dps_2524

exon [dpse_GLEANR_10888:2]; exon [dpse_GLEANR_10888:1]; CDS [Dpse\GA17426-cds]; CDS [Dpse\GA17426-cds]; intron [Dpse\GA17426-in]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-
Gypsy8-I_Dpse-int	LTR	Gypsy	-

##################################################--------------------------------------------------------------------------------################################################## GCAGGAACCACCACAACATCAGCAGCAGCACCAGTACCTGGAGCCCCTGCGTATCTTCCACAACAACAACAACAGCAACAGAAGCAACAATTGACAGACACAGAAACCTCTTCTAACCAAACACTTTCAGCCAGCGAGAAGAACATCAGCGGCAGCAGCAGTAGCAGCAGCAGCGGAAGC ************************************************.............................(((((......(((.......)))......)))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	M062 head	GSM444067 head	SRR902011 testis	GSM343916 embryo	V112 male body
...............................................................................................................................CAGCCAGCGAGAAGAACATCAGCG.............................	24	0	1	2.00	2	1	1	0	0	0	0	0
.........................................................................................................................................GAAGAACATCAGCGGCAGCAGCAGCAG................	27	1	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................ACAGACACAGAAACAACTTCTAAGCAAAC..........................................................	29	3	1	1.00	1	0	1	0	0	0	0	0
....................................................................ACAACAGCAACAGAAGCAACAATT........................................................................................	24	0	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................AACAATTGACAGACACAGA............................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................CAATTGACAGACACAGAAACCTCTTCCT.................................................................	28	2	1	1.00	1	0	0	1	0	0	0	0
...................................................................................GCAACAATTGACAGACACAGA............................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................CTAAGCAAACACTTTCAGCCAGCGAGA.........................................	27	1	1	1.00	1	1	0	0	0	0	0	0
......................................TGGAGCCCCTGCGTATCT............................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0
...............................................GGCGTATCTTCCACGACAAC.................................................................................................................	20	2	1	1.00	1	1	0	0	0	0	0	0
....................................................................................CAACAATTGACAGACACAGAAA..........................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................AAACACTTTCAGCCAGCGAGAAGAAC....................................	26	0	1	1.00	1	0	0	1	0	0	0	0
..........................................................................................................................................AAGAACATCAGCGGCAGCAG......................	20	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................CAGCGGCAGCAGCAGTAGCAGCAGC.........	25	0	2	0.50	1	0	0	1	0	0	0	0
...............................................................................................................................................CATCAGCGGCAGCAGCAGTA.................	20	0	3	0.33	1	0	0	0	1	0	0	0
...........................................................................................................................................AGAACATCAGCAGCAGCAGCAGTA.................	24	1	3	0.33	1	1	0	0	0	0	0	0
......................................................TTTCCACAACAACAACAACAGC........................................................................................................	22	1	7	0.29	2	2	0	0	0	0	0	0
.........................................................................................................................................................AGCAGCAGTAGCAGCAGCAGCGG....	23	0	4	0.25	1	1	0	0	0	0	0	0
.................ATCAGCAGCAGCACCAGTGCC..............................................................................................................................................	21	1	4	0.25	1	0	0	0	1	0	0	0
...........CACAACATCATCAGCACCACC....................................................................................................................................................	21	2	4	0.25	1	0	0	0	0	0	1	0
............................................................................................................................................................AGCAGTAGCAGCAGCATCGGA...	21	1	5	0.20	1	1	0	0	0	0	0	0
....................................CTCGGAGCCCATGCGTATCT............................................................................................................................	20	3	7	0.14	1	1	0	0	0	0	0	0
...............................................GGCGTATCTTCCAGGACAAC.................................................................................................................	20	3	8	0.13	1	1	0	0	0	0	0	0
...............................................................................................................................................CATCAGCGGCAGCACCCGTA.................	20	2	9	0.11	1	0	0	0	1	0	0	0
................CATCAGCGGCAGCACCCGTA................................................................................................................................................	20	2	9	0.11	1	0	0	0	1	0	0	0
...........................................................................................................................................AGAACATCTGCTGCAGCAGGA....................	21	3	20	0.10	2	2	0	0	0	0	0	0
....................................CCTGGAGCCGCTGCGTTTC.............................................................................................................................	19	2	12	0.08	1	0	0	0	0	0	0	1
...................CAGCAGCAGCACCAGTACT..............................................................................................................................................	19	1	18	0.06	1	0	0	1	0	0	0	0
...............................................................................................................................................CATCAGCGGCAGCAGCAGGA.................	20	1	20	0.05	1	0	0	0	1	0	0	0
...................CGGCAGCAGCACCAGTACC..............................................................................................................................................	19	1	20	0.05	1	0	0	1	0	0	0	0

CGTCCTTGGTGGTGTTGTAGTCGTCGTCGTGGTCATGGACCTCGGGGACGCATAGAAGGTGTTGTTGTTGTTGTCGTTGTCTTCGTTGTTAACTGTCTGTGTCTTTGGAGAAGATTGGTTTGTGAAAGTCGGTCGCTCTTCTTGTAGTCGCCGTCGTCGTCATCGTCGTCGTCGCCTTCG ************************************************.............................(((((......(((.......)))......)))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body	GSM343916 embryo
...........................................GGGGACGCATGGAAGGTGGTGTTA.................................................................................................................	24	3	1	1.00	1	0	1	0
.....................................................................................................................................CGCTCTTCTTGTAGTCGCCGT..........................	21	0	1	1.00	1	1	0	0
..............................................................................................................................AGTTGGTCGCTCTTCTAGT...................................	19	2	3	0.33	1	1	0	0
..................................................................................................................................GGCCGCATTTCTTGTAGTCG..............................	20	3	8	0.13	1	1	0	0
....................................................................TGTTGTCGTTGTATTCGTTGAT..........................................................................................	22	2	10	0.10	1	0	0	1
....CGTGGTGGTGTTGTAGGCG.............................................................................................................................................................	19	2	11	0.09	1	1	0	0

Species	Coordinate	ID	Alignment
dp5	XL_group1a:5419088-5419267 -	dps_2524	GCAGGAACCACCACAACATCAGCAGCAGCACCAGTACCTG--GAGCCCCTGCGTA------------------------------TCTT------------C---CACAACAACAA--------------------------------------C--------A--------ACAGCAACAG---AAGCAACA---AT--TGAC---AGACA------------------CAGAAA---CCT-------------CTTC-----TAACCA-----AACACTTTCAG------C--CAGCGAGAAGAACATCAGCGGCAGCAG-CAGTAGCAGCAGCAGCGGAAGC
droPer2	scaffold_14:2068066-2068230 -		GCAGGAATCACCACAACATCAGCAGCAGCACCAGTACCTG--GAGGCCCTGCGTG------------------------------TCT------------------TC------AACAA--------------------------------C----------------------AACAACAG---AAGCAACA---AT--TGAC---AGACA------------------CAGAAA---CAA-------------CTTC-----TACCCA-----AATACTTTCAG------C--CAGCGAGAAGAA------CATCAGCAG-CAGTAGCAGCAGCAGCGGAAGC
droWil2	scf2_1100000002615:1665-1834 +		GCAGGAACAGCAACAACAGCAGCAGCAACAACAACAACAG--C--------------A---------------GC---AGCAACAATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAGCAGCAG---GAACAGCA---AC--A-AC---AGCAGCAG------------------CAA---CA------------------ATATCA--------ACA---------G------CAACAGCAACAACAGCAGCAGCAACAGCAA-CAACAGCAGCAGCAGCAGCAAC
droVir3	scaffold_13042:1954575-1954750 +		ACAGGAATAGCAGCAACGAGAGGAACAACAGCAGCATCAG--T--------------AACAACACCTGCTGCTAC---AACA------------------------GC------AGCAA-----------C---------------ATCAAC----------------------CGCAGCAA---CAGTAACAGCAGG------------AA---------------------CAA---CAA-------------CATC-----AACCAC-----A---------GCAGAATCAGCAACAACAAGAACAACAGCAACAGCAG-CAATAGCAGCAGCAATAACAGT
droMoj3	scaffold_6500:16033430-16033611 -		GCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAGCAG--C--------------A---------------GC---AGCA---ACAGCAGCAGCAG---------C-----------------------AGCAACAGCAGCAGCAGCAGC----------------------AACAGCAG---TAGCAGCAGCAGC------------AAC---------------------AG---CAG-------------CAGC-----AG---C-----AACA------GCGGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAG-CAACAGCAGCAACAGCAGCAGC
droGri2	scaffold_15110:22427286-22427443 -		ACAGCAACAGTTGCAACAGCAGCAGCAGCAACAGCTGCAG--C--------------C---------------AG---GACA---ACAGCAGCAGTTG---------C------AGCAA--------------------------------C----------------------AACAACAG---CAGCAACA---AT--TG-------------------------------CAG---CAG-------------CAGC-----AACA-----GTT---------G------CAGCAGCAACAACAACAGCAGCAGCAGCAG-CAGCAGCAACAGCAGCAGCAGT
droAna3	scaffold_13117:5219550-5219740 -		GCAGCAATCACAACAACATAAGCAGCAACAGCAGCAGCAC--C--------------A---------------GC---AGCAGCAACATCT---------------TC------AGC------------A-----------------GAAGCAGC--------A--------ACAGCAGCAG---CAACATCA---AC--CAAC----ACAGCAGCAGCAATCGCAGGCACATCAG---CAA-------------CTCC-----AGGC-----TCA---------T------CAGCAGCAACATCTCCATCAGCAACAGCAG-CAGCAACACCACCATCAGCAGC
droBip1	scf7180000396717:238726-238905 -		GCAACAACAACAGCAACAACAGCAACAACAACAGCAACAT--C--------------A---------------GC---AGCA---GCTTCATCAT------C---ACCATCAACAA--------------------------------------C--------A--------ACAACAACAG---CAGCAACA---TT--TGACGCCGGCGGCTGTGACAAATGTG---------------------------------------AATGG-----A------------AATATTGCAGCACAGGCAGCAGTAGCTGCAGCCG-CAGCAGCAGCATCAGCAGCAGC
droKik1	scf7180000302698:174890-175071 -		GCAACAACGGCAACAACAGCAGCAGCAGCAACAGAAACAG--C--------------C---------------CC---AACA---GCAGCACCAACAT---C---CAC------AGC------------A-----------------ATAACAAC--------T--------ACAGCAATAG---CAGCACCA---ACTTAAAT------GACAG---------------CAGCAA---TAT-------------CTGC-----A--------------------ACAAGTGCAACCATAATAAATGCAATTGCGGTAGCAG-CAACAGCAGCAGCAGCAGCACC
droFic1	scf7180000454106:2120618-2120787 +		GCAGCAACAACAACATCAGCAGCAGCAGCACCAGCAGCAG--C--------------A---------------GC---AGCA---ACTTTA---------------CC------AGCAA-----------CAT---------------------C--------A--------ACAGCAGCAG---CAGCAACA---TTACGGTC---CACCA------------------CCGCCC---TA------------------TTTTCA--------------------ACAGCTACACCAGCAACAGCAACAGCAGCAACACCAG-CAGCAGCAGCAGCAACACCAGC
droEle1	scf7180000491356:120837-120994 -		CCAGCAACAGCAGCAACATCAGCAACAGCAGCAACATCTG--C--------------A---------------GCAGCAGCA---ACATCAGCAACAG---------C-----------------------AG---------------------C--------A--------ACACCATCAG---CAGCAACA---AC---------------------------------AGCAG---CAA-------------CACC-----A--------TCA---------G------CAGCAGCAGCAACACCATCAGCAGCAGCAA-CACCATCAGCAGCAGCAGCAGC
droRho1	scf7180000779334:988854-989037 -		GCAGCAACAGCAGCAACATCAGCAGCAACAGCAGCAGCAG--C--------------A---------------AC---AGCA---GCAGCAGCAGC---------AACAGCAGCA--------------------------------GCAACAGC--------AGCAC---AACAGCAGCAG---CCACAGCA---GC---------------AGCAGCAACTGCA------ACTG---CAG-------------CAGC-----A--------ACA---------G------CAACTGCAACAGCAACAGCAACTGCAGCAG-CAACAGCAACTGCAGCAGCAAC
droBia1	scf7180000298389:212895-213077 -		GCAGCAACAACAGCAACAGCAGCAGCAGCAACAACAACACACCCAACGGTGCGCAGCA---------------GC---AGCA------GCAACAT------C---ACC------AGC------------A-----------------GCAACATC--------A--------TCAGCAGCAG---CAGCAGCA---GC------------------------------------ATCACCAACAGCAACGGGTTG----TTGCC-----------------------------AGCAGCAAC--CAGCAACAGCAGCAGCTG-CAGCAGCAACAGCAGCAGCAGC
droTak1	scf7180000413903:59405-59560 +		GCAGCAACAACAACAATAGCAGCAGCAGCAACAGCAACAA--C--------------A---------------AC---AACA---GCAGCAGCAAC---------------------AA-----------CAG---------------------C--------A--------ACAGCAGCAG---CAGCAACA---ACAC--------------------------------------------------------ACC-----CAACGGTGCGCA---------G------CAGCAGCAGCAGCAACATCAGCAGCAGCAG-CAGCAACATCATCAGCAGCAGC
droEug1	scf7180000409538:185209-185382 +		ACAAAAGCAACACTAAAACTAACAGCAGCAGCAAAACCAA--TTGCAAC--------T---------------GC---AGCA------G------------T---AAC---------AACAACAACAACA-----------------GCAACATCCAAACGGCGACAAGCGGT------------------CA---AC---------------------------------AGCAG---CAA-------------CAGC-----AAAC-----GCT---------G------CAGTCGCAGTCGCAGCAGCAGCAGCAGCTG-CAGTAGCAGCAGCAGCAGCAGC
dm3	chrX:10512497-10512688 -		AAGGCAACACTAAAACTAACAGCAGCAACACCAATTGCAA--C--------------T---------------GC---AGCA---CCAGCAGCATC---------AAC------AAC------------A-----------------ACAACAACCAAGCGGCGGCAA---GTTAGCAGCAG---CAACAACA---ACACTAGC---AATCA------------------CAAGAA---CAA-------------CAGC-----AAAC-----GCT---------G------CAGTCGCAGCAGCAGCAGCAGCAGCAGCTG-CAGTAGCAGCAGCAGCAGCAGC
droSim2	3l:8237010-8237194 -		GCAGCAGCATCAACAACAACAGCAGCAGCAGCAGCAGCAG--C--------------A---------------GC---AACA---ACATCAGCAGAATATGCATCACC------A---T--------------------CAACATCAGC-------------------------AGCAACACATGCAGCAGCAGCAGC------------AA---------------------CAA---CAA-------------CAAC-----AT---C-----AGCA------GCAGCAGCAGCAACAACAACAACATCAGCAGCAGCAA-CACCAACAGCAGCAGCAACAAC
droSec2	scaffold_15:352002-352180 +		GCAGCAACACGCGCAACAGCAGCAACATCATCTGCACATG--CAGC-----------A---------------TG---CGCA---ACATCATCTGCACTTGTCCCATC---AGCAGG-----------------------------CGCAAC----------------------AGCAGCAC---ATGCAACA---CT--TGA-------CAC---------------------AG---CAA-------------CAGC-----AGCA-----GCA---------G------CAGCAGCAACAACAACAACAACAGCAGCAG-CAGCAGCAACAGCAGCAGCAGC
droYak3	X:6906430-6906606 -		GCAGCAGCAGCCACAACAGCAGCAGCAGCAACAACAACACACCAAACGGTGCGCA------------------GC---AGCA---GCAGCAGC---------------------AACAA-----------CAC---------------------C--------A--------TCAGCAGCAG---CAGCATCA---TC------------------------------------------AGCAGCAACGTGTTG----TTGCCA--------GCA------GCAA------C--CAGCAACAACAGCAACAGCTGCAGCAG-CAGCAGCAACAACATCAGCAGC
droEre2	scaffold_4690:1043002-1043171 +		GCAGCAGCAACAACAACAACAACAGCAGCACCAGCAACAT--TTGCTAGTGTGCA------------------------ACA------A------------TCAAATC---AATAACAA--------------------------------C----------------------AATAACAG---CAGTAATA---GT--TGC-------------------------------CA---CAA-------------CAGC-----TATCAA-----T---------ATAGTTACAACAATAATAATAACACCAACAACAGCAACCAGCAGCTGCAACAACAAATAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

GCAGGAACCACCACAACATCAGCAGCAGCACCAGTACCTG--GAGCCCCTGCGTA------------------------------TCTT------------C---CACAACAACAA--------------------------------------C--------A--------ACAGCAACAG---AAGCAACA---AT--TGAC---AGACA------------------CAGAAA---CCT-------------CTTC-----TAACCA-----AACACTTTCAG------C--CAGCGAGAAGAACATCAGCGGCAGCAG-CAGTAGCAGCAGCAGCGGAAGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................CAG------C--CAGCGAGAAGAACATCAGCG..............................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...................................................................................................................A--------------------------------------C--------A--------ACAGCAACAG---AAGCAACA---AT--T................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................AACA---AT--TGAC---AGACA------------------CAGA...............................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CA---AT--TGAC---AGACA------------------CAGAAA---CCT-------------CTTC-----CT...............................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................GCAACA---AT--TGAC---AGACA------------------CAGA...............................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................TG--GAGCCCCTGCGTA------------------------------TCT.................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................CAACA---AT--TGAC---AGACA------------------CAGAAA---..........................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................A-----AACACTTTCAG------C--CAGCGAGAAGAAC.....................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................AAGAACATCAGCGGCAGCAG-......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CAGCGGCAGCAG-CAGTAGCAGCAGC.........	25	2	0.50	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CATCAGCGGCAGCAG-CAGTA.................	20	3	0.33	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AGCAG-CAGTAGCAGCAGCAGCGG....	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...................CAGCAGCAGCACCAGTACT...................................................................................................................................................................................................................................................................................................................	19	18	0.06	1	0	0	0	1	0	0	0	0	0	0

droPer2

GCAGGAATCACCACAACATCAGCAGCAGCACCAGTACCTG--GAGGCCCTGCGTG------------------------------TCT------------------TC------AACAA--------------------------------C----------------------AACAACAG---AAGCAACA---AT--TGAC---AGACA------------------CAGAAA---CAA-------------CTTC-----TACCCA-----AATACTTTCAG------C--CAGCGAGAAGAA------CATCAGCAG-CAGTAGCAGCAGCAGCGGAAGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................A------------------CAGAAA---CAA-------------CTTC-----TACCC............................................................................	19	1	2.00	2	0	2	0	0	0	0
................................................................................................................................................................................................................GACA------------------CAGAAA---CAA-------------CTTC-----TACCC............................................................................	22	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................ATACTTTCAG------C--CAGCGAGAAGA.......................................	22	1	1.00	1	0	1	0	0	0	0
................CATCAGCAGCAGCACCAGT......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0

droWil2

GCAGGAACAGCAACAACAGCAGCAGCAACAACAACAACAG--C--------------A---------------GC---AGCAACAATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAGCAGCAG---GAACAGCA---AC--A-AC---AGCAGCAG------------------CAA---CA------------------ATATCA--------ACA---------G------CAACAGCAACAACAGCAGCAGCAACAGCAA-CAACAGCAGCAGCAGCAGCAAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................C--------A--------ACAGCAGCAG---GAACAGCA---AC--A-AC---..........................................................................................................................................	25	3	0.67	2	0	0	0	2	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAACAA.........................................	23	20	0.60	12	0	12	0	0	0
....................................................................................AATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------A............................................................................................................................................................................	23	20	0.60	12	0	12	0	0	0
....................................................................................AATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------.............................................................................................................................................................................	22	20	0.45	9	0	9	0	0	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAACA..........................................	22	20	0.45	9	0	9	0	0	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAACAAC........................................	24	20	0.25	5	0	5	0	0	0
....................................................................................AATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAGC........................................................................................................................................................................	27	20	0.25	5	0	5	0	0	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAACAACAGC.....................................	27	20	0.25	5	0	5	0	0	0
..........................AACAACAACAACAG--C--------------A---------------GC---A..........................................................................................................................................................................................................................................................................	19	20	0.25	5	0	0	0	5	0
........................................................................................................................................................AAC--------A--------ACAGCAGCAG---GAACAGCA---AC--A-...............................................................................................................................................	25	4	0.25	1	0	1	0	0	0
....................................................................................AATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------AC...........................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAACAACAG......................................	26	20	0.20	4	0	3	0	1	0
....................................................................................AATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAG.........................................................................................................................................................................	26	20	0.20	4	0	3	0	1	0
.....................................................................................................................................................AGCAAC--------A--------ACAGCAGCAG---GAACAGCA---.....................................................................................................................................................	25	5	0.20	1	0	1	0	0	0
............................CAACAACAACAG--C--------------A---------------GC---AGCAACAAT..................................................................................................................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................A---------G------CAACAGCAACAACAGCAGCAG................................	23	20	0.15	3	0	3	0	0	0
.......................................................................................................................................................................................................................................................................................................................AGCAACAGCAA-CAACAGCAGCAG..........	23	20	0.15	3	0	3	0	0	0
..................................................................................................................AGC------------A-----------------ACAGCAAC--------A--------ACAGCAGCAG---................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAACAACA.......................................	25	20	0.15	3	0	3	0	0	0
....................................................................................AATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACA..........................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0
.............................AACAACAACAG--C--------------A---------------GC---AGCAAC.....................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	3	0
...................................................................................................................................................ACAGCAAC--------A--------ACAGCAGCAG---G...............................................................................................................................................................	20	8	0.13	1	0	0	0	1	0
....................................................................................AATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAGCAG......................................................................................................................................................................	29	19	0.11	2	0	2	0	0	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAACAACAGCAG...................................	29	19	0.11	2	0	2	0	0	0
.......CAGCAACAACAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	2	0
...............................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGCA........................	18	20	0.10	2	0	0	0	2	0
.....................GCAGCAACAACAACAACAG--C--------------................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAACAACAGCA....................................	28	20	0.10	2	0	2	0	0	0
..........................................................................................................................................................................................................................................AA---CA------------------ATATCA--------ACA---------G------CAACAGCAACA..........................................	25	20	0.10	2	0	2	0	0	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAAC...........................................	21	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................................ATCA--------ACA---------G------CAACAGCAACAACAG......................................	23	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................CAGCA---AC--A-AC---AGCAGCAG------------------C...............................................................................................................	19	20	0.10	2	0	0	0	2	0
.........................CAACAACAACAACAG--C--------------A---------------GC---AGC........................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0
.................................................................................AACAATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------.............................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
.......................................................................................ATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAGCA.......................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
....................................................................................AATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAGCA.......................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0
.......................................................................................ATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAG.........................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................CAGCAA-CAACAGCAGCAGC.........	19	20	0.10	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................ATCA--------ACA---------G------CAACAGCAACAACAGCA....................................	25	20	0.10	2	0	2	0	0	0
..............................................................................................................................................................................AGCAGCAG---GAACAGCA---AC--A-...............................................................................................................................................	19	12	0.08	1	0	0	0	1	0
...................................AACAG--C--------------A---------------GC---AGCAACAATATC---------------AAC------AG.....................................................................................................................................................................................................................................	26	16	0.06	1	0	0	0	1	0
........................................................................................................................................................................................................A-AC---AGCAGCAG------------------CAA---CA------------------ATATCA--------ACA---------G------.....................................................	26	16	0.06	1	0	0	0	1	0
....................................ACAG--C--------------A---------------GC---AGCAACAATATC---------------AAC------.......................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
..........................................................................................................................................................................................................AC---AGCAGCAG------------------CAA---CA------------------ATATCA--------AC......................................................................	23	17	0.06	1	0	1	0	0	0
.....................................................................................................................................................AGCAAC--------A--------ACAGCAGCAG---G...............................................................................................................................................................	18	17	0.06	1	0	0	0	1	0
..........................................C--------------A---------------GC---AGCAACAATATC---------------AAC------AGC------------A-----------------A.....................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................ATCA--------ACA---------G------CAACAGCAACAACAGCAGCAG................................	29	18	0.06	1	0	1	0	0	0
.................................................................................................................................................................................................................CAGCAG------------------CAA---CA------------------ATATCA--------ACA---------G------CAA..................................................	24	18	0.06	1	0	1	0	0	0
.......................................................................................ATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAGCAGCAG---................................................................................................................................................................	29	18	0.06	1	0	1	0	0	0
.........................................................A---------------GC---AGCAACAATATC---------------AAC------AG.....................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0
......................................................................................TATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAGCAG......................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................TATCA--------ACA---------G------CAACAGCAACAACAGCAG...................................	27	19	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................AGCAG------------------CAA---CA------------------ATATCA--------ACA---------G------.....................................................	20	19	0.05	1	0	1	0	0	0
.....AACAGCAACAACAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
..............AACAGCAGCAGCAACAACAAC......................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
...........................................................................................................................................................................................ACAGCA---AC--A-AC---AGCAGCA...................................................................................................................................	18	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................GCAA-CAACAGCAGCAGCAGCAGC...	23	20	0.05	1	1	0	0	0	0
......................CAGCAACAACAACAACAG--C--------------A---------------GC---A..........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.........................CAACAACAACAACAG--C--------------A---------------GC---AGCAA......................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0
....................................................................................................................C------------A-----------------ACAGCAAC--------A--------ACAGCAGCAG---................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.......................................................................................ATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACA..........................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................A--------ACA---------G------CAACAGCAACAACAGCA....................................	22	20	0.05	1	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAA-CAACAGC...............	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAACAG..........................	21	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAA-CAACAG................	21	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................CAGCAA-CAACAGCAGCAGCAGCAGCA..	26	20	0.05	1	0	0	0	1	0
..................................................................................................................AGC------------A-----------------ACAGCAAC--------A--------ACAGCAGCA....................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................CAACAGCAA-CAACAGCAGCAGCAGCAG....	27	20	0.05	1	0	1	0	0	0
.....................GCAGCAACAACAACAACAG--C--------------A---------------GC---...........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................A---------G------CAACAGCAACAACAGCAGCAGCAAA............................	27	20	0.05	1	0	1	0	0	0
.............................AACAACAACAG--C--------------A---------------GC---AGCA.......................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
..................GCAGCAGCAACAACAACAACAG--C--------------................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................AGCAA-CAACAGCAGCAGCAGC......	21	20	0.05	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................ATATCA--------ACA---------G------CAACAGCAACAAC........................................	23	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAGC.........................	19	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................CAG------------------CAA---CA------------------ATATCA--------ACA---------G------CAACAGC..............................................	25	20	0.05	1	0	0	0	1	0
.................................................................................AACAATATC---------------AAC------AGC------------A-----------------ACAGCAA...............................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................TATCA--------ACA---------G------CAACAGCAACAACAGC.....................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGCAG................................	21	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................AACAGCAA-CAACAGCAGCAGCA........	22	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................ATATCA--------ACA---------G------CAACAGCAACAACAGC.....................................	26	20	0.05	1	0	1	0	0	0
.............CAACAGCAGCAGCAACAACAACAAC...................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
......................................................................................TATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACA..........................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
............................CAACAACAACAG--C--------------A---------------GC---AGCAACAA...................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................AGCAACAGCAA-CAACAGCAGC............	21	20	0.05	1	0	0	0	1	0
.................................................................................AACAATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------A............................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................CA--------ACA---------G------CAACAGCAACAACAGCAGCAGCA..............................	29	20	0.05	1	0	0	1	0	0
................................................................................CAACAATATC---------------AAC------AGC------------A-----------------ACAGCAA...............................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAGCA........................	22	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGCAA-C.....................	20	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAACAACAGTT....................................	28	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................A------------------ATATCA--------ACA---------G------CAACAGCAACAT.........................................	23	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................CA------------------ATATCA--------ACA---------G------CAACAGCAACAAC........................................	25	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................AA---CA------------------ATATCA--------ACA---------G------CAACAGCAA............................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................A---CA------------------ATATCA--------ACA---------G------CAACAGCAACA..........................................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................AGCAA-CAACAGCAGCAGCAGCAGCA..	25	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................CAACAGCAA-CAACAGCAGC............	19	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................AA---CA------------------ATATCA--------ACA---------G------CAACAGCAACAA.........................................	26	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAA-CAACAGCAGC............	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................AGCAA-CAACAGCAGCAGCAG.......	20	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................CAA-CAACAGCAGCAGCAGCA.....	20	20	0.05	1	0	0	0	0	1
..........................................................................................................................................................................................AACAGCA---AC--A-AC---AGCAGCAG------------------CA..............................................................................................................	22	20	0.05	1	0	0	0	1	0
........................GCAACAACAACAACAG--C--------------A---------------GC---AGC........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................GCAA-CAACAGCAGCAGCAGCA.....	21	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCAGCAACAGC.........................	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................AA---CA------------------ATATCA--------ACA---------G------CAACAGCAAC...........................................	24	20	0.05	1	0	1	0	0	0
....................................................................................AATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------T............................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................ACAGCAA-CAACAGCAGCAGCAGCA.....	24	20	0.05	1	0	0	0	0	1
.......................AGCAACAACAACAACAG--C--------------A---------------GC---AGCAAC.....................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAA-CAACAGCAGCAGC.........	26	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGC..................................	19	20	0.05	1	0	0	0	1	0
..............AACAGCAGCAGCAACAAC.........................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
......................................................................................TATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAGC........................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................TATCA--------ACA---------G------CAACAGCAACAACA.......................................	23	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................CAA---CA------------------ATATCA--------ACA---------G------CAACAGCAA............................................	24	20	0.05	1	0	1	0	0	0
.....................................................................................ATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------AC...........................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................ATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------ACAGC........................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................A---------G------CAACAGCAACAACAGCAGCAGC...............................	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................AA---CA------------------ATATCA--------ACA---------G------CAACAGCA.............................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................ATCA--------ACA---------G------CAACAGCAACAACA.......................................	22	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................AGCAACAGCAA-CAACAGCAGCAGC.........	24	20	0.05	1	0	0	0	1	0
..................................................................................ACAATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------A--------.............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.................................................................................AACAATATC---------------AAC------AGC------------A-----------------ACAGCAAC--------......................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAGCAGCAACA...........................	23	20	0.05	1	0	1	0	0	0

droVir3

ACAGGAATAGCAGCAACGAGAGGAACAACAGCAGCATCAG--T--------------AACAACACCTGCTGCTAC---AACA------------------------GC------AGCAA-----------C---------------ATCAAC----------------------CGCAGCAA---CAGTAACAGCAGG------------AA---------------------CAA---CAA-------------CATC-----AACCAC-----A---------GCAGAATCAGCAACAACAAGAACAACAGCAACAGCAG-CAATAGCAGCAGCAATAACAGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................AGCAA---CAGTAACAGCAGG------------A......................................................................................................................................	19	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................ACAAGAACAACAGCAACAGC.........................	20	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AC---AACA------------------------GC------AGCAA-----------C---------------ATCAAC----------------------...........................................................................................................................................................................	20	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAG-CAAT..................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAG-CA....................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAGCAG--C--------------A---------------GC---AGCA---ACAGCAGCAGCAG---------C-----------------------AGCAACAGCAGCAGCAGCAGC----------------------AACAGCAG---TAGCAGCAGCAGC------------AAC---------------------AG---CAG-------------CAGC-----AG---C-----AACA------GCGGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAG-CAACAGCAGCAACAGCAGCAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAG-CA....................	19	20	0.20	4	4	0	0	0	0	0
....................................GCAG--C--------------A---------------GC---AGCA---ACAGCAGCAGC.........................................................................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................CAGC-----AG---C-----AACA------GCGGCAGCAGC.................................................	22	13	0.08	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................AG---C-----AACA------GCGGCAGCAGCAGCA.............................................	22	14	0.07	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................C-----AG---C-----AACA------GCGGCAGCAGCAGC..............................................	22	18	0.06	1	0	0	0	0	1	0
....CAGCAGCAACAACAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................AGCAACAGCAGCAGCAGCAGC----------------------AACAGC.....................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAGCAGCA........................	22	20	0.05	1	0	0	0	0	1	0
.........................CAGCAACAGCAGCAG--C--------------A---------------GC---A..........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................AG---C-----AACA------GCGGCAGCAGCAGC..............................................	21	20	0.05	1	0	0	1	0	0	0
..............AACAGCAGCAGCAGCAACAGCAGCAG--C--------------A---------------................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
GCAGCAGCAGCAACAACAGCAGCA.................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................GC------------AAC---------------------AG---CAG-------------CAGC-----AG---C-----AACA------............................................................	21	20	0.05	1	1	0	0	0	0	0
..........................AGCAACAGCAGCAG--C--------------A---------------GC---AGCA---ACAGC...............................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..............................................................................AGCA---ACAGCAGCAGCAG---------C-----------------------AGCAACAGC.............................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
....................AGCAGCAGCAACAGCAGCAG--C--------------A---------------................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.....AGCAGCAACAACAGCAGCAGCAGCAACA........................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0

droGri2

ACAGCAACAGTTGCAACAGCAGCAGCAGCAACAGCTGCAG--C--------------C---------------AG---GACA---ACAGCAGCAGTTG---------C------AGCAA--------------------------------C----------------------AACAACAG---CAGCAACA---AT--TG-------------------------------CAG---CAG-------------CAGC-----AACA-----GTT---------G------CAGCAGCAACAACAACAGCAGCAGCAGCAG-CAGCAGCAACAGCAGCAGCAGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAGCAGCAGCAGC.........................	26	20	0.05	1	1	0

droAna3

GCAGCAATCACAACAACATAAGCAGCAACAGCAGCAGCAC--C--------------A---------------GC---AGCAGCAACATCT---------------TC------AGC------------A-----------------GAAGCAGC--------A--------ACAGCAGCAG---CAACATCA---AC--CAAC----ACAGCAGCAGCAATCGCAGGCACATCAG---CAA-------------CTCC-----AGGC-----TCA---------T------CAGCAGCAACATCTCCATCAGCAACAGCAG-CAGCAACACCACCATCAGCAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................CATCAGCAACAGCAG-CAGCAA................	21	7	0.14	1	0	0	1	0	0	0
...........................ACAGCAGCAGCAC--C--------------A---------------GC---AGCA.......................................................................................................................................................................................................................................................................	21	7	0.14	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GCAACAGCAG-CAGCAACAC.............	19	14	0.07	1	0	1	0	0	0	0
........................................................................................................................................................AGC--------A--------ACAGCAGCAG---CAACA...........................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................AGCAGC--------A--------ACAGCAGCAG---CAA.............................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

GCAACAACAACAGCAACAACAGCAACAACAACAGCAACAT--C--------------A---------------GC---AGCA---GCTTCATCAT------C---ACCATCAACAA--------------------------------------C--------A--------ACAACAACAG---CAGCAACA---TT--TGACGCCGGCGGCTGTGACAAATGTG---------------------------------------AATGG-----A------------AATATTGCAGCACAGGCAGCAGTAGCTGCAGCCG-CAGCAGCAGCATCAGCAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCAACAACGGCAACAACAGCAGCAGCAGCAACAGAAACAG--C--------------C---------------CC---AACA---GCAGCACCAACAT---C---CAC------AGC------------A-----------------ATAACAAC--------T--------ACAGCAATAG---CAGCACCA---ACTTAAAT------GACAG---------------CAGCAA---TAT-------------CTGC-----A--------------------ACAAGTGCAACCATAATAAATGCAATTGCGGTAGCAG-CAACAGCAGCAGCAGCAGCACC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCAGCAACAACAACATCAGCAGCAGCAGCACCAGCAGCAG--C--------------A---------------GC---AGCA---ACTTTA---------------CC------AGCAA-----------CAT---------------------C--------A--------ACAGCAGCAG---CAGCAACA---TTACGGTC---CACCA------------------CCGCCC---TA------------------TTTTCA--------------------ACAGCTACACCAGCAACAGCAACAGCAGCAACACCAG-CAGCAGCAGCAGCAACACCAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCAGCAACAGCAGCAACATCAGCAACAGCAGCAACATCTG--C--------------A---------------GCAGCAGCA---ACATCAGCAACAG---------C-----------------------AG---------------------C--------A--------ACACCATCAG---CAGCAACA---AC---------------------------------AGCAG---CAA-------------CACC-----A--------TCA---------G------CAGCAGCAGCAACACCATCAGCAGCAGCAA-CACCATCAGCAGCAGCAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCAGCAACAGCAGCAACATCAGCAGCAACAGCAGCAGCAG--C--------------A---------------AC---AGCA---GCAGCAGCAGC---------AACAGCAGCA--------------------------------GCAACAGC--------AGCAC---AACAGCAGCAG---CCACAGCA---GC---------------AGCAGCAACTGCA------ACTG---CAG-------------CAGC-----A--------ACA---------G------CAACTGCAACAGCAACAGCAACTGCAGCAG-CAACAGCAACTGCAGCAGCAAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAGCAACAACAGCAACAGCAGCAGCAGCAACAACAACACACCCAACGGTGCGCAGCA---------------GC---AGCA------GCAACAT------C---ACC------AGC------------A-----------------GCAACATC--------A--------TCAGCAGCAG---CAGCAGCA---GC------------------------------------ATCACCAACAGCAACGGGTTG----TTGCC-----------------------------AGCAGCAAC--CAGCAACAGCAGCAGCTG-CAGCAGCAACAGCAGCAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCAGCAACAACAACAATAGCAGCAGCAGCAACAGCAACAA--C--------------A---------------AC---AACA---GCAGCAGCAAC---------------------AA-----------CAG---------------------C--------A--------ACAGCAGCAG---CAGCAACA---ACAC--------------------------------------------------------ACC-----CAACGGTGCGCA---------G------CAGCAGCAGCAGCAACATCAGCAGCAGCAG-CAGCAACATCATCAGCAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACAAAAGCAACACTAAAACTAACAGCAGCAGCAAAACCAA--TTGCAAC--------T---------------GC---AGCA------G------------T---AAC---------AACAACAACAACA-----------------GCAACATCCAAACGGCGACAAGCGGT------------------CA---AC---------------------------------AGCAG---CAA-------------CAGC-----AAAC-----GCT---------G------CAGTCGCAGTCGCAGCAGCAGCAGCAGCTG-CAGTAGCAGCAGCAGCAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAGGCAACACTAAAACTAACAGCAGCAACACCAATTGCAA--C--------------T---------------GC---AGCA---CCAGCAGCATC---------AAC------AAC------------A-----------------ACAACAACCAAGCGGCGGCAA---GTTAGCAGCAG---CAACAACA---ACACTAGC---AATCA------------------CAAGAA---CAA-------------CAGC-----AAAC-----GCT---------G------CAGTCGCAGCAGCAGCAGCAGCAGCAGCTG-CAGTAGCAGCAGCAGCAGCAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................CAACACCAATTGCAA--C--------------T---------------GC---A..........................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................GCAGCATC---------AAC------AAC------------A-----------------ACA...................................................................................................................................................................................................	18	7	0.71	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AAC------AAC------------A-----------------ACAACAACCAAGCG........................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AGCAGCATC---------AAC------AAC------------A-----------------ACAACAAC..............................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---------AAC------AAC------------A-----------------ACAACAACCAAGCG........................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AC------AAC------------A-----------------ACAACAACCAAGC.........................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................C---------AAC------AAC------------A-----------------ACAACAACCAAG..........................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TCGCAGCAGCAGCAGCAG................................	18	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCAGC.........................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCA...........................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CAGCAGCATC---------AAC------AAC------------A-----------------AC....................................................................................................................................................................................................	19	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................AGCAGCAG---CAACAACA---ACAC.................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGTCGCAGCAGCAGCAGCAG................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CAGTCGCAGCAGCAGCAGCA.................................	20	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CGCAGCAGCAGCAGCAGCAGCA...........................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCAGCAGCATCAACAACAACAGCAGCAGCAGCAGCAGCAG--C--------------A---------------GC---AACA---ACATCAGCAGAATATGCATCACC------A---T--------------------CAACATCAGC-------------------------AGCAACACATGCAGCAGCAGCAGC------------AA---------------------CAA---CAA-------------CAAC-----AT---C-----AGCA------GCAGCAGCAGCAACAACAACAACATCAGCAGCAGCAA-CACCAACAGCAGCAGCAACAAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................C-------------------------AGCAACACATGCAGCAGCAGC......................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................AGAATATGCATCACC------A---T--------------------CAACAT........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................AGC-------------------------AGCAACACATGCAGCAGCA........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GCAGCAA-CACCAACAGCAGCAGC......	23	10	1.00	10	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AA-CACCAACAGCAGCAGCA.....	19	16	0.94	15	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0
..AGCAGCATCAACAACAAC.....................................................................................................................................................................................................................................................................................................................................	18	8	0.88	7	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGCAACAACAACAACATCAGCA..............................	22	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AGC------------AA---------------------CAA---CAA-------------CAAC-----AT---C-----AGCA------............................................................	22	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................ACAACATCAGCAGCAG..........................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AGCAGCAA-CACCAACAGCAGCAGCT.....	25	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................A-------------CAAC-----AT---C-----AGCA------GCAG........................................................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................C--------------A---------------GC---AACA---ACATCAGCA...........................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

GCAGCAACACGCGCAACAGCAGCAACATCATCTGCACATG--CAGC-----------A---------------TG---CGCA---ACATCATCTGCACTTGTCCCATC---AGCAGG-----------------------------CGCAAC----------------------AGCAGCAC---ATGCAACA---CT--TGA-------CAC---------------------AG---CAA-------------CAGC-----AGCA-----GCA---------G------CAGCAGCAACAACAACAACAACAGCAGCAG-CAGCAGCAACAGCAGCAGCAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................................................................................................................AG---CAA-------------CAGC-----AGCA-----GCA---------G------CA...................................................	19	20	0.15	3	0	0	0	3
................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAG-CAG...................	21	20	0.10	2	0	0	0	2
................................................................................................................................................................................................................................................AA-------------CAGC-----AGCA-----GCA---------G------CAGCAGCAAC...........................................	24	20	0.10	2	0	0	2	0
..............................................................................................................................................................................................................................................................................................................AACAACAACAACAGCAGCAG-CAGC..................	24	19	0.05	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................G-CAGCAGCAACAGCAGCAGCA..	21	20	0.05	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAG-CAGCAGC...............	22	20	0.05	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................CAACAACAACAACAGCAGCAG-C.....................	22	20	0.05	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAG-CAGC..................	21	20	0.05	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAG-CAGCA.................	22	20	0.05	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................AACAGCAGCAG-CAGCAGCAAC............	21	20	0.05	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAG-CAGCAGCA..............	22	20	0.05	1	0	0	1	0

droYak3

GCAGCAGCAGCCACAACAGCAGCAGCAGCAACAACAACACACCAAACGGTGCGCA------------------GC---AGCA---GCAGCAGC---------------------AACAA-----------CAC---------------------C--------A--------TCAGCAGCAG---CAGCATCA---TC------------------------------------------AGCAGCAACGTGTTG----TTGCCA--------GCA------GCAA------C--CAGCAACAACAGCAACAGCTGCAGCAG-CAGCAGCAACAACATCAGCAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................ATCA---TC------------------------------------------AGCAGCAACGTGTT...........................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................GCATCA---TC------------------------------------------AGCAGCAACGTGTTG----TT....................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................C---------------------AACAA-----------CAC---------------------C--------A--------TCAGCAGCAG---CAGC............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................GCATCA---TC------------------------------------------AGCAGCAACGTGTT...........................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................CAA-----------CAC---------------------C--------A--------TCAGCAGCAG---CAGCATC.........................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...GCAGCAGCCACAACAGCAGCAGCAGCAA..........................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TCA---TC------------------------------------------AGCAGCAACGTGTTG----TTGC..................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................TGCGCA------------------GC---AGCA---GCAGCAGC---------------------AACAA-----------.......................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................AA-----------CAC---------------------C--------A--------TCAGCAGCAG---CAGCATCA---TC------------------------------------------.........................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GCAGCCACAACAGCAGCAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................AC---------------------C--------A--------TCAGCAGCAG---CAGCATCA---TC------------------------------------------AGCA.....................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................CAGCAGCAACAACAACACACCAAACGGT.......................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................GCATCA---TC------------------------------------------AGCAGCAACGTGTTG----T.....................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................TGCCA--------GCA------GCAA------C--CAGCAACAACAGCA....................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....AGCAGCCACAACAGCAGCAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................AA-----------CAC---------------------C--------A--------TCAGCAGCAG---CAGC............................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................AGCAG---CAGCATCA---TC------------------------------------------AGCAGC...................................................................................................	21	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0
......GCAGCCACAACAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................C--------A--------TCAGCAGCAG---CAGCATCA---TC------------------------------------------.........................................................................................................	22	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................AGCAG---CAGCATCA---TC------------------------------------------AGCA.....................................................................................................	19	7	0.14	1	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AGCAG-CAGCAGCAACAACATCAGCA..	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.................AGCAGCAGCAGCAACAACAAC...................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............ACAACAGCAGCAGCAGCAACAAC......................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GCAGCAGCAACAACAACAACAACAGCAGCACCAGCAACAT--TTGCTAGTGTGCA------------------------ACA------A------------TCAAATC---AATAACAA--------------------------------C----------------------AATAACAG---CAGTAATA---GT--TGC-------------------------------CA---CAA-------------CAGC-----TATCAA-----T---------ATAGTTACAACAATAATAATAACACCAACAACAGCAACCAGCAGCTGCAACAACAAATAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................................................ACCAACAACAGCAACCAGCA.................	20	1	1.00	1	0	0	0	0	0	1	0
GCAGCAGCAACAACAACAACAACAGC...............................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	1	0	0	0	0	0	0
..AGCAGCAACAACAACAACAACAGC...............................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	1	0	0	0
.........ACAACAACAACAACAGCAGC............................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
........AACAACAACAACAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0
..AGCAGCAACAACAACAACAAC..................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0

dps_2524

XL_group1a:5419138-5419217 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-1.3	-1.2