dps_2442

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCACTGCCAGCTGATGGAGACTCGCTTGATAGGATCAAAACGGTAACCAGGTAAGAAAGAAAGCAGCCAGCACGCAGTAGGCAAAAAGCAGTGGAGGTCAAAAAATCATCACACAAAAACAAACAGCGCGTCCATGTGTGTATTTGTGCGTGTCGCGTGAGTTTGTTTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGTATACATAGAGAAGGAGGAGCAGCAGCAGCAGCAACAGCA ************************************************...................(((((((.((.(((....(((................(((((((((.((((((((.(((((..((((((........)))))).)))))..))))))))...)))))).))))))...))).))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343916 embryo	V112 male body	M062 head	M040 female body	SRR902012 CNS imaginal disc
....................................ACAACGGTAACAAGGTAAGA...................................................................................................................................................................................................	20	2	1	1.00	1	0	1	0	0	0
.......CAGCTGATGGAGACTCGCTTGA..............................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
...............................................................................GGCAAAACGCACTGGAGGAC........................................................................................................................................................	20	3	9	0.22	2	0	0	2	0	0
............................................AACGGGGTAAGAAAGAAAG............................................................................................................................................................................................	19	2	8	0.13	1	0	0	0	1	0
..........................TGGTAGGCTCAGAACGGT...............................................................................................................................................................................................................	18	3	20	0.10	2	0	0	0	0	2

Species	Coordinate	ID	Alignment
dp5	XL_group1a:1494203-1494453 -	dps_2442	GC--ACTGCCAGCTGATG---GAGA----------------------------------------------------------CTCGCT---------TGA--TAGGATCAA-----AACGGTAACCAGGTAAG------------------------------------------A-AAG---------------AAAGCAGCCAGC----------------ACGCAGTAGGCAAAAAGCAGTGGAGGTCAAAAAATCATCA-------------------------------------------------------------------------------------------------CACAAAAACAAACAGCGCGTCCA-TGTGT------------------------------------------GTATTTGTGCGTGTCGCGTGAGTTTGTTTG----CA-------------------------------TGTGTGT--G-T------GTGTGTG----TGT--G--------TGTG----------TGTGTGTG------------TGTGCCTGTAT---------------------AC--------------------ATAGAG-AAGGAGGAG-------------------C-AGCAGCAGCAGCAACAGCA
droPer2	scaffold_53:304246-304488 +		GC--ACTGCCAGCTGATG---GAGA----------------------------------------------------------CTCGCT---------TGA--TAGGATCAA-----AACGGTAACCAGGTAAG------------------------------------------A-AAG---------------AAAGCAGCCAGC----------------ACGCAGTAGGCAAAAAGCAGTGGAGGTCAAAAAATCATCA-------------------------------------------------------------------------------------------------CACAAAAACAAACAGCCCGTCCA-TGTGT------------------------------------------GTATTTGTGCGTGTCGCGTGAGTTTGTTTG----CA-------------------------------------T--GT---------GTGTG----TGT--G--------TGTG----------TGTGTGTG------------TGTGCCTGTAT---------------------AC--------------------ATAGAG-AAGGAGGAG-------------------C-AGCAGCAGCAGCAACAGCA
droWil2	scf2_1100000004590:2087426-2087703 +		AC--GCCGCCAGCTGATAAGGAAAT----------------------------------------------------------CTTGCTCAA------TGA--TAAGAGCAA-----AATTGTTACCAGGTAAGAATTCGAAGTAGAGGTGCCAGCCAGGTACAGGATGATGACAAA-GAG---------------GGGGCGACAAGGACAGGGCA--------------------------------AGGCTAAAATT---------------------CTT------------------------------------------------------------------------------TTAAACAACAAATGTCAAGTT-------------------------------------------TGTGTGTGT-------------------------------G-----TGCAAGTGTGTGTATATACATATAAGCGTGTGTGTGTGT---------GTGCG----TGT--G--------CGTG----------TGTGTGGG------------TGTGCATGTAT---------------------AC--------------------ATAGCG-CAAGTGAAA-------------------C-AACAGCAACAAAAAC--AT
droVir3	scaffold_12932:915637-915835 -		GC--AGCAGCAGCTGAGG---CAAA-------------------------------------------------------------------------AGC--TGAGCGCAA-----AACAGAAAACAGAAAAC------------------------------------------A-A----------------------------------AAAACGAAAACGAACA---------------------------------------------------GCAAA--GAAAAGCAAAGAACGTACGAC-----------------------------------GC---AGCC----GTCGC-------------AGCCAGCT--T-----CTCTGCTGTGTGC--------------------GT---G------------------------------------------------------------------------TGTGTGTGT---------GTGAG----AGT--G--------AGTG----------TGCGTGGG------------TGCGAG-------------------------------------------------CGAGG-CAGCAGCAG-------------------C-AATAGCAACAGCAACAACA
droMoj3	scaffold_6496:6819596-6819822 -		GA--TG------------------GGGA----GAT------GGGGGAGA--------------------------------------------------------------------AAGGGTGATGAGGAGAG------------------------------------------A-GGG---------------GGAGAGACTGAGACAGAGCCAAGT--------------------AGAATGACAGTCAAGAAACGAAGA---------CGAAGTCATTTT-------------------TG---------------------------------------------------------------------------------------TG-------------CTGAGTTGTGGCAGAGA---GTG----------------------------------------TGCCTGTG----------------------TGTGT--G-T------GTGTGT------GT--GTGT--G--TTTGTGTGTGAGTGTGTGTGTA------------TATA-------------------------------------------------------G-TTGAAGGCA-TGTTTCACACTTCAGAGCCTATCGGCGGCCGCAAAAATG
droGri2	scaffold_15203:7746172-7746403 +		GC--AGCCACAGTCAGCA---GCGT----------------------------------------------------------CTTCGT---------TGCAGCAAGTTCAA-----GTCAGTTGGCCAGTCAG------------------------------------------T-CAG---------------CCAGCGGGAA----------------------CGTGCGGAACGAGCAATGGACG----------AGTT-------------------------------------------------------------------------------------------------CACTAGCACTAATACCATGCGAA-TGTGT--GTG-------------TCGGTGT--------GT---GTG-------------------------TGTGTG----TGTCG-------------------------GTGTGTGTGT--G-TGT------GTGT------CG--G--------TGTG----------TGT------GTGTGTTTCGGT------GTGT---------------------GT--------------------CTAGGT-TTCCAGACG-------------------C-TGCTGCAATAGTAGCAATA
droAna3	scaffold_13266:5892955-5893164 +		AGGCAGCAGCAGCAG------C--------------------------------------------------------------------------------------------------AGTA-GCAGGCAAA------------------------------------------A-AGG---------------AGAAAAAACAAC----------------ACACA-----CAAAAATCAAAGACAGCAAAA-----------------------GAATTTT-------------------TGTT--------------------GTTAGGCCCAAAAGCCG---TGCG----GCGGCC---------------------------------------------------------------GGTGAGC-------------------------------GTG-----TGTTGGTG----------------------TGTGT--G-T------GTGTGT----------TTGTGAGTGCGTGCGAGT----GTGTGTGTG------------TGTGAGCATCT--------------------------------------------CAAAG-AAGGAGAAA-------------------A-AGAAAG--AAAAAAAAACG
droBip1	scf7180000396362:10803-10990 -		CC--GTC------------------GAA-----CA------AGGAGACAAGGAGAAG------------GAAAAGGACAG---CAAGGAG--AAGGGG------A---GCAG--CAAGGCGGTTGCCAGGTAAGCGGT-----------------------------------------------------------------------------------------------------------GGA--------------------------------------------------------------------------------GTGGAGCCGAG-----GGGCGGCGGTGCGTCGCCACAAAAACA-ACAGCTTGCATT-TGTG----------------------------------------------------------------------------------------------------------------TGTAT--G-T------GTG-------------------------------------------------------------------GGGCGCCAGTGTTGACA-------------------------------------GGTTA-------------------C-CGTTATGGCAGGGGCTGGA
droKik1	scf7180000302586:279859-280096 +		GC--CTGGCCAGCTGATG---GAGTCGA----GCA---------------------G------------TCGGCGGA------TAAGGAT--AAGG------------GCAA-----GGCGGTTGCCAGGTAAGCAAGAGAAGGAGACG--CTAGAAGGGGGTCAGGAGCAGATAAA-GGAGCGCCAGCAGGAGCGAGAGCG----------------------------------------------------------------------------------------------GGAACGGGAGCA-----------------------------------GC---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----TTCTG-------------CTCCTCT--------GT---CTC-------------------------TGGTTG----TGTAG-------------------------GTGTGCGTGT--G-TGT------GTGA-------------------------------------TTTT--TGTGTTTG--TGTG-----------------------------C----------------------------------------------------------------------------
droFic1	scf7180000453926:188994-189156 +		GC--AC------------------TGGA----GCA------GGCGGAGAAGGAGCAGGACAAGGAGAAGGAAAAGGA------TAAGGAG--AAGG------------GCAG--GGCGGCGGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----GCCTGTTTTAAGA--------------------GT---A------------------------------------------------------------------------TG-------TGT------GCCTTCTTGTGT--G--------TATG----------TCCCTGTG------------CGT-----------------------------------------------------------------------------------------------------------
droEle1	scf7180000491277:529251-529448 -		GA--C-----AGCTGATGATGCACTGGA----GCAGGAACAGGCTGAGAAGGAGCAG------------GAGAGGGACAAGGACAAGGAG--AAGG------------GCAG--GGCGGCGGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----GCCAGTTCTGTGA--------------------CG---GTG-------------------------------------------------------------------------------T------GTGTGTG----TGT--G--------TGTG----------TGTGT----GA--------------------GAGGGCCAGTGTTGACACTCA------------------------AGT---------------------------------------------GGAGGA
droRho1	scf7180000779980:70302-70495 -		GA--C-----AGCTGATGATGCACTGGA----GCAGGAACAGGCTGAGAAGGAGCAG------------GAGAGGGA------CAAGGAG--AAGG------------CCAG--GGCGGCGGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----GCCTGTTCTATGA--------------------GG---GTG----------------------------------------------------------------------TATGTGTGT---------AGGCT----CAT--G--------CAT--------------GT----GT--------------------GAGGGCCAGTGCAGACATTCA------------------------AGT---------------------------------------------GAAGGA
droBia1	scf7180000302428:1701515-1701741 +		AA--C-----AAATAACGA---------------------------------------------------------------------------------------AGGCAA-----CACAGCAGAGGGCGAAG---------------------------------------------------------------------CCAAT-C---GAAACGAAATCGAA---------------------------------------------------TAACTTT------------------------------------------------------------------------------CAAGTGCAAAAAGCGTGTGCC-TGTGTGTGTGTTTTGTGTTTGTGCCACTGT--------GG---GTG-------------------------TGAGTG----T-----------------------------------------G-CGAGTGCGTGCGTG----TGC--G--------AGTG----------TGCGTGTG------------TGTGATTGTGT---------------------GCTGAAAAACAGAACGTGCAACAAGAAGCAGGAAGAAGA---------------A--G-AACAGCAGCTGACAGGCCA
droTak1	scf7180000415157:330876-331115 -		AT--TA------------------AAGC----GCT------GGCAA----------------------------------------------------------------------------------AAAAAA------------------------------------------ACAAC---------------AAAAAAGCCAAC----------------GAACAGC----GAGAGGAAGCGGAGAACAAA--ATA--------------------GTT--AAAGCCAACGTC--AACCGCGCT-----------------------------------GC---CGAC----GTCGC-------------TGCCAG----C-----GTC---------------------------------------GCACTTGAAAACGTCGCAAAAGTTTGTAAACA-------CGCCA--------------------GTGTGTGTGC--G-TGT------GTGT----------TTTTG----CCGGTGTGCCAGTGTGCGTGTG------------CCTA----GAA--------AA-----------GA--------------------GTAAAG-AAGAAGAAG-------------------C-AGAAGCAGAAG--ACGACG
droEug1	scf7180000408193:253830-253991 -		GA--C-----AGCTGATGATGCACTGGA----TCAGGAACAGGCGGAGAAG------------------------GA------TAAGGAG--AAGG------------GCAG--GGCGGCAGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----GCCCCTTTTATGA--------------------GT---G------------------------------------------------------------------------TG-------T------GTGTGTT----CGT--C--------CGTG----------TGCTT----GA--------------------GAGCACCAGTGT---------------------------------------------------------------------------------------
dm3	chrX:20258087-20258278 -		GA--AG------------------GAAA----GCA------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC----------------ACACGGCAGCACAGGACCAGCACGGGAAGAACAACAACAGCACCAGCACAAAAATCACTTT------------------------------------------------------------------A----CACGCTCCAAATAC--GAAGCGTG----T-----ACGAAGTGTGTGT--------------------GT---G----------------------------------------------TGTG----------------------TGTGT--G-T--------GTGT------GTGTGTGT--G--TGTG----------TGT------GTGAG------CGTG--TGTGT---------------------C--------------------------A-GAGGCGTAG-------------------A-CGAAGGGGTAGCCCCACCA
droSim2	3r:4379525-4379766 +		GC--AGTAGCAGCAG------C--------------------------------------------------------------------------------------------------AATA-GCA----AC------------------------------------------ATAAA---------------CTGCACGCATGT----------G-----AAAAGGA----GTGCGAGTGTGTAGAAAAAA--TCA--------------------ATT--GAGAGAAAAATTGCATATTCGCTGTCGCGGTCGAAACGAAAATA--------------------------------AGTGAAAGAAAATAA---------TATAT------------------------------------------ATATTTATATATATAAAGTGCGTTCG---G----GG-------------------------------TGTG-------TGC------GTGC----------T------TTCGGGTGTGC----CTGTGTGTG------------TGTA------G---------------------GC--------------------AAGGAGTAAGAAGCAG-------------------C-AGCAGCGGCAGCAGTAGAA
droSec2	scaffold_8:3529186-3529351 +		GC--AC------------------TGGA----GCA------GGCGGAGAAGGAGCAG------------GAGAGGGA------CAAGGAG--AAGG------------GCAG--GGCGGCGGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA---AGCG----GTCGCCACAAAAACAAACAGCCTGTG--T-----GCCTCCTCTGCGA--------------------GG---ATG-------------------------TGCCTG----TG-------------------------------T-------------------GTGT----------CTGTGTCTGTATGTGCGT----GCGTGTGTG------------TGTG----------------------------------------------------------------------------------------------------------
droYak3	X:3435739-3435919 +		AG--GAT------------------CAAAACTGCA------AGCCAAAAGGATACAG------------G------------------------------A--TGCATGCAGATGCAGCCAGTAAACAGCAATC------------------------------------------A-A----------------------------------A--------------------------------------------------------------------------------------------------------------------------------------AGCGGCATATGCATATAA-AGTAGACACCCTGAAT---GTGA--ATG-------------CGGATT-----------AGTGTGT-------------------------GT------G-----TGTAAGTGTGT------------------GTGTGT--GT---------GTGTG----TGT--G--------TGTG----------TGT------ATGAGTCGTG----GTCTGTAT---------------------A--------------------------------------------------------------------------TAT
droEre2	scaffold_4690:17752759-17752945 +		GC--AC------------------TGGA----GCAGGAGCAGGCGGAGAAGGAGCAG------------GAGAGGGA------CAAGGAG--AAGG------------GCAG--GGCGGCGGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----GCCTCCTCTGCGA--------------------GG---ATG----------------------------------------TGCGCGTG----------------------TGTGT--G-T------GTGTGT----------CTGTGTCTCTGTGTGTGC----CCGTGTGCGTGT--------------------GGGCGCCAGT-----------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

GC--ACTGCCAGCTGATG---GAGA----------------------------------------------------------CTCGCT---------TGA--TAGGATCAA-----AACGGTAACCAGGTAAG------------------------------------------A-AAG---------------AAAGCAGCCAGC----------------ACGCAGTAGGCAAAAAGCAGTGGAGGTCAAAAAATCATCA-------------------------------------------------------------------------------------------------CACAAAAACAAACAGCGCGTCCA-TGTGT------------------------------------------GTATTTGTGCGTGTCGCGTGAGTTTGTTTG----CA-------------------------------TGTGTGT--G-T------GTGTGTG----TGT--G--------TGTG----------TGTGTGTG------------TGTGCCTGTAT---------------------AC--------------------ATAGAG-AAGGAGGAG-------------------C-AGCAGCAGCAGCAACAGCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........CAGCTGATG---GAGA----------------------------------------------------------CTCGCT---------TGA--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

GC--ACTGCCAGCTGATG---GAGA----------------------------------------------------------CTCGCT---------TGA--TAGGATCAA-----AACGGTAACCAGGTAAG------------------------------------------A-AAG---------------AAAGCAGCCAGC----------------ACGCAGTAGGCAAAAAGCAGTGGAGGTCAAAAAATCATCA-------------------------------------------------------------------------------------------------CACAAAAACAAACAGCCCGTCCA-TGTGT------------------------------------------GTATTTGTGCGTGTCGCGTGAGTTTGTTTG----CA-------------------------------------T--GT---------GTGTG----TGT--G--------TGTG----------TGTGTGTG------------TGTGCCTGTAT---------------------AC--------------------ATAGAG-AAGGAGGAG-------------------C-AGCAGCAGCAGCAACAGCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............TGATG---GAGA----------------------------------------------------------CTCGCT---------TGA--TAGGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCA	18	20	0.05	1	0	1	0	0	0	0

droWil2

AC--GCCGCCAGCTGATAAGGAAAT----------------------------------------------------------CTTGCTCAA------TGA--TAAGAGCAA-----AATTGTTACCAGGTAAGAATTCGAAGTAGAGGTGCCAGCCAGGTACAGGATGATGACAAA-GAG---------------GGGGCGACAAGGACAGGGCA--------------------------------AGGCTAAAATT---------------------CTT------------------------------------------------------------------------------TTAAACAACAAATGTCAAGTT-------------------------------------------TGTGTGTGT-------------------------------G-----TGCAAGTGTGTGTATATACATATAAGCGTGTGTGTGTGT---------GTGCG----TGT--G--------CGTG----------TGTGTGGG------------TGTGCATGTAT---------------------AC--------------------ATAGCG-CAAGTGAAA-------------------C-AACAGCAACAAAAAC--AT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGT---------GTGCG----TGT--G--------CGTG----------TGTG..............................................................................................................................	25	15	0.07	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT---------GTGCG----TGT--G--------CGTG----------T.................................................................................................................................	20	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGT---------GTGCG----TGT--G--------CGTG----------TGT...............................................................................................................................	24	20	0.05	1	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTGTGTGTGT---------GTGCG----TG............................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGT---------GTGCG----TGT--G--------CG..............................................................................................................................................	22	20	0.05	1	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGT---------GTGCG----TGT--.........................................................................................................................................................	20	20	0.05	1	0	1	0	0	0

droVir3

GC--AGCAGCAGCTGAGG---CAAA-------------------------------------------------------------------------AGC--TGAGCGCAA-----AACAGAAAACAGAAAAC------------------------------------------A-A----------------------------------AAAACGAAAACGAACA---------------------------------------------------GCAAA--GAAAAGCAAAGAACGTACGAC-----------------------------------GC---AGCC----GTCGC-------------AGCCAGCT--T-----CTCTGCTGTGTGC--------------------GT---G------------------------------------------------------------------------TGTGTGTGT---------GTGAG----AGT--G--------AGTG----------TGCGTGGG------------TGCGAG-------------------------------------------------CGAGG-CAGCAGCAG-------------------C-AATAGCAACAGCAACAACA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................CAAA-------------------------------------------------------------------------AGC--TGAGCGCAA-----AAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCAGCTGAGG---CAAA-------------------------------------------------------------------------AGC--TGAGCGCAA-----A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CAGAAAAC------------------------------------------A-A----------------------------------AAAACGAAAACGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCAGCTGAGG---CAAA-------------------------------------------------------------------------AGC--TGAGCGCAA-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TGAGG---CAAA-------------------------------------------------------------------------AGC--TGAGCGCAA-----AAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GAGCGCAA-----AACAGAAAACAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----AGT--G--------AGTG----------TGCGTGGG------------TGC...........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--G--------AGTG----------TGCGTGGG------------TGCGA.........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGG------------TGCGAG-------------------------------------------------CGAGG-CAGC.............................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------TGCGTGGG------------TGCGAG-------------------------------------------------CGAGG-CAGC.............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------TGCGTGGG------------TGCGAG-------------------------------------------------CGAGG-C................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............GAGG---CAAA-------------------------------------------------------------------------AGC--TGAGCGCAA-----AACAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--G--------AGTG----------TGCGTGGG------------TGCGAG-------------------------------------------------CG.....................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TGCGAG-------------------------------------------------CGAGG-CAGCAGC..........................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CAGCT--T-----CTCTGCTGTGTGC--------------------GT---G------------------------------------------------------------------------T........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................AACGTACGAC-----------------------------------GC---AGCC----GTCGC-------------A.......................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AACGAACA---------------------------------------------------GCAAA--GAAAAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CGAACA---------------------------------------------------GCAAA--GAAAAGCAAAGAACG................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GC--AGCAGCAGCTGAGG---CAAA-------------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GAACGTACGAC-----------------------------------GC---AGCC----GT........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................A-A----------------------------------AAAACGAAAACGAACA---------------------------------------------------GCAAA--G..............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG----AGT--G--------AGTG----------TGCGTG............................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG-------------------C-AATAGCAACAGCAAC....	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGTGC--------------------GT---G------------------------------------------------------------------------TGTGTGTGT---------GTGAG----A.............................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................T---G------------------------------------------------------------------------TGTGTGTGT---------GTGAG----AGT--G--------A...............................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-------------------C-AATAGCAACAGCAACA...	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGT---------GTGAG----AGT--G--------AGTG----------C.................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GA--TG------------------GGGA----GAT------GGGGGAGA--------------------------------------------------------------------AAGGGTGATGAGGAGAG------------------------------------------A-GGG---------------GGAGAGACTGAGACAGAGCCAAGT--------------------AGAATGACAGTCAAGAAACGAAGA---------CGAAGTCATTTT-------------------TG---------------------------------------------------------------------------------------TG-------------CTGAGTTGTGGCAGAGA---GTG----------------------------------------TGCCTGTG----------------------TGTGT--G-T------GTGTGT------GT--GTGT--G--TTTGTGTGTGAGTGTGTGTGTA------------TATA-------------------------------------------------------G-TTGAAGGCA-TGTTTCACACTTCAGAGCCTATCGGCGGCCGCAAAAATG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTG----------------------------------------TGCCTGTG----------------------TGTGT--G-T------GTGT.....................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--G--TTTGTGTGTGAGTG..................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0

droGri2

GC--AGCCACAGTCAGCA---GCGT----------------------------------------------------------CTTCGT---------TGCAGCAAGTTCAA-----GTCAGTTGGCCAGTCAG------------------------------------------T-CAG---------------CCAGCGGGAA----------------------CGTGCGGAACGAGCAATGGACG----------AGTT-------------------------------------------------------------------------------------------------CACTAGCACTAATACCATGCGAA-TGTGT--GTG-------------TCGGTGT--------GT---GTG-------------------------TGTGTG----TGTCG-------------------------GTGTGTGTGT--G-TGT------GTGT------CG--G--------TGTG----------TGT------GTGTGTTTCGGT------GTGT---------------------GT--------------------CTAGGT-TTCCAGACG-------------------C-TGCTGCAATAGTAGCAATA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

AGGCAGCAGCAGCAG------C--------------------------------------------------------------------------------------------------AGTA-GCAGGCAAA------------------------------------------A-AGG---------------AGAAAAAACAAC----------------ACACA-----CAAAAATCAAAGACAGCAAAA-----------------------GAATTTT-------------------TGTT--------------------GTTAGGCCCAAAAGCCG---TGCG----GCGGCC---------------------------------------------------------------GGTGAGC-------------------------------GTG-----TGTTGGTG----------------------TGTGT--G-T------GTGTGT----------TTGTGAGTGCGTGCGAGT----GTGTGTGTG------------TGTGAGCATCT--------------------------------------------CAAAG-AAGGAGAAA-------------------A-AGAAAG--AAAAAAAAACG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT----------TTGTGAGTGCGTGC...........................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............G------C--------------------------------------------------------------------------------------------------AGTA-GCAGGCAAA------------------------------------------A-AGG---------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCGAGT----GTGTGTGTG------------TGTGAG........................................................................................................	25	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAA-------------------A-AGAAAG--AAAAA......	18	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA-------------------A-AGAAAG--AAAAAAA....	18	5	0.20	1	0	0	0	1	0	0
...CAGCAGCAGCAG------C--------------------------------------------------------------------------------------------------AGTA-GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	2	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------A-AGAAAG--AAAAAAAAAC.	19	7	0.14	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-----TGTTGGTG----------------------TGTGT--G-T------GTG......................................................................................................................................................................	21	19	0.05	1	0	0	0	0	0	1
...CAGCAGCAGCAG------C--------------------------------------------------------------------------------------------------AGTA-GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
..GCAGCAGCAGCAG------C--------------------------------------------------------------------------------------------------AGTA-GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..GCAGCAGCAGCAG------C--------------------------------------------------------------------------------------------------AGTA-GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

CC--GTC------------------GAA-----CA------AGGAGACAAGGAGAAG------------GAAAAGGACAG---CAAGGAG--AAGGGG------A---GCAG--CAAGGCGGTTGCCAGGTAAGCGGT-----------------------------------------------------------------------------------------------------------GGA--------------------------------------------------------------------------------GTGGAGCCGAG-----GGGCGGCGGTGCGTCGCCACAAAAACA-ACAGCTTGCATT-TGTG----------------------------------------------------------------------------------------------------------------TGTAT--G-T------GTG-------------------------------------------------------------------GGGCGCCAGTGTTGACA-------------------------------------GGTTA-------------------C-CGTTATGGCAGGGGCTGGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GC--CTGGCCAGCTGATG---GAGTCGA----GCA---------------------G------------TCGGCGGA------TAAGGAT--AAGG------------GCAA-----GGCGGTTGCCAGGTAAGCAAGAGAAGGAGACG--CTAGAAGGGGGTCAGGAGCAGATAAA-GGAGCGCCAGCAGGAGCGAGAGCG----------------------------------------------------------------------------------------------GGAACGGGAGCA-----------------------------------GC---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----TTCTG-------------CTCCTCT--------GT---CTC-------------------------TGGTTG----TGTAG-------------------------GTGTGCGTGT--G-TGT------GTGA-------------------------------------TTTT--TGTGTTTG--TGTG-----------------------------C----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GC--AC------------------TGGA----GCA------GGCGGAGAAGGAGCAGGACAAGGAGAAGGAAAAGGA------TAAGGAG--AAGG------------GCAG--GGCGGCGGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----GCCTGTTTTAAGA--------------------GT---A------------------------------------------------------------------------TG-------TGT------GCCTTCTTGTGT--G--------TATG----------TCCCTGTG------------CGT-----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GA--C-----AGCTGATGATGCACTGGA----GCAGGAACAGGCTGAGAAGGAGCAG------------GAGAGGGACAAGGACAAGGAG--AAGG------------GCAG--GGCGGCGGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----GCCAGTTCTGTGA--------------------CG---GTG-------------------------------------------------------------------------------T------GTGTGTG----TGT--G--------TGTG----------TGTGT----GA--------------------GAGGGCCAGTGTTGACACTCA------------------------AGT---------------------------------------------GGAGGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GA--C-----AGCTGATGATGCACTGGA----GCAGGAACAGGCTGAGAAGGAGCAG------------GAGAGGGA------CAAGGAG--AAGG------------CCAG--GGCGGCGGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----GCCTGTTCTATGA--------------------GG---GTG----------------------------------------------------------------------TATGTGTGT---------AGGCT----CAT--G--------CAT--------------GT----GT--------------------GAGGGCCAGTGCAGACATTCA------------------------AGT---------------------------------------------GAAGGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AA--C-----AAATAACGA---------------------------------------------------------------------------------------AGGCAA-----CACAGCAGAGGGCGAAG---------------------------------------------------------------------CCAAT-C---GAAACGAAATCGAA---------------------------------------------------TAACTTT------------------------------------------------------------------------------CAAGTGCAAAAAGCGTGTGCC-TGTGTGTGTGTTTTGTGTTTGTGCCACTGT--------GG---GTG-------------------------TGAGTG----T-----------------------------------------G-CGAGTGCGTGCGTG----TGC--G--------AGTG----------TGCGTGTG------------TGTGATTGTGT---------------------GCTGAAAAACAGAACGTGCAACAAGAAGCAGGAAGAAGA---------------A--G-AACAGCAGCTGACAGGCCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AT--TA------------------AAGC----GCT------GGCAA----------------------------------------------------------------------------------AAAAAA------------------------------------------ACAAC---------------AAAAAAGCCAAC----------------GAACAGC----GAGAGGAAGCGGAGAACAAA--ATA--------------------GTT--AAAGCCAACGTC--AACCGCGCT-----------------------------------GC---CGAC----GTCGC-------------TGCCAG----C-----GTC---------------------------------------GCACTTGAAAACGTCGCAAAAGTTTGTAAACA-------CGCCA--------------------GTGTGTGTGC--G-TGT------GTGT----------TTTTG----CCGGTGTGCCAGTGTGCGTGTG------------CCTA----GAA--------AA-----------GA--------------------GTAAAG-AAGAAGAAG-------------------C-AGAAGCAGAAG--ACGACG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GA--C-----AGCTGATGATGCACTGGA----TCAGGAACAGGCGGAGAAG------------------------GA------TAAGGAG--AAGG------------GCAG--GGCGGCAGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----GCCCCTTTTATGA--------------------GT---G------------------------------------------------------------------------TG-------T------GTGTGTT----CGT--C--------CGTG----------TGCTT----GA--------------------GAGCACCAGTGT---------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GA--AG------------------GAAA----GCA------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC----------------ACACGGCAGCACAGGACCAGCACGGGAAGAACAACAACAGCACCAGCACAAAAATCACTTT------------------------------------------------------------------A----CACGCTCCAAATAC--GAAGCGTG----T-----ACGAAGTGTGTGT--------------------GT---G----------------------------------------------TGTG----------------------TGTGT--G-T--------GTGT------GTGTGTGT--G--TGTG----------TGT------GTGAG------CGTG--TGTGT---------------------C--------------------------A-GAGGCGTAG-------------------A-CGAAGGGGTAGCCCCACCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTAG-------------------A-CGAAGGGGTAGC.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------GT---G----------------------------------------------TGTG----------------------TGTGT--G-T--------GTGT------GTGTG........................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--G-T--------GTGT------GTGTGTGT--G--TGTG----------T.................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------GTGT------GTGTGTGT--G--TGTG----------TGT------.........................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................T---G----------------------------------------------TGTG----------------------TGTGT--G-T--------GTGT------GTGTG........................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------GTGT------GTGTGTGT--G--TGTG----------TGT------GTGAG------C.............................................................................................................	27	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG----------------------TGTGT--G-T--------GTGT------GTGTGTGT--G--TGTG----------TGT------GTGA.....................................................................................................................	35	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT--G-T--------GTGT------GTGTGTGT--G--TGTG----------..................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GC--AGTAGCAGCAG------C--------------------------------------------------------------------------------------------------AATA-GCA----AC------------------------------------------ATAAA---------------CTGCACGCATGT----------G-----AAAAGGA----GTGCGAGTGTGTAGAAAAAA--TCA--------------------ATT--GAGAGAAAAATTGCATATTCGCTGTCGCGGTCGAAACGAAAATA--------------------------------AGTGAAAGAAAATAA---------TATAT------------------------------------------ATATTTATATATATAAAGTGCGTTCG---G----GG-------------------------------TGTG-------TGC------GTGC----------T------TTCGGGTGTGC----CTGTGTGTG------------TGTA------G---------------------GC--------------------AAGGAGTAAGAAGCAG-------------------C-AGCAGCGGCAGCAGTAGAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCG---G----GG-------------------------------TGTG-------TGC------GTG....................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAAAGTGCGTTCG---G----GG-------------------------------T..........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATATATAAAGTGCGTTCG---G----G...........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

GC--AC------------------TGGA----GCA------GGCGGAGAAGGAGCAG------------GAGAGGGA------CAAGGAG--AAGG------------GCAG--GGCGGCGGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA---AGCG----GTCGCCACAAAAACAAACAGCCTGTG--T-----GCCTCCTCTGCGA--------------------GG---ATG-------------------------TGCCTG----TG-------------------------------T-------------------GTGT----------CTGTGTCTGTATGTGCGT----GCGTGTGTG------------TGTG----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....AC------------------TGGA----GCA------GGCGGAGAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1

droYak3

AG--GAT------------------CAAAACTGCA------AGCCAAAAGGATACAG------------G------------------------------A--TGCATGCAGATGCAGCCAGTAAACAGCAATC------------------------------------------A-A----------------------------------A--------------------------------------------------------------------------------------------------------------------------------------AGCGGCATATGCATATAA-AGTAGACACCCTGAAT---GTGA--ATG-------------CGGATT-----------AGTGTGT-------------------------GT------G-----TGTAAGTGTGT------------------GTGTGT--GT---------GTGTG----TGT--G--------TGTG----------TGT------ATGAGTCGTG----GTCTGTAT---------------------A--------------------------------------------------------------------------TAT

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

GC--AC------------------TGGA----GCAGGAGCAGGCGGAGAAGGAGCAG------------GAGAGGGA------CAAGGAG--AAGG------------GCAG--GGCGGCGGTTGCCAGGTAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---AGCG----GTCGCCACAAAAACAAACAGCCTG----T-----GCCTCCTCTGCGA--------------------GG---ATG----------------------------------------TGCGCGTG----------------------TGTGT--G-T------GTGTGT----------CTGTGTCTCTGTGTGTGC----CCGTGTGCGTGT--------------------GGGCGCCAGT-----------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................GCCTG----T-----GCCTCCTCTGCGA--------------------GG---AT................................................................................................................................................................................................................................................................	23	1	11.00	11	0	0	0	0	0	0	11

dps_2442

XL_group1a:1494253-1494403 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads