ID:

dps_2485

 Coordinate:

XL_group1a:3202195-3202345 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.4 -30.3 -30.2

Flybase annnotation

CDS [Dpse\GA22958-cds]; exon [dpse_GLEANR_11338:1]; intron [Dpse\GA22958-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTCACCCTCAGCCGAAAGGGCGTCAGCATTTCGTCGCGTCCTCCCCAGCAGTAAAAGGGGAATGTAGGACGCGGGCTATCCCCTTCACAAAACAACAGCAGATCAAGAAGTTTTCCAACGTTAAGTTTTATAGTTTATGTTTTTCTTCTTTTTCCCAGGAGGGACGGCTCGAAGGGCCCTGATTTTGTTATAATAATCCGTAGGAAGCTTGGCCCTTGTTAGCTCTAAGTCCTGTACAGAAACCCCCATTA
**************************************************....(((((((...(((........)))))))))).....(((((...(((...((((((......(((((...............)))))...))))))..((((....)))).(((((...))))))))...)))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 SRR902012
CNS imaginal disc
 GSM444067
head
 V112
male body		 GSM343916
embryo
 M022
male body
.....................................................AAAGGGGAATGTAGGACGC................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
...................................................TAAAAGGGGAATGTAGGACGCGGGTTGG............................................................................................................................................................................ 28 3 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................TCCGTAGGAAGCTTGGCCCTTG................................. 22 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TAAGTCCTGTACAGAAACCCC..... 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................................TAAAAGGGGAATGTAGGACGCGG................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
......................................................AAGGGGAATGTAGGACGCG.................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
...................................................TAAAAGGGGAATGTAGGACGCGGGC............................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
......................................................AAGGGGAATGTAGGACGCGG................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................TGGAAGGGTCGTGATTTTGTT.............................................................. 21 3 4 0.25 1 0 0 0 1 0 0 0
...........................................................................................ACAACAGGAGATCAAAGAGTT........................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0 0
...........................................................................................ACAACAGGAGATCAAGGAGCT........................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0 0
.............................................................................................................................................................GTGTGGACGGCTCGAAGGGC.......................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0
............................................................................................CAAGTGCAGAGCAAGAAGTT........................................................................................................................................... 20 3 17 0.06 1 0 1 0 0 0 0 0
.................................................................................................................................................................GGACGAGTCTAAGGGCCC........................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0
...............................................................GTTGGACGCGGGTTAGCC.......................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1
....................................................................................................................................GTTTGTGTTTATCTTCTTT.................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

CAGTGGGAGTCGGCTTTCCCGCAGTCGTAAAGCAGCGCAGGAGGGGTCGTCATTTTCCCCTTACATCCTGCGCCCGATAGGGGAAGTGTTTTGTTGTCGTCTAGTTCTTCAAAAGGTTGCAATTCAAAATATCAAATACAAAAAGAAGAAAAAGGGTCCTCCCTGCCGAGCTTCCCGGGACTAAAACAATATTATTAGGCATCCTTCGAACCGGGAACAATCGAGATTCAGGACATGTCTTTGGGGGTAAT
**************************************************....(((((((...(((........)))))))))).....(((((...(((...((((((......(((((...............)))))...))))))..((((....)))).(((((...))))))))...)))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M062
head
 SRR902010
ovaries
 GSM343916
embryo
 GSM444067
head
 V112
male body
.............................................................................................................................................................................................................TCGAACCGGGACCATTCAAGA......................... 21 3 1 19.00 19 18 1 0 0 0 0
.............................................................................................................................................................................................................TCGAACCGGGACCATTCAAG.......................... 20 3 5 8.40 42 42 0 0 0 0 0
..............................................................................................................................................................................................................CGAACCGGGACCATTCAAGA......................... 20 3 7 1.43 10 9 0 0 0 0 1
............................AAAGCAGTGCAGGAGGGGT............................................................................................................................................................................................................ 19 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................TCGAACCGGGACCATTCAA........................... 19 3 18 0.78 14 12 0 0 0 2 0
.AGTGGGAGTCGGCGTACCC....................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
...........................................................................................TGTTGTCCTCTAGTTTCTCAA........................................................................................................................................... 21 3 4 0.50 2 2 0 0 0 0 0
...................................................................................................................................................................................................................CGGGAATAGTCGAGATTAAGGA.................. 22 3 2 0.50 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................................AGGAGATGTGTTTGGGGGTGAT 22 3 3 0.33 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................GGAACAATCGAGAGGCAGGT.................. 20 3 6 0.17 1 0 0 0 0 1 0
............................................................................................................................................................................................................GTCGAACCGGGACCATTCGA........................... 20 3 6 0.17 1 0 1 0 0 0 0
..........................................................................................TTGTTGTCCTCTAGTTTCTC............................................................................................................................................. 20 3 20 0.10 2 2 0 0 0 0 0
............................................................................................................................................................................................................GTCGAACCGGGACCATTCG............................ 19 3 11 0.09 1 1 0 0 0 0 0
...........................................................................................................................................AAAAAGAAGGAAAGAGGTCCTC.......................................................................................... 22 3 12 0.08 1 1 0 0 0 0 0
......................................................................................................................................................................................AAAAAATTATTAGTAGGCAT................................................. 20 3 20 0.05 1 1 0 0 0 0 0
............................................................................................GTTGTCCTCTAGTTTCTCAA........................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:3202145-3202395 + dps_2485 GTCACCCTCAGCCGAAAGGGCGTCAGCATTTCGTCGCGTCCTCCCCAGCAGTAAAAGGGGAATGTAGGACGCGGGCTATCCCCTTCACAAAACAACAGCAGATCAAGAAGTTTTCCAACGTTAAGTTTTATAGTTTATGTTTTTCTTCTTTTTCCCAGGAGGGACGGCTCGAAGGGCCCTGATTTTGTTATAATAATCCGTAGGAAGCTTGGCCCTTGTTAGCTCTAAGTCCTGTACAGAAACCCCCATTA
droPer2 scaffold_12:13022-13272 - GTCACCCACAGCCGAAAGGGCGTCAGCATTTCGTCGCGTCCTCCCCAGCAGTAAAAAGGGAATGTAGGACGCGGGCTATCCCCTTCACAAAACAACAGCAGATCAAGAAGTTGTCCAACGTTAAGTTTCATAGTTTATGTTTTTCTTCTTTTTCCCAGGAGGGACGGCTCGAAGGGCCCTGATTTTGTTATAATAATCCGTAGGAAGCTTGGCCCTTGTTAGCTCTAAGTCCTGTACAGAAACCCCCATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTCACCCTCAGCCGAAAGGGCGTCAGCATTTCGTCGCGTCCTCCCCAGCAGTAAAAGGGGAATGTAGGACGCGGGCTATCCCCTTCACAAAACAACAGCAGATCAAGAAGTTTTCCAACGTTAAGTTTTATAGTTTATGTTTTTCTTCTTTTTCCCAGGAGGGACGGCTCGAAGGGCCCTGATTTTGTTATAATAATCCGTAGGAAGCTTGGCCCTTGTTAGCTCTAAGTCCTGTACAGAAACCCCCATTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................AAAGGGGAATGTAGGACGC...................................................................................................................................................................................1911.0010000000001
....................................................................................................................................................................................................TCCGTAGGAAGCTTGGCCCTTG.................................2211.0010100000000
.................................................................................................................................................................................................................................TAAGTCCTGTACAGAAACCCC.....2111.0010100000000
...................................................TAAAAGGGGAATGTAGGACGCGG.................................................................................................................................................................................2311.0010000000010
......................................................AAGGGGAATGTAGGACGCG..................................................................................................................................................................................1911.0010000000010
...................................................TAAAAGGGGAATGTAGGACGCGGGC...............................................................................................................................................................................2511.0010000000010
......................................................AAGGGGAATGTAGGACGCGG.................................................................................................................................................................................2011.0010000000010
droPer2
GTCACCCACAGCCGAAAGGGCGTCAGCATTTCGTCGCGTCCTCCCCAGCAGTAAAAAGGGAATGTAGGACGCGGGCTATCCCCTTCACAAAACAACAGCAGATCAAGAAGTTGTCCAACGTTAAGTTTCATAGTTTATGTTTTTCTTCTTTTTCCCAGGAGGGACGGCTCGAAGGGCCCTGATTTTGTTATAATAATCCGTAGGAAGCTTGGCCCTTGTTAGCTCTAAGTCCTGTACAGAAACCCCCATTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................AGCTCTAAGTCCTGTACAGAAACC.......2411.001010000

Generated: 05/18/2015 at 04:42 AM