ID:

dps_2480

 Coordinate:

XL_group1a:2687775-2687925 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.2 -9.6 -9.4

Flybase annnotation

exon [dpse_GLEANR_11011:2]; CDS [Dpse\GA22768-cds]; intron [Dpse\GA22768-in]

No Repeatable elements found

mature
  1. XL_group1a:715213-715234 -
  2. XL_group1a:1668916-1668937 -
  3. dps_2480  XL_group1a:2687875-2687896 -
  4. Unknown_singleton_94:3593-3614 -
  5. Unknown_singleton_3900:425-446 +
  6. Unknown_singleton_1198:1886-1907 -
star
  1. XL_group1a:1668843-1668869 -
  2. dps_2480  XL_group1a:2687802-2687828 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATTACGATCAAATCCAACGATGAAAGCGCTTCCATGTGGTCGATGAGGGTGGCTGGAAACTTGTAAATATCAGTGTGTCAGAGTAGATAGGCGATATGCGCGAGTATTAGTTTTAGTTCCTTTCCTTCTAGCTGCTCATTTCTTTATGATAAACCAAACAAACCGAATCACACGAATTTAACTTTTAATGTTGATCCTAGGGTCAGTACAATAGTGTGGTTCCAAGGTATTATTCCAATATGAAGAAATG
*******************************************************************************..((((((.(((((...((((....))))..))................))).))))))....................................***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
 M062
head
 GSM343916
embryo
 V112
male body
...............................................................................CAGAGTAGATAGGCGATATGCG...................................................................................................................................................... 22 0 6 1.00 6 0 6 0 0 0 0 0
................................................................................................................................................................................................................................AAGGTATTATTCCAATATGAAG..... 22 0 1 1.00 1 1 0 0 0 0 0 0
............................................TGAGGGCGGCTGGAAACTT............................................................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................AAACTTGTAAATATCAGTGTGTCAGAG....................................................................................................................................................................... 27 0 9 0.56 5 5 0 0 0 0 0 0
.........................................................AAACTTGTAAATATCAGTGTGTCAGA........................................................................................................................................................................ 26 0 9 0.56 5 4 0 0 1 0 0 0
...................................................................................................................................................TGATAAACCAAACAAACCGAATCACAC............................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0
............................................................................TGTCAGAGTAGATAGGCGATATGC....................................................................................................................................................... 24 0 6 0.50 3 0 2 1 0 0 0 0
.........................................................AAACTTGTAAATATCAGTGTGTC........................................................................................................................................................................... 23 0 9 0.44 4 1 0 0 1 0 1 1
..........................................................................TGTGTCAGAGTAGATAGGCGATA.......................................................................................................................................................... 23 0 5 0.40 2 0 0 2 0 0 0 0
....................................................................TATCAGTGTGTCAGAGTAGATAGGC.............................................................................................................................................................. 25 0 7 0.29 2 0 0 2 0 0 0 0
........................................................................................TAGGCGATATGCGCGAGTAATAGT........................................................................................................................................... 24 1 4 0.25 1 1 0 0 0 0 0 0
..TTACGATCAAATCCAACGATGAAAGCG.............................................................................................................................................................................................................................. 27 0 4 0.25 1 1 0 0 0 0 0 0
...............................................................................CAGAGTAGATAGGCGATATGCGC..................................................................................................................................................... 23 0 5 0.20 1 0 1 0 0 0 0 0
............................................................................TGTCAGAGTAGATAGGCGATATGCGC..................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0 0
...............................................................................CAGAGTAGCTAGGCGATATGCGC..................................................................................................................................................... 23 1 5 0.20 1 0 0 1 0 0 0 0
............................................................................TGTCACAGTAGATAGGCGATA.......................................................................................................................................................... 21 1 6 0.17 1 0 0 0 0 1 0 0
..............................TTCCATGTGGTCGATGAGGTA........................................................................................................................................................................................................ 21 2 7 0.14 1 1 0 0 0 0 0 0
...........................CGCTTCCATGTGGTCGATGAGGG......................................................................................................................................................................................................... 23 0 7 0.14 1 1 0 0 0 0 0 0
.....................TGAAAGCGCTTCCATGTGGTCGAT.............................................................................................................................................................................................................. 24 0 7 0.14 1 1 0 0 0 0 0 0
...........................CGCTTCCATGTGGTCGATGAGG.......................................................................................................................................................................................................... 22 0 7 0.14 1 1 0 0 0 0 0 0
..............................TTCCATGTGGTCGATGAGGGT........................................................................................................................................................................................................ 21 0 7 0.14 1 1 0 0 0 0 0 0
.....................TGAAAGCGCTTCCATGTGGTCG................................................................................................................................................................................................................ 22 0 7 0.14 1 1 0 0 0 0 0 0
.....................TGAAAGCGCTTCCATGTGGTCGATG............................................................................................................................................................................................................. 25 0 7 0.14 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................TAGGGTCAGTACAATAG.................................... 17 0 8 0.13 1 0 1 0 0 0 0 0
......................................................................TCAGTGTGTCAGAGTAGATAGGCG............................................................................................................................................................. 24 0 8 0.13 1 1 0 0 0 0 0 0
...............................................................GTAAATATCAGTGTGTCAGAGTAG.................................................................................................................................................................... 24 0 8 0.13 1 0 0 1 0 0 0 0
..........................................................................TGTGTCAGAGTAGATAGGC.............................................................................................................................................................. 19 0 8 0.13 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................AGGGTCAGTACAATAGTG.................................. 18 0 8 0.13 1 1 0 0 0 0 0 0
.....................................................................ATCAGTGGGTCAGAGTAGATAGGC.............................................................................................................................................................. 24 1 8 0.13 1 0 0 1 0 0 0 0
................AACGATGAAAGCGCTTCCATGT..................................................................................................................................................................................................................... 22 0 8 0.13 1 1 0 0 0 0 0 0
.............TCCAACGATGAAAGCGCTTCCATG...................................................................................................................................................................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0
.....................TGAAAGCGCTTCCATGTGG................................................................................................................................................................................................................... 19 0 8 0.13 1 1 0 0 0 0 0 0
................................................................TAAATATCAGTGTATCAGAGTAGATA................................................................................................................................................................. 26 1 9 0.11 1 0 1 0 0 0 0 0
..........................................................AACTTGTAAATATCAGTGTGTCA.......................................................................................................................................................................... 23 0 9 0.11 1 1 0 0 0 0 0 0
.........................................................AAACTTGTAAATATCAGTGTGTCAGAGT...................................................................................................................................................................... 28 0 9 0.11 1 0 0 0 1 0 0 0
.........................................................AAACTTGTAAATATCAGTGTGTCAGAC....................................................................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0 0 0
.........................................................AAACTTGTAAATATCAGTGTGTCA.......................................................................................................................................................................... 24 0 9 0.11 1 1 0 0 0 0 0 0
..........................................................AACTTGTAAATATCAGTGTGTCAGAG....................................................................................................................................................................... 26 0 9 0.11 1 1 0 0 0 0 0 0
......................................................................TCAGTGTGTCAGAGTAGA................................................................................................................................................................... 18 0 10 0.10 1 0 1 0 0 0 0 0
...........................................ATGAGGATGGCTGGGCACT............................................................................................................................................................................................. 19 3 19 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

GTAATGCTAGTTTAGGTTGCTACTTTCGCGAAGGTACACCAGCTACTCCCACCGACCTTTGAACATTTATAGTCACACAGTCTCATCTATCCGCTATACGCGCTCATAATCAAAATCAAGGAAAGGAAGATCGACGAGTAAAGAAATACTATTTGGTTTGTTTGGCTTAGTGTGCTTAAATTGAAAATTACAACTAGGATCCCAGTCATGTTATCACACCAAGGTTCCATAATAAGGTTATACTTCTTTAC
*****************************************************************************..((((((.(((((...((((....))))..))................))).))))))....................................******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 SRR902011
testis
 M040
female body
 V112
male body		 GSM343916
embryo
 M022
male body		 M062
head
................................................................ATTTATAGTCACACAGTCTCATCTA.................................................................................................................................................................. 25 0 9 7.22 65 38 27 0 0 0 0 0
............................................................GAACATTTATAGTCACACAGTCTCAT..................................................................................................................................................................... 26 0 8 3.38 27 15 10 1 0 0 0 1
GTAATGCTAGTTTAGGTTGCTACTTT................................................................................................................................................................................................................................. 26 0 5 2.20 11 6 4 0 0 0 1 0
GTAATGCTAGTTTAGGTTGCTACT................................................................................................................................................................................................................................... 24 0 5 1.20 6 3 2 1 0 0 0 0
........................................AGCTACTCCCACCGACCTTTGAACATT........................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0
...........................................TACTCCCACCGACCTTTGAACATT........................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TATCACACCAAGGTTCCATAATAAGGT............. 27 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................CACCAGGGTTCCATAATAAGTA............. 22 3 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................AGGAAAGGAAGATCGACGAGTAAAGA........................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0
.................................................................................................................................................................................................................GTTATCACACCAAGGTTCCATAAT.................. 24 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................GGAAGATCGACGAGTAAAGAAATACTAT................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................GTTTGTTTGGCTTAGTGTGCTTAAAT...................................................................... 26 0 3 1.00 3 0 3 0 0 0 0 0
................................................................ATTTATAGTCACACAGTCTCATCTAT................................................................................................................................................................. 26 0 9 0.89 8 6 2 0 0 0 0 0
................................................................ATTTATATTCACACAGTCTCATCTA.................................................................................................................................................................. 25 1 9 0.78 7 6 1 0 0 0 0 0
...........................................................TGAACATTTATAGTCACACAGTCTCAT..................................................................................................................................................................... 27 0 8 0.75 6 2 3 1 0 0 0 0
..................................................................TTATAGTCACACAGTCTCATCTAT................................................................................................................................................................. 24 0 9 0.67 6 6 0 0 0 0 0 0
............................................................GAACATTTATAGTCACACAGTCTCATCT................................................................................................................................................................... 28 0 8 0.63 5 4 1 0 0 0 0 0
GTAATGCTAGTTTAGGGTGCTACTTT................................................................................................................................................................................................................................. 26 1 5 0.60 3 0 3 0 0 0 0 0
..AATGCTAGTTTAGGTTGCTACTTT................................................................................................................................................................................................................................. 24 0 5 0.60 3 0 3 0 0 0 0 0
..AATGCTAGTTTAGGGTGCTACTTT................................................................................................................................................................................................................................. 24 1 5 0.60 3 0 3 0 0 0 0 0
...........TTAGGTTGCTACTTTCGCG............................................................................................................................................................................................................................. 19 0 7 0.57 4 4 0 0 0 0 0 0
.......................................................................................................TCATAATCAAAATCAAGGAAAGGAAG.......................................................................................................................... 26 0 7 0.57 4 1 1 2 0 0 0 0
..................................................................TTATAGTCACACAGTCTCATCTA.................................................................................................................................................................. 23 0 9 0.56 5 3 2 0 0 0 0 0
...............GTTGCTACTTTCGCGAAGGTACACC................................................................................................................................................................................................................... 25 0 8 0.50 4 0 0 4 0 0 0 0
............................................................GAACATTTATAGTCACACAGTCTCATC.................................................................................................................................................................... 27 0 8 0.50 4 2 2 0 0 0 0 0
.....................ACTTTCGCGAAGGTACACCAGCTACT............................................................................................................................................................................................................ 26 0 7 0.43 3 0 2 0 1 0 0 0
..........................CGCGAAGGTACACCAGCTACTCCCAC....................................................................................................................................................................................................... 26 0 7 0.43 3 0 3 0 0 0 0 0
........................................................................................................CATAATCAAAATCAAGGAAAGGAAG.......................................................................................................................... 25 0 7 0.43 3 0 3 0 0 0 0 0
........................................................................................................CATAATCAAAATCAAGGAAAGGAA........................................................................................................................... 24 0 7 0.43 3 0 3 0 0 0 0 0
GTAATGCTAGTTTAGGTTGCTACTT.................................................................................................................................................................................................................................. 25 0 5 0.40 2 0 2 0 0 0 0 0
AAAATGCTAGTTTAGGTTGCTACTTT................................................................................................................................................................................................................................. 26 2 5 0.40 2 2 0 0 0 0 0 0
.TAATGCTAGTTTAGGTTGCTACT................................................................................................................................................................................................................................... 23 0 5 0.40 2 0 2 0 0 0 0 0
................TTGCTACTTTCGCGAAGGTACACC................................................................................................................................................................................................................... 24 0 8 0.38 3 0 0 3 0 0 0 0
.........................................................................................................ATAATCAAAATCAAGGAAAGGAAG.......................................................................................................................... 24 0 8 0.38 3 0 2 1 0 0 0 0
..........................................................TGGAACATTTATAGTCACACAGTCTCAT..................................................................................................................................................................... 28 1 8 0.38 3 3 0 0 0 0 0 0
............................................................GAACATTTATATTCACACAGTCTCAT..................................................................................................................................................................... 26 1 8 0.38 3 2 1 0 0 0 0 0
...............................................................CATTTATAGTCACACAGTCTCAT..................................................................................................................................................................... 23 0 8 0.38 3 1 2 0 0 0 0 0
...TCTCTAGTTTAGGTTGCTACTTTCGCGA............................................................................................................................................................................................................................ 28 3 7 0.29 2 2 0 0 0 0 0 0
.....GTTAGTTTAGGTTGCTACTTTCGCG............................................................................................................................................................................................................................. 25 1 7 0.29 2 2 0 0 0 0 0 0
.......................................................................................................TCATAATCAAAATCAAGGAAAGGAA........................................................................................................................... 25 0 7 0.29 2 0 2 0 0 0 0 0
..............................................................ACATTTATAGTCACACAGTCTCAT..................................................................................................................................................................... 24 0 8 0.25 2 1 0 1 0 0 0 0
.................................................................................CTCATCTATCCGCTATACGCGCTCAT................................................................................................................................................ 26 0 4 0.25 1 0 0 1 0 0 0 0
......................................................................................CTATCCGCTATACGCGCTCATAATCAA.......................................................................................................................................... 27 0 4 0.25 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................AGGTTCCATAAGAAGGTTTGA......... 21 3 4 0.25 1 0 0 0 0 1 0 0
..........................................................................................CCGCTATACGCGCTAATTATCAAAAT....................................................................................................................................... 26 2 4 0.25 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................CTGGGCTCCGAGTCATGTTAT..................................... 21 3 4 0.25 1 0 0 0 1 0 0 0
...................................................................................................................................................................GGCTTAGTGTGCTTAAATTGAAAAT............................................................... 25 0 4 0.25 1 0 1 0 0 0 0 0
..................................................................TTATAGTCACACAGTCTCATCTATC................................................................................................................................................................ 25 0 8 0.25 2 0 2 0 0 0 0 0
............................................................................................................ATCAAAATCAAGGAAAGGAAGAT........................................................................................................................ 23 0 8 0.25 2 0 0 2 0 0 0 0
.................................................................................CTCATCTATCCGCTATACGCGCTAAT................................................................................................................................................ 26 1 4 0.25 1 0 0 1 0 0 0 0
........................................................................................ATCCGCTATACGCGCTCATTATCAAAAT....................................................................................................................................... 28 1 4 0.25 1 0 0 1 0 0 0 0
....................................................................ATAGTCACACAGTCTCATCTAT................................................................................................................................................................. 22 0 9 0.22 2 1 1 0 0 0 0 0
....................................................................ATAGTCACACAGTCTCATCTA.................................................................................................................................................................. 21 0 9 0.22 2 0 2 0 0 0 0 0
..................................................................TTATATTCACACAGTCTCATCTA.................................................................................................................................................................. 23 1 9 0.22 2 2 0 0 0 0 0 0
..................................................................TTATATTCACACAGTCTCATCTAT................................................................................................................................................................. 24 1 9 0.22 2 0 2 0 0 0 0 0
.................................................................TTTATAGTCACACAGTCTCATCTA.................................................................................................................................................................. 24 0 9 0.22 2 1 1 0 0 0 0 0
.........................................................TTTGAACATTTATAGTCACACAGT.......................................................................................................................................................................... 24 0 9 0.22 2 0 0 2 0 0 0 0
....................................................................ATAGTCACACAGTCTCATCTATCCGCT............................................................................................................................................................ 27 0 5 0.20 1 0 0 1 0 0 0 0
..AATGCTAGTTTAGGTTGCTACT................................................................................................................................................................................................................................... 22 0 5 0.20 1 0 0 1 0 0 0 0
......................................................................AGTCACACAGTCTCATCTATCCGCTAT.......................................................................................................................................................... 27 0 5 0.20 1 0 0 1 0 0 0 0
.........................................................................CACACAGTCTCATCTATCCGCTAT.......................................................................................................................................................... 24 0 5 0.20 1 0 0 1 0 0 0 0
.TAATGCTAGTTTAGGTTGCTACTTT................................................................................................................................................................................................................................. 25 0 5 0.20 1 0 1 0 0 0 0 0
GTAATGCTAGTTTAGGTTGCT...................................................................................................................................................................................................................................... 21 0 5 0.20 1 0 0 1 0 0 0 0
...........TTAGGTTGCTACTTTCGCGAAGG......................................................................................................................................................................................................................... 23 0 6 0.17 1 0 0 1 0 0 0 0
........................TTCGCGAAGGTACACCAGCTACTCCC......................................................................................................................................................................................................... 26 0 7 0.14 1 0 0 0 1 0 0 0
........AGTTTAGGTTGCTACTTTCGCGAAG.......................................................................................................................................................................................................................... 25 0 7 0.14 1 0 0 1 0 0 0 0
......CTAGTTTAGGTTGCTACTTTCGCGA............................................................................................................................................................................................................................ 25 0 7 0.14 1 0 0 1 0 0 0 0
......................................................................................................CTCATAATCAAAATCAAGGAAAGGAAG.......................................................................................................................... 27 0 7 0.14 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................AGGATCCCAGTCATGTTATCA................................... 21 0 7 0.14 1 0 0 1 0 0 0 0
......................................................................................................ATCATAATCAAAATCAAGGAAAGGAAG.......................................................................................................................... 27 1 7 0.14 1 1 0 0 0 0 0 0
......................................................................................................................AGGACATGAAGATCGACG................................................................................................................... 18 2 7 0.14 1 0 0 1 0 0 0 0
.....GCTAGTTTAGGTTGCTACTTTCGC.............................................................................................................................................................................................................................. 24 0 7 0.14 1 0 0 1 0 0 0 0
........AGTTTAGGTTGCTACTTTCGCGA............................................................................................................................................................................................................................ 23 0 7 0.14 1 0 0 1 0 0 0 0
...ATGCTAGTTTAGGGTGCTACTTT................................................................................................................................................................................................................................. 23 1 7 0.14 1 0 1 0 0 0 0 0
...........TTAGGTTGCTACTTTCGCGAAG.......................................................................................................................................................................................................................... 22 0 7 0.14 1 0 0 1 0 0 0 0
.....GCTTGTTTAGGTTGCTACTTTCGCG............................................................................................................................................................................................................................. 25 1 7 0.14 1 0 1 0 0 0 0 0
.......................................................................................................TCATAATCAAAATCAAGGAAAGGAAGAT........................................................................................................................ 28 0 7 0.14 1 0 0 0 1 0 0 0
..........................CGCGAAGGTACACCAGCTACTCCC......................................................................................................................................................................................................... 24 0 7 0.14 1 0 1 0 0 0 0 0
.............................................................................................................TCAAAATCAAGGAAAGGAAGAT........................................................................................................................ 22 0 8 0.13 1 0 0 1 0 0 0 0
.......................................................................................................TAATTATCAAAATCAAGGAAAGGAA........................................................................................................................... 25 2 8 0.13 1 0 0 1 0 0 0 0
...............GTTGCTACTTTCGCGAAGGTAC...................................................................................................................................................................................................................... 22 0 8 0.13 1 0 0 1 0 0 0 0
.............................................................AACATTTATAGTCACACAGTCTCATCTA.................................................................................................................................................................. 28 0 8 0.13 1 0 1 0 0 0 0 0
.....................................................................................................................AAGGACATGAAGATCGAC.................................................................................................................... 18 2 8 0.13 1 0 0 1 0 0 0 0
.............................................................AACATTTATAGTCACACAGTCTCAT..................................................................................................................................................................... 25 0 8 0.13 1 0 1 0 0 0 0 0
.................................................................................................ACGCGCTCATAATCAAAATCAAGGAA................................................................................................................................ 26 0 8 0.13 1 0 0 1 0 0 0 0
...........................................................TGAACATTTATAGTCACACAGTCTCATCT................................................................................................................................................................... 29 0 8 0.13 1 0 0 1 0 0 0 0
...................................................................................................GCGCTCATAATCAAAATCAAGGAAA............................................................................................................................... 25 0 8 0.13 1 0 0 1 0 0 0 0
.................TGCTACTTTCGCGAAGGTACACC................................................................................................................................................................................................................... 23 0 8 0.13 1 0 0 1 0 0 0 0
............................................................AAACATTTATAGTCACACAGTCTCATCT................................................................................................................................................................... 28 1 8 0.13 1 0 1 0 0 0 0 0
..............AGTTGCTACTTTCGCGAAGGT........................................................................................................................................................................................................................ 21 1 8 0.13 1 0 0 1 0 0 0 0
...............GTTGCTACTTTCGCGAAGGTACACCA.................................................................................................................................................................................................................. 26 0 8 0.13 1 0 0 1 0 0 0 0
.................................................................................................ACGCGCTCATAATCAAAATCAAGGAAA............................................................................................................................... 27 0 8 0.13 1 0 0 1 0 0 0 0
....................................................................ATAGTCACACAGTCTCATCTATC................................................................................................................................................................ 23 0 8 0.13 1 1 0 0 0 0 0 0
..............GGTTGCTACTTTCGCGAAGGTACA..................................................................................................................................................................................................................... 24 0 8 0.13 1 0 0 1 0 0 0 0
................................................................ATTTTTAGTCACACAGTCTCATCTA.................................................................................................................................................................. 25 1 9 0.11 1 1 0 0 0 0 0 0
.................................................................TTTATAGTCACACAGTCTCATCTAT................................................................................................................................................................. 25 0 9 0.11 1 1 0 0 0 0 0 0
.........................................................TTTGAACATTTATAGTCACACAGTGG........................................................................................................................................................................ 26 2 9 0.11 1 0 0 1 0 0 0 0
...................................................................TATAGTCACACAGTCTCATCTA.................................................................................................................................................................. 22 0 9 0.11 1 0 1 0 0 0 0 0
.................................................................................................ACGCGCTCATAATCAAAAT....................................................................................................................................... 19 0 9 0.11 1 0 0 1 0 0 0 0
................................................................ATTTATAGTCACACAGTCTCATCGA.................................................................................................................................................................. 25 1 9 0.11 1 0 1 0 0 0 0 0
......................................................................AGTCACACAGTCTCATCTAT................................................................................................................................................................. 20 0 10 0.10 1 0 1 0 0 0 0 0
..................................................................GTGTAGTCACACAGTCTCAT..................................................................................................................................................................... 20 2 10 0.10 1 0 1 0 0 0 0 0
........................................................................................................................................................................AGTGTGCTTATATTGAAT................................................................. 18 2 10 0.10 1 0 0 0 0 1 0 0
.................................................................TTTTTAGTCGCGCAGTCTCA...................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0
...................................................................................TATCTGTCCGCTAAACGCG..................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:2687725-2687975 - dps_2480 CATTACGATCAAATCCAACGATGAAAGCGCTTCCATGTGGTCGATGAGGGTGGCTGGAAACTTGTAAATATCAGTGTGTCAGAGTAGATAGGCGATATGCGCGAGTATTAGTTTTAGTTCCTTTCCTTCTAGCTGCTCATTTCTTTATGATAAACCAAACAAACCGAATCACACGAATTTAACTTTTAATGTTGATCCTAGGGTCAGTACAATAGTGTGGTTCCAAGGTATTATTCCAATATGAAGAAATG
droPer2 scaffold_1218:1320-1570 + CATTACGATCAAATCCAACGATGAAAGCGCTTCCATGTGGTCGATGAGGGTGGCTGAAAACTTGTAAATATCAGTGTGTCAGAGTAGATAGGCGATACGCGCGAGTATTAGTTTTAGTTCCTTTCCTTCTAGCTGCACATTTCTTTATGATAAGCCAAACAAACCGAATCCCACGAATTTAACTTTTAATGTTAATCCTAGGGTCCGTACAATAGTGGGGTTCCAAAGTATTATTCTAATATGAAGAAATG
droKik1 scf7180000301710:253210-253259 + CGC---------------------------------------------------------------------------------------------------CACCATTCCGTTTGCTTCATTTCTTTTTGGCTGCTCTTTTGTTTACG------------------------------------------------------------------------------------------------------
droSim2 node_50966:2869-2901 - CCT---GGTAAAATCCACTGATAAAAGCGCTTCCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CATTACGATCAAATCCAACGATGAAAGCGCTTCCATGTGGTCGATGAGGGTGGCTGGAAACTTGTAAATATCAGTGTGTCAGAGTAGATAGGCGATATGCGCGAGTATTAGTTTTAGTTCCTTTCCTTCTAGCTGCTCATTTCTTTATGATAAACCAAACAAACCGAATCACACGAATTTAACTTTTAATGTTGATCCTAGGGTCAGTACAATAGTGTGGTTCCAAGGTATTATTCCAATATGAAGAAATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................CAGAGTAGATAGGCGATATGCG......................................................................................................................................................2261.0060000000600
................................................................................................................................................................................................................................AAGGTATTATTCCAATATGAAG.....2211.0010100000000
.........................................................AAACTTGTAAATATCAGTGTGTCAGAG.......................................................................................................................................................................2790.5650500000000
.........................................................AAACTTGTAAATATCAGTGTGTCAGA........................................................................................................................................................................2690.5650410000000
...................................................................................................................................................TGATAAACCAAACAAACCGAATCACAC.............................................................................2720.5010100000000
............................................................................TGTCAGAGTAGATAGGCGATATGC.......................................................................................................................................................2460.5030000000210
.........................................................AAACTTGTAAATATCAGTGTGTC...........................................................................................................................................................................2390.4440110101000
..........................................................................TGTGTCAGAGTAGATAGGCGATA..........................................................................................................................................................2350.4020000000020
....................................................................TATCAGTGTGTCAGAGTAGATAGGC..............................................................................................................................................................2570.2920000000020
..TTACGATCAAATCCAACGATGAAAGCG..............................................................................................................................................................................................................................2740.2510100000000
...............................................................................CAGAGTAGATAGGCGATATGCGC.....................................................................................................................................................2350.2010000000100
............................................................................TGTCAGAGTAGATAGGCGATATGCGC.....................................................................................................................................................2650.2010100000000
..............................TTCCATGTGGTCGATGAGGTA........................................................................................................................................................................................................2170.1410100000000
...........................CGCTTCCATGTGGTCGATGAGGG.........................................................................................................................................................................................................2370.1410100000000
.....................TGAAAGCGCTTCCATGTGGTCGAT..............................................................................................................................................................................................................2470.1410100000000
...........................CGCTTCCATGTGGTCGATGAGG..........................................................................................................................................................................................................2270.1410100000000
..............................TTCCATGTGGTCGATGAGGGT........................................................................................................................................................................................................2170.1410100000000
.....................TGAAAGCGCTTCCATGTGGTCG................................................................................................................................................................................................................2270.1410100000000
.....................TGAAAGCGCTTCCATGTGGTCGATG.............................................................................................................................................................................................................2570.1410100000000
......................................................................................................................................................................................................TAGGGTCAGTACAATAG....................................1780.1310000000100
......................................................................TCAGTGTGTCAGAGTAGATAGGCG.............................................................................................................................................................2480.1310100000000
...............................................................GTAAATATCAGTGTGTCAGAGTAG....................................................................................................................................................................2480.1310000000010
..........................................................................TGTGTCAGAGTAGATAGGC..............................................................................................................................................................1980.1310000000010
.......................................................................................................................................................................................................AGGGTCAGTACAATAGTG..................................1880.1310100000000
................AACGATGAAAGCGCTTCCATGT.....................................................................................................................................................................................................................2280.1310100000000
.............TCCAACGATGAAAGCGCTTCCATG......................................................................................................................................................................................................................2480.1310100000000
.....................TGAAAGCGCTTCCATGTGG...................................................................................................................................................................................................................1980.1310100000000
..........................................................AACTTGTAAATATCAGTGTGTCA..........................................................................................................................................................................2390.1110100000000
.........................................................AAACTTGTAAATATCAGTGTGTCAGAGT......................................................................................................................................................................2890.1110010000000
.........................................................AAACTTGTAAATATCAGTGTGTCAGAC.......................................................................................................................................................................2790.1110100000000
.........................................................AAACTTGTAAATATCAGTGTGTCA..........................................................................................................................................................................2490.1110100000000
..........................................................AACTTGTAAATATCAGTGTGTCAGAG.......................................................................................................................................................................2690.1110100000000
......................................................................TCAGTGTGTCAGAGTAGA...................................................................................................................................................................18100.1010000000100
droPer2
CATTACGATCAAATCCAACGATGAAAGCGCTTCCATGTGGTCGATGAGGGTGGCTGAAAACTTGTAAATATCAGTGTGTCAGAGTAGATAGGCGATACGCGCGAGTATTAGTTTTAGTTCCTTTCCTTCTAGCTGCACATTTCTTTATGATAAGCCAAACAAACCGAATCCCACGAATTTAACTTTTAATGTTAATCCTAGGGTCCGTACAATAGTGGGGTTCCAAAGTATTATTCTAATATGAAGAAATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................TATGATAAGCCAAACAAACCGAATCA................................................................................26200.102020000
...................................................................................................................................................................................TAACTTTTAATGTTAATCCTAGGG................................................24130.081010000
.....................................................................................................................................................................................ACTTTTAATGTTAATCCTAGGG................................................22160.061010000
............................................................................................................................................................................................................................TTCCAAAGTATTATTCTAATATGAAGA....27200.051010000
............................................................................................................................................................................................................................TTCCAAAGTATTATTCTAATATGA.......24200.051010000
..........................................................................TGTGTCAGAGTAGATAGGCGATA..........................................................................................................................................................23200.051010000
.............................................................................................................................................................................................................................TCCAAAGTATTATTCTAATAA.........21200.051010000
.....................................TGGTCGATGAGGGTGGCTGAAAACT.............................................................................................................................................................................................25200.051010000
....................................................................TATCAGTGTGTCAGAGTAGATA.................................................................................................................................................................22200.051010000
............................................TGAGGGTGGCTGAAAACTTGTAAAT......................................................................................................................................................................................25200.051010000
....................................................................................................................................................................................................................TAGTGGGGTTCCAAAGTATTATTC...............24200.051010000
................................................................TAAATATCAGTGTGTCAGAGTAGAA..................................................................................................................................................................25200.051010000
....................................................................................................................................................................................................................TAGTGGGGTTCCAAAGTATTATT................23200.051010000
.......................................................................................................................................................................................................................TGGGGTTCCAAAGTATTATTCTAATA..........26200.051010000
...............CAACGATGAAAGCGCTTCCA........................................................................................................................................................................................................................20200.051001000
........TCAAATCCAACGATGAAAGCGCTT...........................................................................................................................................................................................................................24200.051010000
..................................ATGTGGTCGATGAGGGTGG......................................................................................................................................................................................................19200.051010000
.............................................................................................................................................................................................................................TCCAAAGTATTATTCTAATATGA.......23200.051010000
droKik1
CGC---------------------------------------------------------------------------------------------------CACCATTCCGTTTGCTTCATTTCTTTTTGGCTGCTCTTTTGTTTACG------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSim2
CCT---GGTAAAATCCACTGATAAAAGCGCTTCCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads

Generated: 05/18/2015 at 04:47 AM