ID:

dps_2473

 Coordinate:

XL_group1a:2568274-2568495 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.9 -29.8 -29.5

Flybase annnotation

CDS [Dpse\GA22934-cds]; exon [dpse_GLEANR_11305:2]; CDS [Dpse\GA22934-cds]; exon [dpse_GLEANR_11305:1]; intron [Dpse\GA22934-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTGGATCACAGTCAGAGTCACAGTCAGAGCCAAAGTCAGGTGGCAAATGGTAAGCAGAAACAATCGTGAGCTTTGCGGTCCATAACATTGTCCAATACCGTTGCCAGATCGAACATCGGCGCGGCTGCTCAACGGCCACTGTAGCAGCCGCACCCGCACGGGAACAACTAGTGACGTAGCAACGGGTGGACTATCAGTAGCTATCCACACTGCCGACATGCACACACAGACCGATGATGAGCTGCCACTTTTGGACAGTGCCATGCCCCAGATAGCTCCTACAGCAACTGCAACTGCAACACCATCATCATCATCATCATC
*********************************************************************************************************....((((...))))..((((((((..((((...))))))))))))((((((((((...((.....))..))).))...)))))..........*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body		 M059
embryo
 SRR902012
CNS imaginal disc
 M022
male body		 GSM444067
head
 M062
head
..............................................................................................................................................................................................................................................................TACAGTGCCATGCCCAAGAC................................................ 20 3 16 11.56 185 181 0 4 0 0 0 0 0
..............................................................................................................................................................................................................................................................TACAGTGCCATGCCCAAGA................................................. 19 2 4 10.25 41 41 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ACAGTGCCATGCCCAAGAC................................................ 19 2 8 9.50 76 76 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ACAGTGCCATGCCCAAGA................................................. 18 1 2 4.00 8 8 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ACAGTGCCATGCCCAAGACCG.............................................. 21 3 5 4.00 20 19 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................CAGACCGTTGTTGAACTGCC........................................................................... 20 3 5 1.80 9 5 0 2 0 0 2 0 0
...............................................................................................................................................................................................................................................................ACAGTGCCATGCCCAAGTT................................................ 19 2 3 1.33 4 4 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................CAGTGCCATGCCCAAGACCGCT............................................ 22 3 3 1.33 4 4 0 0 0 0 0 0 0
.........................................................................................................CAGATCGAACATCGGCGCGGCTGC................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................TAGCAACGGGTGGACTATCAGT........................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................TGCTCAACGGCCACTGTAGCAGC............................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................ACAGCAACTGCAACTGCAACACCATC............... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACACATTGACCTATGATGAGCT.............................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................CCGCACCCGCACGGGAACAAC......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TACAGTGCCATGCCCAAGTT................................................ 20 3 11 0.45 5 5 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TACAGTGCCATGCCCAAG.................................................. 18 2 15 0.40 6 6 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TAACTCCTACCGCAACTGAAAC........................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TACAGTGCCATGCCCAAGACA............................................... 21 3 6 0.33 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CAGCCGGGTGATGAGCTGCCA.......................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0
.......CACAGTCAGAGTCACAGTCA....................................................................................................................................................................................................................................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ACAGTGCCATGCCCAAGT................................................. 18 2 12 0.25 3 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ACAGTGCCATGCCCAAGATTT.............................................. 21 3 5 0.20 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGTCCGACGATCAGCTGCCA.......................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACACACAGAGCTTTGATGAGCT.............................................................................. 22 3 6 0.17 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................CAGACCGTTGTTGAACTGC............................................................................ 19 3 20 0.15 3 3 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGCAACTGCAACTGCAACA.................... 19 0 9 0.11 1 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................................CAGTGCCATGCCCAAGTT................................................ 18 2 13 0.08 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

CGACCTAGTGTCAGTCTCAGTGTCAGTCTCGGTTTCAGTCCACCGTTTACCATTCGTCTTTGTTAGCACTCGAAACGCCAGGTATTGTAACAGGTTATGGCAACGGTCTAGCTTGTAGCCGCGCCGACGAGTTGCCGGTGACATCGTCGGCGTGGGCGTGCCCTTGTTGATCACTGCATCGTTGCCCACCTGATAGTCATCGATAGGTGTGACGGCTGTACGTGTGTGTCTGGCTACTACTCGACGGTGAAAACCTGTCACGGTACGGGGTCTATCGAGGATGTCGTTGACGTTGACGTTGTGGTAGTAGTAGTAGTAGTAG
***************************************************************************************************************************....((((...))))..((((((((..((((...))))))))))))((((((((((...((.....))..))).))...)))))..........********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM444067
head
 M040
female body
 V112
male body
...............................................................................................................................................................................................................................................................TGTCACGGTACGGGTTCTGGC.............................................. 21 3 5 2.20 11 0 10 1
..............................................................................................................................................................................................................................................................ATGTCACGGTACGGGTTCTG................................................ 20 3 16 1.69 27 0 25 2
...................................................................................................................................................................................................GTCGTCGATAGGTGTGACGGG.......................................................................................................... 21 2 1 1.00 1 1 0 0
.....................................................................................................................................................................................................CGTCGATAGGTGTGACGGC.......................................................................................................... 19 1 1 1.00 1 1 0 0
....................................................................................................................................................................................................TCGTCGATAGGTGTGACGGA.......................................................................................................... 20 2 1 1.00 1 1 0 0
...................................................................................................................................................................................................GTCATCGATTGGCGTGACGGA.......................................................................................................... 21 3 1 1.00 1 1 0 0
..............................................................................................................................................................................................................................................................ATGTCACGGTACGGGTTCT................................................. 19 2 4 1.00 4 0 4 0
...........................CTCGGTTTCAGTCTACCGTTT.................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0
.....................................................................................................................................................................................................CGTCGATACGTGTGACGGC.......................................................................................................... 19 2 2 0.50 1 1 0 0
...................................................................................................................................................................................................GTGGTCGATAGGTGTGACGGA.......................................................................................................... 21 3 2 0.50 1 1 0 0
...............................................................................................................................................................................................................................................................TGTCACGGTACGGGTTCTG................................................ 19 2 8 0.50 4 0 4 0
....................................................................................................................................................................................................TGATCGATTGGTGTGACGGC.......................................................................................................... 20 2 2 0.50 1 1 0 0
...............................................................................................................................................................................................................................................................TGTCACGGTACGGGTTCT................................................. 18 1 2 0.50 1 0 1 0
.....................................................................................................................................................................................................CGTCGATTGGTGTGACGGC.......................................................................................................... 19 2 3 0.33 1 0 0 1
....................................................................................................................................................................................................TCTTCGATTGGTGTGACGGA.......................................................................................................... 20 3 4 0.25 1 1 0 0
....................................................................................................................................................................................................TGATCGATAGTTGTCACGGC.......................................................................................................... 20 3 4 0.25 1 1 0 0
.....................................................................................................................................................................................................CATCGATTGGTGTGACGGT.......................................................................................................... 19 2 4 0.25 1 1 0 0
.....................................................................................................................................................................................................GGTCGATAGGTGTGACGGC.......................................................................................................... 19 2 5 0.20 1 1 0 0
....................................................................................................................................................................................................TGATCGATCGGTGTGACGGG.......................................................................................................... 20 3 5 0.20 1 1 0 0
....................................................................................................................................................................................................TGGCCGATAGGTGTGACGGC.......................................................................................................... 20 3 6 0.17 1 1 0 0
....................................................................................................................................................................................................TCGTCGATGGGTGTGATGGC.......................................................................................................... 20 3 7 0.14 1 1 0 0
....................................................................................................................................................................................................TTATCGATGGCTGTGACGGC.......................................................................................................... 20 3 8 0.13 1 1 0 0
....................................................................................................................................................................................................TGATCGATGGGGGTGACGGC.......................................................................................................... 20 3 8 0.13 1 1 0 0
....................................................................................................................................................................................................TGATGGATAGGTGTGACGGT.......................................................................................................... 20 3 9 0.11 1 1 0 0
...................................................................................................................................................................................................GTCGTCGATCGGTGTGACGGT.......................................................................................................... 21 3 19 0.11 2 2 0 0
...........................................................................................................CTAGCTTGGAGGCGTGCCG.................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 1
.....................................................................................................................................................................................................TATCGATTGGTGTGACGG........................................................................................................... 18 2 10 0.10 1 0 1 0
..............................................................................................................................................................................................................................................................ATGTCACGGTACGGGTTC.................................................. 18 2 15 0.07 1 0 1 0
.....................................................................................................................................................................................................CGTCGATTTGTGTGACGGC.......................................................................................................... 19 3 20 0.05 1 1 0 0
...............................................................................................................................................................................................................................................................TTTCACGGTTCGGGGTCGA................................................ 19 3 20 0.05 1 0 1 0
.........................................................................................................................CGCCGACGAGTTGCGTGTT...................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0
.............................................................................................................................................................................................................................................................................................................TGGTAGTAGTAGTAGTAGTA. 20 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:2568224-2568545 + dps_2473 GCT------------------GGATCACAGTCA---GAGTCACA--------GTCAGAGCCAAAGTCAGGTGGCAAATGGTA-AGCAGAAACAATCGTGAGCTTTGC-GGT--CCATAAC----A-------------------------------------TT-GT-----------------------------------------------------------CCA-AT----ACCGTTGC-----------CAGATCGAACA-------T------------------------CGG--------CGCGGCTGCTCAACGGCCACTGTAGCAGC----CGC---AC---------------------------------------------------------------------------------------------------------------------------------------------------CCGCAC-------GGGAACAACTAGTGAC-------GTAGCAA--CGGGTG---GACTATC---A---------------------------------------------------------GTAGCTATCCACACTGCCG--------ACATGCACA-------------CACAGACCGATGATGAGCTGC---C---ACTTTTGG------------ACAGTGCCATGCCCC---------AGATAG---CTC------CTACAGCAACTG------------------------------------------------------CAACTGCAAC---------ACCATCATCATCA---------------------------------------TCATCATC
droPer2 scaffold_28:1005259-1005586 + GCT------------------GGGTCACAGTCA---GAGTCACG--------GTCAGAGCCAAAGTCAGATGGCAAATGGTA-AGCAGAAACAATCGTGAGCTTTGC-GGT--CCATAAC----A-------------------------------------TT-GT-----------------------------------------------------------CCA-AT----ACCGTTGC-----------CAGATCGAACA-------T------------------------CGG--------CGCGGCTGCTCAACGGCCACTGTAGCAGC----CGC---AC---------------------------------------------------------------------------------------------------------------------------------------------------CCGCACCCGCA-CAGGAACAACTAGTGAC-------GTAGCAA--CGGGTG---GACTATC---A---------------------------------------------------------GTAGCTATCCACACTGCCG--------ACATGCACA-------------CACAGACCGATGATGAGCTGC---C---ACTTTTGG------------ACAGTGCCATGCCCC---------AGATAG---CTC------CTACAGCAACTG------------------------------------------------------CAACTGCAAC---------ACCATCATCATCA---------------------------------------TCATCATC
droWil2 scf2_1100000004909:7003889-7004201 - CAT------------------CAACAACATAC----AAA--------------------------TCCCGTGGCAAATGGTA-AGCAGAAACAATTGTGAACTTTGT-TATCAATATAAC----A-------------------------------------TT-GTCCATCAA--T------------------------------------------------------T----GTCGTCAC-A---------CAGCAAGGACA-CAGCCAA------------------------TCA--------TAAGGCTGCTTAATGGCAACTGTTGCCGCATAGTAG---CAACA------------------------------------TCAATAGCAGCAGCAACAGCAACAGCAGCAA----CCACAACAA-------------------------------------------------------------------------------CAA----------------------AAG----------------CA---A---------------------------------------------------------TCA----AAAGCACTGCCA--------CCATACACA-------------CACAGACGGATGAAGAGCTGCAAATGCAAATGTCAT------------------CAGTAG------------------------------TCAAATCATCCA------------------------------------------------------CAAATACATC---------AATATCATTATCA---------------------------------------TCATCTGC
droVir3 scaffold_13049:5423551-5423851 + GCC------------------GGGC---AGTCA---ACGACTTC--------GCCA---------------------------------------------------------------C----AGAATGCAAAGTCAGCAATAATTGCTAATCAAACAGCGCTCGTGGAAAC----------------------------------------------------------------------------------------GTACG----------------------------------G--------TGCCTTTTCCCA---GCAGCCGTCGCATC--ACCAA---CAGCA------------------------------------TCAACAACAACAGCAACAACAGCAGCAGCAG----CAACAACAA-------------------------------------------------------------------------------CAA----------------------CAG--CAATTG---GGCTGCCTGCT---------------------------------------------------------GCAGCCGTTGACTTTGGCA--------TTGTCCCCA-------------CAGCAACC---------------------------------------------------------------------------------------------GCAGCCGCTACAATTGCATAGCCAAATGATGCAGCAACAACAGCATCAACAGCAGCACCAGCAAC---------AACAACAACAGCA---------------------------------------GCAGCAGC
droMoj3 scaffold_6473:7467415-7467747 - GCC------------------GCAGTTCAGTCA---TCGTCGCGTCTCGCCGCTCAGCGCCGA--TCTGGATGCTGACGATTCAGCGA-------CGGATATTGTGC-CAA--CCACAGC----AGAGC-------------------------------------------------------------------------------------------------GCG-AT----GCCGA------TGCAACAA---C---AGCA-------ACAGCAGCAACA---A-------------------------C--AACAACAACAACAAC------------------------------------------------------------------------------------------AGCAAC----------------------------------------------------------------AGCAACC------GCAACAACAACAGCAACTACA-------TCAGCA--------ACCACATCGTC---GGCT---------ACGCCC------ACAACACCAACACGAGCACAAG--------------------------AACA--------AGAGCTAGATGTGCCTGTGTTGAAAAAAT-----------CG----------------------------AAAGTGCAACCG--GTT------CAGTTAAGCTCAA------CCACAACAACTG------------------------------------------------------CAGCAACAGC---------AACAGCAACAACT---------------------------------------GCAGCAAC
droGri2 scaffold_15110:13584388-13584667 - GCC------------------GGGC---AGTCA---ACGACTTC--------GCCA---------------------------------------------------------------C----AGAATGCAAAGTCAGCAATAATTGCTAATCAAACAGCACTCGTGGAGCC----------------------------------------------------------------------------------------GTACG----------------------------------G--------TGCCTTTTCCCAACAGCTATC---GCATC--ACCAG---CAGCA------------------------------------TCAACAGCAACAACAACAGCAGCAGCAGCAG----CAACAGCAG-------------------------------------------------------------------------------CAA----------------------CAA--CAGTTG---AGCTGCCTGCT---------------------------------------------------------GCAGCCGTTGACTT--------------------------------------------------------------------TGG------------------CATTGTCCCCA----------------------------CAGCAACCGCAGTCGCTACAATTGCAGAGCCAACTGATG---------------------CAACAACAGCAAC---------AACAGCATCAGCA---------------------------------------TCATCAGC
droAna3 scaffold_13337:10039274-10039574 + CTT------------------AGTC-ATTTCCA---A-----------------------------------------------------------------------------------------AGCGCTGA-----------------------------------------------------------------------------------------------------------------TCCAGCAG---C---GGTGAA------CAGTAGCAGTA-------------------------------------------------------------------------------GCAGT----------------------------------AATAGTAACAGTAGCAA-CAGCAACACCACTACCGCTGTCCAGGGCCACCAGCCCCCCGCCTCCCCCGTCACGCTGGCGCAACCGCGAC-----CCGAATCC-------GAAAGGCTAACCAACGAGTATGTGGACACGCCGCTG---------------CAACATGCGACGCGCTC------CCAACACCCGGCTGGCCAACAG--------------------------GATA--------ATGGCCAGA-------------CAACGACCCACCATCTATTGCTGTT---GCCGC-------------------------------------------------------------------------------------------------------------------------AACGCCAGCAAC---------ATCATCATCACCT---------------------------------------GCATCCAC
droBip1 scf7180000396569:1321581-1321876 - CCT------------------TAGTCATTTCCA---A-----------------------------------------------------------------------------------------AGCGCCGA-----------------------------------------------------------------------------------------------------------------CCCAGCAG---C---GGTGAT------CAGTAGCAGTA--------------------------------------------------------------------------------------------------------GC------------AATAGTAA---TAGCAA-CAGCAACACCACTACCGCTGTCCAGGGCCACCAGCCCCCCGCCTCCCCCGTCACGCTGGCGCAACCGCGAC-----CCGAGTCC-------GAAAGGCTAACCAACGAGTATGTGGACACGCCGCTG---------------CAACATGCGACGCGCTC------CCAACACCCGGCTGGCCAGCAG--------------------------GATA--------ATGGCCAGA-------------CAACGACCCACCATCTACTGCTGTT---GCCG-------------------------------------------------------------------------------------------------------------------------CAACGCCAGCAGC---------ACCACCATCACCT---------------------------------------GCATCCAC
droKik1 scf7180000302610:163227-163567 + TTT------------------GGGTCAAAATCA---TGG--------------------CCAAAATCTGTTGGCGAATGGTA-AGCAAAAAGAATTGTGAGCCCTGTTGTTAGAGATAACCACAG-------------------------------------TTCCTGTTCCTT--T------------------------------------------------GCC---------ATGCCAG-----------CAGCAAGGACAAC------CGGCAACAGTAGCAGCAACAGTAGCAGCAGCAAGCAACGCCTGCTTAATGGCAACTGTTGCAG--------------------------------------AACCAACAAGATCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAATGCC---AGCA---------ACATGAGCAACA---------------------------------TGA----GCAACATGGTCA--------ACATACAGA-------------CCCAAACTGA---TGAGCTGGAGTT---GCCACTGGCCTTAGCTTCACACACTGCCACAC------------------------------TCT---CAACGA------------------------------------------------------CATCTTCATC---------AACAACATCTGCA---------------------------------------TCAACATC
droFic1 scf7180000454072:3010287-3010677 + GCTTGGACGCAATCGCCAGCTGGGTCCGAATCC---GGG--------------------------TCAAGTGGCGAACGGTA-AGCAGAAAGAATTGTGAGCCTTGT-GTTTGCAATAAC----G-------------------------------------TTTGTGAACCCC--CCAACCACCCGACCACCACCCCACCCCC----TTCC------CTCCC---CTC-CC----AATGGTGCC----CAGCAGCAGCCAGGACG----------------------------------G--------TGCGTCTGCTCAACGGCAACTGTTGCGGC----CGC---TTGCAGGCGA----CAGCAGCAACAGAGATCGCCGGGGGCAGCAACAACAGCAGCAACAGCAACAACAGCAG----CAACAA-------------------------------------------------------------------------------------------------------------------------------C---A---------------------------------------------------------GCA----GCAACACGGTCA--------ACACACAGA-------------CACAGACCGACGAGGAGTTGCTGGC---AGTGCTAG------------CCAGAGCCATGCCCCCC---CAGCAAGG---------------------------------------------------------------------------------AGCTGCTTT---------GCCATCAGCCACA---------------------------------------TCATCACC
droEle1 scf7180000491001:1409357-1409694 + ACT------------------GGGCCTGAGTGA---GGG--------------------------TCAAGTGGCGAATGGTA-AGCAGAAAGAATTGTGAGCCTTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTCCCTCCAT--------------------TTCCCCC----TTCCAC----CTCTCCTCCCC-TA----AACGTTGC-----------TAGCCAGGTCA-------G------------------------CAG--------TGCGTCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCAA----CAGCAGCAACAGGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---G---------------------------------------------------------GCAGCT-ACAACACGGTAA--------ACATTCAAA-------------CGCAGACCGACGATGAGTTGCTGCC---GCTGCTAG------------------CCATGCCCCAAAAACAACAAGCAG---CTC------CCACAACAACAAC------------------AGCAACAT------------------------CAACAACAGCAGC---------AACATCAATATCA---------------------------------------TTATCAGC
droRho1 scf7180000777610:20889-21236 - ACT------------------GGGCCTGAGTCA---GGG--------------------------TCAAGTGGCGAATGGTA-AGCAGAAAGAATTGTGAGCCTTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTCC--------------------------ATCCCCC----TTCCCCCACCCACCCCTCCCC-AT----AACGTTGC-----------CAGCCAGGACA----------------------------------G--------TGCGTCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----TAGCAGCAACAGGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATTCAGA-------------CCCAGACCGACGATGAGTTGCTGCC---GCTGCAAG------------------CCATGCCCCCA---CAACAAGCAG---CTC------CCACAACAACAGCAACATCCACAACAGCAACAGCAACATCAA---------------------CAACAACAGCAGC---------AACATCTTTATCA---------------------------------------TTATCAGC
droBia1 scf7180000301760:4502014-4502348 + CTT-GGACGCAATCGCCAACTGGGCCCGAGTCA---TGG--------------------------CCAAGTGGCGAATGGTA-AGCAGAAAGAATTGTGAGCCCTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTCCCCC--T------------------------------------------------CCCACTCAATGAACGCTGC-----------CAGCAAGGACA----------------------------------G--------CGCGCCTGCTCAATGGCAACTGTTGCGGC----CGACTGTTGCAGGCGA----CAGCAGCAACAGGGGACAGTAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG----GCAACACGGTTA--------ACATGCAGA-------------CCCAAACCGGCGATGAGTTGCTGCC---GCTGCTAG------------------CCATGCCCCCG------CAAGCAG---CTC------CCGCTGCAACAGCAACAT---------CAACTG---------------------------------CAACTTCAAC---------AACAGCAGCAACA---------------------------------------TCATTATC
droTak1 scf7180000415211:43629-43915 - C-T------------------GGTCCCCAGTCAAGTGGG--------------------------CCAAGTGGCGAATGGTA-AGCAGAAAGACTTGTGAGCCCTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTACCCC--T------------------------------------------------------T----G-TGTTACCCTCGCAACAA---C---AGCA-------A------------------------CAG--------CGCGTCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGACCGGCAGCAGCAACAGCAGC-------AG---------------------------CAAC-----------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------ACA----GCAACACGGTCA--------ACATGGAAA-------------CCCAGACCGACGAGGAGTTGCTGCCACAGCTGCTAG------------------CCATGCCCCCA------CAAG------------------------------------------------------------------------------------CAGCAAC---------ATTATCATTATCG---------------------------------------CCATCAAA
droEug1 scf7180000409182:440801-441160 + CTC-GGACGCAATCGCCAACTAGGCCTGAGCCA---GGG--------------------------TCAAGTGGCGAATGGTA-AGCAGAAAGAATTGTGAGCCTTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTAACCT-----------------------------------------------------CC-TT----AACGTTGC-----------CAGCCAGGACA----------------------------------G--------CGCGTCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----CAGCAGCAACAGGGGCTACCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CAATACTTCC---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATACAGA-------------CCCAGACCGATGATGAGTTACTGCC---GCTGTTAG------------------CCATGGCCCCA------CAAGCAA---CTC------CCACAACAACAGCAACAG---------CAACAGCAACAGCGA---------------------CAACAACAGCAGC---------AGCATCATTATCATTAGCAGCC------------------------------ACATCATC
dm3 chrX:1897554-1897912 + ACT------------------GGGCCTGAGTCA---GGG--------------------------TCAAGTGGTGAATGGTA-AGCAGAAAGAATTGTGAGCCTTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTACCCC--T--------------------------------------------------CG-TT----AACGCTGC-----------CAGTCAGGACA----------------------------------G--------CACGCCTGCTCAATGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----CAGCAGGAACAGGGGCCAGCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACTGCC---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATGCAGA-------------CCCAGACCGACGATGAGTTGCTGCC---GCTGTTAG------------------CCATGCTCCCA------CAAGACG---CTC------CCACAACAACAGGAGCAG------------------------------------------------------CAGCAGGAGCAGCAGTATCATTATCATTATTAGCCACAGCCACAGCCACAACCACATCTTCATCATCATCATC
droSim2 2l:225928-226228 - TGG------------------AGACAACACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGACGCAGCAG---C---AACA-------GCAAACGTCA---CAA------------------------------CAACAGCAGCAAC-----------------CGCAGGCGA----CTTTAACATCG--------------------------------------------CCGC-ACCACC----------------------------------------------------------------AGCAAAT------GCAGCATCAGTCTCCAATACA-------CCAGCA--------GCAACAGTCGC---CGCA---------CCACCA------GCAACATCTACCCAGCTATAATCAGTCGCAGCA-------GCAATTCGATCCATTTGCTAACATACTA---------------GGAGACAATCAACCAGCTGCATC------CCAA-----------CAGACAATGTCGCCC--GCT------CATGTAAGTTCGCCGGTACC-------CGCG------------------------------------------------------CAAATGCAAC---------AGCAGCAGCAGCA---------------------------------------ACATCA--
droSec2 scaffold_10:1683110-1683419 + ACT------------------GGGCCTGAGTCA---GGG--------------------------TCAAGTGGTGAATGGTA-AGCAGAAAGAATTGTGAGCCCTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTACCCC-----------------------------------------------------CC-TT----AACGCTGC-----------CAGTCAGGACA----------------------------------G--------CACGCCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----CAGCAGGAACAGGGGCCAGCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACTGCC---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATGCAGA-------------CCCAGACCGACGATGAGTTGCTGCC---GCTGTTAG------------------CCATGCTCCCA------CAAGACG---CTC------CCACAACAACAGG------------------------------------------------------AGCAGCAGC---------AGGAGCAGCAGTA---------------------------------------TCATTATC
droYak3 X:6429412-6429739 - GTG---------------------------------------------------------------------GGTCATGGTA-AGGAGAAAGAATTGTGAGCCCTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTACCCC--C--------------------------CCTCCTCCC------CTCCC---CCT-AT----AACGCTGC-----------CAGCGAGGACA-------G------------------------CAG--------CACGCCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----CAGCAGCAACAGGGGCCAGCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACTGCC---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATACAAA-------------CTCAGACCGACGATGAGTTGCTCCC---ACTGCTAG------------------CCATGCCCCCA------CAAGACG---CTC------CTACAGCAACAACAACAA------------------------------------------------------CAGCAGCAGCAGCAGTATCACTATCATTATCAGCCAC---------------------------ATCATCATC
droEre2 scaffold_4644:1868086-1868395 + ACT------------------GGGCCCGAGTCC---GGG--------------------------CCAAGTGGTGAATGGTA-AGCAGAAAGAATTGTGAGCCCTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTACCCT--C------------------------------------------------CCCC-CT----AACGCTGC-----------CAGCGAGGACA----------------------------------G--------CACGCCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----CAGCGGCAACAGGGGCCAGCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACTGCC---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACACACAGA-------------CCCAGACCGACGATGAGTTGCTGCC---GCTGCTGG------------------CCATGCTGCCA------CAGGACG---CTC------CCACAGCAGCAG---------------------------------------------------------CAGCAGC------AGCAGTTTCATT---A---------------------------------------TCATTATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GCT------------------GGATCACAGTCA---GAGTCACA--------GTCAGAGCCAAAGTCAGGTGGCAAATGGTA-AGCAGAAACAATCGTGAGCTTTGC-GGT--CCATAAC----A-------------------------------------TT-GT-----------------------------------------------------------CCA-AT----ACCGTTGC-----------CAGATCGAACA-------T------------------------CGG--------CGCGGCTGCTCAACGGCCACTGTAGCAGC----CGC---AC---------------------------------------------------------------------------------------------------------------------------------------------------CCGCAC-------GGGAACAACTAGTGAC-------GTAGCAA--CGGGTG---GACTATC---A---------------------------------------------------------GTAGCTATCCACACTGCCG--------ACATGCACA-------------CACAGACCGATGATGAGCTGC---C---ACTTTTGG------------ACAGTGCCATGCCCC---------AGATAG---CTC------CTACAGCAACTG------------------------------------------------------CAACTGCAAC---------ACCATCATCATCA---------------------------------------TCATCATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................CAGATCGAACA-------T------------------------CGG--------CGCGGCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAA--CGGGTG---GACTATC---A---------------------------------------------------------GT..........................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................TGCTCAACGGCCACTGTAGCAGC----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACTG------------------------------------------------------CAACTGCAAC---------ACCATC......................................................2611.0010000100000
.................................................................................................................................................................................................................................................................................................................................................C----CGC---AC---------------------------------------------------------------------------------------------------------------------------------------------------CCGCAC-------GGGAACAAC................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.........................CACAGTCA---GAGTCACA--------GTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTG------------------------------------------------------CAACTGCAAC---------A...........................................................1990.1110001000000
droPer2
GCT------------------GGGTCACAGTCA---GAGTCACG--------GTCAGAGCCAAAGTCAGATGGCAAATGGTA-AGCAGAAACAATCGTGAGCTTTGC-GGT--CCATAAC----A-------------------------------------TT-GT-----------------------------------------------------------CCA-AT----ACCGTTGC-----------CAGATCGAACA-------T------------------------CGG--------CGCGGCTGCTCAACGGCCACTGTAGCAGC----CGC---AC---------------------------------------------------------------------------------------------------------------------------------------------------CCGCACCCGCA-CAGGAACAACTAGTGAC-------GTAGCAA--CGGGTG---GACTATC---A---------------------------------------------------------GTAGCTATCCACACTGCCG--------ACATGCACA-------------CACAGACCGATGATGAGCTGC---C---ACTTTTGG------------ACAGTGCCATGCCCC---------AGATAG---CTC------CTACAGCAACTG------------------------------------------------------CAACTGCAAC---------ACCATCATCATCA---------------------------------------TCATCATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTG---GACTATC---A---------------------------------------------------------GTAGCTATC...................................................................................................................................................................................................................................................................................2114.004400000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTAGTGAC-------GTAGCAA--CGGGT....................................................................................................................................................................................................................................................................................................................................................................2312.002200000
droWil2
CAT------------------CAACAACATAC----AAA--------------------------TCCCGTGGCAAATGGTA-AGCAGAAACAATTGTGAACTTTGT-TATCAATATAAC----A-------------------------------------TT-GTCCATCAA--T------------------------------------------------------T----GTCGTCAC-A---------CAGCAAGGACA-CAGCCAA------------------------TCA--------TAAGGCTGCTTAATGGCAACTGTTGCCGCATAGTAG---CAACA------------------------------------TCAATAGCAGCAGCAACAGCAACAGCAGCAA----CCACAACAA-------------------------------------------------------------------------------CAA----------------------AAG----------------CA---A---------------------------------------------------------TCA----AAAGCACTGCCA--------CCATACACA-------------CACAGACGGATGAAGAGCTGCAAATGCAAATGTCAT------------------CAGTAG------------------------------TCAAATCATCCA------------------------------------------------------CAAATACATC---------AATATCATTATCA---------------------------------------TCATCTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA--------CCATACACA-------------CACAGACGGATGAAG............................................................................................................................................................................................................................2711.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGCAAATGTCAT------------------CAGTA................................................................................................................................................................................2211.00100010
...................................................................................AGCAGAAACAATTGTGAACTTTGT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------CCATACACA-------------CACAGACGGAT................................................................................................................................................................................................................................2211.00100010
.......................................................................................................................................................................................................................................T----GTCGTCAC-A---------CAGCAAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATACACA-------------CACAGACGGATG...............................................................................................................................................................................................................................2111.00110000
.........................................................................CAAATGGTA-AGCAGAAACAATTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACA-------------CACAGACGGAT................................................................................................................................................................................................................................1820.50100010
............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA----CCACAACAA-------------------------------------------------------------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................................19110.09100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA----CCACAACAA-------------------------------------------------------------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................................18130.08100010
droVir3
GCC------------------GGGC---AGTCA---ACGACTTC--------GCCA---------------------------------------------------------------C----AGAATGCAAAGTCAGCAATAATTGCTAATCAAACAGCGCTCGTGGAAAC----------------------------------------------------------------------------------------GTACG----------------------------------G--------TGCCTTTTCCCA---GCAGCCGTCGCATC--ACCAA---CAGCA------------------------------------TCAACAACAACAGCAACAACAGCAGCAGCAG----CAACAACAA-------------------------------------------------------------------------------CAA----------------------CAG--CAATTG---GGCTGCCTGCT---------------------------------------------------------GCAGCCGTTGACTTTGGCA--------TTGTCCCCA-------------CAGCAACC---------------------------------------------------------------------------------------------GCAGCCGCTACAATTGCATAGCCAAATGATGCAGCAACAACAGCATCAACAGCAGCACCAGCAAC---------AACAACAACAGCA---------------------------------------GCAGCAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................ACG----------------------------------G--------TGCCTTTTCCCA---GCAGCCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA-------------CAGCAACC---------------------------------------------------------------------------------------------GCAGCCGCTA............................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................TAATCAAACAGCGCTCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTACAATTGCATAGCCAAATGAT........................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
........................................CTTC--------GCCA---------------------------------------------------------------C----AGAATGCAAAGTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TCGCATC--ACCAA---CAGCA------------------------------------TCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CGTCGCATC--ACCAA---CAGCA------------------------------------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGATGCAGCAACAACAG...........................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GCCGTCGCATC--ACCAA---CAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCAAATGATGCAGCAACAACAGCAT........................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAAC---------AACAACAACAGCA---------------------------------------GC......2480.252002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAAC---------AACAACAACAGCA---------------------------------------GCAGCA..2850.201001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCAACAACAACAGCAACAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.171001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------AACAACAACAGCA---------------------------------------GCAGC...22200.153002000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAACAACAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000010001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAG----CAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000020000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAG----CAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------AACAACAACAGCA---------------------------------------GCAGC...21200.102000000000000000002000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCACCAGCAAC---------AACAAC......................................................21150.071000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAGCAGCAGCAG----CAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27150.071001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCATCAACAGCAGCA.............................................................................19160.061000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAGCAGCAGCAG----CAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.061001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAG----CAACAACAA-------------------------------------------------------------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------AACAACAACAGCA---------------------------------------GCAGCAGC22200.051000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAG----CAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAACAACAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................A------------------------------------TCAACAACAACAGCAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------AACAACAACAGCA---------------------------------------GCA.....19200.051000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG----CAACAACAA-------------------------------------------------------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAG----CAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAG----CAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC---------AACAACAACAGCA---------------------------------------GC......21200.051000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAG----CAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAACAACAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAGCAGCAG----CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG----CAACAACAA-------------------------------------------------------------------------------CAA----------------------C.............................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000100000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAG----CAACAACAA-------------------------------------------------------------------------------CAA----------------------C.............................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------AACAACAACAGCA---------------------------------------GCAGCA..21200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------AACAACAACAGCA---------------------------------------GCAGCAGC23200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAG----CAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG----CAACAACAA-------------------------------------------------------------------------------CAA----------------------CAG--CA.......................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAG----CAACAACAA-------------------------------------------------------------------------------CAA----------------------CAG--CA.......................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------AACAACAACAGCA---------------------------------------GCAG....21200.051000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAACAACAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAG----CAACAACAA-------------------------------------------------------------------------------CAA----------------------C.............................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG----CAACAACAA-------------------------------------------------------------------------------CAA----------------------..............................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
GCC------------------GCAGTTCAGTCA---TCGTCGCGTCTCGCCGCTCAGCGCCGA--TCTGGATGCTGACGATTCAGCGA-------CGGATATTGTGC-CAA--CCACAGC----AGAGC-------------------------------------------------------------------------------------------------GCG-AT----GCCGA------TGCAACAA---C---AGCA-------ACAGCAGCAACA---A-------------------------C--AACAACAACAACAAC------------------------------------------------------------------------------------------AGCAAC----------------------------------------------------------------AGCAACC------GCAACAACAACAGCAACTACA-------TCAGCA--------ACCACATCGTC---GGCT---------ACGCCC------ACAACACCAACACGAGCACAAG--------------------------AACA--------AGAGCTAGATGTGCCTGTGTTGAAAAAAT-----------CG----------------------------AAAGTGCAACCG--GTT------CAGTTAAGCTCAA------CCACAACAACTG------------------------------------------------------CAGCAACAGC---------AACAGCAACAACT---------------------------------------GCAGCAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAACCG--GTT------CAGTTAAGCTC.........................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACAACTG------------------------------------------------------CAGCAACA.......................................................................1911.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG--------------------------AACA--------AGAGCTAGATGTG....................................................................................................................................................................................................................................................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAAAT-----------CG----------------------------AAAGTGCAACCG--.............................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---------AACAGCAACAACT---------------------------------------GCAGC...2460.171100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------AACAGCAACAACT---------------------------------------GCAGC...20140.071000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------------------------------------------CAGCAACAGC---------AACAGCAAC...................................................21200.051000010
droGri2
GCC------------------GGGC---AGTCA---ACGACTTC--------GCCA---------------------------------------------------------------C----AGAATGCAAAGTCAGCAATAATTGCTAATCAAACAGCACTCGTGGAGCC----------------------------------------------------------------------------------------GTACG----------------------------------G--------TGCCTTTTCCCAACAGCTATC---GCATC--ACCAG---CAGCA------------------------------------TCAACAGCAACAACAACAGCAGCAGCAGCAG----CAACAGCAG-------------------------------------------------------------------------------CAA----------------------CAA--CAGTTG---AGCTGCCTGCT---------------------------------------------------------GCAGCCGTTGACTT--------------------------------------------------------------------TGG------------------CATTGTCCCCA----------------------------CAGCAACCGCAGTCGCTACAATTGCAGAGCCAACTGATG---------------------CAACAACAGCAAC---------AACAGCATCAGCA---------------------------------------TCATCAGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................A------------------------------------TCAACAGCAACAACAACAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.10101
droAna3
CTT------------------AGTC-ATTTCCA---A-----------------------------------------------------------------------------------------AGCGCTGA-----------------------------------------------------------------------------------------------------------------TCCAGCAG---C---GGTGAA------CAGTAGCAGTA-------------------------------------------------------------------------------GCAGT----------------------------------AATAGTAACAGTAGCAA-CAGCAACACCACTACCGCTGTCCAGGGCCACCAGCCCCCCGCCTCCCCCGTCACGCTGGCGCAACCGCGAC-----CCGAATCC-------GAAAGGCTAACCAACGAGTATGTGGACACGCCGCTG---------------CAACATGCGACGCGCTC------CCAACACCCGGCTGGCCAACAG--------------------------GATA--------ATGGCCAGA-------------CAACGACCCACCATCTATTGCTGTT---GCCGC-------------------------------------------------------------------------------------------------------------------------AACGCCAGCAAC---------ATCATCATCACCT---------------------------------------GCATCCACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..T------------------AGTC-ATTTCCA---A-----------------------------------------------------------------------------------------AGCGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCGACGCGCTC------CCAACACCC....................................................................................................................................................................................................................................................................................................................2311.001010000
....................................................................................................................................GA-----------------------------------------------------------------------------------------------------------------TCCAGCAG---C---GGTGAA------CAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGGCCACCAGCCCCCCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.........................................................................................................................................................................................................................................................................GAA------CAGTAGCAGTA-------------------------------------------------------------------------------GCAGT----------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGACACGCCGCTG---------------CAACATGCGAC.........................................................................................................................................................................................................................................................................................................................................2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCGACGCGCTC------CCAACACCCGGCT................................................................................................................................................................................................................................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCTGGCCAACAG--------------------------GATA--------.................................................................................................................................................................................................................................................................2011.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGACACGCCGCTG---------------CAACATGCGA..........................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC-------GAAAGGCTAACCAACGAGC....................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGGCTGGCCAACAG--------------------------G............................................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................GTA-------------------------------------------------------------------------------GCAGT----------------------------------AATAGTAACAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-----CCGAATCC-------GAAAGGCTAAC............................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CAGCAACACCACTACCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG--------------------------GATA--------ATGGCCAGA-------------CAAC.......................................................................................................................................................................................................................................2311.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTC------CCAACACCCGGCT................................................................................................................................................................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC-------GAAAGGCTAACCAACG.......................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-----CCGAATCC-------GAAAGGCTAACCAAC........................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACCGCTGTCCAGGGCCACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droBip1
CCT------------------TAGTCATTTCCA---A-----------------------------------------------------------------------------------------AGCGCCGA-----------------------------------------------------------------------------------------------------------------CCCAGCAG---C---GGTGAT------CAGTAGCAGTA--------------------------------------------------------------------------------------------------------GC------------AATAGTAA---TAGCAA-CAGCAACACCACTACCGCTGTCCAGGGCCACCAGCCCCCCGCCTCCCCCGTCACGCTGGCGCAACCGCGAC-----CCGAGTCC-------GAAAGGCTAACCAACGAGTATGTGGACACGCCGCTG---------------CAACATGCGACGCGCTC------CCAACACCCGGCTGGCCAGCAG--------------------------GATA--------ATGGCCAGA-------------CAACGACCCACCATCTACTGCTGTT---GCCG-------------------------------------------------------------------------------------------------------------------------CAACGCCAGCAGC---------ACCACCATCACCT---------------------------------------GCATCCACSizeHit CountTotal NormTotal
No Reads
droKik1
TTT------------------GGGTCAAAATCA---TGG--------------------CCAAAATCTGTTGGCGAATGGTA-AGCAAAAAGAATTGTGAGCCCTGTTGTTAGAGATAACCACAG-------------------------------------TTCCTGTTCCTT--T------------------------------------------------GCC---------ATGCCAG-----------CAGCAAGGACAAC------CGGCAACAGTAGCAGCAACAGTAGCAGCAGCAAGCAACGCCTGCTTAATGGCAACTGTTGCAG--------------------------------------AACCAACAAGATCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAATGCC---AGCA---------ACATGAGCAACA---------------------------------TGA----GCAACATGGTCA--------ACATACAGA-------------CCCAAACTGA---TGAGCTGGAGTT---GCCACTGGCCTTAGCTTCACACACTGCCACAC------------------------------TCT---CAACGA------------------------------------------------------CATCTTCATC---------AACAACATCTGCA---------------------------------------TCAACATCSizeHit CountTotal NormTotal
No Reads
droFic1
GCTTGGACGCAATCGCCAGCTGGGTCCGAATCC---GGG--------------------------TCAAGTGGCGAACGGTA-AGCAGAAAGAATTGTGAGCCTTGT-GTTTGCAATAAC----G-------------------------------------TTTGTGAACCCC--CCAACCACCCGACCACCACCCCACCCCC----TTCC------CTCCC---CTC-CC----AATGGTGCC----CAGCAGCAGCCAGGACG----------------------------------G--------TGCGTCTGCTCAACGGCAACTGTTGCGGC----CGC---TTGCAGGCGA----CAGCAGCAACAGAGATCGCCGGGGGCAGCAACAACAGCAGCAACAGCAACAACAGCAG----CAACAA-------------------------------------------------------------------------------------------------------------------------------C---A---------------------------------------------------------GCA----GCAACACGGTCA--------ACACACAGA-------------CACAGACCGACGAGGAGTTGCTGGC---AGTGCTAG------------CCAGAGCCATGCCCCCC---CAGCAAGG---------------------------------------------------------------------------------AGCTGCTTT---------GCCATCAGCCACA---------------------------------------TCATCACCSizeHit CountTotal NormTotal
No Reads
droEle1
ACT------------------GGGCCTGAGTGA---GGG--------------------------TCAAGTGGCGAATGGTA-AGCAGAAAGAATTGTGAGCCTTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTCCCTCCAT--------------------TTCCCCC----TTCCAC----CTCTCCTCCCC-TA----AACGTTGC-----------TAGCCAGGTCA-------G------------------------CAG--------TGCGTCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCAA----CAGCAGCAACAGGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---G---------------------------------------------------------GCAGCT-ACAACACGGTAA--------ACATTCAAA-------------CGCAGACCGACGATGAGTTGCTGCC---GCTGCTAG------------------CCATGCCCCAAAAACAACAAGCAG---CTC------CCACAACAACAAC------------------AGCAACAT------------------------CAACAACAGCAGC---------AACATCAATATCA---------------------------------------TTATCAGCSizeHit CountTotal NormTotal
No Reads
droRho1
ACT------------------GGGCCTGAGTCA---GGG--------------------------TCAAGTGGCGAATGGTA-AGCAGAAAGAATTGTGAGCCTTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTCC--------------------------ATCCCCC----TTCCCCCACCCACCCCTCCCC-AT----AACGTTGC-----------CAGCCAGGACA----------------------------------G--------TGCGTCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----TAGCAGCAACAGGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATTCAGA-------------CCCAGACCGACGATGAGTTGCTGCC---GCTGCAAG------------------CCATGCCCCCA---CAACAAGCAG---CTC------CCACAACAACAGCAACATCCACAACAGCAACAGCAACATCAA---------------------CAACAACAGCAGC---------AACATCTTTATCA---------------------------------------TTATCAGCSizeHit CountTotal NormTotal
No Reads
droBia1
CTT-GGACGCAATCGCCAACTGGGCCCGAGTCA---TGG--------------------------CCAAGTGGCGAATGGTA-AGCAGAAAGAATTGTGAGCCCTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTCCCCC--T------------------------------------------------CCCACTCAATGAACGCTGC-----------CAGCAAGGACA----------------------------------G--------CGCGCCTGCTCAATGGCAACTGTTGCGGC----CGACTGTTGCAGGCGA----CAGCAGCAACAGGGGACAGTAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG----GCAACACGGTTA--------ACATGCAGA-------------CCCAAACCGGCGATGAGTTGCTGCC---GCTGCTAG------------------CCATGCCCCCG------CAAGCAG---CTC------CCGCTGCAACAGCAACAT---------CAACTG---------------------------------CAACTTCAAC---------AACAGCAGCAACA---------------------------------------TCATTATCSizeHit CountTotal NormTotal
No Reads
droTak1
C-T------------------GGTCCCCAGTCAAGTGGG--------------------------CCAAGTGGCGAATGGTA-AGCAGAAAGACTTGTGAGCCCTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTACCCC--T------------------------------------------------------T----G-TGTTACCCTCGCAACAA---C---AGCA-------A------------------------CAG--------CGCGTCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGACCGGCAGCAGCAACAGCAGC-------AG---------------------------CAAC-----------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------ACA----GCAACACGGTCA--------ACATGGAAA-------------CCCAGACCGACGAGGAGTTGCTGCCACAGCTGCTAG------------------CCATGCCCCCA------CAAG------------------------------------------------------------------------------------CAGCAAC---------ATTATCATTATCG---------------------------------------CCATCAAASizeHit CountTotal NormTotal
No Reads
droEug1
CTC-GGACGCAATCGCCAACTAGGCCTGAGCCA---GGG--------------------------TCAAGTGGCGAATGGTA-AGCAGAAAGAATTGTGAGCCTTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTAACCT-----------------------------------------------------CC-TT----AACGTTGC-----------CAGCCAGGACA----------------------------------G--------CGCGTCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----CAGCAGCAACAGGGGCTACCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CAATACTTCC---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATACAGA-------------CCCAGACCGATGATGAGTTACTGCC---GCTGTTAG------------------CCATGGCCCCA------CAAGCAA---CTC------CCACAACAACAGCAACAG---------CAACAGCAACAGCGA---------------------CAACAACAGCAGC---------AGCATCATTATCATTAGCAGCC------------------------------ACATCATCSizeHit CountTotal NormTotal
No Reads
dm3
ACT------------------GGGCCTGAGTCA---GGG--------------------------TCAAGTGGTGAATGGTA-AGCAGAAAGAATTGTGAGCCTTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTACCCC--T--------------------------------------------------CG-TT----AACGCTGC-----------CAGTCAGGACA----------------------------------G--------CACGCCTGCTCAATGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----CAGCAGGAACAGGGGCCAGCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACTGCC---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATGCAGA-------------CCCAGACCGACGATGAGTTGCTGCC---GCTGTTAG------------------CCATGCTCCCA------CAAGACG---CTC------CCACAACAACAGGAGCAG------------------------------------------------------CAGCAGGAGCAGCAGTATCATTATCATTATTAGCCACAGCCACAGCCACAACCACATCTTCATCATCATCATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................A----CAGCAGGAACAGGGGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................A---GGG--------------------------TCAAGTGGTGAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTAGCCACAGCCACAGCC..........................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TGCTCAATGGCAACTGTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................TTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG---CTC------CCACAACAACAGG....................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GGAACAGGGGCCAGCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CAACTGTTGCGGC----CGA---TTGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAG------------------------------------------------------CAGCAGGAGCAGCAGTAT.......................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TGGCAACTGTTGCGGC----CGA---TTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------ACATGCAGA-------------CCCAGACC...................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AATTGTGAGCCTTGT-GTTTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------CCACAACAACAGGAGCAG------------------------------------------------------CAGCA....................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GGCAACTGTTGCGGC----CGA---TTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GTCA---GGG--------------------------TCAAGTGGTGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------CCACAACAACAGGAGCAG------------------------------------------------------.........................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCGACGATGAGTTGCT.....................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CA---GGG--------------------------TCAAGTGGTGAATGGTA-AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGTTGCTGCC---GCTGTTAG------------------CCAT.................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------CCATGCTCCCA------CAAGACG---CT........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TGTGAGCCTTGT-GTTTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................GAATGGTA-AGCAGAAAGAATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AGGAACAGGGGCCAGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAG------------------CCATGCTCCCA------CAA.................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----GCAACACGGTCA--------ACATGCAGA-------------...........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CAAGTGGTGAATGGTA-AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GGCCTGAGTCA---GGG--------------------------TCAAGTGGTGAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATGCAGA-------------CCCAGACCG..................................................................................................................................................................................................................................3411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGGAGCAG------------------------------------------------------CAGCAGG..................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGGAGCAG------------------------------------------------------CA.......................................................................1880.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCACAGCCACAACCAC..................1920.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGGAGCAG------------------------------------------------------CAG......................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACTGCC---G---------------------------------------------------------GCA----GCAAGCA..............................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGCAG------------------------------------------------------CAGCAGGA.................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGCAG------------------------------------------------------CAGCAGGAGG...............................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
droSim2
TGG------------------AGACAACACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGACGCAGCAG---C---AACA-------GCAAACGTCA---CAA------------------------------CAACAGCAGCAAC-----------------CGCAGGCGA----CTTTAACATCG--------------------------------------------CCGC-ACCACC----------------------------------------------------------------AGCAAAT------GCAGCATCAGTCTCCAATACA-------CCAGCA--------GCAACAGTCGC---CGCA---------CCACCA------GCAACATCTACCCAGCTATAATCAGTCGCAGCA-------GCAATTCGATCCATTTGCTAACATACTA---------------GGAGACAATCAACCAGCTGCATC------CCAA-----------CAGACAATGTCGCCC--GCT------CATGTAAGTTCGCCGGTACC-------CGCG------------------------------------------------------CAAATGCAAC---------AGCAGCAGCAGCA---------------------------------------ACATCA--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................AA------------------------------CAACAGCAGCAAC-----------------CGCAGGCGA----CT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
................................................................................................................................................................................................................................................................................................A------------------------------CAACAGCAGCAAC-----------------CGCAGGCGA----CTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
......................................................................................................................................................................................................................................................................AACA-------GCAAACGTCA---CAA------------------------------CAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGTTCGCCGGTACC-------CGCG------------------------------------------------------CAAA...........................................................................2611.00100000001000000000
.........................................................................................................................................................................................................................................................................A-------GCAAACGTCA---CAA------------------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTCGCAGCA-------GCAATTCGATCCATTTGC...................................................................................................................................................................................................................................................................3011.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................GA----CTTTAACATCG--------------------------------------------CCGC-AC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGTCGCAGCA-------G....................................................................................................................................................................................................................................................................................1540.25100000001000000000
droSec2
ACT------------------GGGCCTGAGTCA---GGG--------------------------TCAAGTGGTGAATGGTA-AGCAGAAAGAATTGTGAGCCCTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTACCCC-----------------------------------------------------CC-TT----AACGCTGC-----------CAGTCAGGACA----------------------------------G--------CACGCCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----CAGCAGGAACAGGGGCCAGCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACTGCC---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATGCAGA-------------CCCAGACCGACGATGAGTTGCTGCC---GCTGTTAG------------------CCATGCTCCCA------CAAGACG---CTC------CCACAACAACAGG------------------------------------------------------AGCAGCAGC---------AGGAGCAGCAGTA---------------------------------------TCATTATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTG---------------------------------------------------------------------GGTCATGGTA-AGGAGAAAGAATTGTGAGCCCTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTACCCC--C--------------------------CCTCCTCCC------CTCCC---CCT-AT----AACGCTGC-----------CAGCGAGGACA-------G------------------------CAG--------CACGCCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----CAGCAGCAACAGGGGCCAGCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACTGCC---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACATACAAA-------------CTCAGACCGACGATGAGTTGCTCCC---ACTGCTAG------------------CCATGCCCCCA------CAAGACG---CTC------CTACAGCAACAACAACAA------------------------------------------------------CAGCAGCAGCAGCAGTATCACTATCATTATCAGCCAC---------------------------ATCATCATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCA--------ACATACAAA-------------CTCAGAC....................................................................................................................................................................................................................................2111.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAA------------------------------------------------------CAGCAGCAGCAGC............................................................2690.11101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------CAAGACG---CTC------CTACAATC.........................................................................................................................................19110.09100010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAA------------------------------------------------------CAGCAGCA.................................................................19200.05100000010000
droEre2
ACT------------------GGGCCCGAGTCC---GGG--------------------------CCAAGTGGTGAATGGTA-AGCAGAAAGAATTGTGAGCCCTGT-GTTTGCGATAAC----G-------------------------------------TTTGTGTACCCT--C------------------------------------------------CCCC-CT----AACGCTGC-----------CAGCGAGGACA----------------------------------G--------CACGCCTGCTCAACGGCAACTGTTGCGGC----CGA---TTGCAGGCGA----CAGCGGCAACAGGGGCCAGCAGGGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACTGCC---G---------------------------------------------------------GCA----GCAACACGGTCA--------ACACACAGA-------------CCCAGACCGACGATGAGTTGCTGCC---GCTGCTGG------------------CCATGCTGCCA------CAGGACG---CTC------CCACAGCAGCAG---------------------------------------------------------CAGCAGC------AGCAGTTTCATT---A---------------------------------------TCATTATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................C---GGG--------------------------CCAAGTGGTGAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.......................................................................................................................................................................GTACCCT--C------------------------------------------------CCCC-CT----AACGCTGC-----------CAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.......................................................................................................................................................................................................................................T----AACGCTGC-----------CAGCGAGGACA----------------------------------G--------CACGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG---------------------------------------------------------CAGCAGC------AGCAGTT........................................................22200.0510001000

Generated: 05/18/2015 at 04:40 AM