ID:

dps_2423

 Coordinate:

XL_group1a:652988-653138 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.2 -29.0 -28.8

Flybase annnotation

exon [dpse_GLEANR_11205:3]; CDS [Dpse\GA22875-cds]; intron [Dpse\GA22875-in]

Repeatable elements

NameClassFamilyStrand
TRIMLINELOA+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCTGCTCCGTATACATGAGTCACGACCAACCTGACCCCCCTACACACGCTTCCCTCCGGGCGCTTATCGCAGACTGTGAGGCCAAGGACATCGGCCTAATTGTGGGGTGGGACGCCATCTTTGTCGTGTTCGCCCTGAGTCTCCACCTAAGAAGGAAATTCCCAGGAAGGCCACGACTCATCTTGTTACAATTTTCACAGACGCTCGCAGTGAGGCGCTCGGTAAATCCTGCCCTCCGGCAAAACAAAGG
********************************************************************(((((......(((((.........)))))..)))))((((((((((.((....)).))).)))))))...((((...(((..(((.....)))..))).))))******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 GSM343916
embryo
 SRR902012
CNS imaginal disc
 M059
embryo
....................................................................CGCAGACTGTGAGGCCAAGGAC................................................................................................................................................................. 22 0 1 4.00 4 1 3 0 0 0 0
.....................................................................GCAGACTGTGAGGCCAAGGA.................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
....................................................................CGCAGACTGTGAGGCCAAGGA.................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
.............................................CACGCTTCCCTCCGGGCGCTT......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................TAAGAAGGAAATTCCCAGGAAGGC............................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................CGCAGACTGTGAGGCCAAGGACAT............................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
....................................................................CACAGACTGTGAGGCCAAGGACATC.............................................................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
........................................................................................ACATCGGCCTAATTGTGGGG............................................................................................................................................... 20 0 20 0.70 14 2 5 7 0 0 0
......................................................................CAGACTGCGAGGCCAAGGACATCGGC........................................................................................................................................................... 26 1 17 0.65 11 3 3 5 0 0 0
....................................................................CACAGACTGTGAGGACAAGGACATCGG............................................................................................................................................................ 27 2 2 0.50 1 0 0 1 0 0 0
....................................................................................AAGGACATCGGCCTAATTGTGGG................................................................................................................................................ 23 0 16 0.50 8 2 4 2 0 0 0
..........................................................................CTATGATGCCAAGTACATCGGC........................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
.....................................................................................AGGACATCGGCCTAATTGTGG................................................................................................................................................. 21 0 16 0.44 7 3 3 1 0 0 0
......................................................................CAGACTGCGAGGCCAAGGACATCGG............................................................................................................................................................ 25 1 18 0.39 7 4 1 2 0 0 0
....................................................................................AAGGACATCGGCCTAATTGTGGGG............................................................................................................................................... 24 0 16 0.38 6 5 1 0 0 0 0
....................................................................................AAGGACATCGGCCTAATTGTG.................................................................................................................................................. 21 0 17 0.35 6 1 5 0 0 0 0
........................................................................................ACATCGGCCTAATTGTGGGGT.............................................................................................................................................. 21 0 20 0.35 7 6 1 0 0 0 0
......................................................................CAGACTGCGAGGCCAAGGACATC.............................................................................................................................................................. 23 1 18 0.33 6 0 4 2 0 0 0
..........................................................................................ATCGGCCTAATTGTGGGGTG............................................................................................................................................. 20 0 20 0.30 6 6 0 0 0 0 0
...........................................................................TGCGAGGCCAAGGACATCGG............................................................................................................................................................ 20 1 18 0.28 5 5 0 0 0 0 0
...........................................................................................TCGGCCTAATTGTGGGGTGGGAA......................................................................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0
.........................................................................................CATCGGCCTAATTGTGGGGTGGG........................................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0 0
.............................................TACGCTTCCCTCCGGGGCCT.......................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0
.........................................................................................CATCGGCCTAATTGTGGGG............................................................................................................................................... 19 0 20 0.20 4 0 2 2 0 0 0
.........................................................................................CATCGGCCTAATTGTGGGGT.............................................................................................................................................. 20 0 20 0.20 4 2 1 1 0 0 0
.............................................................................................GGCCTAATTGTGGGGTGGTA.......................................................................................................................................... 20 1 5 0.20 1 0 0 0 1 0 0
...........................................................................TGCGAGGCCAAGGACATCGGC........................................................................................................................................................... 21 1 17 0.18 3 1 1 0 0 0 1
...........................................................................................................GTAGGACGCCAGCTTTG............................................................................................................................... 17 2 7 0.14 1 0 0 0 0 1 0
..........TATTCAAGAGTAACGACCAA............................................................................................................................................................................................................................. 20 3 8 0.13 1 1 0 0 0 0 0
.....................................................................................AGGACATCGGCCTAATTGTGGGG............................................................................................................................................... 23 0 16 0.13 2 2 0 0 0 0 0
...........................................................................TATGATGCCAAGTACATCGGC........................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0
....................................................................................AAGGACATCGGCCTAATTGTGGGGT.............................................................................................................................................. 25 0 16 0.13 2 0 2 0 0 0 0
.......................................................................AGACTGCGAGGCCAAGGACATCGGC........................................................................................................................................................... 25 1 17 0.12 2 0 1 1 0 0 0
...................................................................................CAAGGACATCGGCCTAATTGT................................................................................................................................................... 21 0 18 0.11 2 2 0 0 0 0 0
................................................................................GGCCAAGGACATCGGCCTAAT...................................................................................................................................................... 21 0 18 0.11 2 2 0 0 0 0 0
......................................................................CAGACTGCGAGGCCAAGGACATCG............................................................................................................................................................. 24 1 18 0.11 2 0 1 1 0 0 0
.........................................................................................CATCGGCCTAATTGTGGGGTG............................................................................................................................................. 21 0 20 0.10 2 0 1 1 0 0 0
........................................................................................ACATCGGCCTAATTGTGGG................................................................................................................................................ 19 0 20 0.10 2 0 0 2 0 0 0
.........................................................................................CATCGGCCTAATCGTGGGGTG............................................................................................................................................. 21 1 20 0.10 2 2 0 0 0 0 0
.......................................................................................GACATCGGCCTAATTGTGGG................................................................................................................................................ 20 0 20 0.10 2 2 0 0 0 0 0
..........................................................................................ATCGGCCTAATTGTGGGGT.............................................................................................................................................. 19 0 20 0.10 2 1 0 1 0 0 0
.......................................................................................GACATCGGCCTAATTGTGG................................................................................................................................................. 19 0 20 0.10 2 0 0 2 0 0 0
................................................................................................CTAATTGTGGGGTGGGATGC....................................................................................................................................... 20 1 13 0.08 1 0 0 1 0 0 0
...................................................................TCACAGACTGTGAGGCCAAGG................................................................................................................................................................... 21 1 14 0.07 1 1 0 0 0 0 0
....................................................................................AAGGACATCGGCCTAATTGTGGGGTG............................................................................................................................................. 26 0 16 0.06 1 1 0 0 0 0 0
..................................................................................CCAAGGACATCGGCCTAATTGTGGGGT.............................................................................................................................................. 27 0 16 0.06 1 1 0 0 0 0 0
....................................................................................AAGGACATCGGCCTAATTGTGG................................................................................................................................................. 22 0 16 0.06 1 0 0 1 0 0 0
......................................................................................GGACATCGGCCTGATTGTGGG................................................................................................................................................ 21 1 17 0.06 1 0 1 0 0 0 0
......................................................................................GGACATCGGCCTAATTGTGGG................................................................................................................................................ 21 0 17 0.06 1 1 0 0 0 0 0
......................................................................CATACTGCGAGGCCAAGGACATCGGC........................................................................................................................................................... 26 2 17 0.06 1 0 0 1 0 0 0
..................................................................................CCAAGTACATCGGCCTAATTATGG................................................................................................................................................. 24 2 17 0.06 1 1 0 0 0 0 0
......................................................................................GGACATCGGCCTAATTGTGG................................................................................................................................................. 20 0 17 0.06 1 0 0 1 0 0 0
...................................................................................CAAGGACATCGGCCTAATTGTGGA................................................................................................................................................ 24 1 17 0.06 1 0 0 1 0 0 0
......................................................................CAGACTGCGAGGCCAAGGACATCGGCC.......................................................................................................................................................... 27 1 17 0.06 1 0 1 0 0 0 0
............................................................................GCGAGGCCAAGGACATCGGCC.......................................................................................................................................................... 21 1 18 0.06 1 1 0 0 0 0 0
............................................................................GCGAGGCCAAGGACATCGGC........................................................................................................................................................... 20 1 18 0.06 1 1 0 0 0 0 0
............................................................................ATGATGCCAAGTACATCGGC........................................................................................................................................................... 20 3 19 0.05 1 1 0 0 0 0 0
......................................................................CAGACTGCGAGGACAAGGACATCGGC........................................................................................................................................................... 26 2 19 0.05 1 0 0 1 0 0 0
........................................................................................ACATCGGCCTAATTGTGG................................................................................................................................................. 18 0 20 0.05 1 0 0 1 0 0 0
.........................................................................................CATCGGCCTAATTGTGGAA............................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
.........................................................................................CATCGGCCTGATTGTGGGGT.............................................................................................................................................. 20 1 20 0.05 1 1 0 0 0 0 0
.......................................................................................GACATCGGCCTAATTGTGGGG............................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................GTAAAAGCTGCCGTCCGGC.......... 19 3 20 0.05 1 1 0 0 0 0 0
.......................................................................................GACATCGGCCTAATTGTGGGGTT............................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0
..........................................................................................ATCGGCCTAATTGTGGGGTT............................................................................................................................................. 20 1 20 0.05 1 0 0 1 0 0 0
.......................................................................................GACATCGGCCTAATTGTGGGGT.............................................................................................................................................. 22 0 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

TAGACGAGGCATATGTACTCAGTGCTGGTTGGACTGGGGGGATGTGTGCGAAGGGAGGCCCGCGAATAGCGTCTGACACTCCGGTTCCTGTAGCCGGATTAACACCCCACCCTGCGGTAGAAACAGCACAAGCGGGACTCAGAGGTGGATTCTTCCTTTAAGGGTCCTTCCGGTGCTGAGTAGAACAATGTTAAAAGTGTCTGCGAGCGTCACTCCGCGAGCCATTTAGGACGGGAGGCCGTTTTGTTTCC
*******************************************************************************(((((......(((((.........)))))..)))))((((((((((.((....)).))).)))))))...((((...(((..(((.....)))..))).))))******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 SRR902010
ovaries
 V112
male body		 M059
embryo
 GSM343916
embryo
 M062
head
 GSM444067
head
.................................................................................................................GCGGTAGAAACAGCACAAGCGGGACT................................................................................................................ 26 0 1 3.00 3 0 0 3 0 0 0 0 0
..................................................................................................................CGGTAGAAACAGCACAAGCGGGACT................................................................................................................ 25 0 1 2.00 2 0 2 0 0 0 0 0 0
....CGAGGCATATGTACTCAGTGCTGGT.............................................................................................................................................................................................................................. 25 0 1 2.00 2 0 2 0 0 0 0 0 0
......................................................................................................................AGAAACAGCACAAGCGGGACTCAG............................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................GGCCCGCGAATAGCGTCTGACA............................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGTCACTCCGCGAGCCATTTAC...................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................CGGGACTCAGAGGTGGATTCTTCCTT............................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................CCTGCGGTAGAAACAGCACAAGCGG.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........CATAAGTTCTCATTGCTGGTT............................................................................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................TTAAGGGTCCTTCCGGTGCTGAGTA..................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTGCGAGCGTCACTCCGCGAGCCATT......................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................GTTCCTGTAGCCGGATTAACCACCT............................................................................................................................................... 25 3 18 0.61 11 11 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGATTAA..................................................................................................................................................... 21 0 17 0.59 10 8 0 2 0 0 0 0 0
...............................................................................TTCGGTTCCTGTAGCCGGATT....................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGATT....................................................................................................................................................... 19 0 18 0.50 9 8 0 0 0 0 0 1 0
..................................................................................GGTTCCTGTAGCCGGATTAACCACCT............................................................................................................................................... 26 3 18 0.44 8 8 0 0 0 0 0 0 0
...................................................................................GTTCCTGTAGCCGGATTAACA................................................................................................................................................... 21 0 18 0.39 7 7 0 0 0 0 0 0 0
................................................................................CCGGTTCCTGTAGCCGGATTA...................................................................................................................................................... 21 0 18 0.39 7 7 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGATTA...................................................................................................................................................... 20 0 18 0.39 7 7 0 0 0 0 0 0 0
.....................................GGGGATGTGAGGGAAGGGAG.................................................................................................................................................................................................. 20 2 3 0.33 1 1 0 0 0 0 0 0 0
....................................................................................TTCCTGTAGCCGGATTAACAC.................................................................................................................................................. 21 0 17 0.29 5 5 0 0 0 0 0 0 0
..................................................................................GGTTCCTGTAGCCGGATT....................................................................................................................................................... 18 0 20 0.25 5 5 0 0 0 0 0 0 0
...........................................................................................AGCCGGATTAACACCGTACCCTGCGGT..................................................................................................................................... 27 2 4 0.25 1 1 0 0 0 0 0 0 0
..................................................................................GGTTCCTGTAGCCGGATTAACAC.................................................................................................................................................. 23 0 17 0.24 4 3 1 0 0 0 0 0 0
.....................................................................................................................................................................CCTTTCGGTGCTGAGTAGAACAAT.............................................................. 24 1 9 0.22 2 0 0 0 1 0 1 0 0
.................................................................................CGGTTCCTGTAGCCGGATTAACACCC................................................................................................................................................ 26 0 15 0.20 3 2 0 1 0 0 0 0 0
..................................................................................GGTTCCTGTAGCCGGATTAAC.................................................................................................................................................... 21 0 19 0.16 3 3 0 0 0 0 0 0 0
..........................................................................................................................................................................CGGTGCTGAGTAGAACAA............................................................... 18 0 13 0.15 2 2 0 0 0 0 0 0 0
...................................................................................GTTCCTGTAGCCGGATTAACACCC................................................................................................................................................ 24 0 16 0.13 2 2 0 0 0 0 0 0 0
..................................................................................GGTTCCTGTAGCCGGATTAACACCC................................................................................................................................................ 25 0 16 0.13 2 2 0 0 0 0 0 0 0
..........ATAAGTTCTCATTGCTGGTT............................................................................................................................................................................................................................. 20 3 8 0.13 1 1 0 0 0 0 0 0 0
......................................................................................CCTGTAGCCGGATTAACACCCCAC............................................................................................................................................. 24 0 17 0.12 2 2 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGATTAACCACCT............................................................................................................................................... 27 3 17 0.12 2 2 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGATTAAC.................................................................................................................................................... 22 0 17 0.12 2 2 0 0 0 0 0 0 0
................................................................................ACGGTTCCTGTAGCCGGATT....................................................................................................................................................... 20 1 18 0.11 2 2 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGATTAACCAC................................................................................................................................................. 25 2 18 0.11 2 2 0 0 0 0 0 0 0
..................................................................................GGTTCCTGTAGCCGGATTAA..................................................................................................................................................... 20 0 19 0.11 2 2 0 0 0 0 0 0 0
...................................................................................GTTCCTGTAGCCGGATTAACCAC................................................................................................................................................. 23 2 19 0.11 2 2 0 0 0 0 0 0 0
................................................................................CCGGTTCCTGTAGCCGGATTG...................................................................................................................................................... 21 1 19 0.11 2 2 0 0 0 0 0 0 0
..................................................................................GGTTCCTGTAGCCGGATTA...................................................................................................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0 0
...........................................GTAGGCGAAGGGAGGGCCG............................................................................................................................................................................................. 19 3 20 0.10 2 0 0 0 2 0 0 0 0
.........................................................................................GTAGCCGGATTAACACCCCAC............................................................................................................................................. 21 0 20 0.10 2 2 0 0 0 0 0 0 0
..............................................................................CTCCGGTTCCTGCAGCAGG.......................................................................................................................................................... 19 2 10 0.10 1 0 0 0 0 1 0 0 0
......................................................................................CCTGTAGCCGGATTAACCACCT............................................................................................................................................... 22 3 20 0.10 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................CCGGTGCTGAGTAGAACAATTTGAA......................................................... 25 2 12 0.08 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................GGTGCTGAGTAGAACAAT.............................................................. 18 0 13 0.08 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TGACTGGTAGCGTCACTCC................................... 19 3 13 0.08 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................AGGTGCTGAGTAGAACAAT.............................................................. 19 1 13 0.08 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................CGGTGCTCAGTAGAACAA............................................................... 18 1 13 0.08 1 1 0 0 0 0 0 0 0
.................TTTAGTGCTGGTTGGTCTGGG..................................................................................................................................................................................................................... 21 3 14 0.07 1 1 0 0 0 0 0 0 0
...................................................................................................................GGTAGAGACAGCACAAGGGGGACT................................................................................................................ 24 2 15 0.07 1 0 0 1 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGATTAACAC.................................................................................................................................................. 24 0 15 0.07 1 1 0 0 0 0 0 0 0
..................................................................................................................CGGTAGAGACAGCACAAGAGGGACT................................................................................................................ 25 2 15 0.07 1 0 0 1 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGATTAACCACC................................................................................................................................................ 26 2 16 0.06 1 0 0 0 0 1 0 0 0
....................................................................................TTCCTGTAGCCGGATTAACACC................................................................................................................................................. 22 0 16 0.06 1 1 0 0 0 0 0 0 0
.............AGTTCTCATTGCTGGTTGG........................................................................................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0
...................................................................................GTTCCTGTAGCCGGATTAACACCCC............................................................................................................................................... 25 0 16 0.06 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................CGGTGCTGAGTAGAA.................................................................. 15 0 16 0.06 1 0 0 1 0 0 0 0 0
.....................................................................................TCCTGTAGCCGGATTAACACCC................................................................................................................................................ 22 0 16 0.06 1 1 0 0 0 0 0 0 0
.....................................................................................TCATGTAGCCGGATTAACAC.................................................................................................................................................. 20 1 17 0.06 1 1 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGATTAACC................................................................................................................................................... 23 1 17 0.06 1 1 0 0 0 0 0 0 0
........................................................................CTGACGCTCCGGTTCCTGTAGCCGGATT....................................................................................................................................................... 28 1 17 0.06 1 1 0 0 0 0 0 0 0
......................................................................................CCTGTAGCCGGATTAACACC................................................................................................................................................. 20 0 17 0.06 1 1 0 0 0 0 0 0 0
...................................................................................GTTCCTGTAGCCGGATTAACAC.................................................................................................................................................. 22 0 17 0.06 1 1 0 0 0 0 0 0 0
......................................................................................CCTGTAGCCGGATTAACACCCCA.............................................................................................................................................. 23 0 17 0.06 1 1 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGGTTGA..................................................................................................................................................... 21 2 17 0.06 1 1 0 0 0 0 0 0 0
..................................................................................GGTTCCTGTAGCCGGATTAACA................................................................................................................................................... 22 0 18 0.06 1 1 0 0 0 0 0 0 0
........................................................................CTGACGCTCCGGTTCCTGTAGCC............................................................................................................................................................ 23 1 18 0.06 1 1 0 0 0 0 0 0 0
....................................................................................TTCCTGTAGCCGGATTAACCACCT............................................................................................................................................... 24 3 18 0.06 1 1 0 0 0 0 0 0 0
..........................................................................GACGCTCCGGTTCCTGTAG.............................................................................................................................................................. 19 1 18 0.06 1 1 0 0 0 0 0 0 0
...........................................................................ACGCTCCGGTTCCTGTAGCC............................................................................................................................................................ 20 1 18 0.06 1 1 0 0 0 0 0 0 0
...........................................................................ACGCTCCGGTTCCTGTAGC............................................................................................................................................................. 19 1 18 0.06 1 1 0 0 0 0 0 0 0
...............................................................................AACGGTTCCTGTAGCCGGATT....................................................................................................................................................... 21 2 18 0.06 1 1 0 0 0 0 0 0 0
......................................................................................CCTGTAGCCGGATTAACAC.................................................................................................................................................. 19 0 18 0.06 1 1 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGAGT....................................................................................................................................................... 19 1 18 0.06 1 0 0 0 0 1 0 0 0
................................................................................CCGGTTCCTGTAGCCGGATT....................................................................................................................................................... 20 0 18 0.06 1 1 0 0 0 0 0 0 0
..................................................................................................................CGGTAGAGACAGCACAAGAGGGA.................................................................................................................. 23 2 18 0.06 1 0 0 0 0 1 0 0 0
..................................................................................GGTTCCTGTAGCCGGATTAACC................................................................................................................................................... 22 1 19 0.05 1 1 0 0 0 0 0 0 0
....................................................................................CTCCTGTAGCCGGATTAACCAC................................................................................................................................................. 22 3 19 0.05 1 0 0 0 0 1 0 0 0
...................................................................................GTTCCTGTAGCCGGATTAAC.................................................................................................................................................... 20 0 19 0.05 1 1 0 0 0 0 0 0 0
............................................................................CGCTCCGGTTCCTGTAGCC............................................................................................................................................................ 19 1 19 0.05 1 0 0 0 0 0 0 0 1
................................................................................CCGGTTCCTGTAGCCAGATT....................................................................................................................................................... 20 1 19 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................CTGTAGCCGGATTAACTCCC................................................................................................................................................ 20 1 20 0.05 1 0 0 0 0 1 0 0 0
..................................................................................AGTTCCTTTAGCCGGATTAACA................................................................................................................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................TCCTGTAGCCGGGTTAGC.................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................CTGTAGCCGGATTAACACCC................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................TGTTGCCGGATTTACACCCCAC............................................................................................................................................. 22 2 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGATTAGCA................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ACTCCGCGAGCAATTTAGGAC................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................CGGTTCCTGTAGCCGGAT........................................................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................GTAGCCGGATTAACACCCC............................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................................................GTAGCCGGATTAACCACCT............................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................................GTAGCCGGGTTGACACCCCAC............................................................................................................................................. 21 2 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................ATGGGTCTTGCCGGTGCTG......................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:652938-653188 + dps_2423 ATCTGC--TCCGTATACATGAGTCACGACCAACCTGACCCCCCTACACACGCTTCCCTCCGGGCGCTTATCGCAGACTGTGAGGCCAAGGACATCGGCCTAATTGTGGGGTGGGACGCCA----TCTTT---------------------------------------------------------------------------------------------------------------GTCGTGTTCGCCCTGAGT---------CTCCACCTAAGAAGGAAATTCCCAGGAAGGCC------ACGAC-----TCA---------TCTTGTTACAATTTTCACAGACGCTCGCAGTGAGGCGCTCGGTAAATCCTGCCCTC----------CGGCAAAACAAAGG
droPer2 scaffold_62:71363-71613 + ATCTGC--TCCGTATACATGAGTCACGACCAACCTGACCCCCCTACACACGCTTCCCTCCGGGCGCTTATCGCAGACTGTGAGGCCAAGGACATCGGCCTAATTGTGGGGTGGGACGCCA----TCTTT---------------------------------------------------------------------------------------------------------------GTCGTGTTCGCCCTGAGT---------CTCCACCTAAGAAGGAAATTCCCAGGAAGGCC------ACGAC-----TCA---------TCTTGTTACAATTTTCACCGACGCTCGCAGTGAGGCGCTCGGTAAATCCTGCCCTC----------CGGCAAAACAAAGG
droGri2 scaffold_14906:14120606-14120839 + CCTTCG--TCCAGGAGTGCGAGAAGCACTTCTCGCGAGCCATCCAGA----------------------------------------------------------------------------------------------ACCAATTCACTTCATAACTCAGAAGAAGGCGAACTGGGAAATTTTGAAAGCCAAACTTG----------------------------------------ACCGAACCCTTTCGGAAC---------ACTCACCG-----------------AAAGGCCCGGACAA---CTTAGCTCATCTCTGCAACCTCACAGAAATTTTCACCACAGATTGTAACAAGGCTTTTAAGGCAGCTTGCCCTATCA--------GTAAGCCAATGCA
droAna3 scaffold_13250:3314229-3314397 - ATGTGC--TCGGCGTATATGGCC-ACGACCACGTTGGACCTCCCCCACACATGCTGCTCAGGCGGCTTGTAGAAGACAGCAAAAGCAGAAAAATCGGCCTGCTAATAGGATGCGACGCTCATCACTTTT---------------------------------------------------------------------------------------------------------------AATGGGAAAGCACTGGCACTAAAAGCATTTCACCTAAGAAA----------------------------------------------------------------------------------------------------------------------------GA
droBip1 scf7180000393254:17952-18204 + GTGTGT--TCGGCGTATATGGGCCACTACCAGGAGGCCCTTCCCTCGCACCCGCTACTCAAACAGCTGGTGGAAGACAGCAGGAAGCAAAAGATCGACCTGATCATAGGTTGCGATGCTA----ACGCC---------------------------------------CATCATCATCAAAAAAAACTAGA--CAGTTCCTTGGAGAAACCTCCTGCAAAGGACGTTG-----------------------------------------------------------------------------------------------------------ACTTGCTAAGGGCAGCTTGCGCCAGGGCATTCAATAAAGCTTGTTCCAAAAGCAGATCGAGCAATAACAAGT
droEle1 scf7180000489666:21938-22050 + GACT----TCAACGTACATGGCCTTCGAAAAGGAGGACC---CCCCACACGAGCTAGTCCAACAACTGATCGAAGAGAGCGAGGCGCTCAACATCGGCCTGGTAATCGGCTGCGACGCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777888:5861-6130 + ATGCTA--TCGGCCTACATGGCTTTTGAAAAGGTAGACC---CCCCAGACGCGCTAGTCAGAGGACTGGTCC--------------------------CTAGT-GTCACCTGT----------------------------GCCGGTCAGCTTTGCCAACCCCAGGCGGGCAAACTGGAATAAATACAAAG--AAATTCCATCGAGCTTCCTCCCCAG--------------------------GGAGCCACCAGAAA---------GCAC------------TCTTTGCACTCAGGAG------CTAGA-----TAA---------TATAGTAAACGAATTCACAGAAGCATGCAACGCGGCATTCACAGCTGCATGCCCGTTTA--------GGGAAACCAAGAG
droTak1 scf7180000410974:1872-1988 - GGCTGCTATCGGCCTACATGGCCTTCGAAAAGGAAGACC---CCCCAGACGCGCTAGTCAGAGGACTGGCAAAGGAATGCGAAGAGCTCAAGACAGGTTTGGTAATAGGCTGCGACGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:72881-73192 + GTGCTG--TCATCATACATGGCCTACGAAGGGCAAGAAC---CGCCGGATGAACTGGTTAGGAGACTGGTAGAAGACAGCGAAAAGCAAAACATAGGCCTACAAATAGGCTGTGATGCTA----ACAATTAATCCCTCAAAACCAGCAGTTTTCACAAACCCAAGGAAAATAGGTTGGAAAAT---------------------------------------ACAAAAATATTTTAAGGGAAAAAATGCCAACGGATC---------ACCC------------TCCATACCCCCAAACA------ATCAC-----TAGTCTAATCGAACTAGTTTCAATCTTCACAAAAACCTGCAGCTATGCACTAAAAAAGGCCTGCCCCAATA--------GCA-------AGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ATCTGC--TCCGTATACATGAGTCACGACCAACCTGACCCCCCTACACACGCTTCCCTCCGGGCGCTTATCGCAGACTGTGAGGCCAAGGACATCGGCCTAATTGTGGGGTGGGACGCCA----TCTTT---------------------------------------------------------------------------------------------------------------GTCGTGTTCGCCCTGAGT---------CTCCACCTAAGAAGGAAATTCCCAGGAAGGCC------ACGAC-----TCA---------TCTTGTTACAATTTTCACAGACGCTCGCAGTGAGGCGCTCGGTAAATCCTGCCCTC----------CGGCAAAACAAAGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................CGCAGACTGTGAGGCCAAGGAC...........................................................................................................................................................................................................................................................................................................................2214.0040100000300
.......................................................................GCAGACTGTGAGGCCAAGGA............................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................CGCAGACTGTGAGGCCAAGGA............................................................................................................................................................................................................................................................................................................................2111.0010000000100
...............................................CACGCTTCCCTCCGGGCGCTT...................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................TAAGAAGGAAATTCCCAGGAAGGC.............................................................................................................2411.0010100000000
......................................................................CGCAGACTGTGAGGCCAAGGACAT.........................................................................................................................................................................................................................................................................................................................2411.0010000000010
..........................................................................................ACATCGGCCTAATTGTGGGG.........................................................................................................................................................................................................................................................................................................20200.70140200000570
......................................................................................AAGGACATCGGCCTAATTGTGGG..........................................................................................................................................................................................................................................................................................................23160.5080200000420
.......................................................................................AGGACATCGGCCTAATTGTGG...........................................................................................................................................................................................................................................................................................................21160.4470300000310
......................................................................................AAGGACATCGGCCTAATTGTGGGG.........................................................................................................................................................................................................................................................................................................24160.3860500000100
......................................................................................AAGGACATCGGCCTAATTGTG............................................................................................................................................................................................................................................................................................................21170.3560100000500
..........................................................................................ACATCGGCCTAATTGTGGGGT........................................................................................................................................................................................................................................................................................................21200.3570600000100
............................................................................................ATCGGCCTAATTGTGGGGTG.......................................................................................................................................................................................................................................................................................................20200.3060600000000
.............................................................................................TCGGCCTAATTGTGGGGTGGGAA...................................................................................................................................................................................................................................................................................................2340.2510100000000
...........................................................................................CATCGGCCTAATTGTGGGGTGGG.....................................................................................................................................................................................................................................................................................................2340.2510100000000
...........................................................................................CATCGGCCTAATTGTGGGG.........................................................................................................................................................................................................................................................................................................19200.2040000000220
...........................................................................................CATCGGCCTAATTGTGGGGT........................................................................................................................................................................................................................................................................................................20200.2040200000110
.......................................................................................AGGACATCGGCCTAATTGTGGGG.........................................................................................................................................................................................................................................................................................................23160.1320200000000
......................................................................................AAGGACATCGGCCTAATTGTGGGGT........................................................................................................................................................................................................................................................................................................25160.1320000000200
.....................................................................................CAAGGACATCGGCCTAATTGT.............................................................................................................................................................................................................................................................................................................21180.1120200000000
..................................................................................GGCCAAGGACATCGGCCTAAT................................................................................................................................................................................................................................................................................................................21180.1120200000000
...........................................................................................CATCGGCCTAATTGTGGGGTG.......................................................................................................................................................................................................................................................................................................21200.1020000000110
..........................................................................................ACATCGGCCTAATTGTGGG..........................................................................................................................................................................................................................................................................................................19200.1020000000020
.........................................................................................GACATCGGCCTAATTGTGGG..........................................................................................................................................................................................................................................................................................................20200.1020200000000
............................................................................................ATCGGCCTAATTGTGGGGT........................................................................................................................................................................................................................................................................................................19200.1020100000010
.........................................................................................GACATCGGCCTAATTGTGG...........................................................................................................................................................................................................................................................................................................19200.1020000000020
......................................................................................AAGGACATCGGCCTAATTGTGGGGTG.......................................................................................................................................................................................................................................................................................................26160.0610100000000
....................................................................................CCAAGGACATCGGCCTAATTGTGGGGT........................................................................................................................................................................................................................................................................................................27160.0610100000000
......................................................................................AAGGACATCGGCCTAATTGTGG...........................................................................................................................................................................................................................................................................................................22160.0610000000010
........................................................................................GGACATCGGCCTAATTGTGGG..........................................................................................................................................................................................................................................................................................................21170.0610100000000
........................................................................................GGACATCGGCCTAATTGTGG...........................................................................................................................................................................................................................................................................................................20170.0610000000010
.....................................................................................CAAGGACATCGGCCTAATTGTGGA..........................................................................................................................................................................................................................................................................................................24170.0610000000010
..........................................................................................ACATCGGCCTAATTGTGG...........................................................................................................................................................................................................................................................................................................18200.0510000000010
...........................................................................................CATCGGCCTAATTGTGGAA.........................................................................................................................................................................................................................................................................................................19200.0510100000000
.........................................................................................GACATCGGCCTAATTGTGGGG.........................................................................................................................................................................................................................................................................................................21200.0510100000000
.........................................................................................GACATCGGCCTAATTGTGGGGTT.......................................................................................................................................................................................................................................................................................................23200.0510100000000
............................................................................................ATCGGCCTAATTGTGGGGTT.......................................................................................................................................................................................................................................................................................................20200.0510000000010
.........................................................................................GACATCGGCCTAATTGTGGGGT........................................................................................................................................................................................................................................................................................................22200.0510000000010
droPer2
ATCTGC--TCCGTATACATGAGTCACGACCAACCTGACCCCCCTACACACGCTTCCCTCCGGGCGCTTATCGCAGACTGTGAGGCCAAGGACATCGGCCTAATTGTGGGGTGGGACGCCA----TCTTT---------------------------------------------------------------------------------------------------------------GTCGTGTTCGCCCTGAGT---------CTCCACCTAAGAAGGAAATTCCCAGGAAGGCC------ACGAC-----TCA---------TCTTGTTACAATTTTCACCGACGCTCGCAGTGAGGCGCTCGGTAAATCCTGCCCTC----------CGGCAAAACAAAGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................CGCAGACTGTGAGGCCAAGGACAT.........................................................................................................................................................................................................................................................................................................................2412.002200000
droGri2
CCTTCG--TCCAGGAGTGCGAGAAGCACTTCTCGCGAGCCATCCAGA----------------------------------------------------------------------------------------------ACCAATTCACTTCATAACTCAGAAGAAGGCGAACTGGGAAATTTTGAAAGCCAAACTTG----------------------------------------ACCGAACCCTTTCGGAAC---------ACTCACCG-----------------AAAGGCCCGGACAA---CTTAGCTCATCTCTGCAACCTCACAGAAATTTTCACCACAGATTGTAACAAGGCTTTTAAGGCAGCTTGCCCTATCA--------GTAAGCCAATGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................ACTTCATAACTCAGAAGAAGGCGA..........................................................................................................................................................................................................................................2411.00110
.........................................................................................................................................................................GCGAACTGGGAAATTTTGAAAGCCAAAC..................................................................................................................................................................................................................2811.00110
droAna3
ATGTGC--TCGGCGTATATGGCC-ACGACCACGTTGGACCTCCCCCACACATGCTGCTCAGGCGGCTTGTAGAAGACAGCAAAAGCAGAAAAATCGGCCTGCTAATAGGATGCGACGCTCATCACTTTT---------------------------------------------------------------------------------------------------------------AATGGGAAAGCACTGGCACTAAAAGCATTTCACCTAAGAAA----------------------------------------------------------------------------------------------------------------------------GASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GTGTGT--TCGGCGTATATGGGCCACTACCAGGAGGCCCTTCCCTCGCACCCGCTACTCAAACAGCTGGTGGAAGACAGCAGGAAGCAAAAGATCGACCTGATCATAGGTTGCGATGCTA----ACGCC---------------------------------------CATCATCATCAAAAAAAACTAGA--CAGTTCCTTGGAGAAACCTCCTGCAAAGGACGTTG-----------------------------------------------------------------------------------------------------------ACTTGCTAAGGGCAGCTTGCGCCAGGGCATTCAATAAAGCTTGTTCCAAAAGCAGATCGAGCAATAACAAGTSizeHit CountTotal NormTotal
No Reads
droEle1
GACT----TCAACGTACATGGCCTTCGAAAAGGAGGACC---CCCCACACGAGCTAGTCCAACAACTGATCGAAGAGAGCGAGGCGCTCAACATCGGCCTGGTAATCGGCTGCGACGCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATGCTA--TCGGCCTACATGGCTTTTGAAAAGGTAGACC---CCCCAGACGCGCTAGTCAGAGGACTGGTCC--------------------------CTAGT-GTCACCTGT----------------------------GCCGGTCAGCTTTGCCAACCCCAGGCGGGCAAACTGGAATAAATACAAAG--AAATTCCATCGAGCTTCCTCCCCAG--------------------------GGAGCCACCAGAAA---------GCAC------------TCTTTGCACTCAGGAG------CTAGA-----TAA---------TATAGTAAACGAATTCACAGAAGCATGCAACGCGGCATTCACAGCTGCATGCCCGTTTA--------GGGAAACCAAGAGSizeHit CountTotal NormTotal
No Reads
droTak1
GGCTGCTATCGGCCTACATGGCCTTCGAAAAGGAAGACC---CCCCAGACGCGCTAGTCAGAGGACTGGCAAAGGAATGCGAAGAGCTCAAGACAGGTTTGGTAATAGGCTGCGACGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
GTGCTG--TCATCATACATGGCCTACGAAGGGCAAGAAC---CGCCGGATGAACTGGTTAGGAGACTGGTAGAAGACAGCGAAAAGCAAAACATAGGCCTACAAATAGGCTGTGATGCTA----ACAATTAATCCCTCAAAACCAGCAGTTTTCACAAACCCAAGGAAAATAGGTTGGAAAAT---------------------------------------ACAAAAATATTTTAAGGGAAAAAATGCCAACGGATC---------ACCC------------TCCATACCCCCAAACA------ATCAC-----TAGTCTAATCGAACTAGTTTCAATCTTCACAAAAACCTGCAGCTATGCACTAAAAAAGGCCTGCCCCAATA--------GCA-------AGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................CTAGTTTCAATCTTCACAAAAACC.......................................................2421.50302100000000
..............................................................................................................................................................................................................................................................................................................................................................CCTGCAGCTATGCACTAAAAAAGGCC...............................2611.00101000000000
........TCATCATACATGGCCTACGAAGGGCA.....................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
..............................................................................................................................................................................................................................................................................................................................................TCAATCTTCACAAAAACCTGCAGCT................................................2511.00101000000000
......................................................................................................................................................................................................................................................TGCCAACGGATC---------ACCC------------TCCATACCCC..................................................................................................................2611.00100100000000
......................................................................................................................................................................................................................................................TGCCAACGGATC---------ACCC------------TCCATACCCCCA................................................................................................................2811.00101000000000
..........................................................................GACAGCGAAAAGCAAAACATAGGCC....................................................................................................................................................................................................................................................................................................................25200.8016014200000000
........TCATCATACATGGCCTACGAAGGGCAT....................................................................................................................................................................................................................................................................................................................................................................................2720.50101000000000
..................................................................................................................................................................................AAAAT---------------------------------------ACAAAAATATTTTAAGGGA......................................................................................................................................................................24200.40800000000008
........................................................................................................................................TCAAAACCAGCAGTTTTCACAAACCC.....................................................................................................................................................................................................................................................26190.16303000000000
..........................................................................GACAGCGAAAAGCAAAACATAGGC.....................................................................................................................................................................................................................................................................................................................24200.15303000000000
....................................................................................................................................TCCCTCAAAACCAGCAGTTTTCACA..........................................................................................................................................................................................................................................................2570.14101000000000
..............................................................................GCGAAAAGCAAAACATAGGCCTAC.................................................................................................................................................................................................................................................................................................................24200.10202000000000
........................................................................................................................................................................................................................................................................................................................................................................TGCACTAAAAAAGGCCTGCCC..........................21200.10202000000000
.........................................................................................................................................................................................................................................................................................................................................................................GCACTAAAAAAGGCCTGCCCCAATA--------GC...........27110.09101000000000
........................................................................................................................................................................................................................................................................................................................................................................TGCACTAAAAAAGGCCTGCCCCAATA--------.............26120.08101000000000
.............................................................................................................................................................................................................................................................................................................................................................................TAAAAAAGGCCTGCCCCAATA--------GCA-------AG.26120.08101000000000
.........................................................................................................................................................................................................................................................................................................................................................................GCACTAAAAAAGGCCTGCCCCAAT......................24130.08100100000000
........................................................................................................................................................................................................................................................................................................................................................................TGCACTAAAAAAGGCCTGCCCCA........................23200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................GCACTAAAAAAGGCCTGCCC..........................20200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................CACTAAAAAAGGCCTGCCCCAA.......................22200.05101000000000
..........................................................................GACAGCGAAAAGCAAAACATAGG......................................................................................................................................................................................................................................................................................................................23200.05101000000000
..............................................................................GCGAAAAGCAAAACATAGGCCTA..................................................................................................................................................................................................................................................................................................................23200.05101000000000
..........................................................................GACAGCGAAAAGCAAAACATAGGCT....................................................................................................................................................................................................................................................................................................................25200.05101000000000

Generated: 05/18/2015 at 04:31 AM