ID:

dps_2499

 Coordinate:

XL_group1a:3910924-3911074 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.3 -17.9 -17.8

Flybase annnotation

CDS [Dpse\GA14064-cds]; exon [dpse_GLEANR_10967:1]; intron [Dpse\GA14064-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTCAGCATTGTCCACTACCAGCCGGAGCAAGTGCATCTGGCCTTTGGCGGTGAGTCTTTCATTATATAAAATGCCTTTTTATGTTCGTGCATTTGTTTATCTGTGAGAATGAGTGTGTGTGCATGCATGCATAATGTGTCCAAATGAACAGCGCTTTCTCACCCATCGACTGTACAATCCCAGCACAAAATATTGCAAGCAAATCAAATCGCGCACTGGTTCCCTCCACTCCCAACCCCAATCCCAAGGG
******************************************************************************************************.((((((..((((((.(((.(((....((((...))))....))).)))))))))))))))..************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 V112
male body
................................................................................................................................................ATGAACAGCGCTTTCTCACCC...................................................................................... 21 0 1 2.00 2 1 0 1
.....GCATTGTCCACTACCAGCC................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0
...............................................................................................GTTTATCTGTGAGAGTGAGTG....................................................................................................................................... 21 1 1 2.00 2 2 0 0
..........................................................................................................................................................................................................GATCAAATCGCGCACTGGTTC............................ 21 1 1 1.00 1 1 0 0
......................................................................................................TGTGAGAATGAGTGTGTGT.................................................................................................................................. 19 0 1 1.00 1 1 0 0
......CATTGTCCACTACCAGCCGG................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................AGCAAATCAAATCGCGCACTG................................ 21 0 1 1.00 1 1 0 0
.......ATTGTCCACTACCAGCCGGA................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0
.................................................................................................................................................................ACCCATCGACTGTACAATCCC..................................................................... 21 0 1 1.00 1 1 0 0
...................................................................................GTTCGTGCATTTGTTTATCTGT.................................................................................................................................................. 22 0 1 1.00 1 1 0 0
.........................GAGCAAGTGCATCTGGCCTTTGGC.......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0
...............CTACCAGCCGGAGCAAGTGCATCTGGC................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0
.............................AAGTGCATCTGGCCTTTGGC.......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
.....................................................................................................................................AATGTGTCCAAATGAACAGC.................................................................................................. 20 0 1 1.00 1 1 0 0
.........TGTCCACTACCAGCCGGAGC.............................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................ATCGCGCACTGGTTCCCTCC....................... 20 0 1 1.00 1 1 0 0
......................................................................AATGCCTTTTTATGTTCGTGC................................................................................................................................................................ 21 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................AAATCGCGCACTGGTTCCCTC........................ 21 0 1 1.00 1 1 0 0
...............................GTGCATCTGGCCTTTGGCGA........................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0
.......................CGGAGCAAGTGCATCTGGCCTTTGG........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0
............................CAAGTGCATCTGGCCTTTGG........................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
.......ATTGTCCACTACCAGCCGGAGCA............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
.......ATTGTCCACTACCAGCCGG................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0
.............................AAGTGCATCTGGCCTTTGGCGAGC...................................................................................................................................................................................................... 24 3 1 1.00 1 0 1 0
.......................................................................................................................................................................................................................ACTGGTTCCCTCCACTCCCAA............... 21 0 1 1.00 1 1 0 0
...............CTACCAGCCGGAGCAAGTGC........................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0
...................................................................................................................................................................................................GCAAGCAAATCAAATCGCGCACTGGTTCC........................... 29 0 1 1.00 1 0 1 0
.................................................................................................TTATCTGTGAGAATGAGTGTGTGT.................................................................................................................................. 24 0 1 1.00 1 1 0 0
...............................GTGCATCTGGCCTTTGGCG......................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0
..................CCAGCCGGAGCAAGTGCAT...................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0
..........................................................................................................AGAATGAGTGTGTGTGCATGC............................................................................................................................ 21 0 1 1.00 1 0 0 1
........................GGAGCAAGTGCATCTGGCCTT.............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0
...CGGCATTGTCCACTACCAGCCGA................................................................................................................................................................................................................................. 23 2 1 1.00 1 0 1 0
...CAGCATTGTCCACTACCAGCCGGA................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0
........................GGAGCAAGTGCATCTGGCCTTTGGCGAGC...................................................................................................................................................................................................... 29 3 1 1.00 1 0 1 0
...........................................................................................................................................................................................AAAACATTGTAAGCAAATCAAAT......................................... 23 2 2 0.50 1 1 0 0
....................................................................................TTCGTGCATGCGTTTACCT.................................................................................................................................................... 19 3 20 0.05 1 1 0 0

Anti-sense strand reads

CCAGTCGTAACAGGTGATGGTCGGCCTCGTTCACGTAGACCGGAAACCGCCACTCAGAAAGTAATATATTTTACGGAAAAATACAAGCACGTAAACAAATAGACACTCTTACTCACACACACGTACGTACGTATTACACAGGTTTACTTGTCGCGAAAGAGTGGGTAGCTGACATGTTAGGGTCGTGTTTTATAACGTTCGTTTAGTTTAGCGCGTGACCAAGGGAGGTGAGGGTTGGGGTTAGGGTTCCC
**************************************************************************************.((((((..((((((.(((.(((....((((...))))....))).)))))))))))))))..****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 M022
male body
............................................................................................................................................................................................................................TAGGGAGGTGACGGTTGGGTT.......... 21 3 7 5.00 35 19 15 0 1
.............................................................................................................................................................................................................................AGGGAGGTGAGGGTTGGGGT.......... 20 0 1 2.00 2 2 0 0 0
..........................TCGTTCACGTAGACCGGAAAC............................................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0
............................................................................................................................................................................................................................TAGGGAGGTGACGGTTGGGTTT......... 22 3 2 1.50 3 1 2 0 0
.....................................................................................................................................................GTCGCGAAAGAGTGGGTAGCT................................................................................. 21 0 1 1.00 1 0 1 0 0
................................................................................................................................................................................TTAGGGTCGTGTTTTGTAAC....................................................... 20 1 1 1.00 1 1 0 0 0
....................................................................................................................................................TGTCGCGAAAGAGTGGGTAGC.................................................................................. 21 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................GGGAGGTGAGGGTTGGGG........... 18 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................AGTGGGTAGCTGACATGTT......................................................................... 19 0 1 1.00 1 1 0 0 0
......................................................................................GCAGGTAAACAAATAGATACT................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0
.............................................................................................................................................................AGAGTGGGTAGCTGACGTGTT......................................................................... 21 1 1 1.00 1 1 0 0 0
...................GTCGGCCTCGTTCACGTAGGC................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
...................................................................................................................................................................GGTAGCTGACATGTTAGGGTC................................................................... 21 0 1 1.00 1 1 0 0 0
..........................................GAAACCGCCACTCAGAAAGTA............................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................................GGAGGTGAGGGTGGGGGTT......... 19 1 2 0.50 1 1 0 0 0
..............................................................................................................................................................................................................................GGGAGGTGAGGAGTGGGGTTA........ 21 2 2 0.50 1 1 0 0 0
....................................................................................................................................................................................................................GCGCGACCAGGGGAGGTGACGG................. 22 3 3 0.33 1 0 0 1 0
..................................................................................................................................................................................................................................GGAGAGGGTTGGGGTTATG...... 19 2 7 0.29 2 2 0 0 0
.............................................................................................................................................................................................................................AGGGAGGTGACGGTTGGGTT.......... 20 2 5 0.20 1 1 0 0 0
..............................................................................................................................................................................................................................GGCAGGTGGGGGTTGGGGATA........ 21 3 11 0.18 2 2 0 0 0
..................................................................................................................................................................................................................................GGTGAGGGTTGGTGGTAGG...... 19 2 12 0.17 2 1 1 0 0
...........................................................................................................................................................................................................................CAAGGGAGGTGAGAGGTGGGTT.......... 22 3 7 0.14 1 1 0 0 0
.......................................................................................................................................CCACAGGTTGACTCGTCGC................................................................................................. 19 3 17 0.12 2 2 0 0 0
.....................................................................................................................................................................................................................................GAGGGTTGGGGTTAGGCTTG.. 20 2 9 0.11 1 1 0 0 0
..................................................................................................................................................................................................................................GGAGAGGGTTGGGGTTAT....... 18 2 12 0.08 1 1 0 0 0
............................................................................................................................................................................................................................TAGGGAGGTGACGGTTGGGT........... 20 3 13 0.08 1 1 0 0 0
...................................................................................................................................................................................................................CGCGTGCCCAACGGAGATG..................... 19 3 14 0.07 1 1 0 0 0
.................................................................................................................................................................................................................................AGGTGGGGGTTGGGGATA........ 18 2 20 0.05 1 0 1 0 0
...........................................................................................................................................................................................................................GTAGGGAGGTGACGGTTGGG............ 20 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:3910874-3911124 - dps_2499 GGT------CAGCATTGTCCACTACCAGCCGGAGCAAGTGCATCTGGCCTTTGGCGGTGAGTCTT----------------------------------TCATTATATAAAATGCCTTTTTATGTTCGTGCATTTGT----TTAT--CTGTGAGAATGAGTGTGTGTGCATGCATGCATAATGTGTCCAAATGAACAGCGCTTTCTCACCCATCGACTGTACAATCCCAGCACAAAATATTGCAAGCAAATCAAATCGCGCACTGGTTCCCTCCACTCCCAACCCCAATCCCAAGGG
droPer2 scaffold_11:472737-472987 - GGT------CAGCATTGTCCACTACCAGCCGGAGCAAGTGCATCTGGCCTTTGGCGGTGAGTCTT----------------------------------TCATTATATAAAATGCCTTTTTATGTTCGTGCATTTGT----TTAT--CTGTGAGAATGAGTGTGTGTGCATGCATGCATAATGTGTCCAAATGAACAGCGCTTTCTCACCCATCGACTGTACAATCCCAGCACAAAATATTGCAAGCAAATCAAATCGCGCACTGGTTCCCTCCACTCCCAACCCCAATCCCAAGGG
droWil2 scf2_1100000004909:7455809-7455895 + TAC------AAATATTGTCCACTATCAACCAGAGCAAGTGCACTTGTCCTTTGGAGGTAAGTTGT--------TGTT----TTT-------TTTTGTTTGCTCTAT-----------------------------------TTTT--CT----------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:7070906-7070963 - GATC---T-GCAAATAGTGCACTATCAGCCAGAGCAGGTGCATCTGGCATTTGGAGGTATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6328:2740887-2741014 - TCT------GAACATAGTACACTATCAGCCAGAGCAGGTGCATCTAGCATTTGGAGGTATGTACCTAATAAATGTAT----TCTA------CACGT------------------------------ATTGCATGTAT----ACAT--TTATATAGATATGTATATATATAT---TGCATATTG------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14853:3531799-3531926 + TGT------AAACATTGTGCACTATCAGCCGGAGCAGGTGCACCTATCATTTGGAGGTATGTGCA--------ACGCCATTTTATATTCATTTATTTTTGCACT------------------------------TA-----TTTTATATGTGTATGTG---GTATATCTATGCAAGTATA---------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13417:2273248-2273347 - ACT------CGGCATCGTCCACTACCAGCCGGAGCAGGTGCATCTGGCATTTGGAGGTGAGTGTA--------TCCT----AGGC------TACAAG--TCGTTATATAAATTAGTCTTCTAAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395982:50178-50233 + ACT------CGGCATTGTCCACTACCAGCCGGAGCAAGTGCATCTGGCATTTGGAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302264:333724-333785 - GGTGGCAGGCAACATCGTTCACTATCAGCCGGAGCAAGTGCATCTGGCCTTCGGAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453882:648629-648712 - GCT------CAACATTGTCCACTTTCAGCCGGAGCAAGTGCACCTGGCCTTCGGAGGTGAGTGCT-------------------T------CGAATTTGGCATTATGTAAATTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490214:584058-584164 + GGT------CAACATTGTCCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCT-------------------T------CGATTTTGGCGTTATGTAAAATAC----CTGTACAGTTGCATTCGTGTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779189:244568-244674 + GGT------CAACATCGTCCACTACCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCT-------------------T------AGATTTCGGCATTATGTAAATCAC----CTGTACAGTTGCATTTGTGTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302126:3723734-3723816 - GGT------CAACATCGTCCACTACCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCT----------------GCAA------CGCTTTTGCCATTATGTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415394:623661-623767 - GGT------CAACATCGTCCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTCCA----------------TCAT------CGCTTTTTGCATTATGTAAATTACCCACCTGCACTGTTGCATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409901:109036-109118 - GGT------CAACATTGTCCACTATCAGCCCGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCT----------------TCTT------CGATTCTCGCATTATGTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:10771407-10771495 - --T------CGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTTTGGAGGTGAGTGCG--------ATCT----TCTT------TACTTTTCGCATTATGTAAATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:10229378-10229466 - --T------CGACATCGTCCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCG--------AGCT----TCTT------TACTTTTCGCATTATGTAAATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_15:1474880-1474994 - GGT------CGACATCGTCCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCG--------AGCT----TCTT------TACTTTTCGCATTATGTAAATTGCTCACCTGCAGCGTTGCATTAGT----TT----------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:11350283-11350410 + GGT------CAACATTGTGCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCG--------AGCT----TCTTCTTTCGTTATTTTCGCATTATGTAAATTGCCCACCTGCACCGTTACATTAGTG------------TTAGAA----------------------TG---------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:4358194-4358312 + --C------CAACATTGTCCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCA---------GCT----TCCT------CACTTTGCGCATTATGTAAATTGTCCACCCACACCGTTGCATTAGTG------------TTAGAA----------------------TG---------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGT------CAGCATTGTCCACTACCAGCCGGAGCAAGTGCATCTGGCCTTTGGCGGTGAGTCTT----------------------------------TCATTATATAAAATGCCTTTTTATGTTCGTGCATTTGT----TTAT--CTGTGAGAATGAGTGTGTGTGCATGCATGCATAATGTGTCCAAATGAACAGCGCTTTCTCACCCATCGACTGTACAATCCCAGCACAAAATATTGCAAGCAAATCAAATCGCGCACTGGTTCCCTCCACTCCCAACCCCAATCCCAAGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................ATGAACAGCGCTTTCTCACCC......................................................................................2112.0020100001000
...........GCATTGTCCACTACCAGCC...........................................................................................................................................................................................................................................................................1912.0020200000000
....................................................................................................................................................TGTGAGAATGAGTGTGTGT..................................................................................................................................1911.0010100000000
............CATTGTCCACTACCAGCCGG.........................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................AGCAAATCAAATCGCGCACTG................................2111.0010100000000
.............ATTGTCCACTACCAGCCGGA........................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................ACCCATCGACTGTACAATCCC.....................................................................2111.0010100000000
...........................................................................................................................GTTCGTGCATTTGT----TTAT--CTGT..................................................................................................................................................2211.0010100000000
...............................GAGCAAGTGCATCTGGCCTTTGGC..................................................................................................................................................................................................................................................2411.0010100000000
.....................CTACCAGCCGGAGCAAGTGCATCTGGC.........................................................................................................................................................................................................................................................2711.0010010000000
...................................AAGTGCATCTGGCCTTTGGC..................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................AATGTGTCCAAATGAACAGC..................................................................................................2011.0010100000000
...............TGTCCACTACCAGCCGGAGC......................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................ATCGCGCACTGGTTCCCTCC.......................2011.0010100000000
..............................................................................................................AATGCCTTTTTATGTTCGTGC......................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................AAATCGCGCACTGGTTCCCTC........................2111.0010100000000
.....................................GTGCATCTGGCCTTTGGCGA................................................................................................................................................................................................................................................2011.0010100000000
.............................CGGAGCAAGTGCATCTGGCCTTTGG...................................................................................................................................................................................................................................................2511.0010100000000
..................................CAAGTGCATCTGGCCTTTGG...................................................................................................................................................................................................................................................2011.0010100000000
.............ATTGTCCACTACCAGCCGGAGCA.....................................................................................................................................................................................................................................................................2311.0010100000000
.............ATTGTCCACTACCAGCCGG.........................................................................................................................................................................................................................................................................1911.0010100000000
...................................AAGTGCATCTGGCCTTTGGCGAGC..............................................................................................................................................................................................................................................2411.0010010000000
.....................................................................................................................................................................................................................................................................ACTGGTTCCCTCCACTCCCAA...............2111.0010100000000
.....................CTACCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................GCAAGCAAATCAAATCGCGCACTGGTTCC...........................2911.0010010000000
.............................................................................................................................................TTAT--CTGTGAGAATGAGTGTGTGT..................................................................................................................................2411.0010100000000
.....................................GTGCATCTGGCCTTTGGCG.................................................................................................................................................................................................................................................1911.0010100000000
........................CCAGCCGGAGCAAGTGCAT..............................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................AGAATGAGTGTGTGTGCATGC............................................................................................................................2111.0010000001000
..............................GGAGCAAGTGCATCTGGCCTT......................................................................................................................................................................................................................................................2111.0010100000000
.........CAGCATTGTCCACTACCAGCCGGA........................................................................................................................................................................................................................................................................2411.0010100000000
..............................GGAGCAAGTGCATCTGGCCTTTGGCGAGC..............................................................................................................................................................................................................................................2911.0010010000000
droPer2
GGT------CAGCATTGTCCACTACCAGCCGGAGCAAGTGCATCTGGCCTTTGGCGGTGAGTCTT----------------------------------TCATTATATAAAATGCCTTTTTATGTTCGTGCATTTGT----TTAT--CTGTGAGAATGAGTGTGTGTGCATGCATGCATAATGTGTCCAAATGAACAGCGCTTTCTCACCCATCGACTGTACAATCCCAGCACAAAATATTGCAAGCAAATCAAATCGCGCACTGGTTCCCTCCACTCCCAACCCCAATCCCAAGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................CAAATGAACAGCGCTTTCTCACCC......................................................................................2411.001100000
...................................................................................................................................................................................................CAGCGCTTTCTCACCCATCGACT...............................................................................2311.001010000
droWil2
TAC------AAATATTGTCCACTATCAACCAGAGCAAGTGCACTTGTCCTTTGGAGGTAAGTTGT--------TGTT----TTT-------TTTTGTTTGCTCTAT-----------------------------------TTTT--CT----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............TGTCCACTATCAACCAGAGC......................................................................................................................................................................................................................................................................2012.00200110
.............ATTGTCCACTATCAACCAGAGCA.....................................................................................................................................................................................................................................................................2312.00201100
....................................AGTGCACTTGTCCTTTGGA..................................................................................................................................................................................................................................................1911.00100001
.........................CAACCAGAGCAAGTGCACTT............................................................................................................................................................................................................................................................2011.00100100
.............................CAGAGCAAGTGCACTTGTC.........................................................................................................................................................................................................................................................1911.00100100
.......................ATCAACCAGAGCAAGTGCACTTGTC.........................................................................................................................................................................................................................................................2511.00100100
....................................AGTGCACTTGTCCTTTGGAGAG...............................................................................................................................................................................................................................................2211.00100100
....................ACTATCAACCAGAGCAAGTGCACTT............................................................................................................................................................................................................................................................2511.00101000
.........................CAACCAGAGCAAGTGCACTTGT..........................................................................................................................................................................................................................................................2211.00100100
..............................................TCCTTTGGAGGTAAGTTGT--------TG..............................................................................................................................................................................................................................2111.00101000
TAC------AAATATTGTCCACTATCAACCAGAG.......................................................................................................................................................................................................................................................................2811.00101000
..........................AACCAGAGCAAGTGCACTT............................................................................................................................................................................................................................................................1911.00101000
.........................CAACCAGAGCAAGTGCACTTGTCCT.......................................................................................................................................................................................................................................................2511.00100010
droVir3
GATC---T-GCAAATAGTGCACTATCAGCCAGAGCAGGTGCATCTGGCATTTGGAGGTATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................ACTATCAGCCAGAGCAGGTGC................................................................................................................................................................................................................................................................2112.002000000000001010000000000000000000000000000000000000000000000000
................GTGCACTATCAGCCAGAGCAG....................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000200000000000000000000000000000
.....................CTATCAGCCAGAGCAGGTGCATCT............................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............AGTGCACTATCAGCCAGAGCAGGT..................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
..............................AGAGCAGGTGCATCTGGCATTTGG...................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.....................................GTGCATCTGGCATTTGGAGA................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
.....................CTATCAGCCAGAGCAGGT..................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
droMoj3
TCT------GAACATAGTACACTATCAGCCAGAGCAGGTGCATCTAGCATTTGGAGGTATGTACCTAATAAATGTAT----TCTA------CACGT------------------------------ATTGCATGTAT----ACAT--TTATATAGATATGTATATATATAT---TGCATATTG------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................ATCAGCCAGAGCAGGTGCATCTAGC.........................................................................................................................................................................................................................................................2511.001000100
...........................................................................AT----TCTA------CACGT------------------------------ATTGCATGTA.................................................................................................................................................................2111.001100000
....................ACTATCAGCCAGAGCAGGTGCT...............................................................................................................................................................................................................................................................2211.001100000
...............AGTACACTATCAGCCAGAGCAGGT..................................................................................................................................................................................................................................................................2411.001100000
.............ATAGTACACTATCAGCCAGAGCAGG...................................................................................................................................................................................................................................................................2511.001100000
.........................CAGCCAGAGCAGGTGCATCTAGCATTT.....................................................................................................................................................................................................................................................2711.001100000
droGri2
TGT------AAACATTGTGCACTATCAGCCGGAGCAGGTGCACCTATCATTTGGAGGTATGTGCA--------ACGCCATTTTATATTCATTTATTTTTGCACT------------------------------TA-----TTTTATATGTGTATGTG---GTATATCTATGCAAGTATA---------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................GCCGGAGCAGGTGCACCTA...........................................................................................................................................................................................................................................................1911.00110
.......................ATCAGCCGGAGCAGGTGCA...............................................................................................................................................................................................................................................................1911.00101
......................TATCAGCCGGAGCAGGTGCA...............................................................................................................................................................................................................................................................2011.00110
droAna3
ACT------CGGCATCGTCCACTACCAGCCGGAGCAGGTGCATCTGGCATTTGGAGGTGAGTGTA--------TCCT----AGGC------TACAAG--TCGTTATATAAATTAGTCTTCTAAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................CACTACCAGCCGGAGCAGGT..................................................................................................................................................................................................................................................................2011.001000010
................GTCCACTACCAGCCGGAGCAGGTGC................................................................................................................................................................................................................................................................2511.001100000
.CT------CGGCATCGTCCACTACCAGCC...........................................................................................................................................................................................................................................................................2311.001100000
..................CCACTACCAGCCGGAGCAGGT..................................................................................................................................................................................................................................................................2111.001000010
..........GGCATCGTCCACTACCAGCCGGAGCAG....................................................................................................................................................................................................................................................................2711.001100000
..............................GGAGCAGGTGCATCTGGC.........................................................................................................................................................................................................................................................1811.001100000
..............TCGTCCACTACCAGCCGGAGC......................................................................................................................................................................................................................................................................2111.001100000
.......................ACCAGCCGGAGCAGGTGCAT..............................................................................................................................................................................................................................................................2011.001100000
....................ACTACCAGCCGGAGCAGGTGC................................................................................................................................................................................................................................................................2111.001010000
ACT------CGGCATCGTCCACTACCAGCC...........................................................................................................................................................................................................................................................................2411.001010000
droBip1
ACT------CGGCATTGTCCACTACCAGCCGGAGCAAGTGCATCTGGCATTTGGAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GGTGGCAGGCAACATCGTTCACTATCAGCCGGAGCAAGTGCATCTGGCCTTCGGAGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCT------CAACATTGTCCACTTTCAGCCGGAGCAAGTGCACCTGGCCTTCGGAGGTGAGTGCT-------------------T------CGAATTTGGCATTATGTAAATTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGT------CAACATTGTCCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCT-------------------T------CGATTTTGGCGTTATGTAAAATAC----CTGTACAGTTGCATTCGTGTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGT------CAACATCGTCCACTACCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCT-------------------T------AGATTTCGGCATTATGTAAATCAC----CTGTACAGTTGCATTTGTGTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGT------CAACATCGTCCACTACCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCT----------------GCAA------CGCTTTTGCCATTATGTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGT------CAACATCGTCCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTCCA----------------TCAT------CGCTTTTTGCATTATGTAAATTACCCACCTGCACTGTTGCATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGT------CAACATTGTCCACTATCAGCCCGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCT----------------TCTT------CGATTCTCGCATTATGTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
--T------CGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTTTGGAGGTGAGTGCG--------ATCT----TCTT------TACTTTTCGCATTATGTAAATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................ACTATCAGCCGGAGCAAGTGCATCTG...........................................................................................................................................................................................................................................................26112.00120000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000500300000
....................ACTATCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATCAGCCGGAGCAAGTGCATCTGT..........................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000001002000000
...................CACTATCAGCCGGAGCAAGTGCATCTG...........................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000
......................TATCAGCCGGAGCAAGTGCATCTG...........................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000
..................TCACTATCAGCCGGAGCAAGTGCA...............................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................CACTATCAGCCGGAGCAAGTGCATCTGT..........................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
......................TATCAGCCGGAGCAAGTGCATCT............................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GACATTGTTCACTATCAGCCGGAGCAAG...................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATCAGCCGGAGCAAGTGCATCTGTCC........................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........GACATTGTTCACTATCAGCCGGAGCA.....................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
....................ACTATCAGCCGGAGCAAGTGCATCT............................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGTTCACTATCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000
..................TCACTATCAGCCGGAGCAAGTGCATCTG...........................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.............ATTGTTCACTATCAGCCGGAGC......................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TCTGTCCTTTGGAGGTGAGTGCG--------ATC.............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................GTTCACTATCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CTATCAGCCGGAGCAAGTG.................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCACTATCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................CACTATCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CACTATCAGCCGGAGCAAGT..................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................ATCAGCCGGAGCAAGTGCA...............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GTTCACTATCAGCCGGAGCA.....................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................GCATCTGTCCTTTGGAGGTGAGTGC.........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCACTATCAGCCGGAGC......................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCACTATCAGCCGGAGCAAGTGCATC.............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................ATCAGCCGGAGCAAGTGCATCT............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............ATTGTTCACTATCAGCCGGAG.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................ATCAGCCGGAGCAAGTGCATCTGT..........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..T------CGACATTGTTCACTATCAGCCGGAGCA.....................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................CACTATCAGCCGGAGCAAGTG.................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGTTCACTATCAGCCGGAGCA.....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCACTATCAGCCGGAGCAAGTGCA...............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ACTATCAGCCGGAGCAAGTGCATCTGT..........................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCCGGAGCAAGTGCATCTG...........................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CACTATCAGCCGGAGCAAGTGCATC.............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ACTATCAGCCGGAGCAAGTGCATC.............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................CGGAGCAAGTGCATCTGTT.........................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CTATCAGCCGGAGCAAGTGCATCTGT..........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................CCGGAGCAAGTGCATCTGTCCTT......................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GACATTGTTCACTATCAGCCGGA........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GCAAGTGCATCTGTCCTTTGGAGAAC..............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GCAAGTGCATCTGTCCTTTGGAGAA...............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................AGCAAGTGCATCTGTCCTTTGGAGAAA..............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCAGCCGGAGCAAGTGCATCTGTCC........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................TTCACTATCAGCCGGAGCAAGTGCATCT............................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................GTGAGTGCG--------ATCT----TCTT------T.............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....................................AGTGCATCTGTCCTTTGGAGGT...............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................ATCTGTCCTTTGGAGGTGAGTGC.........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CAGCCGGAGCAAGTGCATCTGTCCTT......................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AGTGCATCTGTCCTTTGGAGAAA..............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GTCCTTTGGAGGTGAGTGCG--------AT..............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................CAGCCGGAGCAAGTGCATC.............................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
--T------CGACATCGTCCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCG--------AGCT----TCTT------TACTTTTCGCATTATGTAAATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........CGACATCGTCCACTATCAGCC...........................................................................................................................................................................................................................................................................2115.00501400000000000000
.............ATCGTCCACTATCAGCCGGAGC......................................................................................................................................................................................................................................................................2212.00200200000000000000
.........CGACATCGTCCACTATCAGC............................................................................................................................................................................................................................................................................2011.00101000000000000000
................................AGCAAGTGCATCTGGCCTTTGGAGACA..............................................................................................................................................................................................................................................2711.00100000010000000000
...........................GCCGGAGCAAGTGCATCTG...........................................................................................................................................................................................................................................................1911.00101000000000000000
......................TATCAGCCGGAGCAAGTGCATCT............................................................................................................................................................................................................................................................2311.00100100000000000000
..........GACATCGTCCACTATCAGCC...........................................................................................................................................................................................................................................................................2011.00101000000000000000
................................AGCAAGTGCATCTGGCCTTTGGG..................................................................................................................................................................................................................................................2311.00100100000000000000
...................CACTATCAGCCGGAGCAAGTGCATC.............................................................................................................................................................................................................................................................2511.00100000000000010000
.........CGACATCGTCCACTATCAGCCG..........................................................................................................................................................................................................................................................................2211.00100000010000000000
.......................ATCAGCCGGAGCAAGTGCATCTG...........................................................................................................................................................................................................................................................2311.00101000000000000000
.........CGACATCGTCCACTATCAG.............................................................................................................................................................................................................................................................................1911.00101000000000000000
................................AGCAAGTGCATCTGGCCTTTGGA..................................................................................................................................................................................................................................................2311.00100100000000000000
...........................GCCGGAGCAAGTGCATC.............................................................................................................................................................................................................................................................1740.25100000000001000000
droSec2
GGT------CGACATCGTCCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCG--------AGCT----TCTT------TACTTTTCGCATTATGTAAATTGCTCACCTGCAGCGTTGCATTAGT----TT----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................GGAGCAAGTGCATCTGGCCTTTGGA..................................................................................................................................................................................................................................................2511.0010100
.......................ATCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................1811.0010010
.............................CGGAGCAAGTGCATCTGGCC........................................................................................................................................................................................................................................................2011.0010010
...........................................CTGGCCTTTGGAGGTGAGTGC.........................................................................................................................................................................................................................................2111.0010001
.............ATCGTCCACTATCAGCCGGA........................................................................................................................................................................................................................................................................2011.0010010
...................................AAGTGCATCTGGCCTTTGGA..................................................................................................................................................................................................................................................2011.0011000
.................................................TTTGGAGGTGAGTGCG--------AGC.............................................................................................................................................................................................................................1911.0010100
......................TATCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................1911.0010010
droYak3
GGT------CAACATTGTGCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCG--------AGCT----TCTTCTTTCGTTATTTTCGCATTATGTAAATTGCCCACCTGCACCGTTACATTAGTG------------TTAGAA----------------------TG---------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........AACATTGTGCACTATCAGCCG..........................................................................................................................................................................................................................................................................2111.00101000000000
.......................................................................................................TATGTAAATTGCCCACCTGCACC...........................................................................................................................................................................2311.00100100000000
.........CAACATTGTGCACTATCAGCCGGAGC......................................................................................................................................................................................................................................................................2611.00100000010000
..............................GGAGCAAGTGCATCTGGCCTTTGGA..................................................................................................................................................................................................................................................2511.00101000000000
..........AACATTGTGCACTATCAGCCGGAGCAA....................................................................................................................................................................................................................................................................2711.00100000010000
..............................GGAGCAAGTGCATCTGGCCTTTGGAGA................................................................................................................................................................................................................................................2711.00100000010000
...............TGTGCACTATCAGCCGGAGCAAGTG.................................................................................................................................................................................................................................................................2511.00100000010000
.....................CTATCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................2011.00100000010000
.....................CTATCAGCCGGAGCAAGTGCATCTGGC.........................................................................................................................................................................................................................................................2711.00100100000000
................GTGCACTATCAGCCGGAGCAAGT..................................................................................................................................................................................................................................................................2311.00100000010000
................GTGCACTATCAGCCGGAGCAA....................................................................................................................................................................................................................................................................2111.00100000010000
......................TATCAGCCGGAGCAAGTGC................................................................................................................................................................................................................................................................1911.00100000010000
............CATTGTGCACTATCAGCCGGAGCAAGTG.................................................................................................................................................................................................................................................................2811.00101000000000
.......................ATCAGCCGGAGCAAGTGCATCTGGC.........................................................................................................................................................................................................................................................2511.00100100000000
..........AACATTGTGCACTATCAGCCGGAGCA.....................................................................................................................................................................................................................................................................2611.00100000010000
...........ACATTGTGCACTATCAGCCGGAGCAAGT..................................................................................................................................................................................................................................................................2811.00100000010000
droEre2
--C------CAACATTGTCCACTATCAGCCGGAGCAAGTGCATCTGGCCTTTGGAGGTGAGTGCA---------GCT----TCCT------CACTTTGCGCATTATGTAAATTGTCCACCCACACCGTTGCATTAGTG------------TTAGAA----------------------TG---------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................GGAGCAAGTGCATCTGGCCTTTGGA..................................................................................................................................................................................................................................................2514.0043000100
...................CACTATCAGCCGGAGCAAGT..................................................................................................................................................................................................................................................................2012.0020000200
..............................GGAGCAAGTGCATCTGGCCTTTGGAG.................................................................................................................................................................................................................................................2612.0022000000
......................TATCAGCCGGAGCAAGTGCATCT............................................................................................................................................................................................................................................................2311.0010000010
................GTCCACTATCAGCCGGAGCAAGT..................................................................................................................................................................................................................................................................2311.0010000100
..................CCACTATCAGCCGGAGCAAGTGCATCTG...........................................................................................................................................................................................................................................................2811.0010000010
.................................GCAAGTGCATCTGGCCTTTGGA..................................................................................................................................................................................................................................................2211.0010000010
..........AACATTGTCCACTATCAGCC...........................................................................................................................................................................................................................................................................2011.0011000000
...............................GAGCAAGTGCATCTGGCCTTTGGA..................................................................................................................................................................................................................................................2411.0011000000
.....................................GTGCATCTGGCCTTTGGAGA................................................................................................................................................................................................................................................2011.0011000000
....................ACTATCAGCCGGAGCAAGTGCATC.............................................................................................................................................................................................................................................................2411.0011000000
.......................................................................................................................CCACACCGTTGCATTAGTG------------T..................................................................................................................................................2011.0010010000
.....................................GTGCATCTGGCCTTTGGA..................................................................................................................................................................................................................................................1811.0011000000
.....................................GTGCATCTGGCCTTTGGAG.................................................................................................................................................................................................................................................1911.0010000100
..........AACATTGTCCACTATCAGCCGGAGCAAGT..................................................................................................................................................................................................................................................................2911.0010000100

Generated: 05/18/2015 at 04:45 AM