ID:

dps_2528

 Coordinate:

XL_group1a:5996709-5996993 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.6 -15.2

Flybase annnotation

CDS [Dpse\GA10439-cds]; exon [dpse_GLEANR_10835:4]; CDS [Dpse\GA10439-cds]; exon [dpse_GLEANR_10835:3]; intron [Dpse\GA10439-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
Helitron-1N1_DVirRCHelitron+
mature
  1. Unknown_group_98:588-613 -
  2. 2:17967638-17967663 -
  3. dps_2528  XL_group1a:5996832-5996857 -
  4. Unknown_singleton_2339:519-544 +
star
  1. Unknown_group_8:682-704 -
  2. dps_2294  Unknown_singleton_1403:3217-3239 -
  3. XL_group1e:1472443-1472465 -
  4. XL_group1e:9115869-9115891 -
  5. XL_group1e:9283437-9283459 -
  6. Unknown_singleton_1536:1286-1308 -
  7. 2:6047713-6047735 -
  8. XL_group3a:1565094-1565116 -
  9. XR_group8:5643337-5643359 -
  10. 4_group1:2245365-2245387 -
  11. 4_group3:42805-42827 +
  12. XR_group6:630794-630816 -
  13. XR_group6:3107650-3107672 +
  14. XR_group6:4108601-4108623 -
  15. dps_2528  XL_group1a:5996789-5996811 -
  16. Unknown_group_793:563-585 +
  17. Unknown_singleton_727:1772-1794 +
  18. Unknown_singleton_1686:1650-1672 +
  19. Unknown_singleton_1508:830-852 -
  20. Unknown_singleton_2339:565-587 +
  21. 2:18255318-18255340 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGTGCGGATCTATCTGGTGCCCGATCACCCTGGCGCCATGCAGACCAAAGTGAGTACATTTTATGTATGTAGAGCTACCTGTTTAGAGCCACCTTACGATAGCTGCAAGCTCTTTGGTTCTAGTCTTTTACCTTCTCTTGAAGTAACTTGAATCATCACAAAAATGAGCTTATATGCAACCCAGACGGACAGACGGGCAGACAGACATGGCTATATTGACTCGGCTATGGATGCTGATCAGGAATATATATACTTTATGGGGTCGTAAACGATTCCTTCTGGGTGTTACAAACAAAGCTATTTTATTCCAACTTCCGCTTTGCCAACCATTCAGGTGGTCGACTCGACGCTGACGCCCAGCTACAACGAGAGCTTCAACTTCTG
******************************************************************************************************************************************************************************************.((.........(((.((..(((((((..........)))))))..)))))................))********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 V112
male body		 SRR902010
ovaries
 SRR902012
CNS imaginal disc
 GSM444067
head
 M062
head
..........................................................................................................................................................................................CGGACAGACGGGCAGACAGACATGGC............................................................................................................................................................................. 26 0 4 0.75 3 3 0 0 0 0 0 0
.........................................................................................................................................................................................ACGGACAGACGGGCAGACAGACATGGC............................................................................................................................................................................. 27 0 4 0.50 2 0 0 0 2 0 0 0
........................................................................................................................................................................................................................................TGCTGATCAGGAATATATATACT.................................................................................................................................. 23 0 20 0.45 9 2 4 3 0 0 0 0
........................................................................................................................................................................................................................................TGCTGATCAGGAATATATATACTTT................................................................................................................................ 25 0 18 0.39 7 2 1 4 0 0 0 0
........................................................................................................................................................................................................................................................ATATACTTTATGGGGTCGT...................................................................................................................... 19 0 3 0.33 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................TGCTGATCAGGAATATATATACTTTA............................................................................................................................... 26 0 18 0.33 6 3 0 2 1 0 0 0
........................................................................................................................................................................................................................................TGCTGATCAGGAATATATATAC................................................................................................................................... 22 0 20 0.20 4 2 0 2 0 0 0 0
....GGGGATGTATCTGGTGCC........................................................................................................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0
................................................................................................................................................................................................GACGGGCAGACAGACATGGCT............................................................................................................................................................................ 21 0 6 0.17 1 1 0 0 0 0 0 0
................................................................................................................................................................................................GACGGGCAGACAGACATGGC............................................................................................................................................................................. 20 0 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................TGCTGATCAGGAATATATATACTT................................................................................................................................. 24 0 20 0.15 3 0 2 1 0 0 0 0
........................................................................................................................................................................................GACGGACAGACGGGCAGACAG.................................................................................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0 0 0
........................................................................................................................................................................................GACGGACAGACGGGCAGACAGACA................................................................................................................................................................................. 24 0 7 0.14 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................CAGACGGGCAGACGGACATGG.............................................................................................................................................................................. 21 1 8 0.13 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................ACGGACAGACGGGCAGACAGAC.................................................................................................................................................................................. 22 0 8 0.13 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................ACGGACAGACGGGCAGACAGA................................................................................................................................................................................... 21 0 8 0.13 1 0 0 1 0 0 0 0
........................................................................................................................................................................................GACGGACAGACGGGCAGAC...................................................................................................................................................................................... 19 0 9 0.11 1 0 0 0 0 1 0 0
..........................................................................................................................................................................................CGGACAGACGGGCAGATAGACATGGC............................................................................................................................................................................. 26 1 10 0.10 1 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................ATATATGCTTTATGGGGTCGT...................................................................................................................... 21 1 10 0.10 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................TATACTTTATGGGGTCGTT..................................................................................................................... 19 1 11 0.09 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................TGCTGATCAGGAATATATATACTTTAT.............................................................................................................................. 27 0 15 0.07 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................AGGAATATATATACTTTATGG............................................................................................................................ 21 0 16 0.06 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................ACGGACAGACGGGCAGACGGA................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................TGCTGATCAGGAATATATATACGT................................................................................................................................. 24 1 20 0.05 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................TGCTGATCAGGAATGTATATACTTTG............................................................................................................................... 26 2 20 0.05 1 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................TCCTGATCAGGAATATATATACT.................................................................................................................................. 23 1 20 0.05 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................TGCTGATCAGGAATATATATA.................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................ATCAGGAATATATATGCTTTG............................................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................ATATACTTTATGGGGTTGTA..................................................................................................................... 20 1 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

AACACGCCTAGATAGACCACGGGCTAGTGGGACCGCGGTACGTCTGGTTTCACTCATGTAAAATACATACATCTCGATGGACAAATCTCGGTGGAATGCTATCGACGTTCGAGAAACCAAGATCAGAAAATGGAAGAGAACTTCATTGAACTTAGTAGTGTTTTTACTCGAATATACGTTGGGTCTGCCTGTCTGCCCGTCTGTCTGTACCGATATAACTGAGCCGATACCTACGACTAGTCCTTATATATATGAAATACCCCAGCATTTGCTAAGGAAGACCCACAATGTTTGTTTCGATAAAATAAGGTTGAAGGCGAAACGGTTGGTAAGTCCACCAGCTGAGCTGCGACTGCGGGTCGATGTTGCTCTCGAAGTTGAAGAC
**********************************************************************************************************************************.((.........(((.((..(((((((..........)))))))..)))))................))****************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902010
ovaries
..............................................................................................................................................................................................GTCTGCCCGTCTGTCTGTACCGAT........................................................................................................................................................................... 24 0 1 3.00 3 3 0 0
.........................................................................................................................................................................................................................ACTGAGCCGATACCTACGACTAGTC............................................................................................................................................... 25 0 1 1.00 1 1 0 0
.............................................................................................................................................................................................TTTCTGCCCGTCTGTCTGTACCGAT........................................................................................................................................................................... 25 1 1 1.00 1 1 0 0
...............................................................................................................................................................................................TCTGCCCGTCTGTCTGTACCGAT........................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
............................................................................................................................................................................................CTGTCTGCCCGTCTGTCTGTACCGAT........................................................................................................................................................................... 26 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................CCGTCTGTCTGTACCGATAT......................................................................................................................................................................... 20 0 4 0.50 2 2 0 0
...................................................................................................................................................................................................CCCGTCTGTCTGTACCGATAT......................................................................................................................................................................... 21 0 2 0.50 1 1 0 0
...............................................................................................................AGAAACCAAGACCAGAAGATC............................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0
.....................................................................................................................................................................................................CGTCTGTCTGTACCGATAT......................................................................................................................................................................... 19 0 5 0.20 1 1 0 0
...........................................................................................................................................................................................CCTGTCTGCCCGTCTGTCTGT................................................................................................................................................................................. 21 0 8 0.13 1 1 0 0
..............................................................................................................................................................................................................................................................................................................................................CCACCAGCTGAGCTT.................................... 15 1 18 0.06 1 0 0 1
......................................................................................................................................................................................................................................................TATATATGAAATACCCCAGC....................................................................................................................... 20 0 20 0.05 1 1 0 0
.....................GGCTAGTCGGGACGCGGTA......................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0
.........................................................................................................................................................................................................................GCTGAGCCGATACCTACGACTAGTC............................................................................................................................................... 25 1 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:5996659-5997043 - dps_2528 TTGTGCGGATCTATCTGGTGCCCGATCACCCTGGCGCCATGCAGACCAA-AGTGAGTACATTTTATGTATGTAGAGCTACCT-----------------------------GTTTAGAGCCACCTTACGA------------------------------------------------------------------------------------------------------------------------------------------------------TAGCTG---------------------CAAGCTCTTTGGTTCTAGTCTTTT-----------------ACCTTCTCT-----------TGAAGTAACTTGAA----------TCA-------------------------------------------------------TCACAAAAATGAGCTTATATG-------------CAACCCAGACGGAC-----AGACGGGCAGACAGACATGGCTATATTGA--------------CTCGGCTATGGATGCTGATCAGGAATATAT-----ATACTTTATGGGGTCGTAAACGATTCCTTCTGGGTGTTACAAAC----AAAGCT--------A-------------------------------------------TTTTATTCCAA------------------CTTCCGCTTTGCCAACCAT-TCAG----------------------GTGGTCGACTCGACGCTGACGCCCAGCTACAACGAGA----GCTTCAACT-T-----------------CTG
droPer2 scaffold_25:1377057-1377486 + dpe_1274 TTGTGCGGATCTATCTGGTGCCCGATCACCCTGGCGCCATGCAGACCAA-AGTGAGTACATTTTATGTATGTAGAGTTACTT-----------------------------GTTTAGAGCCACCTTACGA------------------------------------------------------------------------------------------------------------------------------------------------------TAGCTG---------------------AAAGCTCTTTGGTTCTAGTCTTTT-----------------TCCTTCTCT-----------TGAAGTAACATGAA----------TCA-------------------------------------------------------TCACAAAAATGAGCTTATATGCA-----ACCCAGACGGACAGACGGGC-----AGACGGGCAGACAGACATGACTATATTGA--------------CTCGGCTATGGATGCTGATCAAGAATATAT-----ATACTTCATGGGGTCGTAAACGCTTCCTTCTGGGTGTTACAAAC----AAAGCT--------ATTTTATTCCTAGACTTTTCGAGTACACTGACACTTACT---C---CCATTGCAA------------------CTTCCGCTTTGCCAACCAT-TCAG----------------------GTGGTCGACTCGACGCTGACGCCCAGCTACAACGAGA----GCTTCAACT-T-----------------CTG
droWil2 scf2_1100000004943:4587657-4587936 - AAAA------------------------------------------------TAAATAAATATAATAAATATAAAATTTCCT-------------------------------CTAG---------------------------------------------------------------AGCTATTTGATATAGTGGTCCGATCCTGATAATTTCCA-----------------------------------------------------------------------------------------------------------TACTTG-----------------ATCTGCTCC-----------AG--ATAA---TAA----------TAA-------------------------------------------------------GCACAAAAAGAAAATTTTAAGATGGCTGAGTA--AAACGCATACGCAC-----GGACGAACAGACGGACATGGCTATATCGA--------------CTCAGCTTCTCATGATGATCAAGAATATAT-----ATACTTTATGGGGTCGGAAACGTCTCCTTCTGTGCGTTACAAAC----A-----TTTGACCAA--------------------------------------TTTTATAATACCC-----------------------TCTG-------------------------------------------------------------------------------------------------------------C--
droVir3 scaffold_12954:896161-896397 + ATGC--------------------------------------TGATCAAGAATATATATACTTTATGGGGTCGGAGGTGCTTCCTTCGGAGCACCTACATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTTCAAGT------CTCTTGCTCTTATAGGTTC----------------------------------------------------TGCGATCCTTGCA---------------------------------TTCATAC----A------------------------------------------------------------------T--ACGGACAGACGGAC-----AGACAGACAGACGGACATGGCTAGATCGA--------------CTCGGCTATTGATCCTGATCAGGAATATAT-----ATAC---------TCGGAGATGCTTCCTTCTGCCTATTACATAC----ATTAAG--------A--------------------------------------TTTTA---------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6425:144941-145148 + AGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTAGCTCTTATATTT---------------------------C-----------------TTCTTATTCTGAGATCCTTTTG---------------------------------CT------------------------------------------------------------------------------------CATACGGAC-----GGACGGACAGACGGACAGGGCTATATCGA--------------CTCAGCTTCTCGTCCTGATCAAGAATATAT-----ATACTTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTACATAC----A-----TTTCAACAA--------------------------------------AACCATTATACCC---TGATTTCCCA-TTTTCAA--------------TGGGT-TCAG-------------------------------------------------------------------------------------------G--
droGri2 scaffold_14624:35914-36132 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACAGCC-----GGACGGACAGACGGACATGGCTATATCGACTAAAGCATCACAA--GCACTGTTGACCCTGATCAAGAATATAT-----ATACTTTATGGGGTCGGAAATGCTTCCTTCTGCGTGG-----AC----A-----TTCACATAA--------------------------------------AACCATTATACCC---TTTTTACACG-TTTTTAA--------------TG-GT-TCAGGTTCAGGGTATAA------AAA-----------AACGTTGACGCACAGCAAGG-AAAGA----ACGCCTACT-T-----------------C--
droAna3 scaffold_13089:264287-264492 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----AGACGGACAGATGGATATGCTTTTATCGA--------------CTCAGAAGGTGATAATGATCAAGAATATAT-----ACACTTTATCGGGTCGGAGATGTCTCCTTCACTGCC--GCTCACTTGTAT--------AATAA--------------------------------------ATTTAGTTTGTCT---TCTCTTTATTTTATCTTA--------------TC-GC-TACTGTT--GGTCGCAA------GCT------GACTTTGCTCTTCCGCTCGGCTTCAACGG------GCTTCATCT-------------------T--
droBip1 scf7180000395990:19293-19528 + ACCA--------------------------------------------A-AGTTA-TACATTTT------------------------------------------------------------------------------------------------CGACCAACCTGTTATATGGCAGCTTTAGGATATAGTCGACCGATCTCGGCCGT-TCCG-------------------------------TTCTTGCAAAGGGGCGTGCAAAATCTTAAGT------CGATAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAACAGACAGAC-----GAACGGACAGACGGACATTTTTATATCAA--------------CTCATGAGGTGATCCAAATTAAGAATATACA-TACATACTTTATAGGGTCGGAGATGTCACCGTCACTACGTTGCAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302137:13790-14080 + TTGTA------------------------------------------------------------TG---------------------------------------------------------------------------------------------------------------GCAGCTATATGATATAGTCGTCCGATCCGGCCCGT-TCCGACATATATAGCAGTGAGAGTATATAGAAGACTATATG------------CAAAGTTTCATTC------AGATAGCTTTAA------------AA---CTGAGACTAGTCCC----------------------------TCAGTTTTTTGCGTAGAAACAG---------------------------------------------ACAG----------------------ACAGACAGACGGACAGACAGAC--------AG--ACGGACAGACAGAC-----AGACGGACAGACGGACATGGCTAGATCGA--------------CTCGGCTGTTGATGTTGATCAAGAATATAT-----ATACTTTATAGGGTCGGAGAGGTCTCCTTCACTGCGTTGCAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000448940:17221-17462 - CCGA-----------------------------------------------------------------------------------------------------------TT-TATAT------------------------------TCTGCGTGCAA------------------------------------------------------------------------------------------------------------------------TAACTA---------------------CACACCTTTTGGG-----TGTTTTGCTTTTCAGCAAGATAGCTT------TAAAACTGAGAG-----------------------------------------------------------------------------------------ACTAGTTTGCGCG------------------GAAACGGAC-----AGACGGACAGACGTATGTTACA-G--------ACGTATTCCGACTCTGCTCGTGATGCTGATCAAGAATATAT-----ATAATTTATGGGGTCTGAGGTGTCCCCTTCACTGCGTTGCAAAC----A-----TCTGCCTGA--------------------------------------ATTTATATTATCC-----------------------TCTGCTCTG--------------------------------------------------------------------------------------------------------C--
droEle1 scf7180000489347:4938-5170 + CTCC-----------------------------------------------------------------------------------------------------------GATGGGAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTGAATATTAAAAAA---CCGAGAGAC----------------------------------------------------------------------------TT--GCTTGCGAAGAAAC-----GGACGGACAAATGGACATGGCTCGATCGA--------------CTCTTCTAGTCATGCTGATCAAGAATATAA-----ATACTTTATTGGGTCGCAGATGTCTCCTTCACTGCGTTGCAAAC----AA-----T-----------------------------------------------TTATAATAAAC-------TACCTA-TGTACAT--------------TATCT-GCAG------------------------ATTCGACTTGA--------CCCAGCCATTACTAGA----TGTACAATT-T-----------------C--
droRho1 scf7180000778301:577-785 + ACCT-----------------------------------------------------------------------------------------------------------TTTTGAAACAAACTTGCGCTGCGTAGGAACTCCTAGAATCTGCATG--------------------------------------------------------------------------------------------------------------C--------AATC------TTCTAGCTTTTATAGTTTC----------------------------------------------------CGAGATCTCAGCG---------------------------------TTCAT----------------------------------------------------------------------------ACGGACAGACAGAC-----AGACGGACAGACGGACATGGCTATATCGA--------------CTCGGCTAGTGACCCTGATCAATAATATAT-----ATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000299642:12278-12551 + GTTC-----------------------------------------------------------G--------------------------------A-----------CTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------TACTGTCTCTTATAGTTTC----------------------------------------------------CGAGATCTCTGTG---------------------------------TTCAT----------------------------------------------------------------------------ACGGACGGACGGAC-----AGACCGAGAGACGGACATGGCTAGATCGA--------------CTCATCTAGTGATCCTAATCAAGAATATAT-----ATACCTTATGGGGTCGGAAACGCTCCCTTCTACTTCTTACATAC----T-----TTCCGACGA--------------------------------------ATATAGTATACCC---TTCTACTCTA-CAAGTAA--------------CGG--------------GTATAATAATTG---GTGATTTACTAGA-GCTGCCACCTCGTTGAAATAAAAATAGACTTTAACA-T-----------------CTG
droTak1 scf7180000412843:14448-14664 + ACCT-----------------------------------------------------------------------------------------------------------TTTTGAAACAAACTTGCGTTGCGTAGGAGCTCCTGGAATCTGCATG--------------------------------------------------------------------------------------------------------------CAAAATGCCAATC------TTCTAGCTTTTATAGTTTC----------------------------------------------------CGAGATCTCAGCG---------------------------------TTCAT----------------------------------------------------------------------------ACGGACAGACAGAC-----AGACAGACAGACGGACATGGCTAGATCGA--------------CTCGGCTAGTGATCCTGATCAAGAATATAT-----ATACTTTATGGGGTCGGAAACGCTTCCTTCTAGCTGTTACATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000408984:467728-468019 + ATTA-----------------------------------------------------------T--------------------------------ACGTGCCTAATCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCT------TTCTAGCTCTTATTGTACCTGAGATCTCAGCGATTTTAATTTTTC-----------------GTA---TT-------GTGGGCG---------------------------------TTTGAGTTGCCGTGGCAGCACGCTAAAATACACTTGAGCTGCATAGG------------AATTTCAA--------------TAATCTGGATGGGT-----AATCCGTCGGACGAACATGGATAAATCAG--------------CTCGGCTATTGATCCTGATCAAGAATATATAAAATATACATTATTTGGTCGGAAACAATTCCTTCTGGCTGTTACAAAC----TAAACT--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTACTTCGAAACTACTTTTTTCCAA--
dm3 chrU:3280747-3280935 + ACTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------GCTCCCA------------CCTTTTCGGCTATAGCCTTCC-----------------C--------TGACAGCGCTGGG-------------------------TTGTCACAC----------------------------------------------------------------------------TT--CACTTCATATGGAC-----AGAAGGACAGACGGACATGACCAGATCGT--------------TTCGGCTATTGATTC-GAACAAGAATATAT-----GTAATTGCTATGGT-----------CCTTCTGCCTGTTACGTTA----T-----TTTCAACGA--------------------------------------AATTGTAATATAC-----------------------------------------------------------------------------------------------------------------------------------------CA
droSim2 2l:21351595-21351792 - TTCT--------------------------------------------A----------------TGTATGTAGG------TATCTGGAGGCATCTCCATGCCTAAGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG------TTTTAGCTTCTATCGTTT-----------------------------------------------------CGAGATCGAGGCG---------------------------------CTCATATGGCTA------------------------------------------------------------------T--AAGGACAGACGGAC-----GGACCGACAGACAGACATGGCCAGATCGA--------------CTCGGTTATTGATCCTGATCAAGAATATAA-----G-------TGTGGTCGGAAACGTTTCCTTCTGCCTGTTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_28:686080-686270 - TTCT--------------------------------------------A----------------TGTATGTAGG------TATCTGGAGGCATCTCCATGCCTAAGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG------TTTTAGGTTCTATCGTTTC----------------------------------------------------TGAGATCGAGGCG---------------------------------CTCATATGGCTA------------------------------------------------------------------T--AAGGACAGACGGAC-----GGACCGACAGACAGACATGGCCAGATCGA--------------CTCGGTTATTGATCCCGATCAAGAATAAAG-----G-------TGTGGTCGGAAACGTTTCTGTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_006:6390-6606 - CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTAGTTCC----------------------------------------------------TGAGATCACAGCG---------------------------------TTCATACA----------------------------------------------GACGGACAGACAG--------------ACAGACGGACAGAC-----GGACGGACAGACGGACATGGCCAAATCGA--------------CTTGGCTATTGATCCTGATCAAGAATATAT-----ATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATAC----GGGAAG-----------------------------------------------TTTACCAATA------------------------CTTTCGGTCGTGCAACCGTAGCAC----------------------GCTGTCGGTTCA---------------------------------------------------------A--
droEre2 scaffold_4770:720585-720827 - CCGA---------------------TCACTGTAGCACC----------------ACTATACTTCACGCAAAAAGAATTACCT-----------------------------AGTTTT-------------------------------------------CTATGCACATTCCACATTGC------------------------------------------------------------------------------------------------AAGT------T--------------------------------------------------------------------------------------------------------------------TGTTTCCTGGTGTTGCCCCTCCCAAAACTGC-----AACTGTCACGG------------GTA----------------T---CTGATAGTCGGGCACTCGGGACGGACTGACGGACATGGCCAGATCGA--------------CTGGGCTATTGATCCCGATCGAGAATATAT-----ATACTTTATATGGTCGGAAACACTTCCTTCTGCCTGTTACAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTGTGCGGATCTATCTGGTGCCCGATCACCCTGGCGCCATGCAGACCAA-AGTGAGTACATTTTATGTATGTAGAGCTACCT-----------------------------GTTTAGAGCCACCTTACGA------------------------------------------------------------------------------------------------------------------------------------------------------TAGCTG---------------------CAAGCTCTTTGGTTCTAGTCTTTT-----------------ACCTTCTCT-----------TGAAGTAACTTGAA----------TCA-------------------------------------------------------TCACAAAAATGAGCTTATATG-------------CAACCCAGACGGAC-----AGACGGGCAGACAGACATGGCTATATTGA--------------CTCGGCTATGGATGCTGATCAGGAATATAT-----ATACTTTATGGGGTCGTAAACGATTCCTTCTGGGTGTTACAAAC----AAAGCT--------A-------------------------------------------TTTTATTCCAA------------------CTTCCGCTTTGCCAACCAT-TCAG----------------------GTGGTCGACTCGACGCTGACGCCCAGCTACAACGAGA----GCTTCAACT-T-----------------CTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAC-----AGACGGGCAGACAGACATGGC......................................................................................................................................................................................................................................................................................................................2640.7530000000030
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAC-----AGACGGGCAGACAGACATGGC......................................................................................................................................................................................................................................................................................................................2740.5020000000200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATCAGGAATATAT-----ATACT........................................................................................................................................................................................................................................................23200.4590400003020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATCAGGAATATAT-----ATACTTT......................................................................................................................................................................................................................................................25180.3970100004020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----ATACTTTATGGGGTCGT............................................................................................................................................................................................................................................1930.3310100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATCAGGAATATAT-----ATACTTTA.....................................................................................................................................................................................................................................................26180.3360000002130
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATCAGGAATATAT-----ATAC.........................................................................................................................................................................................................................................................22200.2040000002020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGCAGACAGACATGGCT.....................................................................................................................................................................................................................................................................................................................2160.1710000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGCAGACAGACATGGC......................................................................................................................................................................................................................................................................................................................2060.1710000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATCAGGAATATAT-----ATACTT.......................................................................................................................................................................................................................................................24200.1530200001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAC-----AGACGGGCAGACAG.............................................................................................................................................................................................................................................................................................................................2170.1410000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAC-----AGACGGGCAGACAGACA..........................................................................................................................................................................................................................................................................................................................2470.1410000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAC-----AGACGGGCAGACAGAC...........................................................................................................................................................................................................................................................................................................................2280.1310000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAC-----AGACGGGCAGACAGA............................................................................................................................................................................................................................................................................................................................2180.1310000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAC-----AGACGGGCAGAC...............................................................................................................................................................................................................................................................................................................................1990.1110000000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----ATACTTTATGGGGTCGTT...........................................................................................................................................................................................................................................19110.0910000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATCAGGAATATAT-----ATACTTTAT....................................................................................................................................................................................................................................................27150.0710000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATATAT-----ATACTTTATGG..................................................................................................................................................................................................................................................21160.0610100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATCAGGAATATAT-----ATA..........................................................................................................................................................................................................................................................21200.0510000001000
droPer2
TTGTGCGGATCTATCTGGTGCCCGATCACCCTGGCGCCATGCAGACCAA-AGTGAGTACATTTTATGTATGTAGAGTTACTT-----------------------------GTTTAGAGCCACCTTACGA------------------------------------------------------------------------------------------------------------------------------------------------------TAGCTG---------------------AAAGCTCTTTGGTTCTAGTCTTTT-----------------TCCTTCTCT-----------TGAAGTAACATGAA----------TCA-------------------------------------------------------TCACAAAAATGAGCTTATATGCA-----ACCCAGACGGACAGACGGGC-----AGACGGGCAGACAGACATGACTATATTGA--------------CTCGGCTATGGATGCTGATCAAGAATATAT-----ATACTTCATGGGGTCGTAAACGCTTCCTTCTGGGTGTTACAAAC----AAAGCT--------ATTTTATTCCTAGACTTTTCGAGTACACTGACACTTACT---C---CCATTGCAA------------------CTTCCGCTTTGCCAACCAT-TCAG----------------------GTGGTCGACTCGACGCTGACGCCCAGCTACAACGAGA----GCTTCAACT-T-----------------CTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGC-----AGACGGGCAGACAGACA..........................................................................................................................................................................................................................................................................................................................2220.501100000
droWil2
AAAA------------------------------------------------TAAATAAATATAATAAATATAAAATTTCCT-------------------------------CTAG---------------------------------------------------------------AGCTATTTGATATAGTGGTCCGATCCTGATAATTTCCA-----------------------------------------------------------------------------------------------------------TACTTG-----------------ATCTGCTCC-----------AG--ATAA---TAA----------TAA-------------------------------------------------------GCACAAAAAGAAAATTTTAAGATGGCTGAGTA--AAACGCATACGCAC-----GGACGAACAGACGGACATGGCTATATCGA--------------CTCAGCTTCTCATGATGATCAAGAATATAT-----ATACTTTATGGGGTCGGAAACGTCTCCTTCTGTGCGTTACAAAC----A-----TTTGACCAA--------------------------------------TTTTATAATACCC-----------------------TCTG-------------------------------------------------------------------------------------------------------------C--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATTTTAAGATGGCTGA...................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAGATGGCTGAGTA--AAACGCA.......................................................................................................................................................................................................................................................................................................................................................25200.20400040
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AAACGCATACGCAC-----GGACGA.....................................................................................................................................................................................................................................................................................................................................2150.20100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--AAACGCATACGCAC-----GGACGAACA..................................................................................................................................................................................................................................................................................................................................2550.20101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATGATGATCAAGAATATAT-----AT...........................................................................................................................................................................................................................................................2560.17100010
.................................................................................................................................................................................................................TAATTTCCA-----------------------------------------------------------------------------------------------------------TACTTG-----------------ATCTGCTCC-----------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.17101000
.................................................................................................................................................................................................................TAATTTCCA-----------------------------------------------------------------------------------------------------------TACTTG-----------------ATCTGCTCC-----------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.17101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTA--AAACGCATACGCAC-----...........................................................................................................................................................................................................................................................................................................................................21200.15303000
......................................................................................................................................................................................................................TCCA-----------------------------------------------------------------------------------------------------------TACTTG-----------------ATCTGCTCC-----------AG--ATAA---T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.14101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGCGTTACAAAC----A-----TT.....................................................................................................................................................................................................20200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTACAAAC----A-----TTTGACCAA--------------------------------------TT......................................................................................................................................................24200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCTCCTTCTGTGCGTTACAA...................................................................................................................................................................................................................23200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--AAACGCATACGCAC-----GGACG......................................................................................................................................................................................................................................................................................................................................21200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA--AAACGCATACGCAC-----GGAC.......................................................................................................................................................................................................................................................................................................................................21200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTACAAAC----A-----TTTGACC................................................................................................................................................................................................20200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTACAAAC----A-----TTTGACCA...............................................................................................................................................................................................21200.05100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATCGA--------------CTCAGCTTCTCAT...................................................................................................................................................................................................................................................................................21200.05101000
droVir3
ATGC--------------------------------------TGATCAAGAATATATATACTTTATGGGGTCGGAGGTGCTTCCTTCGGAGCACCTACATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTTCAAGT------CTCTTGCTCTTATAGGTTC----------------------------------------------------TGCGATCCTTGCA---------------------------------TTCATAC----A------------------------------------------------------------------T--ACGGACAGACGGAC-----AGACAGACAGACGGACATGGCTAGATCGA--------------CTCGGCTATTGATCCTGATCAGGAATATAT-----ATAC---------TCGGAGATGCTTCCTTCTGCCTATTACATAC----ATTAAG--------A--------------------------------------TTTTA---------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................CAAGAATATATATACTTTATGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.903800000000000000000000000000000251300000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTCAAGT------CTCTTGCTCTTATAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24101.1011001020001000000000000000000100002010003000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTCATAC----A------------------------------------------------------------------T--ACGGACAGACGGAC-----A..........................................................................................................................................................................................................................................................................................................................................24201.1022003000000000000000100000704600001000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTCATAC----A------------------------------------------------------------------T--ACGGACAGACGGAC-----AGAC.......................................................................................................................................................................................................................................................................................................................................27200.6012500000000000000000000000007000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATCGA--------------CTCGGCTATTGATC..................................................................................................................................................................................................................................................................................2390.565100001100000000000000000000000100000001000000000000000000000000
.................................................................................................................................................................................................................................................................................TTCAAGT------CTCTTGCTCTTATAGGTTC----------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.504000000000000000000000000101000000020000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCGA--------------CTCGGCTATTGATC..................................................................................................................................................................................................................................................................................21100.505000000000000000000001000000030010000000000000000000000000000000
.TGC--------------------------------------TGATCAAGAATATATATACTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.459000000000000000000000000000000063000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTCATAC----A------------------------------------------------------------------T--ACGGACAGACGG..................................................................................................................................................................................................................................................................................................................................................21200.357000020000000000000000000000000000200020000000000000000000000010
..................................................................................................................................................................................................................................................................................................TGCTCTTATAGGTTC----------------------------------------------------TGCGATCCTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.331000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTCAAGT------CTCTTGCTCTTATAGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.303000000000000000000000000100010000010000000000000000000000000000
..............................................CAAGAATATATATACTTTATGGGGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.255000000000000000000000000000000000000400000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGA--------------CTCGGCTATTGATCCTGATCA...........................................................................................................................................................................................................................................................................2640.251000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................TCATAC----A------------------------------------------------------------------T--ACGGACAGACGGAC-----AGAC.......................................................................................................................................................................................................................................................................................................................................26200.255000000100000000000000000000020000000010000000000000000000000010
.............................................TCAAGAATATATATACTTTATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.255000000000000000000000000000005000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTAGATCGA--------------CTCGGCTATTGATCC.................................................................................................................................................................................................................................................................................2740.251000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTCATAC----A------------------------------------------------------------------T--ACGGACAGACGGAC-----AGA........................................................................................................................................................................................................................................................................................................................................26200.204000010000000000000000000000000020000000100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGA--------------CTCGGCTATTGATCCTGA..............................................................................................................................................................................................................................................................................2450.201000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGA--------------CTCGGCTATTGATCCT................................................................................................................................................................................................................................................................................2150.201000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTCAAGT------CTCTTGCTCTTATAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.182001000000000000000000000000001000000000000000000000000000000000
..............................................CAAGAATATATATACTTTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153000000000000000000000000300000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TAAAATTTCAAGT------CTCTTGCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.111000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGATCGA--------------CTCGGCTATTGATC..................................................................................................................................................................................................................................................................................2490.111000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTTCAAGT------CTCTTGCTCTTATAGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.111000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCGA--------------CTCGGCTATTGATC..................................................................................................................................................................................................................................................................................2290.111000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TCATAC----A------------------------------------------------------------------T--ACGGACAGACGGAC-----AGA........................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000000020000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTCATAC----A------------------------------------------------------------------T--ACGGACAGACGGAC-----...........................................................................................................................................................................................................................................................................................................................................23200.102100000000000000000000000000000000000000000000000000000000000010
......................................................................................CGGAGCACCTACATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGAC-----AGACAGA....................................................................................................................................................................................................................................................................................................................................18200.102020000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTCATAC----A------------------------------------------------------------------T--ACGGACAGACGGAC-----AG.........................................................................................................................................................................................................................................................................................................................................25200.102000000200000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA--------------CTCGGCTATTGATCCC................................................................................................................................................................................................................................................................................20200.102000002000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGCTAGATCGA--------------CTCGG...........................................................................................................................................................................................................................................................................................21200.102000002000000000000000000000000000000000000000000000000000000000
.......................................................ATATACTTTATGGGGTCGGAGGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25140.071000000000001000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CAAGT------CTCTTGCTCTTATAGGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.071000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTCAAGT------CTCTTGCTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.071000010000000000000000000000000000000000000000000000000000000000
.............................................................TTTATGGGGTCGGAGGTGCTTCCTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.061000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTTCTGCCTATTACATAC----ATT..........................................................................................................................................................................................................25170.061000000000000000000000000001000000000000000000000000000000000000
.................................................................TGGGGTCGGAGGTGCTTCCTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22190.051000000010000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GCA---------------------------------TTCATAC----A------------------------------------------------------------------T--ACGGACAGACG...................................................................................................................................................................................................................................................................................................................................................23190.051000000000000000000000000000010000000000000000000000000000000000
..........................................TGATCAAGAATATATATACTTTATGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATCGA--------------CTCGGCTAT.......................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000100000000000000000000000000000
...........................................................................................CACCTACATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTTCAAGT------CTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGCTAGATCGA--------------CTCGGC..........................................................................................................................................................................................................................................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ACGGACAGACGGAC-----AGACAGACAGAC...............................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
...C--------------------------------------TGATCAAGAATATATATACTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
.............................................TCAAGAATATATATACTTTATGGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TCATAC----A------------------------------------------------------------------T--ACGGACAGACGG..................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTCATAC----A------------------------------------------------------------------T--ACGGACAGACGGA.................................................................................................................................................................................................................................................................................................................................................22200.051000000001000000000000000000000000000000000000000000000000000000
....................................................TATATATACTTTATGGGGTCGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
..............................................CAAGAATATATATACTTTATGGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TCATAC----A------------------------------------------------------------------T--ACGGACAGACGGAC-----...........................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
........................................................TATACTTTATGGGGTCGGAGGTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ACGGACAGACGGAC-----AGACAGA....................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGACGGAC-----AGACAGA....................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACAGACGGACATGGCTA....................................................................................................................................................................................................................................................................................................................21200.051000000000001000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAC-----AGACAGACAGACGGACATGG.......................................................................................................................................................................................................................................................................................................................26200.051100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGATGCTTCCTTCTGCCT..........................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
..GC--------------------------------------TGATCAAGAATATATATACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------T--ACGGACAGACGGAC-----AG.........................................................................................................................................................................................................................................................................................................................................18200.051000000000000001000000000000000000000000000000000000000000000000
............................................ATCAAGAATATATATACTTTATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
.............................................TCAAGAATATATATACTTTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
droMoj3
AGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTAGCTCTTATATTT---------------------------C-----------------TTCTTATTCTGAGATCCTTTTG---------------------------------CT------------------------------------------------------------------------------------CATACGGAC-----GGACGGACAGACGGACAGGGCTATATCGA--------------CTCAGCTTCTCGTCCTGATCAAGAATATAT-----ATACTTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTACATAC----A-----TTTCAACAA--------------------------------------AACCATTATACCC---TGATTTCCCA-TTTTCAA--------------TGGGT-TCAG-------------------------------------------------------------------------------------------G--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATAC----A-----TTTCAACAA--------------------------------------AACCATTA................................................................................................................................................26200.408800000
..............................................................................................................................................................................................................................................................................................................................................................................TTTG---------------------------------CT------------------------------------------------------------------------------------CATACGGAC-----GGACGG.....................................................................................................................................................................................................................................................................................................................................21200.255500000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----ATACTTTATGGGGTCTGCG..........................................................................................................................................................................................................................................21200.204400000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGATGATTCCTTCTGCCTGT........................................................................................................................................................................................................................24200.153300000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTACATAC----A-----TTTCAACAA--------------------------------------AACCAT..................................................................................................................................................27200.153300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----A-----TTTCAACAA--------------------------------------AACCATTAT...............................................................................................................................................21200.102200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACAGACGGACAGGGCTA....................................................................................................................................................................................................................................................................................................................20200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAC-----GGACGGACAGACGG.............................................................................................................................................................................................................................................................................................................................20200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTATGGGGTCTGCGATGA......................................................................................................................................................................................................................................21200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTTATGGGGTCTGCGATGATT....................................................................................................................................................................................................................................25200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-----GGACGGACAGACGGA............................................................................................................................................................................................................................................................................................................................18200.051000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGGGGTCTGCGATGATTC...................................................................................................................................................................................................................................22200.051010000
............................................................................................................................................................................................................................................................................................................................................................................CTTTTG---------------------------------CT------------------------------------------------------------------------------------CATACGGAC-----GGACGGAC...................................................................................................................................................................................................................................................................................................................................25200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAC----A-----TTTCAACAA--------------------------------------AACCATTATAC.............................................................................................................................................26200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................CT------------------------------------------------------------------------------------CATACGGAC-----GGACGGACAGA................................................................................................................................................................................................................................................................................................................................22200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCTGTTACATAC----A-----TTTCAAC................................................................................................................................................................................................24200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTCTGCCTGTTACATAC----A-----TT.....................................................................................................................................................................................................24200.051000010
droGri2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACAGCC-----GGACGGACAGACGGACATGGCTATATCGACTAAAGCATCACAA--GCACTGTTGACCCTGATCAAGAATATAT-----ATACTTTATGGGGTCGGAAATGCTTCCTTCTGCGTGG-----AC----A-----TTCACATAA--------------------------------------AACCATTATACCC---TTTTTACACG-TTTTTAA--------------TG-GT-TCAGGTTCAGGGTATAA------AAA-----------AACGTTGACGCACAGCAAGG-AAAGA----ACGCCTACT-T-----------------C--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----ATACTTTATGGGGTCGGAAAC........................................................................................................................................................................................................................................2290.11110
droAna3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----AGACGGACAGATGGATATGCTTTTATCGA--------------CTCAGAAGGTGATAATGATCAAGAATATAT-----ACACTTTATCGGGTCGGAGATGTCTCCTTCACTGCC--GCTCACTTGTAT--------AATAA--------------------------------------ATTTAGTTTGTCT---TCTCTTTATTTTATCTTA--------------TC-GC-TACTGTT--GGTCGCAA------GCT------GACTTTGCTCTTCCGCTCGGCTTCAACGG------GCTTCATCT-------------------T--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACCA--------------------------------------------A-AGTTA-TACATTTT------------------------------------------------------------------------------------------------CGACCAACCTGTTATATGGCAGCTTTAGGATATAGTCGACCGATCTCGGCCGT-TCCG-------------------------------TTCTTGCAAAGGGGCGTGCAAAATCTTAAGT------CGATAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAACAGACAGAC-----GAACGGACAGACGGACATTTTTATATCAA--------------CTCATGAGGTGATCCAAATTAAGAATATACA-TACATACTTTATAGGGTCGGAGATGTCACCGTCACTACGTTGCAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTGTA------------------------------------------------------------TG---------------------------------------------------------------------------------------------------------------GCAGCTATATGATATAGTCGTCCGATCCGGCCCGT-TCCGACATATATAGCAGTGAGAGTATATAGAAGACTATATG------------CAAAGTTTCATTC------AGATAGCTTTAA------------AA---CTGAGACTAGTCCC----------------------------TCAGTTTTTTGCGTAGAAACAG---------------------------------------------ACAG----------------------ACAGACAGACGGACAGACAGAC--------AG--ACGGACAGACAGAC-----AGACGGACAGACGGACATGGCTAGATCGA--------------CTCGGCTGTTGATGTTGATCAAGAATATAT-----ATACTTTATAGGGTCGGAGAGGTCTCCTTCACTGCGTTGCAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCGA-----------------------------------------------------------------------------------------------------------TT-TATAT------------------------------TCTGCGTGCAA------------------------------------------------------------------------------------------------------------------------TAACTA---------------------CACACCTTTTGGG-----TGTTTTGCTTTTCAGCAAGATAGCTT------TAAAACTGAGAG-----------------------------------------------------------------------------------------ACTAGTTTGCGCG------------------GAAACGGAC-----AGACGGACAGACGTATGTTACA-G--------ACGTATTCCGACTCTGCTCGTGATGCTGATCAAGAATATAT-----ATAATTTATGGGGTCTGAGGTGTCCCCTTCACTGCGTTGCAAAC----A-----TCTGCCTGA--------------------------------------ATTTATATTATCC-----------------------TCTGCTCTG--------------------------------------------------------------------------------------------------------C--SizeHit CountTotal NormTotal
No Reads
droEle1
CTCC-----------------------------------------------------------------------------------------------------------GATGGGAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTGAATATTAAAAAA---CCGAGAGAC----------------------------------------------------------------------------TT--GCTTGCGAAGAAAC-----GGACGGACAAATGGACATGGCTCGATCGA--------------CTCTTCTAGTCATGCTGATCAAGAATATAA-----ATACTTTATTGGGTCGCAGATGTCTCCTTCACTGCGTTGCAAAC----AA-----T-----------------------------------------------TTATAATAAAC-------TACCTA-TGTACAT--------------TATCT-GCAG------------------------ATTCGACTTGA--------CCCAGCCATTACTAGA----TGTACAATT-T-----------------C--SizeHit CountTotal NormTotal
No Reads
droRho1
ACCT-----------------------------------------------------------------------------------------------------------TTTTGAAACAAACTTGCGCTGCGTAGGAACTCCTAGAATCTGCATG--------------------------------------------------------------------------------------------------------------C--------AATC------TTCTAGCTTTTATAGTTTC----------------------------------------------------CGAGATCTCAGCG---------------------------------TTCAT----------------------------------------------------------------------------ACGGACAGACAGAC-----AGACGGACAGACGGACATGGCTATATCGA--------------CTCGGCTAGTGACCCTGATCAATAATATAT-----ATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GTTC-----------------------------------------------------------G--------------------------------A-----------CTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------TACTGTCTCTTATAGTTTC----------------------------------------------------CGAGATCTCTGTG---------------------------------TTCAT----------------------------------------------------------------------------ACGGACGGACGGAC-----AGACCGAGAGACGGACATGGCTAGATCGA--------------CTCATCTAGTGATCCTAATCAAGAATATAT-----ATACCTTATGGGGTCGGAAACGCTCCCTTCTACTTCTTACATAC----T-----TTCCGACGA--------------------------------------ATATAGTATACCC---TTCTACTCTA-CAAGTAA--------------CGG--------------GTATAATAATTG---GTGATTTACTAGA-GCTGCCACCTCGTTGAAATAAAAATAGACTTTAACA-T-----------------CTGSizeHit CountTotal NormTotal
No Reads
droTak1
ACCT-----------------------------------------------------------------------------------------------------------TTTTGAAACAAACTTGCGTTGCGTAGGAGCTCCTGGAATCTGCATG--------------------------------------------------------------------------------------------------------------CAAAATGCCAATC------TTCTAGCTTTTATAGTTTC----------------------------------------------------CGAGATCTCAGCG---------------------------------TTCAT----------------------------------------------------------------------------ACGGACAGACAGAC-----AGACAGACAGACGGACATGGCTAGATCGA--------------CTCGGCTAGTGATCCTGATCAAGAATATAT-----ATACTTTATGGGGTCGGAAACGCTTCCTTCTAGCTGTTACATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ATTA-----------------------------------------------------------T--------------------------------ACGTGCCTAATCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCT------TTCTAGCTCTTATTGTACCTGAGATCTCAGCGATTTTAATTTTTC-----------------GTA---TT-------GTGGGCG---------------------------------TTTGAGTTGCCGTGGCAGCACGCTAAAATACACTTGAGCTGCATAGG------------AATTTCAA--------------TAATCTGGATGGGT-----AATCCGTCGGACGAACATGGATAAATCAG--------------CTCGGCTATTGATCCTGATCAAGAATATATAAAATATACATTATTTGGTCGGAAACAATTCCTTCTGGCTGTTACAAAC----TAAACT--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTACTTCGAAACTACTTTTTTCCAA--SizeHit CountTotal NormTotal
No Reads
dm3
ACTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------GCTCCCA------------CCTTTTCGGCTATAGCCTTCC-----------------C--------TGACAGCGCTGGG-------------------------TTGTCACAC----------------------------------------------------------------------------TT--CACTTCATATGGAC-----AGAAGGACAGACGGACATGACCAGATCGT--------------TTCGGCTATTGATTC-GAACAAGAATATAT-----GTAATTGCTATGGT-----------CCTTCTGCCTGTTACGTTA----T-----TTTCAACGA--------------------------------------AATTGTAATATAC-----------------------------------------------------------------------------------------------------------------------------------------CASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................GCTGGG-------------------------TTGTCACAC----------------------------------------------------------------------------TT--CACTTC........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................C-----------------C--------TGACAGCGCTGGG-------------------------TTGTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTGTTACGTTA----T-----TTTCAACGA--------------------------------------A.......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AGAAGGACAGACGGACATGA.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTATGGT-----------CCTTCTGCCTGT........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................A------------CCTTTTCGGCTATAGCCTTCC-----------------C--------TGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGACATGACCAGATCGT--------------................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGACATGACCAGATCGT--------------................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGACATGACCAGATCGT--------------................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGACATGACCAGATCGT--------------................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGACATGACCAGATC................................................................................................................................................................................................................................................................................................................2290.3330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGACATGACCAG...................................................................................................................................................................................................................................................................................................................19140.2940000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000011000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACGGACATGACCAGATC................................................................................................................................................................................................................................................................................................................21110.2730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGACATGACCAGATCG...............................................................................................................................................................................................................................................................................................................20130.2330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGACATGACCAGA..................................................................................................................................................................................................................................................................................................................2090.2220000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CTTTTCGGCTATAGCCTTCC-----------------C--------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAT-----GTAATTGCTATGAA-----------....................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGACATGACCAGAT.................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACATGACCAGATCG...............................................................................................................................................................................................................................................................................................................18190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACGGACATGACCAGA..................................................................................................................................................................................................................................................................................................................19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGACATGACCAGATC................................................................................................................................................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGACATGACCAGA..................................................................................................................................................................................................................................................................................................................18120.0810000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGACATGACCAGATCG...............................................................................................................................................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGACGGACATGACCAA...................................................................................................................................................................................................................................................................................................................20130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGACATGACCAGATC................................................................................................................................................................................................................................................................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGACATGACCAGAC.................................................................................................................................................................................................................................................................................................................19150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGACATGACCAGATCG...............................................................................................................................................................................................................................................................................................................19150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTCT--------------------------------------------A----------------TGTATGTAGG------TATCTGGAGGCATCTCCATGCCTAAGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG------TTTTAGCTTCTATCGTTT-----------------------------------------------------CGAGATCGAGGCG---------------------------------CTCATATGGCTA------------------------------------------------------------------T--AAGGACAGACGGAC-----GGACCGACAGACAGACATGGCCAGATCGA--------------CTCGGTTATTGATCCTGATCAAGAATATAA-----G-------TGTGGTCGGAAACGTTTCCTTCTGCCTGTTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGAC-----GGACCGA....................................................................................................................................................................................................................................................................................................................................1820.50100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATCGA--------------CTCGGTTATTGATCC.................................................................................................................................................................................................................................................................................2430.33100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGA--------------CTCGGTTATTGATCCTGATC............................................................................................................................................................................................................................................................................2640.25100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACATGGCCAGA..................................................................................................................................................................................................................................................................................................................1640.25100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA--------------CTCGGTTATTGATCCTGATC............................................................................................................................................................................................................................................................................2450.20100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA--------------CTCGGTTATTGATCCTGAT.............................................................................................................................................................................................................................................................................2350.20100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTATTGATCCTGATCAAGAAT......................................................................................................................................................................................................................................................................2560.17100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTATTGATCCTGATCAAGAA.......................................................................................................................................................................................................................................................................2460.17100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTATTGATCCTGATCAAGAATA.....................................................................................................................................................................................................................................................................2660.17100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTATTGATCCTGATCAAGAATATA...................................................................................................................................................................................................................................................................2860.17100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGATCGA--------------CTCGGT..........................................................................................................................................................................................................................................................................................1660.17100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA--------------CTCGGTTATTGATCCTGATCAAT.........................................................................................................................................................................................................................................................................27140.07100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA--------------CTCGGTTATTGATCCTGATCAATC........................................................................................................................................................................................................................................................................28140.07100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGATCCTGATCAAGA........................................................................................................................................................................................................................................................................19170.06100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGAC-----GGAC.......................................................................................................................................................................................................................................................................................................................................15200.05100000000000001000
droSec2
TTCT--------------------------------------------A----------------TGTATGTAGG------TATCTGGAGGCATCTCCATGCCTAAGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG------TTTTAGGTTCTATCGTTTC----------------------------------------------------TGAGATCGAGGCG---------------------------------CTCATATGGCTA------------------------------------------------------------------T--AAGGACAGACGGAC-----GGACCGACAGACAGACATGGCCAGATCGA--------------CTCGGTTATTGATCCCGATCAAGAATAAAG-----G-------TGTGGTCGGAAACGTTTCTGTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA--------------CTCGGTTATTGATCCCG...............................................................................................................................................................................................................................................................................2111.0010010
droYak3
CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTAGTTCC----------------------------------------------------TGAGATCACAGCG---------------------------------TTCATACA----------------------------------------------GACGGACAGACAG--------------ACAGACGGACAGAC-----GGACGGACAGACGGACATGGCCAAATCGA--------------CTTGGCTATTGATCCTGATCAAGAATATAT-----ATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATAC----GGGAAG-----------------------------------------------TTTACCAATA------------------------CTTTCGGTCGTGCAACCGTAGCAC----------------------GCTGTCGGTTCA---------------------------------------------------------A--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-----GGACGGACAGACGGACATGGCC.....................................................................................................................................................................................................................................................................................................................25204.2084008400000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGACATGGCCAAATCGA--------------CTTT............................................................................................................................................................................................................................................................................................28200.05100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAAATCGA--------------CTTGGCTATTGATC..................................................................................................................................................................................................................................................................................26200.05100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAG--------------ACAGACGGACAGAC-----GGACGGA....................................................................................................................................................................................................................................................................................................................................26200.05100100000000
droEre2
CCGA---------------------TCACTGTAGCACC----------------ACTATACTTCACGCAAAAAGAATTACCT-----------------------------AGTTTT-------------------------------------------CTATGCACATTCCACATTGC------------------------------------------------------------------------------------------------AAGT------T--------------------------------------------------------------------------------------------------------------------TGTTTCCTGGTGTTGCCCCTCCCAAAACTGC-----AACTGTCACGG------------GTA----------------T---CTGATAGTCGGGCACTCGGGACGGACTGACGGACATGGCCAGATCGA--------------CTGGGCTATTGATCCCGATCGAGAATATAT-----ATACTTTATATGGTCGGAAACACTTCCTTCTGCCTGTTACAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/18/2015 at 04:55 AM