ID:

dps_2546

 Coordinate:

XL_group1a:6541441-6541509 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.9 -7.1

Flybase annnotation

CDS [Dpse\GA15909-cds]; exon [dpse_GLEANR_10789:5]; exon [dpse_GLEANR_10789:4]; CDS [Dpse\GA15909-cds]; intron [Dpse\GA15909-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
star
  1. XL_group1e:5883241-5883259 -
  2. XL_group1e:8973767-8973785 -
  3. XL_group1e:10291203-10291221 -
  4. XR_group3a:1226326-1226344 -
  5. XR_group5:292266-292284 -
  6. 3:12081245-12081263 -
  7. 2:13291398-13291416 -
  8. 4_group1:5098558-5098576 -
  9. XR_group6:88222-88240 -
  10. XR_group6:1168282-1168300 -
  11. XR_group6:1511784-1511802 -
  12. XR_group6:2415323-2415341 -
  13. XR_group6:6922193-6922211 -
  14. XR_group6:11593493-11593511 -
  15. XR_group6:11605039-11605057 -
  16. XR_group6:12556108-12556126 -
  17. XR_group6:12837056-12837074 -
  18. XL_group1a:3378162-3378180 -
  19. XL_group1a:3700716-3700734 -
  20. dps_2546  XL_group1a:6541479-6541497 -

Sense Strand Reads

##################################################---------------------------------------------------------------------##################################################
CCAGCTGGGGGCCACGCCAGCGGGCACAGCCACCCACCAGCAGCAGCAGCATCATCATCAGCAGCAGCAGCAGCAGCATCACCACCACCAGCAGCAGCATCAGATTCAGGTGCAAGTACAGCAACAACAGCATGTAAATCTCAGCCAGAGCAACTCCAGCACCGTCACC
**************************************************************.((..........(((((..........((....))..........)))))..)).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343916
embryo
 M059
embryo
 M040
female body
 V112
male body
.............................................................................................GCAGCATCAGATTCAGGTGCAAGTA................................................... 25 0 1 1.00 1 1 0 0 0
......................................................................CATCAGCATCACAACCACCAGCAGC.......................................................................... 25 2 2 0.50 1 0 1 0 0
.............................................................................ATCACCACCACCAGCAGC.......................................................................... 18 0 6 0.17 1 0 0 1 0
.................................................CATCATCATCAGCAGCAGCAGCAG................................................................................................ 24 0 12 0.08 1 0 0 0 1
...........................................................................................CCGCAGCATCGGATTAAGG........................................................... 19 3 20 0.05 1 0 0 1 0
..............................................................AGCAGCAGCAGCAGCATCA........................................................................................ 19 0 20 0.05 1 0 0 1 0
....................................................CATCATCAGCAGCAGCAGCAG................................................................................................ 21 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

GGTCGACCCCCGGTGCGGTCGCCCGTGTCGGTGGGTGGTCGTCGTCGTCGTAGTAGTAGTCGTCGTCGTCGTCGTCGTAGTGGTGGTGGTCGTCGTCGTAGTCTAAGTCCACGTTCATGTCGTTGTTGTCGTACATTTAGAGTCGGTCTCGTTGAGGTCGTGGCAGTGG
***************************************************.((..........(((((..........((....))..........)))))..)).************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V112
male body		 M040
female body
.........................................................................................................................GTTGTTGACGTAGATTTAG............................. 19 2 5 0.20 1 1 0
.....AGGCCCGGTGCGGTTGCCCG................................................................................................................................................ 20 3 13 0.08 1 0 1
..........................................................................................................................TTGTTGACGTAGATTTAGGG........................... 20 3 19 0.05 1 0 1
......................................................................................................................................................GTTTAGGTGGTGCCAGTGG 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:6541391-6541559 - dps_2546 CCAGCT---GGGGGC----CACGCCAGCGGGCACAGCCAC---------------CCACCAG------CAGCAGCAGCA-----TC--------ATCATCAGCAGCA---GCAG------------------------------------CAGCA------GCATCA------CCACCACCAGCA---------GCAGCATCA------G------ATTCAGGTGC---------------A---AGTACAGCAACAACAGC----AT------------------GTAAATC-TC---AGCCAGAGCAACTCCAGCACCGTCACC
droPer2 scaffold_25:771879-772050 + dpe_1259 CCAGCT---GGGGGC----CACGCCCGCGGGCACAGCCAC---------------CCACCAG------CAGCAGCAGCA-----TC--------ATCATCAGC------------------------------AGCAGCAGC---------AGCAGC---AGCATCA------CCACCACCAGCA---------GCAGCATCA------G------ATTCAGGTGC---------------A---AGTACAGCAACAACAGC----AT------------------GTAAATCT-G---AGCCAGAGCAACTCCAGCACCGTCACC
droWil2 scf2_1100000003625:855-1018 + GCAGC--------------------------AA-CA----A---------------------CAACAG--------------CAGCAACAACAA--------CA---GCAGCAGCAACAACAGCAACAGG---AACAACAAC---------AGCAGC---------AGCAACAACAACAACAGCA---------GCAGCAACTGCAACAA------------CAGCAGC------------AGCAACAG-------------CAACAACA-------A--------CAACATCAGC---AGCAACAGCAACAACAGCAGCAACAGC
droVir3 scaffold_12928:2231190-2231347 - GCAGC--------------------------AG-CA----G---------------------CATCAC--------------CAGCAGCAGCAG--------CA---GCATCACCAGCAGCAGCACCAGC---AGCAGCAGC---------TGCAGC---------TGCAGCAGCATC---ATCAC------CAGCAGCAACA------G------------CAGCATC------------AGCACCTC-------------CAGCAACA-------G--------CAGCAGCAAC---AGCAGCAGCAGCAGCAGCACCTCCAGC
droMoj3 scaffold_6680:6538398-6538561 + ACAGC--------------------------AG-GA----G---------------------CAGCAA--------------CAGCAGCAGCAA--------CA---GCAGCAACAGCAGCAGCAGCAGC---AACAACAGC---------AACAGC---------AACAGCAGCAGC---AGCAG------CAACAGCAGCAGCAGCAG------------CAGCAGC------------AGCAACAG-------------CAGCAGCA-------G--------TAGCAGCAAC---AGCAGCAGCAGCAGCAGCAACAGCAGC
droGri2 scaffold_14828:10821-10984 - GCAGC--------------------------AG-CA----G---------------------CAGCAG--------------CAGCAGCAGCAG--------CA---GCAGCAGCAGCAGCAGCAGCAGC---AGCAGCAGC---------AGCAGC---------AGCAGCAGCAGC---AGCAG------CAGCAGCAGCAGCAGCAG------------CAGCAGC------------AGCAGCAG-------------CAGCAGCA-------G--------CAGCAGTTAA---AACAGCAGCAGCATCAGCAGCAGCAAA
droAna3 scaffold_12929:1884815-1884981 + GCAAC--------------------------AG-CA----ACCACAACAGACCACACACCTG------CAGCAGCAGCA-----GC--------AACAGCAACAGCA---ACAG------------CAGC---AGCATCCGCAGC---------------------A---------TC---ATCTG------CAGCAGCAACA------GCAACAGCAC---CACCACC------------AGC----------------------AACAACAACAC-CAT-----GCCCAGCAGC---AGCAACAGCAACAGCAGCAGCAGCAGC
droBip1 scf7180000396543:345613-345767 + GCAAC--------------------------CC-CA----A------CAGACCGCACACCTG------CAACAGCAACA-----TC--------AGCAGCAGCAGCA---GCAA---------------C---AGCAGCAGCAGC---------------------ACCACCTGC------AGCA------------GCAGCA------GCAGCAGC---ACCACCACC------------AGC---------AACAACAAC----AA------------------CAACATCATG---CCCAGCAGCAGCAGCAGCAACACCACC
droKik1 scf7180000302809:418-579 + CCAGC--------------------------AG-CA----G---------------------CACCAG--------------CAGCAGCAGCAC--------CA---GCAGCAGCAGCTCCAGCAGCAGC---AGCACCAGC---------AGCAGC---------ACCACCAGCAGC---AGCAG------CACCAGCAGCAGCAGCAC------------CAGCAGC------------AGCAGCAC-------------CAGCAGCA-------G--------CAGCAC--AC---AGCAGCAGCAGCAACAGCAGCAGCACC
droFic1 scf7180000453829:1092985-1093142 + GCAGC--------------------------AG-CA----G---------------------CAGCAA--------------CGGCAGCAACTG--------CA---GCAGCAGCAACTGCAGCAGCAAC---AACAGCAGC---------AGCAAC---------AACAGCAGCAAC---AACAG------CAGCAGCAACA------G------C------AACAGC------------AGCAACTA-------------CAACAACA-------A--------CAGCAGCAAC---AGCAGCAGCAACAACAGCAACAGCAGC
droEle1 scf7180000491356:120861-121032 - CCAGCC---GCCGGCGGCATTCAC-----------------------------------CAG------CAACAG-----CAGCAACA--------CCAGCAACAGCA---GCAA------------CATC---AGCAACAGCAGCAACATCTGCAGCA---GCAGCA------ACATCAGCAACA---------GCAGCAAC------AC------------CATCAGC------------AGCAACAA-------------CAGCAGCA-------A--------CACCATCAGC---AGCAGCAGCAACACCATCAGCAGCAGC
droRho1 scf7180000763611:53557-53715 - CCATG-----ATGGA----CTCGCC----GCCGCAGCCAT---------------CT---------------------------------------------AC---GCAACAGCAATT---GCCATCGG---CCCAGCAGC---------AGCAGC---------AGTCTCAGCAACAACAACA---------GCAGCAACA------G------CAACAGCAGCAGC------------AGC---AA------CAA-------CAGGC-------G--------GTGGTGCTGC---AGCAGGTGCAACAGCAGCAGAAGCACC
droBia1 scf7180000302402:4220255-4220418 + CCAGC--------------------------TA-CA----A---------------------GCGCTA--------------CAGCAGCAGCAG--------CA---ACAACAGCAGCAGCAGCAACAAC---AGCAGCAGCAGCAACAACAGCAGC------------------AGC---AGCAA------CAACAGCAACAGCAG---------C------AGCAAG---------TGCAGCAACTG-------------CAACAAGC-------A--------CAGGAGCAGC---AGCCACTGCATCAGCAGCAGCAGCAAC
droTak1 scf7180000415863:485799-485959 + CCTGCA---GTTGTC----CA-TC----------CA----G------CAGGCGGCTCACCAT------CATCAGCAGGA-----GC--------AGCATCGCCAGCA---GCAGCAGCA---------GC---AACACCAGCAGCAGC---------------------------------AACA------------GCAGCA------GCAGCAGC---ATCACCAGC------------AGC---AA------CAG-------CAG------------------GGTCATCCTC---AGGCGCCGCCGCCACAGCAGCAACAGC
droEug1 scf7180000409061:49467-49653 - TCCGCC---GGCGGC---ATACAC-----------------------------------CAG------CAGCAT-----CAGCAACA--------GCAGCACCAGCA---GCAACAACA---------GC---AACAACATCAGCAACAACAGCATCAGCAGCAACA------ACACCACCAGCA---------GCAGCAACA------C------------CACCAACAGCAGCAACACCACCAACAG-------------CAACAACA-------T--------CTACAACAGC---AGCAGCAGCAACACCAGCAGCAGCAGC
dm3 chrX:5647021-5647190 + GCAGC--------------------------AG-CA----A---------------------CACCAGCAGCAC-----CAGCAGCAGCAAC--------ACCA---GCAGCAGCAGCA---------CCAGCAACACCAGCAGCAACAGCAGCAGCA------ACA------CCAACATCAGCA---------GCAGCAACA------G------CAACACCTTC---------------AGC----------------------AGCAGCAACAC-CA-CCAGC----TGCAGC---AGCAACAGCAGCAGCAGCAGCATCAAC
droSim2 3l:9459945-9460118 + ACTG------GCAGC----------------AG-CA----C---------------------CAGCAA--------------CATCACCACCAA--------CA---GCAGCAGCAGCAGCATCAACAGC---AACAGCAGCAGCAACAGCATCAGCA------GCA------GCAGCAGCAGCA---------ACATCAACA------G------CAGCAACATC---------------AAC----------------------AGCAGCAACAC-CA-ACAGC----AGCAACAGCAACAGAAGCAGCTCCAGCAGCAGCAGC
droSec2 scaffold_4:1116978-1117148 - CCGCCG---GCGGC----ATTCAC-----------------------------------CAG------CAGCAC-----CAGCAGCAGCAAC--------ACCA---GCACCAGCAGCA---------GC---AGCACCAGCAGCAACAGCAGCAGCA------ACA------CCAACATCAGCA---------GCAGCAACA------G------CAGCACCTTC---------------AGC----------------------AGCAGCAACAC-CA-CCAGC----TGCAGC---AGCAACAGCAGCAGCAGCAGCATCAAC
droYak3 X:19163342-19163503 + CGCCCAGTCGTGAGC----CACGCA----GCAG-CTCCCC---------------TCCCCTG------CAGCAG-----------CAGCAAT--ATCAGCAGCAGCA---GCAG------------CAGC---AGCAGCAGCAGCAACAGCAGCAGC------------------------AGCA---------GCAGCAACA------G------C------------------------A---ACAGCAGCAACAG----------------------------CAGCTGCAAC---AGCAACAGCAACAGCTGCAACAGCAAC
droEre2 scaffold_4784:4418044-4418205 - CCA-C--------------------------GG-CA----G------CAG------------CAGCGG--------------CA-CAGCTCGTG--------CA---GTTGCAGCAGCAGCACCAACAGC---AGCAGCAGCAGCTACAGCAGCAAC------------------AGCAGCAGCAGCAGCTACAGCAGCAAC------AG------------CAGCTGC------------AGC-------------------AGCAA----------CA-GCAGC----TGCAAC---AGCAACAGCAGCTGCAACTCAATCAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCAGCT---GGGGGC----CACGCCAGCGGGCACAGCCAC---------------CCACCAG------CAGCAGCAGCA-----TC--------ATCATCAGCAGCA---GCAG------------------------------------CAGCA------GCATCA------CCACCACCAGCA---------GCAGCATCA------G------ATTCAGGTGC---------------A---AGTACAGCAACAACAGC----AT------------------GTAAATC-TC---AGCCAGAGCAACTCCAGCACCGTCACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................GCAGCATCA------G------ATTCAGGTGC---------------A---AGTA.............................................................................2511.0010000100000
...................................................................................................................................................................ATCA------CCACCACCAGCA---------GC..................................................................................................................................1860.1710100000000
.............................................................................CA-----TC--------ATCATCAGCAGCA---GCAG------------------------------------CAG.............................................................................................................................................................................24120.0810000001000
.......................................................................................................AGCA---GCAG------------------------------------CAGCA------GCATCA------.........................................................................................................................................................19200.0510100000000
.....................................................................................C--------ATCATCAGCAGCA---GCAG------------------------------------CAG.............................................................................................................................................................................21200.0510100000000
droPer2
CCAGCT---GGGGGC----CACGCCCGCGGGCACAGCCAC---------------CCACCAG------CAGCAGCAGCA-----TC--------ATCATCAGC------------------------------AGCAGCAGC---------AGCAGC---AGCATCA------CCACCACCAGCA---------GCAGCATCA------G------ATTCAGGTGC---------------A---AGTACAGCAACAACAGC----AT------------------GTAAATCT-G---AGCCAGAGCAACTCCAGCACCGTCACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................ATCATCAGC------------------------------AGCAGCAGC---------AGC............................................................................................................................................................................21200.051010000
droWil2
GCAGC--------------------------AA-CA----A---------------------CAACAG--------------CAGCAACAACAA--------CA---GCAGCAGCAACAACAGCAACAGG---AACAACAAC---------AGCAGC---------AGCAACAACAACAACAGCA---------GCAGCAACTGCAACAA------------CAGCAGC------------AGCAACAG-------------CAACAACA-------A--------CAACATCAGC---AGCAACAGCAACAACAGCAGCAACAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................AACAACAAC---------AGCAGC---------AGC.............................................................................................................................................................18200.45900090
.........................................................................................................................................................................AACAACAACAACAGCA---------GCA.................................................................................................................................19200.25500050
...................................................................................................................................................................................................................................................................................................TCAGC---AGCAACAGCAACAACAGCAG.......25130.15201010
....C--------------------------AA-CA----A---------------------CAACAG--------------CAGCAACA............................................................................................................................................................................................................................................20200.15300030
....C--------------------------AA-CA----A---------------------CAACAG--------------CAGCAAC.............................................................................................................................................................................................................................................19200.15300030
........................................A---------------------CAACAG--------------CAGCAACAACA.........................................................................................................................................................................................................................................18200.15300030
............................................................................................................................................................................AACAACAACAGCA---------GCAGCAAC............................................................................................................................21200.15300030
.....................................................................................CAACAACAA--------CA---GCAGCAGCAAC................................................................................................................................................................................................................22200.10200020
............................................................................................................................................................................................................CAACAA------------CAGCAGC------------AGCAACAG-------------CAA.............................................................24200.10202000
.....................................................................................CAACAACAA--------CA---GCAGCAGCAACA...............................................................................................................................................................................................................23200.10200011
..........................................................................................................................................................................ACAACAACAACAGCA---------GCAGCAAC............................................................................................................................23200.10200020
........................................................................................................................................................................CAACAACAACAACAGCA---------GCAGC...............................................................................................................................22200.10200200
...........................................................................................................................................................GC---------AGCAACAACAACAACAGC..............................................................................................................................................20200.10202000
...............................................................................................................................................................................................................................................................................................AACATCAGC---AGCAACAGCAACAA.............23170.06101000
...........................................................................................................................................................................................................................................................................ACA-------A--------CAACATCAGC---AGCAACAGC..................23180.06100100
.......................................................................................................................................................................................................................................................................AACAACA-------A--------CAACATCAGC---AGCAACA....................25190.05101000
.......................................................................................................................................................................................................................................................................AACAACA-------A--------CAACATCAGC---AGCAAC.....................24190.05100010
........................................................................................................................................................GCAGC---------AGCAACAACAACAACAGC..............................................................................................................................................23200.05101000
......................................................................................................................................................................AGCAACAACAACAACAGCA---------GCAGCAAC............................................................................................................................27200.05100010
............................................................................................AA--------CA---GCAGCAGCAACAACAGCA.........................................................................................................................................................................................................22200.05101000
..AGC--------------------------AA-CA----A---------------------CAACAG--------------CAGCAACAA...........................................................................................................................................................................................................................................23200.05100010
.......................................................................................................A---GCAGCAGCAACAACAGCAACA......................................................................................................................................................................................................22200.05100010
.............................................................................................................................................................................................................................................................................A-------A--------CAACATCAGC---AGCAAC.....................18200.05100010
........................................................................................CAACAA--------CA---GCAGCAGCAACAACAG...........................................................................................................................................................................................................24200.05101000
......................................................................................AACAACAA--------CA---GCAGCAGCAA.................................................................................................................................................................................................................20200.05100100
....................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAACAGC18200.05100010
...................................................................G--------------CAGCAACAACAA--------CA---GCAGCAGCA..................................................................................................................................................................................................................24200.05100010
.................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCAACAG.20200.05100001
............................................................................................................................................................C---------AGCAACAACAACAACAGCA---------GCAGC...............................................................................................................................25200.05100001
...............................................................................................................................................................................................................CAA------------CAGCAGC------------AGCAACAG-------------CA..............................................................20200.05101000
.....................................................................................................................................................................................................................................................................................................AGC---AGCAACAGCAACAACAGCAGC......24200.05101000
.......................................................................................................................................................................GCAACAACAACAACAGCA---------GCAGC...............................................................................................................................23200.05100010
..................................CA----A---------------------CAACAG--------------CAGCAACAACAA--------CA---...........................................................................................................................................................................................................................23200.05100001
...............................................................................................................................................................................................................................AGCAGC------------AGCAACAG-------------CAACAACA-------A--------CA......................................25200.05100010
.............................................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGC......19200.05100010
.............................................................................................................................................................................................................AACAA------------CAGCAGC------------AGCAACAG-------------CA..............................................................22200.05100010
.........................................................................................................................................................................................................................................................................CAACA-------A--------CAACATCAGC---AGCAAC.....................22200.05100010
....................................................................................GCAACAACAA--------CA---GCAGCAGCAACA...............................................................................................................................................................................................................24200.05100010
....C--------------------------AA-CA----A---------------------CAACAG--------------CAGCAACAACAA--------CA---...........................................................................................................................................................................................................................26200.05100010
..................................................................AG--------------CAGCAACAACAA--------CA---GCAGCAGCAA.................................................................................................................................................................................................................26200.05101000
.........................................................................................................................................ACAAC---------AGCAGC---------AGCAACAA........................................................................................................................................................19200.05100010
...................................A----A---------------------CAACAG--------------CAGCAACAACAA--------C...............................................................................................................................................................................................................................21200.05100010
............................................................................................................................................................................................................................................................................CA-------A--------CAACATCAGC---AGCAACA....................20200.05100010
............................................................................................................................................................................................................................................................................CA-------A--------CAACATCAGC---AGCAA......................18200.05100010
..........................................................................................ACAA--------CA---GCAGCAGCAACAACA............................................................................................................................................................................................................21200.05101000
...............................AA-CA----A---------------------CAACAG--------------CAGCAACAA...........................................................................................................................................................................................................................................20200.05100010
...........................................................................................................................................................................................................................................................................................................AGCAACAGCAACAACAGCAGCA.....22200.05101000
.......................................................................................................................................................................................................................................................................AACAACA-------A--------CAACATCAGC---AGC........................21200.05100010
................................................................ACAG--------------CAGCAACAACAA--------CA---GCAG.......................................................................................................................................................................................................................22200.05101000
.................................................................................................................................................................................................................................................................................................CATCAGC---AGCAACAGCAACA..............20200.05100010
.................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCAACAGC21200.05101000
.......................................................................................................................................................................................................................................................................AACAACA-------A--------CAACATCAGC---A..........................19200.05100010
.............................................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGCAACA..23200.05100010
............................................................................................................................................................................................................CAACAA------------CAGCAGC------------AGCAACAG-------------................................................................21200.05100010
.........................................................................................................................................................................................................................................................................CAACA-------A--------CAACATCAGC---AGCA.......................20200.05100010
...........................................................................................................................................................GC---------AGCAACAACAACAACAGCA---------GCAGCA..............................................................................................................................27200.05100010
.................................................................................................................................................................................................................A------------CAGCAGC------------AGCAACAG-------------CAACAAC.........................................................23200.05100010
.............................................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGCAA....21200.05100100
............................................................................................................................................................................AACAACAACAGCA---------GCAGCA..............................................................................................................................19200.05100001
...........................................................................................................................................................GC---------AGCAACAACAACAACAGCA---------GC..................................................................................................................................23200.05101000
...........................................................................................................................................................................................................................................................................................................AGCAACAGCAACAACAGCAGC......21200.05100010
............................................................................................................................................................C---------AGCAACAACAACAACAGCA---------GCA.................................................................................................................................23200.05101000
...................................................................................................................................................................................................................................................CAACAG-------------CAACAACA-------A--------CAACATCAGC---...........................25200.05101000
...............................................................AACAG--------------CAGCAACAACAA--------CA---GCA........................................................................................................................................................................................................................22200.05100001
...................................................................................AGCAACAACAA--------CA---GCAGCAGCAACA...............................................................................................................................................................................................................25200.05100010
......................................................................................................................................................................................................................................................................CAACAACA-------A--------CAACATCAGC---AGC........................22200.05100010
...........................................................................................................................................................................................................................................................................ACA-------A--------CAACATCAGC---AGCA.......................18200.05100010
.............................................................................................................................................................................................................AACAA------------CAGCAGC------------AGCAACAG-------------CAACA...........................................................25200.05101000
...............................AA-CA----A---------------------CAACAG--------------CAGCAACAACAA--------CA---G..........................................................................................................................................................................................................................26200.05100010
..........................................................................................................................................CAAC---------AGCAGC---------AGCAACAACAACAAC.................................................................................................................................................25200.05100010
....................................................................................GCAACAACAA--------CA---GCAGCAGCA..................................................................................................................................................................................................................21200.05101000
droVir3
GCAGC--------------------------AG-CA----G---------------------CATCAC--------------CAGCAGCAGCAG--------CA---GCATCACCAGCAGCAGCACCAGC---AGCAGCAGC---------TGCAGC---------TGCAGCAGCATC---ATCAC------CAGCAGCAACA------G------------CAGCATC------------AGCACCTC-------------CAGCAACA-------G--------CAGCAGCAAC---AGCAGCAGCAGCAGCAGCACCTCCAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................CATC------------AGCACCTC-------------CAGCAACA-------G--------CAGCA...................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CAC------CAGCAGCAACA------G------------CAGCATC------------AGC..................................................................................2511.001000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................ATC---ATCAC------CAGCAGCAACA------G------------CAG.....................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................AGCAGCATC---ATCAC------CAGCAGCAACA------G------------CA......................................................................................................2811.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................TC-------------CAGCAACA-------G--------CAGCAGCAAC---AGCA.......................2520.501000000000000000000000000100000000000000000000000000000000000000
....C--------------------------AG-CA----G---------------------CATCAC--------------CAGCAGCAGCAG--------C...............................................................................................................................................................................................................................2530.331000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................GCAGCATC---ATCAC------CAGCAGCA..............................................................................................................................2130.331001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCACCTCCA..2230.331000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................AGCATC---ATCAC------CAGCAGC...............................................................................................................................1840.251000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCACCTCC...2140.251000000000000000000000000000000000001000000000000000000000000000
................................G-CA----G---------------------CATCAC--------------CAGCAGCAGCAG--------CA---...........................................................................................................................................................................................................................2450.201000000000000000000000000000000000000010000000000000000000000000
........................................................................................CAGCAG--------CA---GCATCACCAGCAGCAGC..........................................................................................................................................................................................................2560.171001000000000000000000000000000000000000000000000000000000000000
.CAGC--------------------------AG-CA----G---------------------CATCAC--------------CAGCAGCAGC..........................................................................................................................................................................................................................................2560.171001000000000000000000000000000000000000000000000000000000000000
..................................CA----G---------------------CATCAC--------------CAGCAGCAGCAG--------CA---...........................................................................................................................................................................................................................2370.141001000000000000000000000000000000000000000000000000000000000000
...................................A----G---------------------CATCAC--------------CAGCAGCAGCAG--------CA---...........................................................................................................................................................................................................................2270.141000000000000000000000000000001000000000000000000000000000000000
..................................CA----G---------------------CATCAC--------------CAGCAGCAGCAG--------................................................................................................................................................................................................................................2190.111000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................AGCACCAGC---AGCAGCAGC---------T..............................................................................................................................................................................19100.101000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................AACA-------G--------CAGCAGCAAC---AGCA.......................19200.102000000000000000000000020000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................GCAGCAAC---AGCAGCAGCAGCAGC............23200.102002000000000000000000000000000000000000000000000000000000000000
...................................................................................AGCAGCAGCAG--------CA---GCATCA.....................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
...............................AG-CA----G---------------------CATCAC--------------CAGCAGCA............................................................................................................................................................................................................................................19110.091000000000000000000000000000010000000000000000000000000000000000
............................................................................................AG--------CA---GCATCACCAGCAGCA............................................................................................................................................................................................................19110.091000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................AGCAGC---------TGCAGC---------TGCAGCAGCA......................................................................................................................................................22130.081001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ATCAC------CAGCAGCAACA------G------------CA......................................................................................................19140.071000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................CAGCAGCAGCACCAGC---AGCAGCA..........................................................................................................................................................................................23200.051000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AACA-------G--------CAGCAGCAAC---AGCAGCAGC..................24200.051000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AAC---AGCAGCAGCAGCAGCAGC.........21200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................CATCAC--------------CAGCAGCAGCAG--------CA---...........................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................AGCAACA-------G--------CAGCAGCAAC---AGCAGCAGCA.................28200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................A-------G--------CAGCAGCAAC---AGCAGCAGCA.................22200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CAGCAAC---AGCAGCAGCAGCAGC............22200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................CA---GCATCACCAGCAGCAG...........................................................................................................................................................................................................18200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................AGCAGCAG--------CA---GCATCACCAGCAA..............................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..................................CA----G---------------------CATCAC--------------CAGCAGCAG...........................................................................................................................................................................................................................................18200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AGCAGCAAC---AGCAGCAGCAGCA..............22200.051000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................A-------G--------CAGCAGCAAC---AGCAGCA....................19200.051000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................AGCAGCAACA------G------------CAGCATC------------AG...................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
ACAGC--------------------------AG-GA----G---------------------CAGCAA--------------CAGCAGCAGCAA--------CA---GCAGCAACAGCAGCAGCAGCAGC---AACAACAGC---------AACAGC---------AACAGCAGCAGC---AGCAG------CAACAGCAGCAGCAGCAG------------CAGCAGC------------AGCAACAG-------------CAGCAGCA-------G--------TAGCAGCAAC---AGCAGCAGCAGCAGCAGCAACAGCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................AGCAGC---AACAACAGC---------AACAGC---------................................................................................................................................................................21200.153200010
..................................................................................................................................................................................................................................AGC------------AGCAACAG-------------CAGCAGCA-------G--------TAGCA...................................2570.141100000
.......................................................................................................A---GCAGCAACAGCAGCAGCAGC.......................................................................................................................................................................................................21200.102000020
.........................................................................................AGCAA--------CA---GCAGCAACAGCAG..............................................................................................................................................................................................................20200.102200000
.................................................................................................................ACAGCAGCAGCAGCAGC---AACA.............................................................................................................................................................................................21200.102000020
....................................................................................................................GCAGCAGCAGCAGC---AACAACAGC---------...............................................................................................................................................................................23200.102000020
................................................................................................................AACAGCAGCAGCAGCAGC---AAC..............................................................................................................................................................................................21200.102000020
........................................................................................CAGCAA--------CA---GCAGCAACAGCAGC.............................................................................................................................................................................................................22200.102020000
..........................................................................................GCAA--------CA---GCAGCAACAGCAGCAGCAGCAGC---.................................................................................................................................................................................................29200.051000010
.........................................................................................................................AGCAGCAGC---AACAACAGC---------AACAGC---------AACA............................................................................................................................................................28200.051000010
............................................................................................................................................................................AGCAGC---AGCAG------CAACAGCAGCAGC.........................................................................................................................24200.051100000
.....................................................................................................................................................................................................................................................................................................AAC---AGCAGCAGCAGCAGCAGCAACA.....25200.051000010
....................................................................................GCAGCAGCAA--------CA---GCAGCAACAGCAG..............................................................................................................................................................................................................25200.051100000
.......................................................................................................................................CAACAGC---------AACAGC---------AACAGCAGCA......................................................................................................................................................23200.051100000
.........................................................................................................................................ACAGC---------AACAGC---------AACAGCAGCAGC---A................................................................................................................................................24200.051000010
........................................................................................................................................................................................................................................................G-------------CAGCAGCA-------G--------TAGCAGCAAC---...........................20200.051100000
.............................................................................................................AGCAACAGCAGCAGCAGCAGC---AAC..............................................................................................................................................................................................24200.051100000
................................................................................................................AACAGCAGCAGCAGCAGC---AACAACAGC---------...............................................................................................................................................................................27200.051100000
.................................................................................................................................................................................................................G------------CAGCAGC------------AGCAACAG-------------CAGCAGCA-------.................................................24200.051010000
............................................................................................................................................GC---------AACAGC---------AACAGCAGCAGC---AGCA.............................................................................................................................................24200.051100000
.........................................................................................................................................................................................G------CAACAGCAGCAGCAGCAG------------CAGCA...................................................................................................24200.051100000
................................................................................................................................................................................................CAACAGCAGCAGCAGCAG------------CAGCAG..................................................................................................24200.051100000
........................................................................................CAGCAA--------CA---GCAGCAACAGCAGCAGCAG........................................................................................................................................................................................................27200.051100000
.................................................................................................................................................................................................................................CAGC------------AGCAACAG-------------CAGCAGCA-------G--------T.......................................22200.051100000
...................................A----G---------------------CAGCAA--------------CAGCAGCAGCAA--------CA---GC.........................................................................................................................................................................................................................24200.051100000
.....................................................................................CAGCAGCAA--------CA---GCAGCAAC...................................................................................................................................................................................................................19200.051100000
......................................................................................................................................................................AACAGCAGCAGC---AGCAG------CAACAGCA..............................................................................................................................25200.051100000
.......................................................................................................................................................AACAGC---------AACAGCAGCAGC---AGC..............................................................................................................................................21200.051001000
................................................................................................................................................................................................................................GCAGC------------AGCAACAG-------------CAGCA...........................................................18200.051000010
..................................................................................................................CAGCAGCAGCAGCAGC---AACAAC...........................................................................................................................................................................................22200.051000010
..............................................................CAGCAA--------------CAGCAGCAGCAA--------CA---G..........................................................................................................................................................................................................................21200.051100000
..........................................................................................................................GCAGCAGC---AACAACAGC---------AACAGC---------A...............................................................................................................................................................24200.051100000
............................................................................................AA--------CA---GCAGCAACAGCAGCAGCAGCAGC---.................................................................................................................................................................................................27200.051100000
............................................................................................................................................................C---------AACAGCAGCAGC---AGCAG------CAACAGCA..............................................................................................................................26200.051100000
droGri2
GCAGC--------------------------AG-CA----G---------------------CAGCAG--------------CAGCAGCAGCAG--------CA---GCAGCAGCAGCAGCAGCAGCAGC---AGCAGCAGC---------AGCAGC---------AGCAGCAGCAGC---AGCAG------CAGCAGCAGCAGCAGCAG------------CAGCAGC------------AGCAGCAG-------------CAGCAGCA-------G--------CAGCAGTTAA---AACAGCAGCAGCATCAGCAGCAGCAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GCAAC--------------------------AG-CA----ACCACAACAGACCACACACCTG------CAGCAGCAGCA-----GC--------AACAGCAACAGCA---ACAG------------CAGC---AGCATCCGCAGC---------------------A---------TC---ATCTG------CAGCAGCAACA------GCAACAGCAC---CACCACC------------AGC----------------------AACAACAACAC-CAT-----GCCCAGCAGC---AGCAACAGCAACAGCAGCAGCAGCAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................CAACAACAC-CAT-----GCCCAGCAGC---AGCAAC.....................2811.001010000
................................................................................................................AG------------CAGC---AGCATCCGCAGC---------------------A---------......................................................................................................................................................1940.251000001
......................................................................................................................................................................................................................................................................................................GC---AGCAACAGCAACAGCAGCAGC......23200.153120000
.....................................................................................................................................................................................ATCTG------CAGCAGCAACA------GC...................................................................................................................1870.141010000
....................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGC18200.102020000
...............................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCAGCAGC23200.102020000
...........................................................................AGCA-----GC--------AACAGCAACAGCA---AC......................................................................................................................................................................................................................21200.051010000
..............................................................................................AACAGCAACAGCA---ACAG------------CAGC---A................................................................................................................................................................................................22200.051010000
......................................................................................................................................................................................................................................................................................................GC---AGCAACAGCAACAGCAGCAGCAGC...26200.051010000
.............................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAGCAGCAGC25200.051010000
........................................................................AGCAGCA-----GC--------AACAGCAACA..............................................................................................................................................................................................................................19200.051010000
....................................................................CAGCAGCAGCA-----GC--------AACAG...................................................................................................................................................................................................................................18200.051010000
...............................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCAGC...20200.051000001
.............................................................................CA-----GC--------AACAGCAACAGCA---ACAG------------CAGC---A................................................................................................................................................................................................26200.051010000
.....................................................................................................................................................................................................................................................................................................AGC---AGCAACAGCAACAGCA...........19200.051001000
...................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGC19200.051000001
..............................................................................................AACAGCAACAGCA---ACAG------------CAGC---AG...............................................................................................................................................................................................23200.051100000
...............................................................................................ACAGCAACAGCA---ACAG------------CAGC---.................................................................................................................................................................................................20200.051010000
......................................................................................................CAGCA---ACAG------------CAGC---AGCATC...........................................................................................................................................................................................19200.051000001
.................................................................................................................................................................................................................................................................................................CAGCAGC---AGCAACAGCAAC...............19200.051010000
............................................................................................................................................................................................................................................................................................................GCAACAGCAACAGCAGCAGCAGC...23200.051000001
..............................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAGCAG....20200.051001000
.....................................................................................C--------AACAGCAACAGCA---ACAG------------CAGC---AGC..............................................................................................................................................................................................25200.051010000
...............................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCAGCA..21200.051001000
...........................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAGCAGC......21200.051010000
......................................................................GCAGCAGCA-----GC--------AACAGCAACAGC............................................................................................................................................................................................................................23200.051000001
............................................................................GCA-----GC--------AACAGCAACAGCA---AC......................................................................................................................................................................................................................20200.051010000
.............................................................................CA-----GC--------AACAGCAACAGCA---AC......................................................................................................................................................................................................................19200.051000001
..............................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAGCAGC...21200.051000001
.....................................................................................C--------AACAGCAACAGCA---ACAG------------CAGC---.................................................................................................................................................................................................22200.051010000
droBip1
GCAAC--------------------------CC-CA----A------CAGACCGCACACCTG------CAACAGCAACA-----TC--------AGCAGCAGCAGCA---GCAA---------------C---AGCAGCAGCAGC---------------------ACCACCTGC------AGCA------------GCAGCA------GCAGCAGC---ACCACCACC------------AGC---------AACAACAAC----AA------------------CAACATCATG---CCCAGCAGCAGCAGCAGCAACACCACCSizeHit CountTotal NormTotal
No Reads
droKik1
CCAGC--------------------------AG-CA----G---------------------CACCAG--------------CAGCAGCAGCAC--------CA---GCAGCAGCAGCTCCAGCAGCAGC---AGCACCAGC---------AGCAGC---------ACCACCAGCAGC---AGCAG------CACCAGCAGCAGCAGCAC------------CAGCAGC------------AGCAGCAC-------------CAGCAGCA-------G--------CAGCAC--AC---AGCAGCAGCAGCAACAGCAGCAGCACCSizeHit CountTotal NormTotal
No Reads
droFic1
GCAGC--------------------------AG-CA----G---------------------CAGCAA--------------CGGCAGCAACTG--------CA---GCAGCAGCAACTGCAGCAGCAAC---AACAGCAGC---------AGCAAC---------AACAGCAGCAAC---AACAG------CAGCAGCAACA------G------C------AACAGC------------AGCAACTA-------------CAACAACA-------A--------CAGCAGCAAC---AGCAGCAGCAACAACAGCAACAGCAGCSizeHit CountTotal NormTotal
No Reads
droEle1
CCAGCC---GCCGGCGGCATTCAC-----------------------------------CAG------CAACAG-----CAGCAACA--------CCAGCAACAGCA---GCAA------------CATC---AGCAACAGCAGCAACATCTGCAGCA---GCAGCA------ACATCAGCAACA---------GCAGCAAC------AC------------CATCAGC------------AGCAACAA-------------CAGCAGCA-------A--------CACCATCAGC---AGCAGCAGCAACACCATCAGCAGCAGCSizeHit CountTotal NormTotal
No Reads
droRho1
CCATG-----ATGGA----CTCGCC----GCCGCAGCCAT---------------CT---------------------------------------------AC---GCAACAGCAATT---GCCATCGG---CCCAGCAGC---------AGCAGC---------AGTCTCAGCAACAACAACA---------GCAGCAACA------G------CAACAGCAGCAGC------------AGC---AA------CAA-------CAGGC-------G--------GTGGTGCTGC---AGCAGGTGCAACAGCAGCAGAAGCACCSizeHit CountTotal NormTotal
No Reads
droBia1
CCAGC--------------------------TA-CA----A---------------------GCGCTA--------------CAGCAGCAGCAG--------CA---ACAACAGCAGCAGCAGCAACAAC---AGCAGCAGCAGCAACAACAGCAGC------------------AGC---AGCAA------CAACAGCAACAGCAG---------C------AGCAAG---------TGCAGCAACTG-------------CAACAAGC-------A--------CAGGAGCAGC---AGCCACTGCATCAGCAGCAGCAGCAACSizeHit CountTotal NormTotal
No Reads
droTak1
CCTGCA---GTTGTC----CA-TC----------CA----G------CAGGCGGCTCACCAT------CATCAGCAGGA-----GC--------AGCATCGCCAGCA---GCAGCAGCA---------GC---AACACCAGCAGCAGC---------------------------------AACA------------GCAGCA------GCAGCAGC---ATCACCAGC------------AGC---AA------CAG-------CAG------------------GGTCATCCTC---AGGCGCCGCCGCCACAGCAGCAACAGCSizeHit CountTotal NormTotal
No Reads
droEug1
TCCGCC---GGCGGC---ATACAC-----------------------------------CAG------CAGCAT-----CAGCAACA--------GCAGCACCAGCA---GCAACAACA---------GC---AACAACATCAGCAACAACAGCATCAGCAGCAACA------ACACCACCAGCA---------GCAGCAACA------C------------CACCAACAGCAGCAACACCACCAACAG-------------CAACAACA-------T--------CTACAACAGC---AGCAGCAGCAACACCAGCAGCAGCAGCSizeHit CountTotal NormTotal
No Reads
dm3
GCAGC--------------------------AG-CA----A---------------------CACCAGCAGCAC-----CAGCAGCAGCAAC--------ACCA---GCAGCAGCAGCA---------CCAGCAACACCAGCAGCAACAGCAGCAGCA------ACA------CCAACATCAGCA---------GCAGCAACA------G------CAACACCTTC---------------AGC----------------------AGCAGCAACAC-CA-CCAGC----TGCAGC---AGCAACAGCAGCAGCAGCAGCATCAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................TTC---------------AGC----------------------AGCAGCAACAC-CA-C............................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...............................................................................................................................................................................AACATCAGCA---------GCAGCAACA------G------CAA...........................................................................................................2331.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CAGCAACAC-CA-CCAGC----TGCAG...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................A---GCAGCAGCAGCA---------CCAGCAACACCA..........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CAACA------G------CAACACCTTC---------------AGC----------------------AG..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CACCTTC---------------AGC----------------------AGCAGCAACAC-CA-CCAGC----....................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................A---------------------CACCAGCAGCAC-----CAGCAGCA...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AGCAACA------G------CAACACCTTC---------------AGC----------------------............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CA---------GCAGCAACA------G------CAACACCTT.....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..........................................................................................AC--------ACCA---GCAGCAGCAGCA---------CC....................................................................................................................................................................................................2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................CAACATCAGCA---------GCAGCAACA------G------CAAC..........................................................................................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................AGC----------------------AGCAGCAACAC-CA-CCAGC----....................................2190.6760000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................C---AGCAACAGCAGCAGCAGCA........20200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000400000000000000000000000000000000000000000000000000000400
.........................................................................................................................................................................................................................AACACCTTC---------------AGC----------------------AGCAGC......................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GC----------------------AGCAGCAACAC-CA-CCAGC----....................................20110.4550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
ACTG------GCAGC----------------AG-CA----C---------------------CAGCAA--------------CATCACCACCAA--------CA---GCAGCAGCAGCAGCATCAACAGC---AACAGCAGCAGCAACAGCATCAGCA------GCA------GCAGCAGCAGCA---------ACATCAACA------G------CAGCAACATC---------------AAC----------------------AGCAGCAACAC-CA-ACAGC----AGCAACAGCAACAGAAGCAGCTCCAGCAGCAGCAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................GCAACAGCATCAGCA------GCA------GCA......................................................................................................................................................2150.20100000000001000000
..........................................................................................................................................................AGCA------GCA------GCAGCAGCAGC..............................................................................................................................................18200.05100000000001000000
........................................................................................CACCAA--------CA---GCAGCAGCAGCA...............................................................................................................................................................................................................20200.05110000000000000000
...............................................................................................................................AGC---AACAGCAGCAGCAACA.................................................................................................................................................................................19200.05100000000000100000
droSec2
CCGCCG---GCGGC----ATTCAC-----------------------------------CAG------CAGCAC-----CAGCAGCAGCAAC--------ACCA---GCACCAGCAGCA---------GC---AGCACCAGCAGCAACAGCAGCAGCA------ACA------CCAACATCAGCA---------GCAGCAACA------G------CAGCACCTTC---------------AGC----------------------AGCAGCAACAC-CA-CCAGC----TGCAGC---AGCAACAGCAGCAGCAGCAGCATCAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................CAGCAACAGCAGCAGCA------A.................................................................................................................................................................18200.1020020
..............................................................................................................................................................................CAACATCAGCA---------GCAGCAACA------G------..............................................................................................................21110.0910001
..................................................................................................................................................................................ATCAGCA---------GCAGCAACA------G------CAGCA.........................................................................................................22130.0810010
................................................................................................................................................................................ACATCAGCA---------GCAGCAACA------.....................................................................................................................18200.0511000
..................................................................................................................................................................................................................................................................................................TGCAGC---AGCAACAGCAGCA..............19200.0510010
.......................................................................................................A---GCACCAGCAGCA---------GC---AGC..............................................................................................................................................................................................18200.0510010
droYak3
CGCCCAGTCGTGAGC----CACGCA----GCAG-CTCCCC---------------TCCCCTG------CAGCAG-----------CAGCAAT--ATCAGCAGCAGCA---GCAG------------CAGC---AGCAGCAGCAGCAACAGCAGCAGC------------------------AGCA---------GCAGCAACA------G------C------------------------A---ACAGCAGCAACAG----------------------------CAGCTGCAAC---AGCAACAGCAACAGCTGCAACAGCAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................AGCA---------GCAGCAACA------G------C------------------------A---ACAGCAGCAAC......................................................................27200.5010000000000010
...........................................................................................T--ATCAGCAGCAGCA---GCAG------------CAGC---.................................................................................................................................................................................................2250.20101000000000
...................................................................................................CAGCAGCA---GCAG------------CAGC---AGCAGCAGC........................................................................................................................................................................................25200.10200000000002
............................................................................................................................................GCAGCAACAGCAGCAGC------------------------AGCA---------GCAGC...............................................................................................................................26200.05101000000000
................................................................................................................................................CAACAGCAGCAGC------------------------AGCA---------GCAGCA..............................................................................................................................23200.05100010000000
..................................................................................................................................................................................................GCAGCAACA------G------C------------------------A---ACAGCAGCAACA.....................................................................24200.05101000000000
........................................................................................................................................................GCAGC------------------------AGCA---------GCAGCAACA------G------C------------------------.....................................................................................20200.05101000000000
..............................................................................................ATCAGCAGCAGCA---GCAG------------CAGC---AGCAGCA..........................................................................................................................................................................................28200.05100100000000
.....................................................................................................................................AGCAGCAGCAGCAACAGCAGC............................................................................................................................................................................21200.05101000000000
....................................................................................................................................................................................................AGCAACA------G------C------------------------A---ACAGCAGCAACAG----------------------------........................................23200.05101000000000
...................................................................................................CAGCAGCA---GCAG------------CAGC---AGCAGCAGCA.......................................................................................................................................................................................26200.05101000000000
...........................................................................................................................................................GC------------------------AGCA---------GCAGCAACA------G------C------------------------A---ACAGCA...........................................................................24200.05101000000000
.........................................................................................................CA---GCAG------------CAGC---AGCAGCAGCAGCA....................................................................................................................................................................................23200.05101000000000
.....................................................................................................................................AGCAGCAGCAGCAACAGCA..............................................................................................................................................................................19200.05100010000000
.....................................................................................................................................................GCAGCAGC------------------------AGCA---------GCAGCAACA------G------C------------------------.....................................................................................23200.05101000000000
..................................................................................................GCAGCAGCA---GCAG------------CAGC---AG...............................................................................................................................................................................................19200.05101000000000
..............................................................................................................................................AGCAACAGCAGCAGC------------------------AGCA---------GC..................................................................................................................................21200.05100010000000
....................................................................................................................................................................................................AGCAACA------G------C------------------------A---ACAGCAGCAA.......................................................................20200.05100000100000
......................................................................................................................................GCAGCAGCAGCAACAGCAGCAGC------------------------A................................................................................................................................................24200.05100100000000
...............................................................................................................................................GCAACAGCAGCAGC------------------------AGCA---------GCAGCA..............................................................................................................................24200.05101000000000
droEre2
CCA-C--------------------------GG-CA----G------CAG------------CAGCGG--------------CA-CAGCTCGTG--------CA---GTTGCAGCAGCAGCACCAACAGC---AGCAGCAGCAGCTACAGCAGCAAC------------------AGCAGCAGCAGCAGCTACAGCAGCAAC------AG------------CAGCTGC------------AGC-------------------AGCAA----------CA-GCAGC----TGCAAC---AGCAACAGCAGCTGCAACTCAATCAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................GCAAC------AG------------CAGCTGC------------AGC-------------------AGCAA----------CA-GC...........................................2620.5010001000
.......................................................................................................................................................AGCAAC------------------AGCAGCAGCAGCAGCT.......................................................................................................................................22120.0810000010
.......................................................................................................................................................................................................AAC------AG------------CAGCTGC------------AGC-------------------AGCA...........................................................19130.0810001000
..................................................................................................................................................................................................................................TGC------------AGC-------------------AGCAA----------CA-GCAGC----....................................18200.0511000000
................................................................................................................................................................................GCAGCAGCAGCAGCTACAGT..................................................................................................................................20200.0510001000
................................................................................................................................GC---AGCAGCAGCAGCTACAGT...............................................................................................................................................................................20200.0510001000

Generated: 05/18/2015 at 04:55 AM