAAGTAGCACAGCACCAACGGCAAC.....................................................................................................................................................................................................................................................................................	27	1	1	1.00	1	0	1	0	0	0	0
..............................................GCAAGTAGCACAGCACCAACGG.........................................................................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................CAACTACAGAAAGCACAACAGCAGA..............................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................GAAAGCACGACAACTGAAAGC..........................................................................................	21	3	6	0.83	5	5	0	0	0	0	0
...............................................................................................................................................................................................................................GAAAGCACGACAACTGAAAGC.........................................................................................................	21	3	6	0.83	5	5	0	0	0	0	0
..............................................................................................................................................................................................................................................GAAAGCACAACAGCAGAAG............................................................................................	19	1	2	0.50	1	1	0	0	0	0	0
....................................................................................................................................................................................AACAATACAACCAGCAACAACAAC.................................................................................................................................................	24	2	4	0.25	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................GAAGAAAGCACAACAGCAGA..............................................................................................	20	2	7	0.14	1	1	0	0	0	0	0
......AACAGCAACAGCAACAGCGACA.................................................................................................................................................................................................................................................................................................................................	22	0	10	0.10	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................AACAGCAAAGAGCAATGCTAG..................................................................................	21	3	11	0.09	1	0	0	0	1	0	0
.......................................................................................................................................................................................................ACAACAACAACAAGAACAACAACA..............................................................................................................................	24	0	11	0.09	1	1	0	0	0	0	0
....GCAACAGCAACAGCAACAGCGAC..................................................................................................................................................................................................................................................................................................................................	23	0	13	0.08	1	0	1	0	0	0	0
.................AAACAGCGACAGGAGAAGC.........................................................................................................................................................................................................................................................................................................................	19	2	16	0.06	1	0	0	0	0	1	0
...............................................................AACGGCAACGGCAACGGCAACGGC......................................................................................................................................................................................................................................................................	24	0	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................GCAGAAGGTTATCCTAGCC................................................................................	19	3	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................AACAACAACAAGAACAACA.................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
..............................................................CAACGGCAACGGCAACGGC............................................................................................................................................................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0

TCTCCGTTGTCGTTGTCGTTGTCGCTGTCGTCTTCGTTGTCTTTAACGTTCATCGTGTCGTGGTTGCCGTTGCCGTTGCCGTTGCCGTTGTCGTTGTCGTGGTTAATCGTGAGGTTGTCGTGGTTGTCGTTCTTGCCAAATACTATCGTGGTGTTGTTTTGGTGGTTGTTGTTGTTAAAGTTGTTATCTTGGTTGTTGTTGTTGTTGTTGTTCTTGTTGTTGTCTTTCGTGTTGATGTCTTTCGTGTTGTCGTCTTTCGTTAGGATCGGTGTTCTGTGAATTTTGTAAATGAAACTGTCTACTCGTCGGCGTCCTTGTCGGCGTGGTCCTGGGCCTCCTCCGCTGGGGG *******************************************************************************************...........................................((......))....*****************************************************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body	GSM343916 embryo	M022 male body
.............................................................................................................................................................................................................................................................CTTTCGTGAGGAGCGGTGT.............................................................................	19	2	2	2.00	4	0	4	0	0
..........................................................................................TCGTTGTCGTGGTTAATCGT...............................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0
...............................................................................................................................................................TGGTGGGTGTTGTTGGTAAA..........................................................................................................................................................................	20	2	1	1.00	1	1	0	0	0
..................................................................................................................TTGTCGTGGTTGTCGTTCTTGCCAAAT................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................TGTCTTTCGTGCTGGCGTCT..............................................................................................	20	2	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................CTTTCGTGAGGAGCGGTG..............................................................................	18	2	7	0.57	4	0	4	0	0
............................................................................................................................................................................................................................................................TCTTGCGTGAGGAGCGGTGTTC...........................................................................	22	3	2	0.50	1	1	0	0	0
...................................................................................................................................................GTAGGGTTGTTTTGGTGGT.......................................................................................................................................................................................	19	2	3	0.33	1	1	0	0	0
.............................................................................................................................................................TGTGGTGGGTGTTGTTGGTAAA..........................................................................................................................................................................	22	3	4	0.25	1	0	1	0	0
............................................................................................................................................................................................................................................................TCTTGCGTTAGGAGCGGTG..............................................................................	19	2	4	0.25	1	0	1	0	0
.............................................................................................................................................................................................................................................................CTTTCGTGAGGAGCGGTGTGC...........................................................................	21	3	5	0.20	1	0	1	0	0
............................................................................................................................................................................................................................................................TCTTTCGTGAGGAGCGGTG..............................................................................	19	2	5	0.20	1	0	1	0	0
.............................................................................................................................................................................................................................................TCTTTCGTGCTGTTGACTTTC...........................................................................................	21	3	7	0.14	1	1	0	0	0
..............................................................................................................................................................................................................................TCTTTCGTGCTGTTGACTTTC..........................................................................................................	21	3	7	0.14	1	1	0	0	0
................................................................................................................................................................................................................................................TTCGTGTTGTCTTCTTTTGT.........................................................................................	20	2	9	0.11	1	1	0	0	0
....................................................................................................................................................TGGTGTTGTTGTGGTGGTT......................................................................................................................................................................................	19	1	13	0.08	1	0	1	0	0
........................................................................................................................................................GTTGTTTTGGTGGTAATTG..................................................................................................................................................................................	19	2	13	0.08	1	1	0	0	0
...........................................................................................................................................................................................CTTGGTAGTTGTTGTTGTTG..............................................................................................................................................	20	1	15	0.07	1	0	1	0	0
..........CGTTGTCGTTGTCGCTGTCG...............................................................................................................................................................................................................................................................................................................................	20	0	18	0.06	1	0	0	0	1
...................................................................................................................................................GTCGGGTTGTTTTGGTGGGT......................................................................................................................................................................................	20	3	20	0.05	1	0	0	1	0
.............................................................................................................................................................................................................................................................CTTTCGTGAGGAGCGGTGTG............................................................................	20	3	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
dp5	XL_group1a:7889505-7889853 +	dps_2569	AGAGG-----------------CAACAGCAACAGCAACAGCG---------------ACAGCAGAAGCAACAGAAATTGCAAGTAGCACAG---CACC---A-------------------------------------------A------C---GGC---AACGGCAACGGCAAC---------------------------------------------------------------------G------GCAACAGCAACAGCACCAAT------TAGCACTCCAACAGCACCAACAGCAAGAACGG----------------------------------------TTTATGATAGCAC------------------CACA-------------------------------------------------------------------------------------------------------------------ACAAAACCA--------------------------------C---CAACAACAACAATTTCAAC------------AATAGAACCAACAACAACAACAACA------AC--AAGA------------ACAACAACAGAAAGCACAAC-------------------------------------------------------------------TAC----AGAAAGCA------CAACAGCAGAAAGCAATCCTAGCCA----------CAAGACACTTAAAACAT------TT---------------ACTTTGACAGATGAGCA---GCCGC------AGG---AA--------CA-GCCG---------CAC--------------------------------------------------------------------------------------------------------------------------------------------C-AGGACCCGGAGGAGGCGACCC--------------------------------------------CC
droPer2	scaffold_15:243974-244325 +		AGAGG-----------------CAACAGCAACAGCGACAGCG---------------ACAGCAGAAGCAACAGAAATTGCAAGTAGCACAG---CACC---A-------------------------------------------A------C---GGC---AACGGCAACAGCAAC---------------------------------------------------------------------A------GCAACAGCTACAGCACCAAT------TAGCACTCCAACAACACCAACAGCAAGAACGG----------------------------------------TTTATGATAGCAC------------------CACA------------------------------ACAATACCA---C---------------CAACAACAACAACAA----------------------------------------------------CC-----------------------------A---CAACAACAACAATTTCAAC------------AATAGAACCAACA------ACAACAAC-----------------------------AACAGAAAGCACAAC-------------------------------------------------------------------TAC----AGAAAGCA------CAACAGCAGAAAGCAATCCTAGCCA----------CAAGACACTTAAAACAT------TT---------------ACTTTGACAGATGAGCA---GCCGC------AGG---AA--------CA-GCCG---------CAC--------------------------------------------------------------------------------------------------------------------------------------------C-AGGACCCGGAGGAGGCGACCC--------------------------------------------CC
droWil2	scf2_1100000003625:647-951 +		GGCAG-----------------CAACAACAACAGCAACAACA---------------ACTGCAGCAGCAACAACAACAGCAG---CAACAA---CAAC---A-------------------------------------------G------C---AGC---AGCAACAACAGCATCAGCAACAGC------------------------------------------AACAGCAGCAACGAATGCA---------------------------------------ACAGCAACAGCAACAGCAACA-------------------------------------------------------------------GCAACAGCAGCAACAATTGCAGCAACAACAGCAACAGCAGCAACAATGGCAGCAA---------------CAACAACAGCAA----------------------------------------CAACAACTGCAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACAACAGCAGCAGCAACA------AC--------------------------------------------------------------------------------------------A------GCAAC---AGGAACA--------------ACAACAG---CAGC------AGCAA--CA-A---------CAACAACAGC---------A-----GC------AGCA---ACT------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------
droVir3	scaffold_12970:6485094-6485408 +		G-CAA--------------------CAGCAACAGCAACAACG---------------ACAGCAACAGCAGCAATTGTTGGCAGCAGCACAG---TAGC---A-------------------------------------------G---CAAC---A------GC---------AGCTGCGGCAGC------------------------------------------------------------A------ACAGATGCTGC-------------------------------------------------------------------------------------------------------------------------------------TGCAGCCGCCGCCGCGCCTTCGTCACCGGCAC---------------CGACAACAACAACAACAACTAG----------------------------------------CACAACTAGCACACC--------------------------AACAACTAC---------------------------------AACAACAACAACA------AC--AACA------------ACAACAATAGAAAGCACACCAAC----------------------------------------------------------------AAC----AACAACTA------CAACAACACCAAGCAATCCA-ACCACAAGCCA---C---ACATTTAAAACAT------TT---------------ACTTCAACAGATGAGCA---GCCGC------CAG---CA--------TC-GCTG---------CA----C---------A-----------------ACA------------------------------------------------------------------------------------------------------------------------------GCA--------------------------------------------AC
droMoj3	scaffold_6496:6406723-6407063 +		AGCAG-----------------CAGCAGCAACAGCAGCAGCA---------------ACAGCAGCAGCAACAGCAGCAGCGA---CAGCAGCAGC------A-------------------------------------------G------C---AGC---GACAACAACAGCAGCAGCAACAGC------------------------------------------------------------------------AGCAACAGCAGCGAC------------------AGCAGCAACAG-------------------------------------------------------------------CAGCGACAGCAGCAACA----------------------------------------------------------------------------------------------GCAATAGCAGCAACAGCAGCAACAGGAGCAGCAGCAACAGC-----------------------------------------------AGCAGCGACAGCAGCAGCAGCAGCGACAGCAACAGCAGCAGC--AACAGCAGCAATAGCA----------------------------GCAGCAGCAACAGCAATAGCAGCAACAGCAACA-------------------------------------------G----------------------CAGC------------C---GCAGCAAAAGCAG------CC---------------GCAGCAACAG-----C---------AG---CCGC------AGCAGCAACAT------CAACAGCAG--------------------CAACAGCAGCAAGAGCA------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------
droGri2	scaffold_15126:1914025-1914360 -		AGGAG-----------------CAGCAACAACAGGAGCAACG---------------GCAGCAAGAGCAACGGCAAAAGCAA---CAGCACGAGCAAG---AACAGCAACAGCA-------------------------------A------C---AGCTGGAGCAACAACAACAACAGCAGCTGCATCAGAAACAGCAGG-----------------------------------------------------------------------------------------------------------------------------AGCAACAACGACCGGAGCAACGGCAA---------------------------------------------------------------------------------------------------------------------------------------AA------------GCAAGAGCA-----------------------------------------------AGAACAGC---AACAGCAACAGCAACAGCTGGAGCAACAACTACAACAACAGC--AGCA------------GCAGCAACAGGAGGAGCAACGGCAAA-------ATCAACAGCAAGAGCAAGAACAGCAACAGCAA-----------------------------------------------------------------------------------CAGCTGGAGCAA------CA---------------ACAACAAC-----------------AGCAGCAGCAACAA--------CA-G---------CAGCAG---CAG--------------CAAC---AACAGGA------------------------------------------------------------------------------------------------------------------------------GGA--------------------------------------------GC
droAna3	scaffold_13334:718229-718559 -	dan_2170	AGAAG-----------------CAGCAGCAGAAGCAGCAACATCAATTGATTTCGGTGATACTTCAACAGAAGATATTGCA---------CAAAAAGC---A------------AATAATGCACAA-------------------A------C---AGA---ACCAGAAACTGCAAC---------------------------------------------------------------------A------ACTATTGCACCAGCAATTAG------TAGCACAACTTTCA-------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAACAATAGATAG---------------------------------------------C------------------ACAACAACAACAA---CAATTACTACAACAA---C------------ACAACAACCAACA------ACAACAACT---AC---------------------------------------------------------------------------------------------TAGAA----------CAACA------ACAACAGCTACAACACAAAGCAATCCCAGCCC----------C---ACACTTAAAACAT------TT---------------ACTTCAACAGATGAGCA---GCA---------------------------------------------AC---------AGCAGC--------AACAAGAGCA------------------------------------------------------------------------------------------------------------------------------G---------------GCATC------------AGGATCCGATTCG
droBip1	scf7180000395553:7643-8004 -		AAATC-----------------CAGTATCAC---C----------------------------------------------------GCTCCAGCAAC---AACAGCAACACCA-------------------------------A------C---AGCAGCAGCAGCAACAGCAACAGCAGCAGCAACAGCAACAGCAGCAGGCACAGCAACAGCAGCAGGCACAGCAACAGCAGCAG---GCACAGCAGCCGCAACAGCACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------CCACAACAACAACAACAACAAC-------------------AGCAGCAATCACAACAACATAAGCA--------------------------------A---CAACAGCAGCAACTTCTCC---------AACAAAAGCAACAGCA------------------------------------------------------------------GCAGCAGCAACAGCAACATCAGGCCCTGCAACAGCAACA-------------------------------------TCAAGC----------------------------CACACC---ACAGCAATCGCAGCCACATCA------GCAACTTCAGGCTCA--------------TCAGCAG---CAA--------------CA-TCTC---CACCAGCAGCAGC---------A-----GC------AGCAA------------------------------------------------------------------------------------------------------------------------------CATCT--------------------------------------------CC
droKik1	scf7180000302685:196286-196609 +		AGCAT-----------------TTACAGCAGCAGCAGCATTT---------------ACAGCAGCAGCAACAACAGCATCTA---CAGCAGCAGC------A-------------------------------------------A------C---AAC---AGCATTTACAGCAGCAGCAGCAGC---------------------------------------------------AGCATTTACA---------------------------------------GCAGCAGCAGCAACAGCATCT-------------------------------------------------------------------ACAGCAGCAGCA-------------------------------------------------------------------------------------------------------------GCAACATCACCAGCAGCAACAACAAC--------------------------------------AGCATCTACAGCAGCAACAGCAGCAGCTGCAGCAACATCTACAGCAGCAAC--AGCAGCAGCATCATCT----------------------------ACAGCAGCAGCAGCATCTACAGCAACAGCAGCA----------------------------------------------TCTACA-------------------------------------------------------------GCAGC---AGC-----------AGCAGCAGCAGCA------------T---CTA--CA-GCAG---CAGCAGCAGCAGC---------A-----GC------AGCAT------------------------------------------------------------------------------------------------------------------------------CATCT--------------------------------------------CC
droFic1	scf7180000454077:1466111-1466411 -		AATTG-----------------CAATTGCAGCAGCAACAAGC---------------A---------CAACAGATATTGCAAGTAGCTCAG---CACAACCA-------------------------------------------C------C---ACC---ACCGGCAACAGCAAC---------------------------------------------------------------------A------ACAATTGCACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------CAGCAACAGCAACAACAATTAG---------------------------------------------CACCACCACCACCTCCTCCACAACAACA---A---CAACAACAACAAGTAC---------------ACAACAACCACCA------ACAACAAC--------------------------------------------------AA--------------------------------------------------------------CAACA------ACAACAAGCAGAACAGAAAGCAATCCCAGTCC----------C---ACACTTAAAACAT------TT---------------CATTTAACAGATGAGCA---GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGAAACGGAAACGGAAACGGCAAATCAACCAGAAACGGATGGC
droEle1	scf7180000490546:726137-726431 -		AGCAA-----------------CAG---AAATTGCAATTGCA---------------ACAGCAGCAGCAACAGAAATTGCAAGTAGTCTAG---CACC---G-------------------------------------------T------T---ATC---ACCGGCAACAGCAGC---------------------------------------------------------------------A------ACAATTGCACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------CTGCAACTGCAACAACAATAAGCACCACCACCTCCACCACC-ACCACCAC-----------------C------------------ACAACAACAAGAA---CAACAGCAACAAGTACACC------------ACAACCACCACCA------ACAAC-----------------------------------------------------AA--------------------------------------------------------------CAACA------ACAACAAGCAGAACAGATAGCAATCCCAGCCC----------C---ACACTTAAAACAT------TT---------------CATTTAACAGATGAGCA---GCA---------------------------------------------GC---------A-----------------------------------------------------------------------------------------------------------------------------------------------------ACAGGAAGTGGAAACGGAAA------------------------GT
droRho1	scf7180000779985:553001-553352 -		AGCAG-----------------CAGCAGCAGCAGCAACATCT---------------GCAGCAGCAGCAACAG---TTGCAACTACAGCAG---CAGC---A-------------------------------------------G------C---AGC---AGCAGCAACAGCAGCTGCAACAGC---------------------------------------------------------------------------AACACT-------------ATCATAACTACAGCGGCAATAGCAACAATTACAAAATGCATTTAACTACCACATCGAGCAATTCAACGGCATCT----------AATGCCAACAATAATAACAACA----------------------------------------------------------------------------------------------ACAACACCACCAACAACAACAACACAAGCAGCAACA--------------------------------------------------------------------------------ACAACAACA---AC---------------------------------------------------------ACGAGCAACACAAATGGCAGCAGCAACA------ACACGAGCGGCAACAAC----AACAGCAA------CAACA---------------------------------------------------------------------------------------------------------ACAACAACAG------------------TAG---TGGCAACAACAACAGC--------AA------CACAGATCAAAATACACCA----------------------------------------------------------------------------------------------------------CCA--------------------------------------------AC
droBia1	scf7180000301760:2681355-2681671 -		AAGCCAAAGTCAACCAAAGCAGCAGGCGAAGGAGGAACAGCA---------------GCAGCAGCAGCAACAG---CAGCAA------CAG---CAGC---A-------------------------------------------A------CAGCAGCAGGAATTGCAACAGCAACTTCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC-----------------------------------------------------------------ATAGCCAACAGCAACAACTGAATCATCAACAACAGCAGCAA----------------------TTTCAGCAGCAGCAACAGCAACAGAAGCAGCAGCA----------------------------------------------------------------------------------------------------------------ACAGCAACAGAAGGAACAACATC-------------------AGCAACCCAATCAACAGCAGCAACA---GCAGCAGGAACTGCAACA----------------G----------------------------------------------CAAATGCAG------CAATTTCAGCAGC---AGG-----------AACA---GCAAC------AGA---AG--------CA-AGAGCAACAG---A-----------------------------AGCAAGA------------------------------------------------------------------------------------------------------------------------------GCA--------------------------------------------GC
droTak1	scf7180000415872:1088034-1088300 +		G-CAA--------------------CTGAAATTGCACTCGCC---------------GTTGCAACAGCAACAGATATTGCAAGTAGCTCAG---CACCACCT-------------------------------------------T------T---ACC---ACCGGCAACAGCAAC---------------------------------------------------------------------A------ACAATAGCACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------CTGCAACTTCAACAACAATTAG---------------------------------------------CACCACCAGC---------ACAACAACA---A---CAGCAACAACAAGTACAAC------------ACAACAACCACCA------ACAGCAACA-------------------------------------------------------------------------------------------------------------------------------ACAAGCAGTACAGATAGCAATCCCAGCCC----------C---ACACTTAAAACAT------TT---------------CATTTAACAGATGAGCA---GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGACGAGGAAACGGAGA------------------------GC
droEug1	scf7180000409065:237963-238247 -		G-CAA--------------------CAGAAATTGCAATTGCA---------------CTTGCAACGGCAACAGAAATTGCAAGTAGCTCAG---CACCACCA-------------------------------------------A------T---AGC---ACCGGCAACAGCAAC---------------------------------------------------------------------A------ACAATAGCACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------CAGCAACAG------CAATTAG---------------------------------------------CACCAACAAC---------ACCACCACA---ACAGCAACAACAACAAGTACAAC------------ACAACAACCACCA------CCAAC-----------------------------------------------------AA--------------------------------------------------------------CAACA------ACAACAAGCAGAACAGAAAGCAATCCCAGCCC----------C---ACACTTAAAACAT------TT---------------CATTTAACAGATGAGCA---ACA---------------------------------------------GC---------A-----------------------------------------------------------------------------------------------------------------------------------------------------ACAGGAAACGGAAACGGAGAC------------CGGAACCGAAAGT
dm3	chrX:10512513-10512885 -		AGAAG-----------------CAGAAGCAACAACAACAGCA---------------GCAGCAGAGGCAGA--------------GCAAGG---CGCC---A------------TCTGAAGCGGAATCGGAGGCAGACCGCCCCGGCAGCAAC---A---------------GCAGC---------------------------------------------------------------------------------AGCACCAGCAACAACAAGCATTCGCGTCGCAGCAGCGCCGGCAGCAACAACAACAAATAGCAAAAACTT-----------------AGCAGCGTTCGGCAAAGCGCAGCAAAAGCAACAAAGGCA-------------------------------------------------------------------------------------------------ACACTAAAACTAACAGCAGCAACACCAAT--------------------------------------------------TGC------------AACTGCAGCACCAGCAGCATCAACAACAACAACAACCAAGCGGCGGCA--------------------------------------------------------AGTTAGCAGCAGCAACA---ACAACACTAGCAATCACA-----------------------------------------------------------------A------------GA------ACAACAGCAAACGCT--------GCA---GTCGC------AGC---AG--------CA-G---------CAGCAGCAGC---------A-----GC------TGCA---GTA------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------
droSim2	x:19213717-19214066 -		AGCAG-----------------CAACACTATCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACAGCGCCAATAGCAACAACTACAAAATGCATTTGACTACCACATCGAGCAATTCAACGGCATCC----------AATGCCAACAACAACAACA-------------------------------------------------------------------------------------------------ACAATACGGCAAACAACAACAACACAAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------ACGACCAACACGAACGGCAGCAGCAACA---ACAACACGAGCGGCAACA----------------------------------------------------------------------------------------------------------------------------------ACAACAACAG------------------CAG---CGGCAAC---AACAGC--------AA------CACGGAGCAGAACACACCGCCCACGCCCGCCCAACTCCTGAATGAGGCCTACACGAAGATGACCTCGGACATCCTGGCGGAGCGGACGCTGGGCGACTTCCTCACCGAGCATCCGGGCGAGCTGATCC--------------------------------------------GC
droSec2	scaffold_8:2716350-2716696 -		AGCAG-----------------CAACACTATCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACAGCGCCAATAGCAACAACTACAAAATGCATTTGACTACCACATCGAGCAATTCAACGGCATCT----------AATGCCAACAACAACAACA-------------------------------------------------------------------------------------------------ACAATACGGCAAACAACAACAACACAAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------ACGACCAACACGAACGGCAGCAGCAACA------ACACGAGCGGCAACA----------------------------------------------------------------------------------------------------------------------------------ACAACAACAG------------------CAG---CGGCAAC---AACAGC--------AA------CACGGAGCAGAACACACCGCCCACGCCCGCCCAACTCCTGAATGAGGCCTACACGAAGATGACCTCGGACATCCTGGCGGAGCGGACGCTGGGCGACTTCCTCACCGAGCATCCGGGCGAGCTGATCC--------------------------------------------GC
droYak3	X:19704870-19705240 -		AGCAG-----------------CAACAACAACACTATCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACAGCGCCAATAGCAACAACTACAAAATGCATTTGACTACCACATCGAGCAATTCAACGGCATCT----------AATGCCAACAACAACAACAATA----------------------------------------------------------------------------------------------ATAATACCGCAAACAACAACAACACAAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------ACGACCAATACGAACGGCAGCAGCAACAACAACAACACGAGCGGCAACA--------------------------------------------------------------------------------------------------ACAAC-----------------A---------ACAACAACAG------------------CAG---CGGCAACAACAACAGC--------AA------CACGGAGCAAAACACACCGCCCACGCCCGCCCAACTCCTGAATGAGGCCTACACGAAGATGACCTCCGACATCCTGGCGGAGCGGACGCTGGGCGACTTCCTCACCGAGCATCCGGGCGAGCTGATCC--------------------------------------------GC
droEre2	scaffold_4929:4973964-4974289 +		AGCAG-----------------AAGCAGCAGCCGCAGCCGCA---------------GCAGAAGCAGCTACAGAAATAATAG---CAACAA---TGAC---A-------------------------------------------G------GAAAA------GC---------AGCAATAACAAC---------------------------------AGCCATAACAGCAGCAGCAG---GAACA------ACAACTGAA------------------------ATAA----------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCGACAG----------------------------------CAGTAAAAGGAGCAACAACG--AGC---------AC------------------------------------AGCAGCAACAGCAGCAGCAACAACATCGCTAATAACAGCTAT--AAGAGAAGCAGCAGCA----------------------------GCGGCAACAACAGCACTAACAGAAGCAGCAGCAGCAACA------ACAG-----------------------------------------------------------------------CAGTTTAAACAT------CA---------------GCAACAAG-----------------A---------ATGACAGCAACAGCAC------TAACAGCAA--------------------CAACAACAGCC---GCA------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

AGAGG-----------------CAACAGCAACAGCAACAGCG---------------ACAGCAGAAGCAACAGAAATTGCAAGTAGCACAG---CACC---A-------------------------------------------A------C---GGC---AACGGCAACGGCAAC---------------------------------------------------------------------G------GCAACAGCAACAGCACCAAT------TAGCACTCCAACAGCACCAACAGCAAGAACGG----------------------------------------TTTATGATAGCAC------------------CACA-------------------------------------------------------------------------------------------------------------------ACAAAACCA--------------------------------C---CAACAACAACAATTTCAAC------------AATAGAACCAACAACAACAACAACA------AC--AAGA------------ACAACAACAGAAAGCACAAC-------------------------------------------------------------------TAC----AGAAAGCA------CAACAGCAGAAAGCAATCCTAGCCA----------CAAGACACTTAAAACAT------TT---------------ACTTTGACAGATGAGCA---GCCGC------AGG---AA--------CA-GCCG---------CAC--------------------------------------------------------------------------------------------------------------------------------------------C-AGGACCCGGAGGAGGCGACCC--------------------------------------------CC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGCA------CAACAGCAGAA...................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................GCAACAGCAACAGCG---------------ACAGCAGAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------CAC--------------------------------------------------------------------------------------------------------------------------------------------C-AGGACCCGGAGGAGGC...................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................GCAAGTAGCACAG---CACC---A-------------------------------------------A------C---GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-------------------------------------------------------------------TAC----AGAAAGCA------CAACAGCAGA....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCA------CAACAGCAGAAG..................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................AACAGCAACAGCAACAGCG---------------ACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA------AC--AAGA------------ACAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
....G-----------------CAACAGCAACAGCAACAGCG---------------AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................A-------------------------------------------A------C---GGC---AACGGCAACGGCAAC---------------------------------------------------------------------G------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------AC--AAGA------------ACAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................C---A-------------------------------------------A------C---GGC---AACGGCAACGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGAGG-----------------CAACAGCAACAGCGACAGCG---------------ACAGCAGAAGCAACAGAAATTGCAAGTAGCACAG---CACC---A-------------------------------------------A------C---GGC---AACGGCAACAGCAAC---------------------------------------------------------------------A------GCAACAGCTACAGCACCAAT------TAGCACTCCAACAACACCAACAGCAAGAACGG----------------------------------------TTTATGATAGCAC------------------CACA------------------------------ACAATACCA---C---------------CAACAACAACAACAA----------------------------------------------------CC-----------------------------A---CAACAACAACAATTTCAAC------------AATAGAACCAACA------ACAACAAC-----------------------------AACAGAAAGCACAAC-------------------------------------------------------------------TAC----AGAAAGCA------CAACAGCAGAAAGCAATCCTAGCCA----------CAAGACACTTAAAACAT------TT---------------ACTTTGACAGATGAGCA---GCCGC------AGG---AA--------CA-GCCG---------CAC--------------------------------------------------------------------------------------------------------------------------------------------C-AGGACCCGGAGGAGGCGACCC--------------------------------------------CC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................AACGGCAACAGCAAC---------------------------------------------------------------------A------GCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0

droWil2

GGCAG-----------------CAACAACAACAGCAACAACA---------------ACTGCAGCAGCAACAACAACAGCAG---CAACAA---CAAC---A-------------------------------------------G------C---AGC---AGCAACAACAGCATCAGCAACAGC------------------------------------------AACAGCAGCAACGAATGCA---------------------------------------ACAGCAACAGCAACAGCAACA-------------------------------------------------------------------GCAACAGCAGCAACAATTGCAGCAACAACAGCAACAGCAGCAACAATGGCAGCAA---------------CAACAACAGCAA----------------------------------------CAACAACTGCAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACAACAGCAGCAGCAACA------AC--------------------------------------------------------------------------------------------A------GCAAC---AGGAACA--------------ACAACAG---CAGC------AGCAA--CA-A---------CAACAACAGC---------A-----GC------AGCA---ACT------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGGCAGCAA---------------CAACAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.70	14	0	14	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--------------ACAACAG---CAGC------AGC........................................................................................................................................................................................................................................	18	20	0.45	9	0	0	0	9	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--CA-A---------CAACAACAGC---------A-----GC------A.....................................................................................................................................................................................	19	20	0.25	5	0	0	0	5	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	4	0
.......................AACAACAACAGCAACAACA---------------ACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	4	0	0	0
..............................................................AGCAGCAACAACAACAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	4	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------CAACAACAGCAA----------------------------------------CAACAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	4	0	0	0
...................................................................................................................................................................................................................................................................................................AACAGCAACAGCAACA-------------------------------------------------------------------GCAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.20	4	0	1	0	0	3
........................................................................ACAACAGCAG---CAACAA---CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	3	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	3	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGGCAGCAA---------------CAACAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	2	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
...................................................................CAACAACAACAGCAG---CAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	3	0
......................................................................................................................................................................................................................................................A---------------------------------------ACAGCAACAGCAACAGCAACA-------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	3	0
...................................................................CAACAACAACAGCAG---CAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	3	0
.................................................................................................................................................................................................................................................................................................................................................................................................AACAATTGCAGCAACAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	1	0	2	0
..............................................................................................................................................................................................................................................................................................ACAGCAACAGCAACAGCAACA-------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	3	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	2	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A---------CAACAACAGC---------A-----GC------AGCA---AC.............................................................................................................................................................................	21	20	0.15	3	0	0	0	3	0
............................................................................................................................................................................................................................................CAACGAATGCA---------------------------------------ACAGCAACAGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0
...............................................................................................................................................................................TCAGCAACAGC------------------------------------------AACAGCAGCAACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---------------CAACAACAGCAA----------------------------------------CAACAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CA-A---------CAACAACAGC---------A-----GC------AGCA---AC.............................................................................................................................................................................	23	20	0.10	2	0	0	0	2	0
.....................................................................................CAACAA---CAAC---A-------------------------------------------G------C---AGC---AGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAACAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AGCAA--CA-A---------CAACAACAGC---------....................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAGCAACA------.................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	1	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA--CA-A---------CAACAACAGC---------A-----GC------AGC...................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0
...AG-----------------CAACAACAACAGCAACAACA---------------ACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAACAATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................AGCAACAGC------------------------------------------AACAGCAGCAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	0	0	1	0
.......................................................................................................................................................................CAACAGCATCAGCAACAGC------------------------------------------AACAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
..............................................................................................CAAC---A-------------------------------------------G------C---AGC---AGCAACAACAGCATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
....................................................................................................................................................................CAACAACAGCATCAGCAACAGC------------------------------------------AACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0
....................................................................................................................................................................CAACAACAGCATCAGCAACAGC------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	0	0	0	1	0
...........................................................TGCAGCAGCAACAACAACAGCAG---CAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACTGCAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0
......................................AACA---------------ACTGCAGCAGCAACAACAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................AGCAACA-------------------------------------------------------------------GCAACAGCAGCAACAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	16	0.06	1	0	0	0	1	0
.......................................................................................................................................................................CAACAGCATCAGCAACAGC------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	1	0
...........................................................................................................................................................................AGCATCAGCAACAGC------------------------------------------AACAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
..............................................................................................................................................................................ATCAGCAACAGC------------------------------------------AACAGCAGCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGC------AGCAA--CA-A---------CAACAACAGC---------....................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.............................................................................AGCAG---CAACAA---CAAC---A-------------------------------------------G------C---AGC---AGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAACAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCAA---------------CAACAACAGCAA----------------------------------------CAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA--CA-A---------CAACAACAGC---------A-----GC------AGCA---AC.............................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAA----------------------------------------CAACAACTGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACA------AC--------------------------------------------------------------------------------------------A------GCA.........................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CAACAATTGCAGCAACAACAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACA------AC--------------------------------------------------------------------------------------------A------GCAAC---A...................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAACA------AC--------------------------------------------------------------------------------------------A------G...........................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
................................AGCAACAACA---------------ACTGCAGCAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.........................CAACAACAGCAACAACA---------------ACTGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATGGCAGCAA---------------CAACAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAA--CA-A---------CAACAACAGC---------A-----GC------AGC...................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1
................................................................................AG---CAACAA---CAAC---A-------------------------------------------G------C---AGC---AGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAA----------------------------------------CAACAACTGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAACAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCAACAACAGCAACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
........................................................................................CAA---CAAC---A-------------------------------------------G------C---AGC---AGCAACAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGGCAGCAA---------------CAACAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCAACAACAGCAACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAGCAGCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.................................................................AGCAACAACAACAGCAG---CAACAA---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
...........................................................................ACAGCAG---CAACAA---CAAC---A-------------------------------------------G------C---AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGCAACAATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
............................CAACAGCAACAACA---------------ACTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAACA------AC--------------------------------------------------------------------------------------------A------............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAACAACAGCAACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA----------------------------------------CAACAACTGCAGCAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCAGCAA---------------CAACAACAGCAA----------------------------------------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---------------CAACAACAGCAA----------------------------------------CAACAACTGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................AACAATTGCAGCAACAACAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..........................................................................................A---CAAC---A-------------------------------------------G------C---AGC---AGCAACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..........................AACAACAGCAACAACA---------------ACTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.......................................................................AACAACAGCAG---CAACAA---CAAC---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
......................................................................................AACAA---CAAC---A-------------------------------------------G------C---AGC---AGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
..............................................................................GCAG---CAACAA---CAAC---A-------------------------------------------G------C---AGC---AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
GGCAG-----------------CAACAACAACAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................AACAGCAACA-------------------------------------------------------------------GCAACAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..............................ACAGCAACAACA---------------ACTGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AGCAA--CA-A---------CAACAACAGC---------A-----GC------AGCA---...............................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAATGGCAGCAA---------------CAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------CAACAACAGCAA----------------------------------------CAACAACTGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA----------------------------------------CAACAACTGCAGCAGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
GGCAG-----------------CAACAACAACAGCAACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACAACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGCAGCAACA------.................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCAA---------------CAACAACAGCAA----------------------------------------CAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG---CAGC------AGCAA--CA-A---------CAACAAC................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................AACAACAACAGCAG---CAACAA---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGGCAGCAA---------------CAACAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...................................AACAACA---------------ACTGCAGCAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA----------------------------------------CAACAACTGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAACAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................ACAGCAACA-------------------------------------------------------------------GCAACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAA----------------------------------------CAACAACTGCAGCAGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAA........................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAACAATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...................................................................CAACAACAACAGCAG---CAACAA---CAAC---A-------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................CA---------------------------------------ACAGCAACAGCAACAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGGCAGCAA---------------CAACAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAACAGCAGCAACAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.................................................................................G---CAACAA---CAAC---A-------------------------------------------G------C---AGC---AGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA--CA-A---------CAACAACAGC---------A-----GC------AGC...................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGC................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
....................................................................AACAACAACAGCAG---CAACAA---CAAC---A-------------------------------------------G------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
.................................................................................G---CAACAA---CAAC---A-------------------------------------------G------C---AGC---AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCAGCAACA------.................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAG---CAGC------AGCAA--CA-A---------.......................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAA........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................ATCAGCAACAGC------------------------------------------AACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.............................AACAGCAACAACA---------------ACTGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................TGCA---------------------------------------ACAGCAACAGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGCAACAACAGCAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAA----------------------------------------CAACAACTGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACAACAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCAGCAA---------------CAACAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................CAACAA---CAAC---A-------------------------------------------G------C---AGC---AGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
.............................AACAGCAACAACA---------------ACTGCAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..........................................................................AACAGCAG---CAACAA---CAAC---A-------------------------------------------G------C---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCAA---------------CAACAACAGCAA----------------------------------------CAACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------------------------------------CAACAACTGCAGCAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAA----------------------------------------CAACAACTGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCAA---------------CAACAACAGCAA----------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..........................AACAACAGCAACAACA---------------ACTGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...AG-----------------CAACAACAACAGCAACAACA---------------ACTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0
................................AGCAACAACA---------------ACTGCAGCAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A---------CAACAACAGC---------A-----GC------AGCA---...............................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................AACAATTGCAGCAACAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AGCAA--CA-A---------CAACAACAGC---------A-----GC------......................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------------------GCAACAGCAGCAACAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAA--CA-A---------CAACAACAGC---------A-----GC------A.....................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAA----------------------------------------CAACAACTGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATGGCAGCAA---------------CAACAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...............................................................................................AAC---A-------------------------------------------G------C---AGC---AGCAACAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
......................................................................CAACAACAGCAG---CAACAA---CAAC---A-------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1

droVir3

G-CAA--------------------CAGCAACAGCAACAACG---------------ACAGCAACAGCAGCAATTGTTGGCAGCAGCACAG---TAGC---A-------------------------------------------G---CAAC---A------GC---------AGCTGCGGCAGC------------------------------------------------------------A------ACAGATGCTGC-------------------------------------------------------------------------------------------------------------------------------------TGCAGCCGCCGCCGCGCCTTCGTCACCGGCAC---------------CGACAACAACAACAACAACTAG----------------------------------------CACAACTAGCACACC--------------------------AACAACTAC---------------------------------AACAACAACAACA------AC--AACA------------ACAACAATAGAAAGCACACCAAC----------------------------------------------------------------AAC----AACAACTA------CAACAACACCAAGCAATCCA-ACCACAAGCCA---C---ACATTTAAAACAT------TT---------------ACTTCAACAGATGAGCA---GCCGC------CAG---CA--------TC-GCTG---------CA----C---------A-----------------ACA------------------------------------------------------------------------------------------------------------------------------GCA--------------------------------------------AC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................GC-------------------------------------------------------------------------------------------------------------------------------------TGCAGCCGCCGCCGCGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTCACCGGCAC---------------CGACAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................A------ACAGATGCTGC-------------------------------------------------------------------------------------------------------------------------------------TGCAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACCAAC----------------------------------------------------------------AAC----AACAACTA------CAA...........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................AGCAGCACAG---TAGC---A-------------------------------------------G---CAAC---A------GC---------AGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................C---A------GC---------AGCTGCGGCAGC------------------------------------------------------------A------ACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACTAG----------------------------------------CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................CAACAACG---------------ACAGCAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------AACAACTAC---------------------------------AACAACAACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC----------------------------------------------------------------AAC----AACAACTA------CAACAAC.......................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCAG-----------------CAGCAGCAACAGCAGCAGCA---------------ACAGCAGCAGCAACAGCAGCAGCGA---CAGCAGCAGC------A-------------------------------------------G------C---AGC---GACAACAACAGCAGCAGCAACAGC------------------------------------------------------------------------AGCAACAGCAGCGAC------------------AGCAGCAACAG-------------------------------------------------------------------CAGCGACAGCAGCAACA----------------------------------------------------------------------------------------------GCAATAGCAGCAACAGCAGCAACAGGAGCAGCAGCAACAGC-----------------------------------------------AGCAGCGACAGCAGCAGCAGCAGCGACAGCAACAGCAGCAGC--AACAGCAGCAATAGCA----------------------------GCAGCAGCAACAGCAATAGCAGCAACAGCAACA-------------------------------------------G----------------------CAGC------------C---GCAGCAAAAGCAG------CC---------------GCAGCAACAG-----C---------AG---CCGC------AGCAGCAACAT------CAACAGCAG--------------------CAACAGCAGCAAGAGCA------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................................................................CAGCAACAGC------------------------------------------------------------------------AGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	4	0	0	0	0	0
............................................................................................................................................................AGC---GACAACAACAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	1	0	0	0	0	0
....................................................................AACAGCAGCAGCGA---CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	1	0	0	1	0	1
......................CAGCAGCAACAGCAGCAGCA---------------AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	3	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AACAGCAGCAATAGCA----------------------------GCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AACAGCAGCAATAGCA----------------------------GCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC-----------------------------------------------AGCAGCGACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	1	0	0	0	0	1
................................................................................................................................................................................CAGCAACAGC------------------------------------------------------------------------AGCAACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAT------CAACAGCAG--------------------CAACA........................................................................................................................................................................................	23	16	0.06	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------CAACAGCAG--------------------CAACAGCAGC...................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAT------CAACAGCAG--------------------C............................................................................................................................................................................................	21	18	0.06	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	19	0.05	1	0	0	0	0	1	0
.................................................................................A---CAGCAGCAGC------A-------------------------------------------G------C---AGC---GACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	19	0.05	1	0	0	0	0	1	0
........................GCAGCAACAGCAGCAGCA---------------AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC-----------------------------------------------AGCAGCGACAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCGACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
.......................................................................................GCAGCAGC------A-------------------------------------------G------C---AGC---GACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................AACAGCAGCAGCAACAGC------------------------------------------------------------------------AGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAG-----C---------AG---CCGC------AGCA.......................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGC--AACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
......................................................................CAGCAGCAGCGA---CAGCAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.GCAG-----------------CAGCAGCAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
............................................................................................................................................................................GCAGCAGCAACAGC------------------------------------------------------------------------AGCAACAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................ACAGCAGCAGCAACAGC------------------------------------------------------------------------AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
......................................AGCA---------------ACAGCAGCAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC-----------------------------------------------AGCAGCGACAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....................................................................AACAGCAGCAGCGA---CAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGGAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGACAGCAACAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0

droGri2

AGGAG-----------------CAGCAACAACAGGAGCAACG---------------GCAGCAAGAGCAACGGCAAAAGCAA---CAGCACGAGCAAG---AACAGCAACAGCA-------------------------------A------C---AGCTGGAGCAACAACAACAACAGCAGCTGCATCAGAAACAGCAGG-----------------------------------------------------------------------------------------------------------------------------AGCAACAACGACCGGAGCAACGGCAA---------------------------------------------------------------------------------------------------------------------------------------AA------------GCAAGAGCA-----------------------------------------------AGAACAGC---AACAGCAACAGCAACAGCTGGAGCAACAACTACAACAACAGC--AGCA------------GCAGCAACAGGAGGAGCAACGGCAAA-------ATCAACAGCAAGAGCAAGAACAGCAACAGCAA-----------------------------------------------------------------------------------CAGCTGGAGCAA------CA---------------ACAACAAC-----------------AGCAGCAGCAACAA--------CA-G---------CAGCAG---CAG--------------CAAC---AACAGGA------------------------------------------------------------------------------------------------------------------------------GGA--------------------------------------------GC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................................................................................................................................GG-----------------------------------------------------------------------------------------------------------------------------AGCAACAACGACCGGAGCAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
...............................................................AGAGCAACGGCAAAAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
............................................................GCAAGAGCAACGGCAAAAGCAA---C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGGAGGAGCAACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
........................GCAACAACAGGAGCAACG---------------GCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
............................CAACAGGAGCAACG---------------GCAGCAAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0
..............................ACAGGAGCAACG---------------GCAGCAAGAGCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1
............................................................................................................ACAGCA-------------------------------A------C---AGCTGGAGCAACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA-----------------------------------------------------------------------------------CAGCTGGAGCAA------CA---------------ACA................................................................................................................................................................................................................................................................................	24	2	0.50	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAG--------------CAAC---AACAGGA------------------------------------------------------------------------------------------------------------------------------GG...............................................	20	4	0.25	1	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGGAGGAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	6	0.17	1	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC-----------------AGCAGCAGCAACAA--------CA-G---------CA.....................................................................................................................................................................................................................	24	20	0.10	2	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------ACAACAAC-----------------AGCAGCAGCA................................................................................................................................................................................................................................................	19	20	0.10	2	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAA--------CA-G---------CAGCAG---CAG--------------CAAC---......................................................................................................................................................................................	26	20	0.05	1	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC-----------------AGCAGCAGCAACAA--------CA-G---------CAGC...................................................................................................................................................................................................................	26	20	0.05	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGC--AGCA------------GCAGCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1

droAna3

AGAAG-----------------CAGCAGCAGAAGCAGCAACATCAATTGATTTCGGTGATACTTCAACAGAAGATATTGCA---------CAAAAAGC---A------------AATAATGCACAA-------------------A------C---AGA---ACCAGAAACTGCAAC---------------------------------------------------------------------A------ACTATTGCACCAGCAATTAG------TAGCACAACTTTCA-------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAACAATAGATAG---------------------------------------------C------------------ACAACAACAACAA---CAATTACTACAACAA---C------------ACAACAACCAACA------ACAACAACT---AC---------------------------------------------------------------------------------------------TAGAA----------CAACA------ACAACAGCTACAACACAAAGCAATCCCAGCCC----------C---ACACTTAAAACAT------TT---------------ACTTCAACAGATGAGCA---GCA---------------------------------------------AC---------AGCAGC--------AACAAGAGCA------------------------------------------------------------------------------------------------------------------------------G---------------GCATC------------AGGATCCGATTCG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGAGCA---GCA---------------------------------------------AC---------AGC.................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
............................................................................................................................................................................................................................................................................ATTAG------TAGCACAACTTTCA-------------------------------------------------------------------------------------------------------------------------------------------------------CAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT------TT---------------ACTTCAACAGATGAGC...................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................TGCACAA-------------------A------C---AGA---ACCAGAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCA---GCA---------------------------------------------AC---------AGCAGC--------AAC...................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
............................................................................................................................AA-------------------A------C---AGA---ACCAGAAACTGCAAC---------------------------------------------------------------------A------ACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGAGCA---GCA---------------------------------------------AC---------AGCAGC--------AAC...................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAA---CAATTACTACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................TCAACAGAAGATATTGCA---------CAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCA---GCA---------------------------------------------AC---------AGCAGG--------......................................................................................................................................................................................	18	10	0.10	1	0	1	0	0	0	0

droBip1

AAATC-----------------CAGTATCAC---C----------------------------------------------------GCTCCAGCAAC---AACAGCAACACCA-------------------------------A------C---AGCAGCAGCAGCAACAGCAACAGCAGCAGCAACAGCAACAGCAGCAGGCACAGCAACAGCAGCAGGCACAGCAACAGCAGCAG---GCACAGCAGCCGCAACAGCACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------CCACAACAACAACAACAACAAC-------------------AGCAGCAATCACAACAACATAAGCA--------------------------------A---CAACAGCAGCAACTTCTCC---------AACAAAAGCAACAGCA------------------------------------------------------------------GCAGCAGCAACAGCAACATCAGGCCCTGCAACAGCAACA-------------------------------------TCAAGC----------------------------CACACC---ACAGCAATCGCAGCCACATCA------GCAACTTCAGGCTCA--------------TCAGCAG---CAA--------------CA-TCTC---CACCAGCAGCAGC---------A-----GC------AGCAA------------------------------------------------------------------------------------------------------------------------------CATCT--------------------------------------------CC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCAT-----------------TTACAGCAGCAGCAGCATTT---------------ACAGCAGCAGCAACAACAGCATCTA---CAGCAGCAGC------A-------------------------------------------A------C---AAC---AGCATTTACAGCAGCAGCAGCAGC---------------------------------------------------AGCATTTACA---------------------------------------GCAGCAGCAGCAACAGCATCT-------------------------------------------------------------------ACAGCAGCAGCA-------------------------------------------------------------------------------------------------------------GCAACATCACCAGCAGCAACAACAAC--------------------------------------AGCATCTACAGCAGCAACAGCAGCAGCTGCAGCAACATCTACAGCAGCAAC--AGCAGCAGCATCATCT----------------------------ACAGCAGCAGCAGCATCTACAGCAACAGCAGCA----------------------------------------------TCTACA-------------------------------------------------------------GCAGC---AGC-----------AGCAGCAGCAGCA------------T---CTA--CA-GCAG---CAGCAGCAGCAGC---------A-----GC------AGCAT------------------------------------------------------------------------------------------------------------------------------CATCT--------------------------------------------CC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AATTG-----------------CAATTGCAGCAGCAACAAGC---------------A---------CAACAGATATTGCAAGTAGCTCAG---CACAACCA-------------------------------------------C------C---ACC---ACCGGCAACAGCAAC---------------------------------------------------------------------A------ACAATTGCACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------CAGCAACAGCAACAACAATTAG---------------------------------------------CACCACCACCACCTCCTCCACAACAACA---A---CAACAACAACAAGTAC---------------ACAACAACCACCA------ACAACAAC--------------------------------------------------AA--------------------------------------------------------------CAACA------ACAACAAGCAGAACAGAAAGCAATCCCAGTCC----------C---ACACTTAAAACAT------TT---------------CATTTAACAGATGAGCA---GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGAAACGGAAACGGAAACGGCAAATCAACCAGAAACGGATGGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCAA-----------------CAG---AAATTGCAATTGCA---------------ACAGCAGCAGCAACAGAAATTGCAAGTAGTCTAG---CACC---G-------------------------------------------T------T---ATC---ACCGGCAACAGCAGC---------------------------------------------------------------------A------ACAATTGCACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------CTGCAACTGCAACAACAATAAGCACCACCACCTCCACCACC-ACCACCAC-----------------C------------------ACAACAACAAGAA---CAACAGCAACAAGTACACC------------ACAACCACCACCA------ACAAC-----------------------------------------------------AA--------------------------------------------------------------CAACA------ACAACAAGCAGAACAGATAGCAATCCCAGCCC----------C---ACACTTAAAACAT------TT---------------CATTTAACAGATGAGCA---GCA---------------------------------------------GC---------A-----------------------------------------------------------------------------------------------------------------------------------------------------ACAGGAAGTGGAAACGGAAA------------------------GT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCAG-----------------CAGCAGCAGCAGCAACATCT---------------GCAGCAGCAGCAACAG---TTGCAACTACAGCAG---CAGC---A-------------------------------------------G------C---AGC---AGCAGCAACAGCAGCTGCAACAGC---------------------------------------------------------------------------AACACT-------------ATCATAACTACAGCGGCAATAGCAACAATTACAAAATGCATTTAACTACCACATCGAGCAATTCAACGGCATCT----------AATGCCAACAATAATAACAACA----------------------------------------------------------------------------------------------ACAACACCACCAACAACAACAACACAAGCAGCAACA--------------------------------------------------------------------------------ACAACAACA---AC---------------------------------------------------------ACGAGCAACACAAATGGCAGCAGCAACA------ACACGAGCGGCAACAAC----AACAGCAA------CAACA---------------------------------------------------------------------------------------------------------ACAACAACAG------------------TAG---TGGCAACAACAACAGC--------AA------CACAGATCAAAATACACCA----------------------------------------------------------------------------------------------------------CCA--------------------------------------------AC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGCCAAAGTCAACCAAAGCAGCAGGCGAAGGAGGAACAGCA---------------GCAGCAGCAGCAACAG---CAGCAA------CAG---CAGC---A-------------------------------------------A------CAGCAGCAGGAATTGCAACAGCAACTTCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC-----------------------------------------------------------------ATAGCCAACAGCAACAACTGAATCATCAACAACAGCAGCAA----------------------TTTCAGCAGCAGCAACAGCAACAGAAGCAGCAGCA----------------------------------------------------------------------------------------------------------------ACAGCAACAGAAGGAACAACATC-------------------AGCAACCCAATCAACAGCAGCAACA---GCAGCAGGAACTGCAACA----------------G----------------------------------------------CAAATGCAG------CAATTTCAGCAGC---AGG-----------AACA---GCAAC------AGA---AG--------CA-AGAGCAACAG---A-----------------------------AGCAAGA------------------------------------------------------------------------------------------------------------------------------GCA--------------------------------------------GC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

G-CAA--------------------CTGAAATTGCACTCGCC---------------GTTGCAACAGCAACAGATATTGCAAGTAGCTCAG---CACCACCT-------------------------------------------T------T---ACC---ACCGGCAACAGCAAC---------------------------------------------------------------------A------ACAATAGCACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------CTGCAACTTCAACAACAATTAG---------------------------------------------CACCACCAGC---------ACAACAACA---A---CAGCAACAACAAGTACAAC------------ACAACAACCACCA------ACAGCAACA-------------------------------------------------------------------------------------------------------------------------------ACAAGCAGTACAGATAGCAATCCCAGCCC----------C---ACACTTAAAACAT------TT---------------CATTTAACAGATGAGCA---GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGACGAGGAAACGGAGA------------------------GC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

G-CAA--------------------CAGAAATTGCAATTGCA---------------CTTGCAACGGCAACAGAAATTGCAAGTAGCTCAG---CACCACCA-------------------------------------------A------T---AGC---ACCGGCAACAGCAAC---------------------------------------------------------------------A------ACAATAGCACCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------CAGCAACAG------CAATTAG---------------------------------------------CACCAACAAC---------ACCACCACA---ACAGCAACAACAACAAGTACAAC------------ACAACAACCACCA------CCAAC-----------------------------------------------------AA--------------------------------------------------------------CAACA------ACAACAAGCAGAACAGAAAGCAATCCCAGCCC----------C---ACACTTAAAACAT------TT---------------CATTTAACAGATGAGCA---ACA---------------------------------------------GC---------A-----------------------------------------------------------------------------------------------------------------------------------------------------ACAGGAAACGGAAACGGAGAC------------CGGAACCGAAAGT	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGAAG-----------------CAGAAGCAACAACAACAGCA---------------GCAGCAGAGGCAGA--------------GCAAGG---CGCC---A------------TCTGAAGCGGAATCGGAGGCAGACCGCCCCGGCAGCAAC---A---------------GCAGC---------------------------------------------------------------------------------AGCACCAGCAACAACAAGCATTCGCGTCGCAGCAGCGCCGGCAGCAACAACAACAAATAGCAAAAACTT-----------------AGCAGCGTTCGGCAAAGCGCAGCAAAAGCAACAAAGGCA-------------------------------------------------------------------------------------------------ACACTAAAACTAACAGCAGCAACACCAAT--------------------------------------------------TGC------------AACTGCAGCACCAGCAGCATCAACAACAACAACAACCAAGCGGCGGCA--------------------------------------------------------AGTTAGCAGCAGCAACA---ACAACACTAGCAATCACA-----------------------------------------------------------------A------------GA------ACAACAGCAAACGCT--------GCA---GTCGC------AGC---AG--------CA-G---------CAGCAGCAGC---------A-----GC------TGCA---GTA------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCAAT--------------------------------------------------TGC------------AACTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....G-----------------CAGAAGCAACAACAACAGCA---------------GCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---GTCGC------AGC---AG--------CA-G---------CAGCA..................................................................................................................................................................................................................	20	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AACAACAGCA---------------GCAGCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AGCAACAACAACAGCA---------------GCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGCAG-----------------CAACACTATCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACAGCGCCAATAGCAACAACTACAAAATGCATTTGACTACCACATCGAGCAATTCAACGGCATCC----------AATGCCAACAACAACAACA-------------------------------------------------------------------------------------------------ACAATACGGCAAACAACAACAACACAAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------ACGACCAACACGAACGGCAGCAGCAACA---ACAACACGAGCGGCAACA----------------------------------------------------------------------------------------------------------------------------------ACAACAACAG------------------CAG---CGGCAAC---AACAGC--------AA------CACGGAGCAGAACACACCGCCCACGCCCGCCCAACTCCTGAATGAGGCCTACACGAAGATGACCTCGGACATCCTGGCGGAGCGGACGCTGGGCGACTTCCTCACCGAGCATCCGGGCGAGCTGATCC--------------------------------------------GC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACA---ACAACACG............................................................................................................................................................................................................................................................................................................................................................................................	18	3	1.00	3	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------ACG................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	1.00	3	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................ATAGCAACAACTACAAAATGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC--------AA------CACGGAGCA.....................................................................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------------------CAG---CGGCAAC---AAC.................................................................................................................................................................................................	18	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGCAG-----------------CAACACTATCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACAGCGCCAATAGCAACAACTACAAAATGCATTTGACTACCACATCGAGCAATTCAACGGCATCT----------AATGCCAACAACAACAACA-------------------------------------------------------------------------------------------------ACAATACGGCAAACAACAACAACACAAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------ACGACCAACACGAACGGCAGCAGCAACA------ACACGAGCGGCAACA----------------------------------------------------------------------------------------------------------------------------------ACAACAACAG------------------CAG---CGGCAAC---AACAGC--------AA------CACGGAGCAGAACACACCGCCCACGCCCGCCCAACTCCTGAATGAGGCCTACACGAAGATGACCTCGGACATCCTGGCGGAGCGGACGCTGGGCGACTTCCTCACCGAGCATCCGGGCGAGCTGATCC--------------------------------------------GC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------------------------------------ACAACAACAG------------------CAG---CGGC..........................................................................................................................................................................................................	18	8	0.13	1	0	0	1	0

droYak3

AGCAG-----------------CAACAACAACACTATCACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACAGCGCCAATAGCAACAACTACAAAATGCATTTGACTACCACATCGAGCAATTCAACGGCATCT----------AATGCCAACAACAACAACAATA----------------------------------------------------------------------------------------------ATAATACCGCAAACAACAACAACACAAGCAGCAACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------ACGACCAATACGAACGGCAGCAGCAACAACAACAACACGAGCGGCAACA--------------------------------------------------------------------------------------------------ACAAC-----------------A---------ACAACAACAG------------------CAG---CGGCAACAACAACAGC--------AA------CACGGAGCAAAACACACCGCCCACGCCCGCCCAACTCCTGAATGAGGCCTACACGAAGATGACCTCCGACATCCTGGCGGAGCGGACGCTGGGCGACTTCCTCACCGAGCATCCGGGCGAGCTGATCC--------------------------------------------GC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACGAAGATGACCTCCGAC........................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACACGAGCG........................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAG------------------CAG---CGGCAACAA.....................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAACAACAG------------------CAG---CGGCAA........................................................................................................................................................................................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAACAACAG------------------CAG---CGGC..........................................................................................................................................................................................................	18	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAACA--------------------------------------------------------------------------------------------------ACAAC-----------------A---------ACAAC...........................................................................................................................................................................................................................................	19	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AGCAG-----------------AAGCAGCAGCCGCAGCCGCA---------------GCAGAAGCAGCTACAGAAATAATAG---CAACAA---TGAC---A-------------------------------------------G------GAAAA------GC---------AGCAATAACAAC---------------------------------AGCCATAACAGCAGCAGCAG---GAACA------ACAACTGAA------------------------ATAA----------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCGACAG----------------------------------CAGTAAAAGGAGCAACAACG--AGC---------AC------------------------------------AGCAGCAACAGCAGCAGCAACAACATCGCTAATAACAGCTAT--AAGAGAAGCAGCAGCA----------------------------GCGGCAACAACAGCACTAACAGAAGCAGCAGCAGCAACA------ACAG-----------------------------------------------------------------------CAGTTTAAACAT------CA---------------GCAACAAG-----------------A---------ATGACAGCAACAGCAC------TAACAGCAA--------------------CAACAACAGCC---GCA------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACA------ACAG-----------------------------------------------------------------------CAGTTT................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACA------ACAG-----------------------------------------------------------------------CAGT..................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCAGCAGCA----------------------------GCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA----------------------------GCGGCAACAACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0

dps_2569

XL_group1a:7889555-7889803 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads