ID:

dps_2552

 Coordinate:

XL_group1a:6867046-6867162 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.3 -24.3 -24.2

Flybase annnotation

exon [dpse_GLEANR_10762:11]; CDS [Dpse\GA17013-cds]; exon [dpse_GLEANR_10762:10]; CDS [Dpse\GA17013-cds]; intron [Dpse\GA17013-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
  1. 3:11451763-11451786 -
  2. 3:18733702-18733725 -
  3. 2:2935976-2935999 +
  4. 2:7097461-7097484 +
  5. 2:11946237-11946260 +
  6. XL_group3a:2675867-2675890 +
  7. dps_2552  XL_group1a:6867078-6867101 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------##################################################
GAGCAGCGCCAGCCAGAGGCAGCAGCTGTAGCTGCCAATTTTCCGCATCCGTCAGAGGCAGCCCCACCAGAACAGGGAGAACATTTTCCAGCAGGAGCCCCACCTCCAGCAGCAGCAGCAGCAGCAGCAGGAACAGCAGGAGGAGCAGGAGCTACAGGTAGCTACAGTTCGAGTAACTCTGGGGGATCCAGCAGCACCACCAGCAACCACTATTGCA
**************************************************......(((.(((............(((((....))))).((....))....(((((.((....((.((....)).)).......)).)))))(((....)))...))).)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
......................................GTTTCCACATCCGTCAGA................................................................................................................................................................. 18 2 6 0.33 2 2 0 0
...............................................................................................................GCAGCAGCAGCAGCAGCAGGAACA.................................................................................. 24 0 7 0.14 1 1 0 0
..............................................................................................GAGCCTCACCTCGAGCACCA....................................................................................................... 20 3 20 0.10 2 0 2 0
........................................................................................................................GCAGCAGCAGGAACAGCA............................................................................... 18 0 20 0.10 2 2 0 0
......................................................................................................CCTCCAGCAGCAGCAGCAGC............................................................................................... 20 0 18 0.06 1 0 0 1
..............................................................................................GAGCCCCACCTGGAGCACCA....................................................................................................... 20 3 20 0.05 1 0 1 0
....................................................................................................................AGCAGCAGCAGCAGGAACA.................................................................................. 19 0 20 0.05 1 1 0 0

Anti-sense strand reads

CTCGTCGCGGTCGGTCTCCGTCGTCGACATCGACGGTTAAAAGGCGTAGGCAGTCTCCGTCGGGGTGGTCTTGTCCCTCTTGTAAAAGGTCGTCCTCGGGGTGGAGGTCGTCGTCGTCGTCGTCGTCGTCCTTGTCGTCCTCCTCGTCCTCGATGTCCATCGATGTCAAGCTCATTGAGACCCCCTAGGTCGTCGTGGTGGTCGTTGGTGATAACGT
**************************************************......(((.(((............(((((....))))).((....))....(((((.((....((.((....)).)).......)).)))))(((....)))...))).)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
.......................................................TCCTTCGGGGCGATCTTGTCC............................................................................................................................................. 21 3 3 0.33 1 1
........GGTCGGTCTCTGTCGTCGCCTTC.......................................................................................................................................................................................... 23 3 5 0.20 1 1
.......................................CAAGGCGTAGGCTGGCTCC............................................................................................................................................................... 19 3 12 0.08 1 1
........GGTCGGTCTCTGTCGTCGCCT............................................................................................................................................................................................ 21 3 20 0.05 1 1
...........................................................................................................................................................................TCCTTTAGACGCCCTAGGTC.......................... 20 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:6866996-6867212 - dps_2552 GAGCAGC------G---CCAGC-----------------CAGAGGC------AGC-AGCTGTAGCTG---------CCAATTTTCC----------------GCATCCGT---CA-----------GAGGCAGCCCCACCAGAACAGGGAG------AAC------------A-----TTT----------------TCCAGCA---------GGAG---CCCCAC------CTCCAGCAGCAGCA---GCAGC-----------------------------------AGCAGCAGGAACAGCAGGAGGAG------------------CAGGA------GCTACAGGTAGCTA---------------CAGTTCGA------------GTAACTCTGGGGGATCCAGC---AGCACCA------------CCAGCAA---------C---------CACTATTGCA
droPer2 scaffold_25:424293-424503 + GAGCAGC------G---CCAGC-----------------CAGAGGC------AGC-AGCTGCAGCTG---------CCAATTTTCC----------------GCATCCGC---CA-----------GAGGCAGCCCCACCAGAACAGGGAG------AAC------------A-----TTT----------------TCCAGCA---------GGAG---CCCCAC------CTCCAGCAGCAGCA---GGAAC--------------------AACAG---------CAGGAGC------AGGAGCAGGAG------------------CTAC---------AGCT--AG-CTA---------------CAGTTCGA------------GTAACTCTGGGGGATCCAGC---AGCACCA------------CCAGCAA---------C---------CACTATTGCA
droWil2 scf2_1100000003104:1934-2145 - GAGCCCT------G---CCA------------------CCAGCAGCAGC---AG-CAGCACTACCAT---------CAACATCAGCAGCACCAGCAG---CA-------GTAG-----------------CA----------------------------------------------------GCA--------ACATCAGCACTGCCAGTAGCAGCAGC---AG------GACCAGCA---------GCAGT--------------------AGCAG---------CAGCAGCACCAGCAGCAGTAGGAGCAACATCAGCAGCAGTAG---CA---------------G-CA---------A------CATC---AGCA------CTGCCAGCAGCA------GCAGC---AGCAACA------------TCAGCAG---------C---------AACATCAGCA
droVir3 scaffold_13052:1898160-1898363 - -AGCAGC------A---GCA------------------GCAGCAGC------AGC-AGCAGCAGCAGTA--------ATTAGCTGCAGCAGCAGCAG---CA-------GCAGCAGCAGTA-------ATTAGCT------------------------------------------------------------GCAGCAGCA---------GCAG---CCGCAG------CAGCAGCA---------GCAGC--------------------CGCAG---------CAGCAGCAGCAGCCGCAGCAGCAG------------------CAGC---------AGCAGTAG-TA------A--TTAGCTGCAGC---------------AGCAACAGCC------GCAGC---AGC---A------------GCAGCAGCCGCAGCAGC---------A---GCCGC-
droMoj3 scaffold_6308:431070-431290 - GAGCAGC------A---GCA------------------GCAGCAGCAGC---AG-CAGTAGCAGCAG---------CAGCAGCAACAGCAGCAGCAG---CA-------ACAG---------------------------------------------------------------------CAGCA--------GCAGCAGCAACAGCAGCAG------CAGCAGCAGCAGCAGCAACA---------GCAGC--------------------AGCAG---------CAGCAACAGCAACAGCAACAGCAG------------------CAGGA------GCAGCAGCAG-CAG---------------CAGCAGCA------------ACAGCAGCAG---------GAGCAGCAGCAGCAGCAGCAACAGCAGCAG---------CAAC------TGAAACTGCA
droGri2 scaffold_3013:3890-4101 - CAGCAGC------G---GCA------------------GCGGCAGCGGC---AG-CAGCAGCAGCAG---------CAGCAGCAGCGGCAGCAGCAG---CA-------GCAG--------------------CA-------------------------------------------------GCA--------GCAGCAGCGGCAGCAGCAGCAG---CAGCAGCAGCAGCAGCAGCA---------GCAGC--------------------AG------------CAGCAGCAG---CATCAGCAGCGGCAGCAGCAGCAGCAGCGG----------------------CAG---------------CAGCAGCAGCA------GCAGCGGCAGCA------GCAGC---AGCAGCA------------GCAGCAG---------C---------GGCAGCAGCA
droAna3 scaffold_12943:2473345-2473550 + CAACAGC------T---CCA------------------GCAGCAGCAGC---AA-TTGCTGCAGCTT---------TCCATTCAACA-----------------------------------------------------------GGCGG------CGC------------A--------TCAC--CATCAACAGGAGCAGCATCGCCAACAGCAGCAACAACAAC------AGCAGCA---------GCAAC--------------------ACCAG---------CAGCAGCAACAACAGCAACAGCAC------------------CATCA------GC----------AACAGCAAGGC------CATCCACA------------GGCACCACC------GCCGC---AGCAGCA------------ACAGCAG---------C---------CACCGCCGCA
droBip1 scf7180000395567:7266-7473 - CAGCAGC------G---GCA------------------GCAGC-CCAGCAACAG----CAGCTGCAG---------CAACAGCACCAG---CAGCAGCAACA-------CCAG-----------------CA----------------------------------------------------GCA--------ACAACAGCAGCAACATCAGCTGCAAC------AGCACCAGCAACA---------GTTACAAC-----------------ACCAG---------CAGCAGCAGCAACAGCAACAGCAC------------------CTGCA------CCAGCAACAG-CTT---------------CAGCCGCA------------CCAGCAGCA------AATGC---AACACCA------------CCAGCAG---------C---------AACAACAGCA
droKik1 scf7180000302685:196454-196643 + -AGCAGC------A---ACA------------------GCAGCAGC------TGC-AGCAACATCTA------------CAGCAGCAACAGCAGCAG------------------------------CATCATCTA-----------------------C------------A--------GCA-----------GCAGCA------------GCATCTAC------AGCAACAGCAGCA---------TCTAC--------------------AGCAG---------CAGC---------AGCAGCAGCAGCATCTACAGCAGCAGCAGCAGCA---GCAGC----------AG---------------C------A---------TCATCTCCAGCA------GCAGC---AGCAACA------------ACAGCAT---------T---------ACCCGCCGCA
droFic1 scf7180000449741:490-689 + GAGCGGC------C---GCA------------------GCAGCATAAGC---CG-CAGCAGCAGCCG---------CAGCAGCATAAG---CCGCAG------------------------------CAGCAGCCGCA----------------------------------------------GCA--------GCATAA------------GCCGCAGCAGCAGCCGCAGCAACATCA---------GCAGC--------------------AGGCG---------CAGCCGCATCAACGGCAGCCGGAG------------------CAACA------ACAACAGCAG-CCC---------------CAGCAGCA------------GCAACGGCGGCAGC---------GAC---A------------GCAGCAG---------CCGCAGCAACAAT------T
droEle1 scf7180000487213:8982-9177 - -AGCAGC------ATTGGCC------------------GCAGCAGC------AT----CAGCCGCAG---------CAGCATCAGCCGCAGCAGCAT---CA-------GC-----------------ATCAGCC------------------------------------------------------------GCAGCAGCATCAGCATCAGCCGCAGCAGCATC------AGCCG--------------------------------------CAGCAGCATCAGCCGCAGCAGCATCAGCCGCAGCAG------------------CATCA---------------G-CCA---------------CAGCAGCA------------TCAGCAGCA------GCAGC---CTCC-----------AGCGCCAGCAG---------CTAC------AGCGACTGC-
droRho1 scf7180000779334:988812-989003 - CAGCAGC------A---ACA------------------GCAGCAGCAGC---AG-CAACAGCAGCAG---------CAACAGCAGCA----CAACAG------------------------------CAGCAGCCA------------------------------------------------------------CAGCAGCA---------G------CAGCAACTGCAACTGCAGCA---------GCAAC--------------------AGCAA---------CTGCAACAGCAACAGCAACTGCAG------------------CAGCA------ACAGCAACTG-CAG---------------CAGCAACA------------GCAACACCAGGAGC---------TCTACCG------------CCAGCAG---------CAGC------AAC-ATCGCA
droBia1 scf7180000301754:451234-451441 + -AGCAGC------A---TCA------------------GCAGCACC------AGC-AGCAGCAGCAC---------CAACAGCATCAGCAGCATCAG---CA-------ACAT-----------------CA---------G-------------------------------------------CA--------GCACCAGCAACACCAGCAGCAGCAGCACCAACAGCACCAGCAGCA---------TCAGC--------------------AACAC---------CAGCAGCAT------CAGCAGCAG---CAACACCAGCAGCAC---CAGCAGCATC----------AG---------------CA---------------GCACCAACAGCA------TCAGC---AGCAACA------------CCAGCAG---------C---------ATCAGCAGCA
droTak1 scf7180000415141:5840-6048 - CAGCAAC------A---GAT------------------GCAGCAGATGC---AG-CTGCAGCAGCAG---------CAGCAGCAGCAACACCAGCAG---CA-------ACAG---------------------------------------------------------------------CAGAC--------GCACCAGCAGCAGCAGCAA------CTAAGCCAGCAGCAGCTGCA---------GCAGC--------------------AACAG---------CAGCAACTG------ACGCAGCAG------------------CAGCA---------------G-CTG---CAGCAA---CAGCAGC---AGCAATTCCAGCAGCAACACCA------GCAGC---AGCTCCA------------CCAGCAG---------C---------AGCAGCAGCA
droEug1 scf7180000409466:874389-874559 + -AGCACC------A---GCG--AGGCTCAGCAGTTTCAGCAGCAACAGC---AG-CAACAACAACAG---------GCCCAGC---------------------------------------------AACA--------------GGCGC------AAC------------A--------GCAG--CACCATCACCACCA------------G------CAACAAC------A---------------GCAGTT---GCA-----GCAGCAACAGCAA---------CAGGCGC------AGCAGCAGCAG------------------CAACA------ACAGCAGCAG-CAC---------------CAT------------------------------------------C---A------------CCACCAC---------C---------AT--------
dm3 chrX:12609044-12609274 - AAGCAGGCGGCTCA---TCT------------------GCAGCAGC------AG----CAGCAGCACCAGTCGCACCAACAGCAGCAGCAGCAGCAG---CA-------ACAG-----------------GA---------C--------C------AACGCACCAACCTGCATCTGCAAA-------TC------CATCACCA---------C------CACCAACAGCAGCAGCAGCA---------GCAGC--------------------AGCAG---------CAGCAACAACAACAGCAACAGCAG------------------CAACA------GCAGCAGCAG-CAA---------------AAACAGCA------------GCAACATCAT---ATGC------AGC---A------------GCAGCAG---------CAGCAAC---AACCTTT--G
droSim2 x:3447990-3448208 + -AGCAGC------T---GCA------------------GCAGCTGC------AAC-AGCTGCAACAA---------CCATCGCCC-----------------ATGTTGGG---CA------GACCAGCAGCAGCCACAGCAGAT-ATGCAG------AGA------------T-----ACG----------------TCCA------------GAGGATGCAGCAACAGCAACAGCAGCA---------GCAAC--------------------AGCAG---------CAGCAGCAGCAACAGCAGCAGCAG------------------CAACT------ACAGCAGCAG-CAA---------------CAGCAGCA------------TCAACACCAG------GAGT---TGTACCG------------CCAGCAG---------CAGC------TAC-ATCGCA
droSec2 scaffold_12:199174-199365 - AAGAAGC------G---CCACG---CCAAGGT------GCACCTGAAGC---AG-C-GC------AT---------CAGAAGGAGA-------------------------------------------------------------GGTGCGGGCGAAC------------A----------------------------GCA---------GCAG---CAACAG------CAGCAGCAGCAGCAGCAACAAC---AGCAGCAGC--------AGCAG---------CAGCAGTTGCAGCAGCAACAGGAG------------------CAACA------TCATTT---G-AGCCTGCAGCAA---CATCAGCAGTA------------CCAG---------------------C---A------------GCATCAC---------C-----------CTGCTGCA
droYak3 X:19447707-19447922 - -AGCGCC------A---GCA------------------GCAGCAGC------AGC-AGCAGCAACAG---------CAACAGCAGCAGCAGCAGCAGCAGCA-------GCAG-----------------CA----------------------------------------------------GCA--------GCAACAGCAGCAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCA---------GCAGC--------------------AGCAG---------CAGCAGCAGCAGCAGCAGCAGCAG------------------CAACA------GCAGCAGCAG-CAG---------------CAGCAGCA------------GCAACAACAG---------C---AACAACA------------GCAGCAG---------CAGCAACATCAACGGCTGC-
droEre2 scaffold_4784:3586564-3586768 + CAGCAGC------A---TCA------------------GCAGCAGCAGC---AG-CAGCATCAACAG---------CAGCAGCAGCAGCAACAGCAG---CA-------ACAG---------------------------------------------------------------------CAGCA--------ACAGCAGCAGCA------G------CAACAACAGCAACAGCAGCA---------GCAGC--------------------AACAG---------CAGCAGCATCAACAGCAACAGCAG------------------CAACA------GCAACAGCAG-CAG---------------CAGTTGCA------------GCCACAACAGCAGCTGCAGC---CGCAACA------------GCAGCAG---------C---------AGTTACAGC-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GAGCAGC------G---CCAGC-----------------CAGAGGC------AGC-AGCTGTAGCTG---------CCAATTTTCC----------------GCATCCGT---CA-----------GAGGCAGCCCCACCAGAACAGGGAG------AAC------------A-----TTT----------------TCCAGCA---------GGAG---CCCCAC------CTCCAGCAGCAGCA---GCAGC-----------------------------------AGCAGCAGGAACAGCAGGAGGAG------------------CAGGA------GCTACAGGTAGCTA---------------CAGTTCGA------------GTAACTCTGGGGGATCCAGC---AGCACCA------------CCAGCAA---------C---------CACTATTGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................GCAGCA---GCAGC-----------------------------------AGCAGCAGGAACA......................................................................................................................................................................2470.1410100000000
............................................................................................................................................................................................................................................................GC-----------------------------------AGCAGCAGGAACAGCA...................................................................................................................................................................18200.1020200000000
.................................................................................................................................................................................................................................C------CTCCAGCAGCAGCA---GCAGC-----------------------------------...................................................................................................................................................................................20180.0610000010000
.....................................................................................................................................................................................................................................................A---GCAGC-----------------------------------AGCAGCAGGAACA......................................................................................................................................................................19200.0510100000000
droPer2
GAGCAGC------G---CCAGC-----------------CAGAGGC------AGC-AGCTGCAGCTG---------CCAATTTTCC----------------GCATCCGC---CA-----------GAGGCAGCCCCACCAGAACAGGGAG------AAC------------A-----TTT----------------TCCAGCA---------GGAG---CCCCAC------CTCCAGCAGCAGCA---GGAAC--------------------AACAG---------CAGGAGC------AGGAGCAGGAG------------------CTAC---------AGCT--AG-CTA---------------CAGTTCGA------------GTAACTCTGGGGGATCCAGC---AGCACCA------------CCAGCAA---------C---------CACTATTGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................A-----------GAGGCAGCCCCACCAGAACAGGGAG------A......................................................................................................................................................................................................................................................................................................................2711.001000001
................................................................................................................................................................................................................................................................................................................................................................CTA---------------CAGTTCGA------------GTAACTCTGGGGG.................................................................2411.001100000
......................................................................................................................................................................................................................................................................................G---------CAGGAGC------AGGAGCAGGAG------------------CTAC---------A............................................................................................................................2411.001001000
..................................................................................................................................................................................................................................................................................................GGAGC------AGGAGCAGGAG------------------CT........................................................................................................................................18200.051010000
droWil2
GAGCCCT------G---CCA------------------CCAGCAGCAGC---AG-CAGCACTACCAT---------CAACATCAGCAGCACCAGCAG---CA-------GTAG-----------------CA----------------------------------------------------GCA--------ACATCAGCACTGCCAGTAGCAGCAGC---AG------GACCAGCA---------GCAGT--------------------AGCAG---------CAGCAGCACCAGCAGCAGTAGGAGCAACATCAGCAGCAGTAG---CA---------------G-CA---------A------CATC---AGCA------CTGCCAGCAGCA------GCAGC---AGCAACA------------TCAGCAG---------C---------AACATCAGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................TAGGAGCAACATCAGCAGCAGTAG---CA---------------G-....................................................................................................................2712.00200020
...................................................................................................................................................................................................ACATCAGCACTGCCAGTAGCA............................................................................................................................................................................................................................................................2111.00101000
..........................................................................................................................................................................................................................AGC---AG------GACCAGCA---------GCAGT--------------------AGCAG---------CA..................................................................................................................................................................................2511.00100010
..................................................................................................................................................................................................................................................................................................................TAGGAGCAACATCAGCAGCAGTAG---CA---------------G-C...................................................................................................................2811.00100010
.............................................................................AACATCAGCAGCACCAGCAG---CA-------GTA....................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.........................................................................................................................................................................................................................................................................................................CAGCAGCAGTAGGAGCAACATCAG...................................................................................................................................................2411.00100010
...........................................................ACTACCAT---------CAACATCAGCAG............................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
................................................................CAT---------CAACATCAGCAGCACCAG......................................................................................................................................................................................................................................................................................................................................................................................2120.50100010
..........................................................................................................................................................................................................................................................CAGT--------------------AGCAG---------CAGCAGCACCAGCAGCAG..................................................................................................................................................................2720.50101000
.........................................................................................................................................................................................CA--------ACATCAGCACTGCCAGTAGCAGT..........................................................................................................................................................................................................................................................2520.50100010
...................................................................................................................................................................................................................................................................................................................................................................................ATC---AGCA------CTGCCAGCAGCA------G..............................................................2020.50100010
..........................................................................................................................................................................................................................................................CAGT--------------------AGCAG---------CAGCAGCACCAG........................................................................................................................................................................2130.33101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------TCAGCAG---------C---------AACATCAG..2130.33100010
.....................................................................................................A-------GTAG-----------------CA----------------------------------------------------GCA--------ACATCAGC.........................................................................................................................................................................................................................................................................18170.18300030
.....................................................................................................................................................................................................................................................................................................................................AGTAG---CA---------------G-CA---------A------CATC---AGC........................................................................................18170.18300030
....................................................................................................CA-------GTAG-----------------CA----------------------------------------------------GCA--------ACATCAG..........................................................................................................................................................................................................................................................................18170.12200020
....................................................................................................................................................................................................................................................................................................................................CAGTAG---CA---------------G-CA---------A------CATC---AGCA------.................................................................................20170.12200020
....................................................................................................................................................................................................................................................................................................................................CAGTAG---CA---------------G-CA---------A------CATC---AG.........................................................................................18170.12200020
....................................................................................................CA-------GTAG-----------------CA----------------------------------------------------GCA--------ACATCAGCA........................................................................................................................................................................................................................................................................20170.12200020
...........................................................................................................................................................................................................................................................................................................................................................................A------CATC---AGCA------CTGCCAGCAGC......................................................................2090.11101000
.....................................................................................................................................................................................................................................................................................................................................AGTAG---CA---------------G-CA---------A------CATC---AGCA------CT...............................................................................2190.11101000
.....................................................................................................A-------GTAG-----------------CA----------------------------------------------------GCA--------ACATCAGCACT......................................................................................................................................................................................................................................................................2190.11101000
................................................................................................................................................................................................................................................................................................................................................................CA---------A------CATC---AGCA------CTGCCAGCAG.......................................................................2190.11100010
.................................................................................................................................................................................................................................................................................................................................................................A---------A------CATC---AGCA------CTGCCAGCAG.......................................................................2090.11100010
..............................................................................................................................................................................................................................................................................................................................CAGCAGCAGTAG---CA---------------G-CA---------A------CATC---AG.........................................................................................24100.10100010
...........................................................................................CAGCAG---CA-------GTAG-----------------CA----------------------------------------------------GCA--------ACATCAG..........................................................................................................................................................................................................................................................................24100.10100010
..............................................................................................................................................................................................................................................................................................................................................................G-CA---------A------CATC---AGCA------CTGCCAGCA........................................................................21100.10101000
.....................................................................................................A-------GTAG-----------------CA----------------------------------------------------GCA--------ACATCAGCA........................................................................................................................................................................................................................................................................19170.06100010
.....................................................................................................................................................................................................................................................................................................................................AGTAG---CA---------------G-CA---------A------CATC---AGCA------.................................................................................19170.06100010
..........................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------GCAGC---AGCAACA------------TCAGCAG---------....................24180.06100010
droVir3
-AGCAGC------A---GCA------------------GCAGCAGC------AGC-AGCAGCAGCAGTA--------ATTAGCTGCAGCAGCAGCAG---CA-------GCAGCAGCAGTA-------ATTAGCT------------------------------------------------------------GCAGCAGCA---------GCAG---CCGCAG------CAGCAGCA---------GCAGC--------------------CGCAG---------CAGCAGCAGCAGCCGCAGCAGCAG------------------CAGC---------AGCAGTAG-TA------A--TTAGCTGCAGC---------------AGCAACAGCC------GCAGC---AGC---A------------GCAGCAGCCGCAGCAGC---------A---GCCGC-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................CTGCAGC---------------AGCAACAGCC------GC.............................................................1950.201000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................CAG---------CAGCAGCAGCAGCCGCAG..................................................................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CAG------CAGCAGCA---------GCAGC--------------------CGCAG---------....................................................................................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGC---A------------GCAGCAGCCGCAG.......................21200.153003000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................GC--------------------CGCAG---------CAGCAGCAGCAGCCGC....................................................................................................................................................................2390.111001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................G---CCGCAG------CAGCAGCA---------GCAGC--------------------CGC...............................................................................................................................................................................................2390.111001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GCC------GCAGC---AGC---A------------GCAGCAGCCGC.........................2390.111001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------AGCAACAGCC------GCAGC---AG.....................................................21110.091000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AGC---------------AGCAACAGCC------GCAGC---AG.....................................................20140.071000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCCGCAGCAGC---------A---GCCG..21160.061001000000000000000000000000000000000000000000000000000000000000
...................A------------------GCAGCAGC------AGC-AGCAGCAGCAGTA--------.......................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCAGCAGC---------A---GCC...19200.051000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GCAGCAGCAGCCGCAGCAGCAG------------------CAGC---------A............................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................CAGCAGCAG---CA-------GCAGCAGCAGT............................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................C---AGC---A------------GCAGCAGCCGCAGCA.....................20200.051000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCAGCAGC---------A---GC....18200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AACAGCC------GCAGC---AGC---A------------GCAG................................20200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCCGCAGCA................................................................................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AACAGCC------GCAGC---AGC---A------------GCAGC...............................21200.051000000000000000000000000001000000000000000000000000000000000000
...CAGC------A---GCA------------------GCAGCAGC------AGC-AGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................29200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AGCAGCCGCAGCAGCAG------------------C.........................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CAGCAGCA---------GCAGC--------------------CGCAG---------CA..................................................................................................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................CAGCAGCA---------GCAG---CCGCAG------CA..........................................................................................................................................................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................A---------GCAG---CCGCAG------CAGCAGC.....................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................A---------GCAGC--------------------CGCAG---------CAGCAGC.............................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................CAGCAGCA---------GCAG---CCGCAG------CAG.........................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
droMoj3
GAGCAGC------A---GCA------------------GCAGCAGCAGC---AG-CAGTAGCAGCAG---------CAGCAGCAACAGCAGCAGCAG---CA-------ACAG---------------------------------------------------------------------CAGCA--------GCAGCAGCAACAGCAGCAG------CAGCAGCAGCAGCAGCAACA---------GCAGC--------------------AGCAG---------CAGCAACAGCAACAGCAACAGCAG------------------CAGGA------GCAGCAGCAG-CAG---------------CAGCAGCA------------ACAGCAGCAG---------GAGCAGCAGCAGCAGCAGCAACAGCAGCAG---------CAAC------TGAAACTGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAGCA..............................21200.102000020
........................................................................................................................................................................................GCA--------GCAGCAGCAACAGCAGCAG------C.......................................................................................................................................................................................................................................................23200.102200000
...............................................................................................AG---CA-------ACAG---------------------------------------------------------------------CAGCA--------GCAGCAGCAACAGC...................................................................................................................................................................................................................................................................27200.051100000
.................................................................................GCAACAGCAGCAGCAG---CA-------ACA....................................................................................................................................................................................................................................................................................................................................................................21200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................G---------GAGCAGCAGCAGCAGCAGCAACA....................................24200.051000010
.................GCA------------------GCAGCAGCAGC---AG-CAGTAGCAGCAG---------C.......................................................................................................................................................................................................................................................................................................................................................................................................29200.051000010
droGri2
CAGCAGC------G---GCA------------------GCGGCAGCGGC---AG-CAGCAGCAGCAG---------CAGCAGCAGCGGCAGCAGCAG---CA-------GCAG--------------------CA-------------------------------------------------GCA--------GCAGCAGCGGCAGCAGCAGCAG---CAGCAGCAGCAGCAGCAGCA---------GCAGC--------------------AG------------CAGCAGCAG---CATCAGCAGCGGCAGCAGCAGCAGCAGCGG----------------------CAG---------------CAGCAGCAGCA------GCAGCGGCAGCA------GCAGC---AGCAGCA------------GCAGCAG---------C---------GGCAGCAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................CA---------GCAGC--------------------AG------------CAGCAGCAG---C.......................................................................................................................................................................19200.25550
.............................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCA---------GCAGC--------------------A.................................................................................................................................................................................................25200.10220
........................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCGG----------------------CA..................................................................................................................20200.05101
droAna3
CAACAGC------T---CCA------------------GCAGCAGCAGC---AA-TTGCTGCAGCTT---------TCCATTCAACA-----------------------------------------------------------GGCGG------CGC------------A--------TCAC--CATCAACAGGAGCAGCATCGCCAACAGCAGCAACAACAAC------AGCAGCA---------GCAAC--------------------ACCAG---------CAGCAGCAACAACAGCAACAGCAC------------------CATCA------GC----------AACAGCAAGGC------CATCCACA------------GGCACCACC------GCCGC---AGCAGCA------------ACAGCAG---------C---------CACCGCCGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................GC------------A--------TCAC--CATCAACAGGAGCAGCATCGC....................................................................................................................................................................................................................................................................2812.002000020
............................................................................................................................................................................A--------TCAC--CATCAACAGGAGCAGCATCGCC...................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................................................................................................................................................................CATCCACA------------GGCACCACC------GC.............................................................1911.001010000
.................................................................................................................................................................................................CAGGAGCAGCATCGCCAACAGCA............................................................................................................................................................................................................................................................2311.001000001
...............................................................................ATTCAACA-----------------------------------------------------------GGCGG------CGC------------A--------TC.............................................................................................................................................................................................................................................................................................1911.001010000
............................................................................................................................................................................................................................................................................................................CAGCAACAGCAC------------------CATCA------GC----------AACAGC.............................................................................................................2511.001001000
.................................................................................................................................................................................................................................................................................................................................................................AACAGCAAGGC------CATCCACA------------GGCACCACC------...............................................................2811.001000001
...........................................................................................................................................................................................................................................................................................................................................................................C------CATCCACA------------GGCACCACC------GCCG...........................................................2211.001100000
..............................................................................................................................................................GC------------A--------TCAC--CATCAACAGGAG.............................................................................................................................................................................................................................................................................1911.001001000
.............................................................CAGCTT---------TCCATTCAACA-----------------------------------------------------------GGCGG------C......................................................................................................................................................................................................................................................................................................................2311.001010000
..............................................................................................................................................................................................CAACAGGAGCAGCATCGCCAACAGCA............................................................................................................................................................................................................................................................2611.001010000
................................................................................................................................................................................................................................................................................................................AACAGCAC------------------CATCA------GC----------AACAGCAAGGC------C.................................................................................................2711.001001000
..............................................................AGCTT---------TCCATTCAACA-----------------------------------------------------------GGCGG------C......................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................................................................................................CAACAGGAGCAGCATCGCCAACAGC.............................................................................................................................................................................................................................................................2511.001010000
......................................................................................................................................................................................................................................................................................................................................................C----------AACAGCAAGGC------CATCCACA------------G.............................................................................2111.001100000
...........................................................................................................................................................................................................ATCGCCAACAGCAGCAACAACAAC------AGC........................................................................................................................................................................................................................................2711.001010000
.................CCA------------------GCAGCAGCAGC---AA-TTGCC........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...................................................................................................................................................................................................................................................................................CCAG---------CAGCAGCAACAACAGCA...................................................................................................................................................................21150.132000002
........................................................................................................................................................................................................................GCAACAACAAC------AGCAGCA---------GCA........................................................................................................................................................................................................................21200.102020000
..................................................................................................................................................................................................................................C------AGCAGCA---------GCAAC--------------------ACCAG---------CAGCA...............................................................................................................................................................................23120.081000010
.....................................................................................................................................................................................................................GCAGCAACAACAAC------AGCAGCA---------GCAAC--------------------..................................................................................................................................................................................................26190.051010000
.................................................................................................................................................................................................................................................................................................AGCAGCAACAACAGCAACAGCA.............................................................................................................................................................22200.051010000
.....................................................................................................................................................................................................................GCAGCAACAACAAC------AGCA.......................................................................................................................................................................................................................................18200.051010000
..............................................................................................................................................................................................................................ACAAC------AGCAGCA---------GCAAC--------------------A.................................................................................................................................................................................................18200.051000100
.......................................................................................................................................................................................................................AGCAACAACAAC------AGCAGCA---------GC.........................................................................................................................................................................................................................21200.051010000
............................................................................................................................................................................................................................CAACAAC------AGCAGCA---------GCAAC--------------------A.................................................................................................................................................................................................20200.051000001
...........................................................................................................................................................................................................................ACAACAAC------AGCAGCA---------GCAAC--------------------A.................................................................................................................................................................................................21200.051100000
.....................................................................................................................................................................................................................................................................................AG---------CAGCAGCAACAACAGCAACAGC..............................................................................................................................................................24200.051010000
...................................................................................................................................................................................................................................................................................CCAG---------CAGCAGCAACAACA......................................................................................................................................................................18200.051100000
..................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAACAGC..............................................................................................................................................................20200.051010000
......................................................................................................................................................................................................................CAGCAACAACAAC------AGCAGCA---------GC.........................................................................................................................................................................................................................22200.051010000
........................................................................................................................................................................................................................GCAACAACAAC------AGCAGCA---------GC.........................................................................................................................................................................................................................20200.051010000
...........................................................................................................................................................................................................................ACAACAAC------AGCAGCA---------GCA........................................................................................................................................................................................................................18200.051001000
.................................................................................................................................................................................................................AACAGCAGCAACAACAAC------A..........................................................................................................................................................................................................................................19200.051001000
droBip1
CAGCAGC------G---GCA------------------GCAGC-CCAGCAACAG----CAGCTGCAG---------CAACAGCACCAG---CAGCAGCAACA-------CCAG-----------------CA----------------------------------------------------GCA--------ACAACAGCAGCAACATCAGCTGCAAC------AGCACCAGCAACA---------GTTACAAC-----------------ACCAG---------CAGCAGCAGCAACAGCAACAGCAC------------------CTGCA------CCAGCAACAG-CTT---------------CAGCCGCA------------CCAGCAGCA------AATGC---AACACCA------------CCAGCAG---------C---------AACAACAGCASizeHit CountTotal NormTotal
No Reads
droKik1
-AGCAGC------A---ACA------------------GCAGCAGC------TGC-AGCAACATCTA------------CAGCAGCAACAGCAGCAG------------------------------CATCATCTA-----------------------C------------A--------GCA-----------GCAGCA------------GCATCTAC------AGCAACAGCAGCA---------TCTAC--------------------AGCAG---------CAGC---------AGCAGCAGCAGCATCTACAGCAGCAGCAGCAGCA---GCAGC----------AG---------------C------A---------TCATCTCCAGCA------GCAGC---AGCAACA------------ACAGCAT---------T---------ACCCGCCGCASizeHit CountTotal NormTotal
No Reads
droFic1
GAGCGGC------C---GCA------------------GCAGCATAAGC---CG-CAGCAGCAGCCG---------CAGCAGCATAAG---CCGCAG------------------------------CAGCAGCCGCA----------------------------------------------GCA--------GCATAA------------GCCGCAGCAGCAGCCGCAGCAACATCA---------GCAGC--------------------AGGCG---------CAGCCGCATCAACGGCAGCCGGAG------------------CAACA------ACAACAGCAG-CCC---------------CAGCAGCA------------GCAACGGCGGCAGC---------GAC---A------------GCAGCAG---------CCGCAGCAACAAT------TSizeHit CountTotal NormTotal
No Reads
droEle1
-AGCAGC------ATTGGCC------------------GCAGCAGC------AT----CAGCCGCAG---------CAGCATCAGCCGCAGCAGCAT---CA-------GC-----------------ATCAGCC------------------------------------------------------------GCAGCAGCATCAGCATCAGCCGCAGCAGCATC------AGCCG--------------------------------------CAGCAGCATCAGCCGCAGCAGCATCAGCCGCAGCAG------------------CATCA---------------G-CCA---------------CAGCAGCA------------TCAGCAGCA------GCAGC---CTCC-----------AGCGCCAGCAG---------CTAC------AGCGACTGC-SizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAGC------A---ACA------------------GCAGCAGCAGC---AG-CAACAGCAGCAG---------CAACAGCAGCA----CAACAG------------------------------CAGCAGCCA------------------------------------------------------------CAGCAGCA---------G------CAGCAACTGCAACTGCAGCA---------GCAAC--------------------AGCAA---------CTGCAACAGCAACAGCAACTGCAG------------------CAGCA------ACAGCAACTG-CAG---------------CAGCAACA------------GCAACACCAGGAGC---------TCTACCG------------CCAGCAG---------CAGC------AAC-ATCGCASizeHit CountTotal NormTotal
No Reads
droBia1
-AGCAGC------A---TCA------------------GCAGCACC------AGC-AGCAGCAGCAC---------CAACAGCATCAGCAGCATCAG---CA-------ACAT-----------------CA---------G-------------------------------------------CA--------GCACCAGCAACACCAGCAGCAGCAGCACCAACAGCACCAGCAGCA---------TCAGC--------------------AACAC---------CAGCAGCAT------CAGCAGCAG---CAACACCAGCAGCAC---CAGCAGCATC----------AG---------------CA---------------GCACCAACAGCA------TCAGC---AGCAACA------------CCAGCAG---------C---------ATCAGCAGCASizeHit CountTotal NormTotal
No Reads
droTak1
CAGCAAC------A---GAT------------------GCAGCAGATGC---AG-CTGCAGCAGCAG---------CAGCAGCAGCAACACCAGCAG---CA-------ACAG---------------------------------------------------------------------CAGAC--------GCACCAGCAGCAGCAGCAA------CTAAGCCAGCAGCAGCTGCA---------GCAGC--------------------AACAG---------CAGCAACTG------ACGCAGCAG------------------CAGCA---------------G-CTG---CAGCAA---CAGCAGC---AGCAATTCCAGCAGCAACACCA------GCAGC---AGCTCCA------------CCAGCAG---------C---------AGCAGCAGCASizeHit CountTotal NormTotal
No Reads
droEug1
-AGCACC------A---GCG--AGGCTCAGCAGTTTCAGCAGCAACAGC---AG-CAACAACAACAG---------GCCCAGC---------------------------------------------AACA--------------GGCGC------AAC------------A--------GCAG--CACCATCACCACCA------------G------CAACAAC------A---------------GCAGTT---GCA-----GCAGCAACAGCAA---------CAGGCGC------AGCAGCAGCAG------------------CAACA------ACAGCAGCAG-CAC---------------CAT------------------------------------------C---A------------CCACCAC---------C---------AT--------SizeHit CountTotal NormTotal
No Reads
dm3
AAGCAGGCGGCTCA---TCT------------------GCAGCAGC------AG----CAGCAGCACCAGTCGCACCAACAGCAGCAGCAGCAGCAG---CA-------ACAG-----------------GA---------C--------C------AACGCACCAACCTGCATCTGCAAA-------TC------CATCACCA---------C------CACCAACAGCAGCAGCAGCA---------GCAGC--------------------AGCAG---------CAGCAACAACAACAGCAACAGCAG------------------CAACA------GCAGCAGCAG-CAA---------------AAACAGCA------------GCAACATCAT---ATGC------AGC---A------------GCAGCAG---------CAGCAAC---AACCTTT--GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................G---CA-------ACAG-----------------GA---------C--------C------AACGCACCAA.............................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TGCATCTGCAAA-------TC------CATCACCA---------C------........................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................G---CA-------ACAG-----------------GA---------C--------C------AACGCACCAACCTG.........................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AGCACCAGTCGCACCAACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................CCAACCTGCATCTGCAAA-------TC------CATCACC.........................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AG----CAGCAGCACCAGTCGCACCAACC...................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AACATCAT---ATGC------AGC---A------------GCAGCAG---------CAGC................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................G----CAGCAGCACCAGTCGCAC........................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GCAG---CA-------ACAG-----------------GA---------C--------C------AACGCACC...............................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................ACCAGTCGCACCAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TCGCACCAACAGCAGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CATCAT---ATGC------AGC---A------------GCAGCAG---------CA..................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................G----CAGCAGCACCAGTCGCACCA......................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000
..................................................................................................................................GA---------C--------C------AACGCACCAACCTGCAT......................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................C------AACGCACCAACCTGCATCTGCA.................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TGCATCTGCAAA-------TC------CATCACCA---------C------C.......................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CGGCTCA---TCT------------------GCAGCAGC------AG----CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................ACCTGCATCTGCAAA-------TC------CATCA...........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TCACCA---------C------CACCAACAGCAGCAG.........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................CGCACCAACCTGCATCTG...................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................ACGCACCAACCTGCATCTGC..................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCAGC------AG----CAGCAGCACCAGTCGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TGC------AGC---A------------GCAGCAG---------CAGCAAC---AA........23101.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GCACCAGTCGCACCAACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACATCAT---ATGC------AGC---A------------GCAGCAG---------CAGCAAC---..........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................ACAG-----------------GA---------C--------C------AACGCACCAACCTGCATC.....................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................ATCTGCAAA-------TC------CATCACCA---------C------C.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AACATCAT---ATGC------AGC---A------------GCAGCAG---------C...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CAGCAGCACCAGTCGCACCA......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
....................................................................AGTCGCACCAACAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................AGCAGCACCAGTCGCACCAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GCACCAGTCGCACCAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................GCAGCAG-CAA---------------AAACAGCA------------GCAACA........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................AA---------------AAACAGCA------------GCAACATCAT---ATGC------A......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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droSec2
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Female-body		V113
Male-body		V114
Embryo		V115
Head
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.......................................................................................................................................................................................................................................................CAACAAC---AGCAGCAGC--------AGCA..............................................................................................................................................................................................20200.0510010
droYak3
-AGCGCC------A---GCA------------------GCAGCAGC------AGC-AGCAGCAACAG---------CAACAGCAGCAGCAGCAGCAGCAGCA-------GCAG-----------------CA----------------------------------------------------GCA--------GCAACAGCAGCAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCA---------GCAGC--------------------AGCAG---------CAGCAGCAGCAGCAGCAGCAGCAG------------------CAACA------GCAGCAGCAG-CAG---------------CAGCAGCA------------GCAACAACAG---------C---AACAACA------------GCAGCAG---------CAGCAACATCAACGGCTGC-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................CAGCAGCAGCAGCA---------GCAGC--------------------AGCAG---------CAGC................................................................................................................................................................................28200.7515000000000015
...............................................................................CAGCAGCAGCAGCAGCAGCAGCA-------GCAG-----------------C.................................................................................................................................................................................................................................................................................................................................................28200.7515000000000015
............................................................................................................................................................................................................................................................................................................CAGCAGCAGCAG------------------CAACA------GCAGCAGC.......................................................................................................................25200.30600000000006
...........................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAGCA---------GCA........................................................................................................................................................................................................................24200.10202000000000
.........................................GCAGC------AGC-AGCAGCAACAG---------CAAC....................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000000000
...................................................................................................................................A----------------------------------------------------GCA--------GCAACAGCAGCAACAACAGCAGC..........................................................................................................................................................................................................................................................27150.07100100000000
...........................................................................................................................................................................................................AGCAACAACAGCAGCAGCAGCAACAGC..............................................................................................................................................................................................................................................27170.06100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACAG---------C---AACAACA------------GCAGCAG---------CAGC................24190.05100010000000
.............................................................................................GCAGCAGCA-------GCAG-----------------CA----------------------------------------------------GCA--------GCAAC............................................................................................................................................................................................................................................................................23200.05101000000000
..............................................................AACAG---------CAACAGCAGCAGCAGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
.....................................................GC-AGCAGCAACAG---------CAACAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
..........................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAG------------------CAACA------GCAGCA.........................................................................................................................25200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................GCAGCAG-CAG---------------CAGCAGCA------------GCAAC.........................................................................23200.05101000000000
....................................................................................................................................................................................................................................................................................................................GCAG------------------CAACA------GCAGCAGCAG-CAG---------------C.................................................................................................23200.05101000000000
.....................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAG------------------CAACA------GC.............................................................................................................................26200.05101000000000
..................................................................................................................................................................................................................ACAGCAGCAGCAGCAACAGCAGCA..........................................................................................................................................................................................................................................24200.05101000000000
...............................................................ACAG---------CAACAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
............................................................GCAACAG---------CAACAGCAGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
.................GCA------------------GCAGCAGC------AGC-AGCAGCAACAG---------C.......................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
....................................................................................................................................................................................................................................................................................................................GCAG------------------CAACA------GCAGCAGCAG-CAG---------------CA................................................................................................24200.05100000010000
.................GCA------------------GCAGCAGC------AGC-AGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
........................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAG.........................................................................................................................................................................................................................................19200.05101000000000
.....................................................................................................................................................................................................AACAGCAGCAACAACAGCAGCAGC.......................................................................................................................................................................................................................................................24200.05101000000000
..................................................................................................AGCA-------GCAG-----------------CA----------------------------------------------------GCA--------GCAACAGCAGCA.....................................................................................................................................................................................................................................................................25200.05101000000000
........................................................AGCAGCAACAG---------CAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
.............................................................................................GCAGCAGCA-------GCAG-----------------CA----------------------------------------------------GCA--------GCAACAGC.........................................................................................................................................................................................................................................................................26200.05101000000000
...............................................................ACAG---------CAACAGCAGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
.....................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAG------------------CAAC......................................................................................................................................23200.05101000000000
droEre2
CAGCAGC------A---TCA------------------GCAGCAGCAGC---AG-CAGCATCAACAG---------CAGCAGCAGCAGCAACAGCAG---CA-------ACAG---------------------------------------------------------------------CAGCA--------ACAGCAGCAGCA------G------CAACAACAGCAACAGCAGCA---------GCAGC--------------------AACAG---------CAGCAGCATCAACAGCAACAGCAG------------------CAACA------GCAACAGCAG-CAG---------------CAGTTGCA------------GCCACAACAGCAGCTGCAGC---CGCAACA------------GCAGCAG---------C---------AGTTACAGC-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................CACAACAGCAGCTGCAGC---CGCA...................................................2211.0010000100
...........................................................................................................................................................................................................................................................................................................................................AACA------GCAACAGCAG-CAG---------------CAGTT.............................................................................................2220.5010001000
............................................................................................................................................................................................................................................................................................................................................ACA------GCAACAGCAG-CAG---------------CAGTT.............................................................................................2120.5010000010
.................................................................................................................................................................................................................................................................................................AGCAGCATCAACAGCAACA................................................................................................................................................................1930.3310000100
.....................................................G-CAGCATCAACAG---------CAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................2640.2510100000
................................................................................................................G---------------------------------------------------------------------CAGCA--------ACAGCAGCAGCA------G------C.......................................................................................................................................................................................................................................................20200.1531000020
.....................................................................................................A-------ACAG---------------------------------------------------------------------CAGCA--------ACAGCAGCA........................................................................................................................................................................................................................................................................19200.1020002000
..............................................................................................CAG---CA-------ACAG---------------------------------------------------------------------CAGCA--------ACAGCAGCA........................................................................................................................................................................................................................................................................23200.1021000100
...........................................................................................................................................................................................................................................................................................................................................AACA------GCAACAGCAG-CAG---------------C.................................................................................................18200.1020000020
............................................................................................................................................................................................................GCA------G------CAACAACAGCAACAGCAGCA---------...........................................................................................................................................................................................................................24120.0810000010
........................................AGCAGCAGC---AG-CAGCATCAACA..................................................................................................................................................................................................................................................................................................................................................................................................................22120.0811000000
..........................................................CATCAACAG---------CAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................22160.0610001000
..............................................................................................................................................................................................................A------G------CAACAACAGCAACAGCAGCA---------...........................................................................................................................................................................................................................22160.0610000010
..............................................................................................................................................................................................................................................................................................................................................A------GCAACAGCAG-CAG---------------CAGT..............................................................................................18190.0511000000
CAGCAGC------A---TCA------------------GCAGCAGCAGC---................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010
.....................................................................................................................................................................................................................G------CAACAACAGCAACAGCAGC.....................................................................................................................................................................................................................................20200.0510100000
....................................................................................GCAGCAACAGCAG---CA-------ACAG---------------------------------------------------------------------CAGCA--------.................................................................................................................................................................................................................................................................................24200.0510000100
...............................................................................................AG---CA-------ACAG---------------------------------------------------------------------CAGCA--------ACAGCAGCAGCA------G------C.......................................................................................................................................................................................................................................................27200.0511000000
...............................................................................................AG---CA-------ACAG---------------------------------------------------------------------CAGCA--------ACAGCA...........................................................................................................................................................................................................................................................................19200.0510000100
.............................................................................................................................................................................................................................................................................................................AGCAACAGCAG------------------CAACA------GCA............................................................................................................................19200.0510000100
..............................................................................................................................................................................................................................ACAACAGCAACAGCAGCA---------GC.........................................................................................................................................................................................................................20200.0511000000
.......................................................................................................................................................................................................................................ACAGCAGCA---------GCAGC--------------------AACAG---------C...................................................................................................................................................................................20200.0511000000
.....................................................................................................................................................................................................................................CAACAGCAGCA---------GCAGC--------------------AACAG---------CA..................................................................................................................................................................................23200.0510000010
......................................................................................................................................................................................................................................AACAGCAGCA---------GCAGC--------------------AACAG---------CAGCA...............................................................................................................................................................................25200.0510001000
...........................................................ATCAACAG---------CAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
..............................................................................GCAGCAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................18200.0511000000
............................................................................................AGCAG---CA-------ACAG---------------------------------------------------------------------CAGCA--------ACAGCAGCAG.......................................................................................................................................................................................................................................................................26200.0511000000
.............................................................................................................................................................................................................................................GCA---------GCAGC--------------------AACAG---------CAGCAGCA............................................................................................................................................................................21200.0510001000
............................................................................................................................................................................................................................CAACAACAGCAACAGCAGCA---------G..........................................................................................................................................................................................................................21200.0510001000
.......................................................................................................................................................................................AGCA--------ACAGCAGCAGCA------G------CA......................................................................................................................................................................................................................................................19200.0510001000
..........................................................CATCAACAG---------CAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010
.................................................................................................................................................................................................................................................................................................................ACAGCAG------------------CAACA------GCAACAGC.......................................................................................................................20200.0510100000
................................................................................AGCAGCAGCAACAGCAG---CA-------.......................................................................................................................................................................................................................................................................................................................................................................19200.0510001000
.............................................................................................................................................................................................................................................GCA---------GCAGC--------------------AACAG---------CAGCAGC.............................................................................................................................................................................20200.0511000000
......................................................................................................................................................................................................................................AACAGCAGCA---------GCAGC--------------------AACAG---------CAGC................................................................................................................................................................................24200.0510000010
............................................................................................................................................................................................................................CAACAACAGCAACAGCAGCA---------...........................................................................................................................................................................................................................20200.0510100000
.................................................................AG---------CAGCAGCAGCAGCAACAGCAG---C...............................................................................................................................................................................................................................................................................................................................................................................24200.0510100000
..GCAGC------A---TCA------------------GCAGCAGCAGC---A...............................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
................................................................................................................G---------------------------------------------------------------------CAGCA--------ACAGCAGCAGCA------G------CAA.....................................................................................................................................................................................................................................................22200.0511000000
......C------A---TCA------------------GCAGCAGCAGC---AG-CAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510001000
.....GC------A---TCA------------------GCAGCAGCAGC---AG-CA...........................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
........................................................................................................................................................................................GCA--------ACAGCAGCAGCA------G------CAACA...................................................................................................................................................................................................................................................21200.0510000010
..................................................................................................................................................................................................................................CAGCAACAGCAGCA---------GCAGC--------------------..................................................................................................................................................................................................19200.0510100000
............................................................................................................................................................................................................................CAACAACAGCAACAGCAGC.....................................................................................................................................................................................................................................19200.0511000000
.............................................................................................................ACAG---------------------------------------------------------------------CAGCA--------ACAGCAGCA........................................................................................................................................................................................................................................................................18200.0510000100
.....................................................................................CAGCAACAGCAG---CA-------ACAG---------------------------------------------------------------------CAGCA--------.................................................................................................................................................................................................................................................................................23200.0511000000
........................................................................................................................................................................................................................................CAGCAGCA---------GCAGC--------------------AACAG---------C...................................................................................................................................................................................19200.0510000010
......................................................................................................................................................................................CAGCA--------ACAGCAGCAGCA------G------CAAC....................................................................................................................................................................................................................................................22200.0510100000
...............................................................................................................................................................................................................................CAACAGCAACAGCAGCA---------GCAGC--------------------A.................................................................................................................................................................................................23200.0510001000

Generated: 05/18/2015 at 04:56 AM