ID:

dps_2414

 Coordinate:

XL_group1a:163153-163303 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.5 -26.4 -26.4

Flybase annnotation

CDS [Dpse\GA22852-cds]; exon [dpse_GLEANR_11151:5]; intron [Dpse\GA22852-in]

No Repeatable elements found

mature
  1. Unknown_group_1:94876-94901 -
  2. Unknown_group_151:35054-35079 -
  3. 4_group4:5844937-5844962 +
  4. 4_group4:5895231-5895256 -
  5. XL_group1a:10405-10430 -
  6. dps_2414  XL_group1a:163278-163303 -
  7. XL_group1a:5601062-5601087 +
  8. Unknown_singleton_2301:1688-1713 -
star
  1. Unknown_group_16:11014-11038 +
  2. 3:6320564-6320588 +
  3. XL_group3a:2233823-2233847 +
  4. dps_2414  XL_group1a:163192-163216 -
  5. XL_group1a:486813-486837 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCCGACGTCACGCTCAGACTGATTTTCTGTCTCTCTCGCACGCACTCTTTGTCGTGTCGTTTAATATTAGCAGCGTCTGCCGGAGGAGAGCCATACTGACTAAGTATCGGGTATAAATGTAGAGTTGCGGTCTCCGCAGCAACTCACAACGTTCCCCCTCTTTTTTTTAGCTATTAACTGTGATTCTCTGGTTGATGCAGGTCCAATACCACACAGAGGGCATGGATAGCCTGTACAAGCAAGTACCTAA
**************************************************.(((((((.((((.......((((...)))).......)))).)))).)))........(((......(((.(((((((.((....)).)))))))))).....))).....***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 SRR902010
ovaries
 M059
embryo
 V112
male body		 GSM343916
embryo
 M062
head
 GSM444067
head
 M022
male body
..................................................TGTCGTGTCGTTTAATATTAGCAGCG............................................................................................................................................................................... 26 0 8 15.63 125 118 2 1 0 2 2 0 0 0
..................................................TGTCGTGTCGTTTAATATTAGCAG................................................................................................................................................................................. 24 0 11 8.45 93 39 30 21 2 0 0 1 0 0
..................................................TGTCGTGTCGTTTAATATTAGCAGC................................................................................................................................................................................ 25 0 10 7.40 74 48 8 5 8 0 5 0 0 0
..................................................TGTCGTGTCGTTTAATATTAGCAGCGTC............................................................................................................................................................................. 28 0 8 4.88 39 34 0 0 4 1 0 0 0 0
..................................................TGTCGTGTCGTTTAATATTAGCA.................................................................................................................................................................................. 23 0 11 3.55 39 7 18 4 0 9 1 0 0 0
.........................TTCTGTCTCTCTCGCACGCAC............................................................................................................................................................................................................. 21 0 20 3.05 61 60 0 0 0 0 0 1 0 0
..................................................TGTCGTGTCGTTTAATATTAGCAGCGT.............................................................................................................................................................................. 27 0 8 2.88 23 9 6 0 0 3 5 0 0 0
..............................................TCTTTGTCGTGTCGTTTAATATTAG.................................................................................................................................................................................... 25 0 20 2.55 51 0 51 0 0 0 0 0 0 0
.........................................................TCGTTTAATATTAGCAGCGTCTG........................................................................................................................................................................... 23 0 11 2.45 27 27 0 0 0 0 0 0 0 0
.........................................................TCGTTTAATATTAGCAGCGTCTGCCGG....................................................................................................................................................................... 27 0 9 2.44 22 18 0 0 3 1 0 0 0 0
.........................................................TCGTTTAATATTAGCAGCGTCTGC.......................................................................................................................................................................... 24 0 11 1.91 21 15 0 2 3 1 0 0 0 0
................AGACTGATTTTCTGTCTCTCTCGC................................................................................................................................................................................................................... 24 0 20 1.50 30 30 0 0 0 0 0 0 0 0
.........................................................TCGTTTAATATTAGCAGCGTCTGCCGGA...................................................................................................................................................................... 28 0 9 1.44 13 12 0 0 1 0 0 0 0 0
..............TCAGACTGATTTTCTGTCTCTCT...................................................................................................................................................................................................................... 23 0 20 1.30 26 0 26 0 0 0 0 0 0 0
........TCACGCTCAGACTGATTTTCT.............................................................................................................................................................................................................................. 21 0 20 1.30 26 26 0 0 0 0 0 0 0 0
.........................................................................................................................................CAGCAACTCACAACGTTCCCCCTCT......................................................................................... 25 0 5 1.00 5 3 0 0 2 0 0 0 0 0
.........................................................................................................................................................................................................GTCCAATACCACACAGAGGGTATGG......................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATGGATAGCCTGTACAAGCA......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................TCGTTTAATATTAGCAGCGTCTGCCG........................................................................................................................................................................ 26 0 10 0.90 9 8 0 0 0 0 1 0 0 0
............................................................TTTAATATTAGCAGCGTCTGCCGG....................................................................................................................................................................... 24 0 9 0.78 7 5 2 0 0 0 0 0 0 0
....................................................TCGTGTCGTTTAATATTAGCAGC................................................................................................................................................................................ 23 0 12 0.75 9 1 8 0 0 0 0 0 0 0
............................................ACTCTTTGTCGTGTCGTTTAA.......................................................................................................................................................................................... 21 0 20 0.75 15 15 0 0 0 0 0 0 0 0
.........................................................TCGTTTAATATTAGCAGCGTCT............................................................................................................................................................................ 22 0 11 0.73 8 5 2 0 1 0 0 0 0 0
..........................................................................................................................................................................................CTCGGGTTGTTGCAGGTC............................................... 18 2 3 0.67 2 2 0 0 0 0 0 0 0 0
..................................................................................................GACTAAGTATCGGGTATAAATGTAGA............................................................................................................................... 26 0 20 0.65 13 13 0 0 0 0 0 0 0 0
.................GACTGATTTTCTGTCTCTCTC..................................................................................................................................................................................................................... 21 0 20 0.65 13 13 0 0 0 0 0 0 0 0
....................................................TCGTGTCGTTTAATATTAGCAGCG............................................................................................................................................................................... 24 0 10 0.60 6 2 4 0 0 0 0 0 0 0
................................................TTTGTCGTGTCGTTTAATATTAGCAGCG............................................................................................................................................................................... 28 0 7 0.57 4 3 1 0 0 0 0 0 0 0
...................................................GTCGTGTCGTTTAATATTAGCAGCG............................................................................................................................................................................... 25 0 9 0.56 5 5 0 0 0 0 0 0 0 0
...................................................GTCGTGTCGTTTAATATTAGCAG................................................................................................................................................................................. 23 0 12 0.50 6 6 0 0 0 0 0 0 0 0
.........................................................................................................................................CAGCAACTCACAACGTTCCCCCTCTT........................................................................................ 26 0 4 0.50 2 1 0 0 1 0 0 0 0 0
...................................................GTCGTGTCGTTTAATATTAGCAGC................................................................................................................................................................................ 24 0 11 0.45 5 5 0 0 0 0 0 0 0 0
.......................TTTTCTGTCTCTCTCGCACGC............................................................................................................................................................................................................... 21 0 20 0.45 9 0 9 0 0 0 0 0 0 0
.................................................ATGTCGTGTCGTTTAATATTAGCAGCGA.............................................................................................................................................................................. 28 2 9 0.44 4 0 4 0 0 0 0 0 0 0
.........................................................TCGTTTAATATTAGCAGCGTCTGCC......................................................................................................................................................................... 25 0 10 0.40 4 3 0 0 1 0 0 0 0 0
..................................................TGTCGTGTCGTTTAATATTAGCAGA................................................................................................................................................................................ 25 1 14 0.36 5 2 3 0 0 0 0 0 0 0
................................................TTTGTCGTGTCGTTTAATATTAGCAGC................................................................................................................................................................................ 27 0 9 0.33 3 0 3 0 0 0 0 0 0 0
...................................................GTCGTGTCGTTTAATATTAGCAGCGTC............................................................................................................................................................................. 27 0 9 0.33 3 3 0 0 0 0 0 0 0 0
..............................................TCTTTGTCGTGTCGTTTAATATTAGCAG................................................................................................................................................................................. 28 0 9 0.33 3 0 3 0 0 0 0 0 0 0
............................................................................................................................................CAACTCACAACGTTCCCCCTCT......................................................................................... 22 0 6 0.33 2 1 0 0 1 0 0 0 0 0
..................................................TGTCGTGTCGTTTAATATTAGCAGCGA.............................................................................................................................................................................. 27 1 9 0.33 3 2 0 0 0 0 1 0 0 0
............................................................TTTAATATTAGCAGCGTCTGCCG........................................................................................................................................................................ 23 0 10 0.30 3 3 0 0 0 0 0 0 0 0
.................................................TTGTCGTGTCGTTTAATATTAGCAG................................................................................................................................................................................. 25 0 10 0.30 3 2 1 0 0 0 0 0 0 0
..............................................................................................................................TGCGGTCTCCGCAGCAACTCACAACGT.................................................................................................. 27 0 20 0.30 6 6 0 0 0 0 0 0 0 0
................................................TTTGTCGTGTCGTTTAATATTAGCA.................................................................................................................................................................................. 25 0 10 0.30 3 0 1 2 0 0 0 0 0 0
....................................................TCGTGTCGTTTAATATTAGCAGCGTC............................................................................................................................................................................. 26 0 10 0.30 3 2 0 0 1 0 0 0 0 0
..........................................GCACTCTTTGTCGTGTCGTTTAATAT....................................................................................................................................................................................... 26 0 20 0.30 6 0 0 6 0 0 0 0 0 0
.................................................................................................TGACTAAGTATCGGGTATAAATGTAGAG.............................................................................................................................. 28 0 20 0.25 5 0 5 0 0 0 0 0 0 0
..................................................TGCCGTGTCGTTTAATATTAGCAGCG............................................................................................................................................................................... 26 1 8 0.25 2 2 0 0 0 0 0 0 0 0
..................................................TTTCGTGTCGTTTAATATTAGCAGC................................................................................................................................................................................ 25 1 13 0.23 3 0 0 0 3 0 0 0 0 0
....................................................TCGTGTCGTTTAATATTAGCAG................................................................................................................................................................................. 22 0 13 0.23 3 1 2 0 0 0 0 0 0 0
..............................................TCTTTGTCGTGTCGTTTAATATTAGCA.................................................................................................................................................................................. 27 0 9 0.22 2 0 0 1 0 1 0 0 0 0
..............................................................TAATATTAGCAGCGTCTGCCGG....................................................................................................................................................................... 22 0 9 0.22 2 2 0 0 0 0 0 0 0 0
............................................................TTTAATATTAGCAGCGTCTGCCGGA...................................................................................................................................................................... 25 0 9 0.22 2 2 0 0 0 0 0 0 0 0
................................................TTTGTCGTGTCGTTTAATATTAGCAG................................................................................................................................................................................. 26 0 10 0.20 2 0 2 0 0 0 0 0 0 0
....................................................TCGTGTCGTTTAATATTAGCAGCGTCT............................................................................................................................................................................ 27 0 10 0.20 2 1 0 1 0 0 0 0 0 0
.....................................................CGTGTCGTTTAATATTAGCAGCGTCTG........................................................................................................................................................................... 27 0 10 0.20 2 0 0 2 0 0 0 0 0 0
...................................................GTCGTGTCGTTTAATATTAGCAGCGA.............................................................................................................................................................................. 26 1 10 0.20 2 2 0 0 0 0 0 0 0 0
..........................................................CGTTTAATATTAGCAGCGTCTGC.......................................................................................................................................................................... 23 0 11 0.18 2 2 0 0 0 0 0 0 0 0
...................................................GTCGTGTCGTTTAATATTAGCA.................................................................................................................................................................................. 22 0 12 0.17 2 2 0 0 0 0 0 0 0 0
.......................................................................CAGCGTCTGCCGGAGGAGAG................................................................................................................................................................ 20 0 13 0.15 2 1 0 0 0 0 0 0 1 0
........................................................................................................GTATCGGGTATAAATGTAGAGTTGCG......................................................................................................................... 26 0 20 0.15 3 0 3 0 0 0 0 0 0 0
..................................................TGTCGTGTCGTTTAATATTAGCAA................................................................................................................................................................................. 24 1 14 0.14 2 1 0 0 1 0 0 0 0 0
......................................................................GCAGCGTCTGCCGGAGGAGA................................................................................................................................................................. 20 0 14 0.14 2 2 0 0 0 0 0 0 0 0
................................................TTTGTCGTGTCGATTAATATTAGCAGC................................................................................................................................................................................ 27 1 15 0.13 2 0 2 0 0 0 0 0 0 0
.........................................................................................................................................TAGCAACACACAACGTTCCCCCTCTT........................................................................................ 26 2 8 0.13 1 0 0 0 0 0 1 0 0 0
.........................................................TGGTTTAATATTAGCAGCGTCTGCCGGA...................................................................................................................................................................... 28 1 9 0.11 1 0 0 0 1 0 0 0 0 0
...............................................CTTTGTCGTGTCGTTTAATATTAGCAG................................................................................................................................................................................. 27 0 9 0.11 1 0 1 0 0 0 0 0 0 0
.................................................TTGTCGTGTCGTTTAATATTAGCAGC................................................................................................................................................................................ 26 0 9 0.11 1 0 0 1 0 0 0 0 0 0
..........................................................CGTTTAATATTAGCAGCGTCTGCCGGA...................................................................................................................................................................... 27 0 9 0.11 1 1 0 0 0 0 0 0 0 0
..................................................TGTCGCGTCGTTTAATATTAGCAGCGTC............................................................................................................................................................................. 28 1 9 0.11 1 1 0 0 0 0 0 0 0 0
.......................................................TGTCGTTTAATATTAGCAGCGTCTGCCGG....................................................................................................................................................................... 29 0 9 0.11 1 0 0 0 1 0 0 0 0 0
...........................................................GTTTAATATTAGCAGCGTCTGCCGG....................................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0 0 0 0 0
..............................................................TAATATTAGCAGCGTCTGCCGGA...................................................................................................................................................................... 23 0 9 0.11 1 1 0 0 0 0 0 0 0 0
..................................................TGTCGTGTCGTCTAATATTAGCAGCG............................................................................................................................................................................... 26 1 10 0.10 1 1 0 0 0 0 0 0 0 0
.......................................................TGTCGTTTAATATTAGCAGCGTCTGCCG........................................................................................................................................................................ 28 0 10 0.10 1 1 0 0 0 0 0 0 0 0
.........CACGCTCAGACTGATTTTCTGTC........................................................................................................................................................................................................................... 23 0 20 0.10 2 0 0 2 0 0 0 0 0 0
..........................................................................................................ATCGGGTATAAATGTAGAGTTGCGG........................................................................................................................ 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..............................................................TAATATTAGCAGCGTCTGCC......................................................................................................................................................................... 20 0 10 0.10 1 1 0 0 0 0 0 0 0 0
..................................................TGTCGTGTCGTTTAATATTAGAAGCG............................................................................................................................................................................... 26 1 10 0.10 1 0 0 0 0 0 1 0 0 0
...............................................................................GCCGGAGGAGAGCCATACTGA....................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.................................................TTGTCGTGTCGTTTAATATTAGCA.................................................................................................................................................................................. 24 0 10 0.10 1 0 0 0 0 1 0 0 0 0
..................................................................................................GACTAAGTATCGGGTATA....................................................................................................................................... 18 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..................................TCTCGCACGCACTCTTTGTCGTGTCGT.............................................................................................................................................................................................. 27 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..........................................................CGTTTAATATTAGCAGCGTCTGCCG........................................................................................................................................................................ 25 0 10 0.10 1 1 0 0 0 0 0 0 0 0
........................................................GTCGTTTAATATTAGCAGCGTCTGCCG........................................................................................................................................................................ 27 0 10 0.10 1 1 0 0 0 0 0 0 0 0
....GACGTCACGCTCAGACTGATTT................................................................................................................................................................................................................................. 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.............................................................TTAATATTAGCAGCGTCTGC.......................................................................................................................................................................... 20 0 11 0.09 1 0 0 0 1 0 0 0 0 0
............................................................TTTAATATTAGCAGCGTCTG........................................................................................................................................................................... 20 0 11 0.09 1 1 0 0 0 0 0 0 0 0
....................................................TCGTGTCGTTTAATATTAGCAGCGA.............................................................................................................................................................................. 25 1 11 0.09 1 1 0 0 0 0 0 0 0 0
.......................................................TGTCGTTTAATATTAGCAGCG............................................................................................................................................................................... 21 0 11 0.09 1 1 0 0 0 0 0 0 0 0
..........................................................CGTTTAATATTAGCAGCGTCT............................................................................................................................................................................ 21 0 11 0.09 1 1 0 0 0 0 0 0 0 0
..................................................TTTCGTGTCGTTTAATATTAGCAGCGTC............................................................................................................................................................................. 28 1 11 0.09 1 0 0 0 1 0 0 0 0 0
....................................................................TAGCAGCGTCTGCCGGAGGAGAGCCATAC.......................................................................................................................................................... 29 0 11 0.09 1 0 1 0 0 0 0 0 0 0
............................................................TTTAATATTAGCAGCGTCTGC.......................................................................................................................................................................... 21 0 11 0.09 1 0 0 0 1 0 0 0 0 0
..................................................TGTCGTGTCGTTTAATAGTAGCA.................................................................................................................................................................................. 23 1 12 0.08 1 1 0 0 0 0 0 0 0 0
..................................................TTTCGTGTCGTTTAATATTAGCAGCGA.............................................................................................................................................................................. 27 2 12 0.08 1 0 0 0 1 0 0 0 0 0
.........................................................TCGTTTAATATTAGCAGCGTCC............................................................................................................................................................................ 22 1 12 0.08 1 0 0 0 1 0 0 0 0 0
....................................................TCGTGTCGTTTAATATTAGCAGCGTCA............................................................................................................................................................................ 27 1 12 0.08 1 1 0 0 0 0 0 0 0 0
....................................................................TAGCAGCGTCTGCCGGAGGAGAGC............................................................................................................................................................... 24 0 12 0.08 1 1 0 0 0 0 0 0 0 0
.......................................................TGTCGTTTAATATTAGCAGCGTCTC........................................................................................................................................................................... 25 1 12 0.08 1 0 0 0 0 1 0 0 0 0
...................................................................TTAGCAGCGTCTGCCGGAGGA................................................................................................................................................................... 21 0 13 0.08 1 1 0 0 0 0 0 0 0 0
......................................................GTGTCGTTTAATATTAGCAG................................................................................................................................................................................. 20 0 13 0.08 1 0 1 0 0 0 0 0 0 0
.....................................................................AGCAGCGTCTGCCGGAGGAG.................................................................................................................................................................. 20 0 13 0.08 1 1 0 0 0 0 0 0 0 0
.......................................................TGTCGTTTAATATTAGCAGC................................................................................................................................................................................ 20 0 13 0.08 1 1 0 0 0 0 0 0 0 0
....................................................................TAGCAGCGTCTGCCGGAGGAGA................................................................................................................................................................. 22 0 13 0.08 1 0 1 0 0 0 0 0 0 0
.........................................................TAGTTTAATATTAGCAGCGTATGCCGGA...................................................................................................................................................................... 28 2 14 0.07 1 0 0 0 0 1 0 0 0 0
.........................................................TCGTTTAATATTAGCAGCGTCTGCCGAA...................................................................................................................................................................... 28 1 14 0.07 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................CAACTCACAACGTTCCCCCTCTA........................................................................................ 23 1 14 0.07 1 1 0 0 0 0 0 0 0 0
................................................................ATATTAGCAGCGTCTGCCGG....................................................................................................................................................................... 20 0 14 0.07 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................CAGCAACTCACAACGTTCCCCCTCTAG....................................................................................... 27 2 15 0.07 1 0 0 1 0 0 0 0 0 0
.........................................................TCCTTTACTATTAGCAGCGTCTGC.......................................................................................................................................................................... 24 2 16 0.06 1 0 0 0 1 0 0 0 0 0
..................................................TGTCGTGTCGTTTAATATTAGCAT................................................................................................................................................................................. 24 1 16 0.06 1 1 0 0 0 0 0 0 0 0
........................................................................AGCGTCTGCCGGAGGAGAG................................................................................................................................................................ 19 0 16 0.06 1 1 0 0 0 0 0 0 0 0
...............................................................AATATTAGCAGCGTCTGC.......................................................................................................................................................................... 18 0 16 0.06 1 1 0 0 0 0 0 0 0 0
......................................................................GCAGCGTCTGGCGGAGGAGAGGGA............................................................................................................................................................. 24 3 16 0.06 1 0 0 0 0 0 1 0 0 0
..................................................TGTCGTGTCGTTTAATATTAGCAAA................................................................................................................................................................................ 25 2 18 0.06 1 0 0 1 0 0 0 0 0 0
..................................................TGTCGTGTCGTTTAATATTAGCAGCA............................................................................................................................................................................... 26 1 19 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................CTGACTAAGTATCGGGTATAAATGT.................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................................................AATGTAGAGTTGCGGTCTCCG.................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0
...............................................................................................................GTATAAATGTAGAGTTGCG......................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................TGCGGTCTCCGCTGCAACTCACAA..................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................TGCCGGAGGAGAGCCATACTGACT..................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................GTAGAGTTGCGGTCTCCGCA................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................TCGTTTAATATTAGCAGCGTCTGA.......................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................CCGCAGCAACTCACAACGTTCC............................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................CTTTGTCGTGTCGTTTAATATTA..................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TCCGCAGCAACTCACAACGTTCCCCC............................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0
....................................................................................................................AATGTAGAGTTGCGGTCTC.................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................TCTTTGTCTTGTCGTTTAATATTAG.................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................AGCGTCTGCCGGAGGAGT................................................................................................................................................................. 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................CTCTCTCGCACGCACTCTTTG....................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0
...........................................CACTCTTTGTCGTGTCGTTTA........................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0
..............................................TCTTTGTCGTGTCGTTTACTATTAG.................................................................................................................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.................................................................................................TGACTAAGTATCGGGTATAAAT.................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0
.............................................CTCTTTGTCGTGTCGTTTAA.......................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................................................................CTAAGTATCGGGTATAAATGTAGAGT............................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TCCGCAGCAACTCACAACGT.................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TATCGGGTATAAATGTAGAG.............................................................................................................................. 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0
..................................................................................................GACTAAGTATCGGGGATAAATGTAGA............................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................................................................................GGTATAAATGTAGAGTTGCG......................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.....................GATTTTCTGTCTCTCTCG.................................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCGGCTGCAGTGCGAGTCTGACTAAAAGACAGAGAGAGCGTGCGTGAGAAACAGCACAGCAAATTATAATCGTCGCAGACGGCCTCCTCTCGGTATGACTGATTCATAGCCCATATTTACATCTCAACGCCAGAGGCGTCGTTGAGTGTTGCAAGGGGGAGAAAAAAAATCGATAATTGACACTAAGAGACCAACTACGTCCAGGTTATGGTGTGTCTCCCGTACCTATCGGACATGTTCGTTCATGGATT
*****************************************************************************************.(((((((.((((.......((((...)))).......)))).)))).)))........(((......(((.(((((((.((....)).)))))))))).....))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 SRR902011
testis
 M059
embryo
 GSM343916
embryo
 GSM444067
head
 M062
head
...................................................................................CTCCTCTCGGTATGACTGATTCA................................................................................................................................................. 23 0 20 7.85 157 157 0 0 0 0 0 0 0
.........................................GCGTGAGAAACAGCACAGCAAATTAT........................................................................................................................................................................................ 26 0 20 5.60 112 112 0 0 0 0 0 0 0
...................................................................................CTCCTCTCGGTATGACTGATTCAT................................................................................................................................................ 24 0 20 5.30 106 0 106 0 0 0 0 0 0
..................................AGAGCGTGCGTGAGAAACAGC.................................................................................................................................................................................................... 21 0 20 4.70 94 94 0 0 0 0 0 0 0
..............................................................................................................................ACGCCAGAGGCGTCGTTGAGT........................................................................................................ 21 0 20 4.40 88 82 0 0 0 4 2 0 0
.....................................................................................CCTCTCGGTATGACTGATTCATA............................................................................................................................................... 23 0 20 3.80 76 76 0 0 0 0 0 0 0
...............................................................................................................................CGCCAGAGGCGTCGTTGAGT........................................................................................................ 20 0 20 3.30 66 66 0 0 0 0 0 0 0
.CGGCTGCAGTGCGAGTCTGACTA................................................................................................................................................................................................................................... 23 0 7 2.00 14 11 1 1 0 0 1 0 0
...........................................GTGAGAAACAGCACAGCAAAT........................................................................................................................................................................................... 21 0 20 1.35 27 27 0 0 0 0 0 0 0
.................................................................................GCCTCCTCTCGGTATGACTGATTCAT................................................................................................................................................ 26 0 20 1.20 24 0 24 0 0 0 0 0 0
.................................GAGAGCGTGCGTGAGAAACA...................................................................................................................................................................................................... 20 0 20 1.20 24 24 0 0 0 0 0 0 0
................................................................................GGCCTCCTCTCGGTATGACTGATTCAT................................................................................................................................................ 27 0 20 1.10 22 0 18 3 0 0 1 0 0
GCGGCTGCAGTGCGAGTCTGACTA................................................................................................................................................................................................................................... 24 0 3 1.00 3 0 2 0 1 0 0 0 0
.........................................................................................................................................................................................AGAGACTAACTACGTCCAGG.............................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................CTCCTCTCGGTATGACTGATT................................................................................................................................................... 21 0 20 0.90 18 18 0 0 0 0 0 0 0
...............................................................................CGGCCTCCTCTCGGTATGA......................................................................................................................................................... 19 0 20 0.90 18 18 0 0 0 0 0 0 0
...............................................GAAACAGCACAGCAAATTATAAT..................................................................................................................................................................................... 23 0 20 0.85 17 0 17 0 0 0 0 0 0
.....................................................................................CCTCTCGGTATGACTGATTCAT................................................................................................................................................ 22 0 20 0.85 17 0 17 0 0 0 0 0 0
...................................................................................CTCCTCTCGGTATGACTGAT.................................................................................................................................................... 20 0 20 0.80 16 16 0 0 0 0 0 0 0
.................................................................................................................................CCAGAGGCGTCGTTGAGTGTT..................................................................................................... 21 0 20 0.80 16 16 0 0 0 0 0 0 0
............................................TGAGAAACAGCACAGCAAATTAT........................................................................................................................................................................................ 23 0 20 0.70 14 0 0 0 0 14 0 0 0
..GGCTGCAGTGCGAGTCTGACT.................................................................................................................................................................................................................................... 21 0 20 0.65 13 0 0 13 0 0 0 0 0
...........GCGAGTCTGACTAAAAGACAG........................................................................................................................................................................................................................... 21 0 20 0.65 13 13 0 0 0 0 0 0 0
......................................................................CGTCGCAGACGGCCTCCTCTC................................................................................................................................................................ 21 0 13 0.62 8 4 0 0 2 0 0 2 0
..........................................................................................................................CTCAACGCCAGAGGCGTCGTTGAGTGTT..................................................................................................... 28 0 20 0.60 12 12 0 0 0 0 0 0 0
................................................................................GGCCTCCTCTCGGTATGACTGAT.................................................................................................................................................... 23 0 20 0.60 12 12 0 0 0 0 0 0 0
.............................................................................................................................AACGCCAGAGGCGTCGTTGAGTGTT..................................................................................................... 25 0 20 0.55 11 11 0 0 0 0 0 0 0
.......CAGTGCGAGTCTGACTAAAA................................................................................................................................................................................................................................ 20 0 20 0.50 10 10 0 0 0 0 0 0 0
...............................................GAAACAGCACAGCAAATTATA....................................................................................................................................................................................... 21 0 20 0.50 10 10 0 0 0 0 0 0 0
...............................................................................CGGCCTCCTCTCGGTATGACTGATTCAT................................................................................................................................................ 28 0 20 0.45 9 0 9 0 0 0 0 0 0
..................................................................................................................................CAGAGGCGTCGTTGAGTGT...................................................................................................... 19 0 20 0.40 8 8 0 0 0 0 0 0 0
........................AAAGACAGAGAGAGCGTGCGT.............................................................................................................................................................................................................. 21 0 20 0.40 8 8 0 0 0 0 0 0 0
.............................................................................................................................AACGCCAGAGGCGTCGTTGAGTGT...................................................................................................... 24 0 20 0.40 8 8 0 0 0 0 0 0 0
......................................................................CGTCGCAGACGGCCTCCTCT................................................................................................................................................................. 20 0 14 0.36 5 3 0 1 0 0 0 1 0
.........................................................................CGCAGACGGCCTCCTCTCGGT............................................................................................................................................................. 21 0 20 0.35 7 7 0 0 0 0 0 0 0
......................................CGTGCGTGAGAAACAGCACAGC............................................................................................................................................................................................... 22 0 20 0.35 7 0 0 0 0 0 7 0 0
....CTGCAGTGCGAGTCTGACTA................................................................................................................................................................................................................................... 20 0 20 0.35 7 0 7 0 0 0 0 0 0
...........................................................................................................................TCAACGCCAGAGGCGTCGTTGAG......................................................................................................... 23 0 20 0.35 7 7 0 0 0 0 0 0 0
......GCAGTGCGAGTCTGACTAAAAG............................................................................................................................................................................................................................... 22 0 20 0.35 7 7 0 0 0 0 0 0 0
..................................AGAGCGTGCGTGAGAAAC....................................................................................................................................................................................................... 18 0 20 0.35 7 7 0 0 0 0 0 0 0
..GGCTGCAGTGCGAGTCTG....................................................................................................................................................................................................................................... 18 0 20 0.35 7 7 0 0 0 0 0 0 0
GCGGCTGCAGTGCGAGTCTGA...................................................................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0
....................................................................ATCGTCGCAGACGGCCTCCTC.................................................................................................................................................................. 21 0 13 0.31 4 2 0 2 0 0 0 0 0
....................................................................ATCGTCGCAGACGGCCTCCT................................................................................................................................................................... 20 0 13 0.31 4 3 0 0 0 0 0 1 0
..............................AGAGAGAGCGTGCGTGAGAAAC....................................................................................................................................................................................................... 22 0 20 0.30 6 0 5 0 0 0 1 0 0
..........................................................................................................................................TCGTTGAGTGTTGCAAGGGG............................................................................................. 20 0 20 0.25 5 4 0 1 0 0 0 0 0
...............................................................................................................................................................................................................CTGGTGTGTCTCCCGAAC.......................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0
................................................................................................................................GCCAGAGGCGTCGTTGAGT........................................................................................................ 19 0 20 0.25 5 0 0 2 2 0 1 0 0
..................................AGAGCGTGCGTGAGAAACA...................................................................................................................................................................................................... 19 0 20 0.25 5 0 0 5 0 0 0 0 0
...............................................................................................................................CGCCAGAGGCGTCGTTGAGTG....................................................................................................... 21 0 20 0.20 4 4 0 0 0 0 0 0 0
...........................................GTGAGAAACAGCACAGCAAA............................................................................................................................................................................................ 20 0 20 0.20 4 4 0 0 0 0 0 0 0
........................................................CAGCAAATTATAATCGTCGCAGA............................................................................................................................................................................ 23 0 11 0.18 2 0 0 0 2 0 0 0 0
.....................................................................TCGTCGCAGACGGCCTCCTCT................................................................................................................................................................. 21 0 13 0.15 2 2 0 0 0 0 0 0 0
.......................................................................GTCGCAGACGGCCTCCTCTCG............................................................................................................................................................... 21 0 13 0.15 2 2 0 0 0 0 0 0 0
...GCTGCAGTGCGAGTCTGACTAA.................................................................................................................................................................................................................................. 22 0 20 0.15 3 3 0 0 0 0 0 0 0
..........TGCGAGTCTGACTAAAAGACA............................................................................................................................................................................................................................ 21 0 20 0.15 3 0 0 0 3 0 0 0 0
.....................................................................................CCTCTCGGTATGACTGATTCATAG.............................................................................................................................................. 24 0 20 0.15 3 1 0 0 2 0 0 0 0
...............................................................................CGGCCTCCTCTCGGTATGACTG...................................................................................................................................................... 22 0 20 0.15 3 0 3 0 0 0 0 0 0
................................................................................GGCCTCCTCTCGGTATGACTGA..................................................................................................................................................... 22 0 20 0.15 3 3 0 0 0 0 0 0 0
.....................CTAAAAGACAGAGAGAGCGTGCGTGA............................................................................................................................................................................................................ 26 0 20 0.15 3 0 0 0 3 0 0 0 0
.............................................................................................................................TACGCCAGAGGCGTCGTTGAGT........................................................................................................ 22 1 20 0.15 3 3 0 0 0 0 0 0 0
..........................................................................................................................CTCAACGCCAGAGGCGTCGTTGAG......................................................................................................... 24 0 20 0.15 3 3 0 0 0 0 0 0 0
....CTGCAGTGCGAGTCTGACTAAAAG............................................................................................................................................................................................................................... 24 0 20 0.15 3 3 0 0 0 0 0 0 0
................................................................................................................................GCCAGAGGCGTCGTTGAG......................................................................................................... 18 0 20 0.15 3 3 0 0 0 0 0 0 0
..........................................................................................................................CTCAACGCCAGAGGCGTCGTT............................................................................................................ 21 0 20 0.15 3 3 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GACATGTTAGTTCAGGGA.. 18 2 7 0.14 1 1 0 0 0 0 0 0 0
.CGGCTGCAGTGCGAGTCTGA...................................................................................................................................................................................................................................... 20 0 7 0.14 1 1 0 0 0 0 0 0 0
.CGGCTGCAGTGCGAGTCTGACTAAA................................................................................................................................................................................................................................. 25 0 7 0.14 1 0 0 0 0 1 0 0 0
.............................................................AATTATAATCGTCGCAGACGGCCT...................................................................................................................................................................... 24 0 9 0.11 1 1 0 0 0 0 0 0 0
..............................................................ATTATAATCGTCGCAGACGGCCT...................................................................................................................................................................... 23 0 9 0.11 1 0 0 0 1 0 0 0 0
...................................................................................CTCCTCTCGTTATGACTGATTCAT................................................................................................................................................ 24 1 20 0.10 2 2 0 0 0 0 0 0 0
........................AAAGACAGAGAGAGCGTG................................................................................................................................................................................................................. 18 0 20 0.10 2 0 0 0 0 0 2 0 0
..................................................................................CCTCCTCTCGGTATGACTGATTCATA............................................................................................................................................... 26 0 20 0.10 2 0 2 0 0 0 0 0 0
TCGGCTGCAGTGCGAGTCTGACTA................................................................................................................................................................................................................................... 24 1 10 0.10 1 1 0 0 0 0 0 0 0
...........................................................................................................................TCAATGCCAGAGGCGTCGTTGACT........................................................................................................ 24 2 20 0.10 2 2 0 0 0 0 0 0 0
..................................................................................CCTCCTCTCGGTATGACTGATGCAT................................................................................................................................................ 25 1 20 0.10 2 0 0 0 0 2 0 0 0
.............................CAGAGAGAGCGTGCGTGAGAAACAGC.................................................................................................................................................................................................... 26 0 20 0.10 2 0 0 0 2 0 0 0 0
........................................TGCGTGAGAAACAGCACAGCAAATTAT........................................................................................................................................................................................ 27 0 20 0.10 2 0 2 0 0 0 0 0 0
..............................AGAGAGAGCGTGCGTGAGAAACAG..................................................................................................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0 0 0 0
...............................GAGAGAGCGTGCGTGAGAAACA...................................................................................................................................................................................................... 22 0 20 0.10 2 0 0 2 0 0 0 0 0
............................................................................................................................CAACGCCAGAGGCGTCGTTGAGTC....................................................................................................... 24 1 20 0.10 2 2 0 0 0 0 0 0 0
...........................................................................................................................TCAACGCCAGAGGCGTCGTTGA.......................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0 0
..................TGACTAAAAGACAGAGAGAGCGTGCGT.............................................................................................................................................................................................................. 27 0 20 0.10 2 0 0 0 2 0 0 0 0
.........................AAGACAGAGAGAGCGTGCGTGAGAAA........................................................................................................................................................................................................ 26 0 20 0.10 2 0 2 0 0 0 0 0 0
....................ACTAAAAGACAGAGAGAGCGT.................................................................................................................................................................................................................. 21 0 20 0.10 2 2 0 0 0 0 0 0 0
..........................................................................GCAGACGGCCTCCTCTCGGTA............................................................................................................................................................ 21 0 20 0.10 2 0 0 2 0 0 0 0 0
.CGCCTGCGGTGCGAGTCTGACAA................................................................................................................................................................................................................................... 23 3 11 0.09 1 0 0 0 0 0 1 0 0
.......................................................ACAGCAAATTATAATCGTCGC............................................................................................................................................................................... 21 0 11 0.09 1 1 0 0 0 0 0 0 0
.......................................................ACAGCAAATTATAATCGTCGCA.............................................................................................................................................................................. 22 0 11 0.09 1 1 0 0 0 0 0 0 0
.....................................................................TCGTCGCAGACGGCCTCCTCTC................................................................................................................................................................ 22 0 12 0.08 1 1 0 0 0 0 0 0 0
......................................................................CGTCGCAGACGGCCTCCTCTCGGTAT........................................................................................................................................................... 26 0 12 0.08 1 1 0 0 0 0 0 0 0
.CCGCTGCAGTGCGAGTCTGACGA................................................................................................................................................................................................................................... 23 2 12 0.08 1 0 0 0 0 1 0 0 0
.CGCCTGCGGTGCGAGTCTGA...................................................................................................................................................................................................................................... 20 2 12 0.08 1 0 0 1 0 0 0 0 0
.................................................................ATAATCGTCGCAGACGGCCTC..................................................................................................................................................................... 21 0 13 0.08 1 1 0 0 0 0 0 0 0
.................................................................ATAATCGTCGCAGACGGCCTCC.................................................................................................................................................................... 22 0 13 0.08 1 1 0 0 0 0 0 0 0
.....................................................................TCGTCGCAGACGGCCTCCTC.................................................................................................................................................................. 20 0 13 0.08 1 1 0 0 0 0 0 0 0
TCGGCTGCAGTGAGAGTCTGACAA................................................................................................................................................................................................................................... 24 3 13 0.08 1 0 0 0 0 1 0 0 0
.............................................GAGAAACAGCACAGCTAATTATAATCGT.................................................................................................................................................................................. 28 1 14 0.07 1 0 0 0 1 0 0 0 0
........................................................................TCGCAGACGGCCTCCTCTCGG.............................................................................................................................................................. 21 0 16 0.06 1 1 0 0 0 0 0 0 0
.............................CAGAGAGAGCGTGCGTGAGAAA........................................................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 1 0 0 0
TCGGCTGCAGTCCGAGTATGACTA................................................................................................................................................................................................................................... 24 3 20 0.05 1 0 0 0 0 0 1 0 0
.......................................................................................TCTCGGTATGACTGATTC.................................................................................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0
....................ACTAAAAGACAGAGAGAGCGTG................................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................CGGCCTCCTCTCGGTATGACTGATTC.................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................................................................TAACGCCAGAGGCGTCGTTGAGT........................................................................................................ 23 1 20 0.05 1 0 0 0 0 1 0 0 0
.................................................................................................................................CCAGAGGCGTCGTTGAGTGTTGCAA................................................................................................. 25 0 20 0.05 1 0 0 0 0 1 0 0 0
......GCAGTGCGAGTCTGACTAAA................................................................................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 1 0 0 0 0
............................................................................................................................CAATGCCAGAGGCGTCGTTGAGTGTT..................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................TTCATAGCCCATATTTACATCTCAA............................................................................................................................ 25 0 20 0.05 1 0 0 0 0 1 0 0 0
..................................................................................CCTCCTCTCGGTATGACTGATTCAA................................................................................................................................................ 25 1 20 0.05 1 0 0 0 0 1 0 0 0
..................................................................................CCTCCTCTCGGTAGGACTGATTCAT................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................................................................CAACTCCAGAGGCGTCGTTGAGT........................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................CAGAGGCGTCGTTGAGTGTT..................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0
...........................................................................................................................TCAACGCCAGAGGCGTCGTTGAGTGT...................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 1 0 0
............................ACAGAGAGAGCGTGCGTGAGAAAC....................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0
........................................................................................CTCGGTATGACTGATTCATAGCCCATAT....................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................CAGACGGCCTCCTCTCGGTAT........................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0
.....................................................................................CCTCTCGGTATGCCTGATTCATA............................................................................................................................................... 23 1 20 0.05 1 0 0 0 1 0 0 0 0
...........................................................................................................................TTAACGCCAGAGGCGTCGTTGAGT........................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................AGGCGTCGTTGAGTGTTGCAAGGG.............................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................CCTCCTCTCGGTATGACTGATTCAT................................................................................................................................................ 25 0 20 0.05 1 0 0 1 0 0 0 0 0
....................................................................................................................................GAGGCGTCGTTGAGTGTTGCAA................................................................................................. 22 0 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................................................................CCAACGCCAGAGGCGTCGTTGAGT........................................................................................................ 24 1 20 0.05 1 0 0 0 0 1 0 0 0
...........................................GTGAGAAACAGCACAGCAA............................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................................GAGAAACAGCAAAGCAAATTATAATCGT.................................................................................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0 0 0 0
............................ACAGAGAGAGCGTGCGTGAGAAACAGC.................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................AAAAGACAGAGAGAGCGTGCGTG............................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................GCCAGAGGCGTCGTTGAGTGTTG.................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................ATGACTGATTCATAGCCCATATTTA.................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
......................TAAAAGACAGAGAGAGCGT.................................................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................CGTGAGAAACAGCACAGCAAATGAT........................................................................................................................................................................................ 25 1 20 0.05 1 0 0 0 0 0 1 0 0
.............................................GAGAAACAGCACAGCAAATTATAAT..................................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0
............................................................................................GTATGACTGATTCATAGCCCATAT....................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................GTCGTTGAGTGTTGCAAG................................................................................................ 18 0 20 0.05 1 0 0 0 1 0 0 0 0
........................................................................................CTCGGTATGACTGATTCATAGCC............................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................CGTCGCAGACGGCCTCCTCTG................................................................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................CGCCAGAGGCGTCGTTGAGTGTTGC................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................GACAGAGAGAGCGTGCGTGAGAAA........................................................................................................................................................................................................ 24 0 20 0.05 1 0 0 1 0 0 0 0 0
............................................TGAGAAACAGCACACCAAATTAT........................................................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................GGCCTCCTCTCGGTATGACTGATTCATA............................................................................................................................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0
.................................................................................GCCTCCTCTCGGTATGTCTGATT................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................CCTCTCGGTATGACTGATTCA................................................................................................................................................. 21 0 20 0.05 1 0 0 0 1 0 0 0 0
..................................................................................CCTCCTCTCGGTATGACT....................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 1
....................ACTAAAAGACAGAGAGAGCGTGC................................................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 1 0 0 0 0
............................................................................................................................CAACGCCAGAGGCGTCGTTGAGTGTT..................................................................................................... 26 0 20 0.05 1 0 0 0 0 1 0 0 0
...........................................................................................GGTATGACTGATTCATAGCCCATAT....................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0
.............................................GAGAAACAGCACAGCAAATTATAATCG................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................CTCGGTATGACTGATTCA................................................................................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................AGACGGCCTCCTCTCGGTATG.......................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0
..............................................................................................................................CCGCCAGAGGCGTCGTTGAGTGTT..................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0 0 0
............................................................................................GTATGACTGATTCATAGCCCATATT...................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................TCTCGGTATGACTGATTCAT................................................................................................................................................ 20 0 20 0.05 1 0 1 0 0 0 0 0 0
.........................................GCGTGAGAAACAGCTCAGCAAATTAT........................................................................................................................................................................................ 26 1 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................ATGACTGATTCATAGCCCATATTTAC................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0
.......................................GTGCGTGAGAAACAGCACAGCAAATTA......................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0
............CGAGTCTGACTAAAAGACAGAGA........................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0
...........GCGAGTCTGACTAAAAGACAGAGAG....................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
...................................................................................CTCCTCTCGGTATGACTGATTCATTG.............................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XL_group1a:163103-163353 - dps_2414 CGCCGACGTCA------------CGCTC----A-----------GACTGATTTTCTGTCTCTCTCGCA----CGCACTCT--TT--GTCGTGTCGTTTAATATTAGCAGCGTCTGCCGGAGGAGAGC----------CATACTGACTAAGTA------TCGGGTATAAATGTAGAGTTGCGGTCTCCGCAGCAACTC----ACAACGTTCCCCCTCTTTT-TTTTAGCTATTAACTGTGATTCTCTGGTTGATGCAGGTCCAATACCACACAGAGGGCATGGATAGCCTGTACAAGCAAGTACCTAA
droPer2 scaffold_26:507635-507886 + dpe_1282 CGCCGACGTCA------------CGCTC----A-----------GACTGATTTTCTGTCTCTCTCGCA----CGCACTCT--TT--GTCGTGTCGTTTAATATTAGCAGCGTCTGCCGGAGGAGAGC----------CATACTGACTAAGTA------TCGGGTATAAATGTAGAGTTGCGGTCTCCGCAGCAACTC----ACAACGTTCCCCCTCGTTTTTTTTAGCTATTAACTGTGATTCTCTGATTGATGCAGGTCCAATACCACACAGAGGGCATGGATAGCCTGTACAAGCAAGTACCTAA
droWil2 scf2_1100000004762:552675-552752 - CGGCAAAGTCA------------CGAAC----AGTGACTTTTCTCAATAACTTTAATATTTTCTGAGC----TA--------TT--GTCGTGGATTTTAATATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA
droVir3 scaffold_12723:941567-941625 - TCAC--------------------TCTC----T-----------GTCTCACTCTCTCTCTCTCTCTCT----CTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTGTGTTTGTTAGT
droMoj3 scaffold_6359:4171304-4171356 - C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATCAATTACCACACCGAGGGCATGGAAAGTCTCTATGAGTTGGTTCCCAG
droGri2 scaffold_15203:1530599-1530657 - TTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGATCAATTATCACACCGAAGGCATGGACAGTCTCTATGAACTGATACCCCG
droAna3 scaffold_12392:1586-1648 + TGGCGATACCT------------TACTC----T-----------CATTCACTCTCTCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTTCTCTTTTCCTCT
droBip1 scf7180000395863:33050-33171 + ACTT-----TG------------CACAC----A-----------CCCTTATTTCCT-------TTGCA----CGCAGTAT--ATAAGTCGGAACGACCGGAATCGGCCGACTATATCCTATAGCTGC----------CATA-TAACTGATTGATCGGATATGGTATAAATT---------------------------------------------------------------------------------------------------------------------------------TAGTGTT
droKik1 scf7180000302696:1642471-1642525 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATTAAATATCACACGGAGGGCCTGGAGAGCCTCTACGCTGAAGTGCCCAG
droFic1 scf7180000453901:899614-899668 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAATACCACACGGAGGGCTTGGAGAGCCTTTATGAGGAAGTGCCCAA
droEle1 scf7180000491001:1708187-1708241 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGATCAAGTATCACACGGAGGGCTTGGAGAGCCTCTATAAGGAAGTGCCCAG
droRho1 scf7180000779506:224374-224428 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAGTACCACACAGAGGGCTTGGAGAGCCTCTATAAGGAAGTTCCCAG
droBia1 scf7180000301760:2131212-2131266 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAGTACCACACAGAGGGCCTGGAGAGCCTCTACAAGGAGGTGCCCAG
droTak1 scf7180000412562:3430-3617 - GCAA----TTTTATTTTAATTTTCTAACGCCCA-----------CAAAAATTATATATCTATCTCCCTCGCACTCCCTTTAGCT---GAGTTACGATTATTAGTTGGGACACCAACCCGAGTACAGCGTTCGCATTCCCTT-TAACTGAGTG------ACGGGTATTAG---ATAGTCGTGA------CACCAACCCGACTATAGCGTTCTCTCTTGTTT-------------------------------------------------------------------------------------TT
droEug1 scf7180000409048:38199-38257 - TCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAGATTAAGTACCATACAGGGGGCCTGGAAAGTCTCTATGAGGAAGTGCCCAG
dm3 chrX:2146844-2146898 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTACCACACAGAGGGTATGGATAGCCTTTACAAAGAAGTGCCCAG
droSim2 x:1984523-1984577 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTACCACACAGAGGGTCTGGATAGCCTCTACAAGGAAGTGCCCAG
droSec2 scaffold_10:1932748-1932802 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTATCACACAGAGGGTCTGGATAGCCTCTACAAGGAAGTGCCCAG
droYak3 v2_chr3L_random_018:19359-19435 + ACT--------------------------------------------------------------------------------------------------------------------------------------------AACTGAGTA------TCGGGTATCAG---ATAGTCGGGG----------AACTCGACTATAACGTTCTCTCTTGTTT-TTTTATCAATTAA----------------------------------------------------------------------TTG
droEre2 scaffold_4644:2112156-2112210 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAGTACCACACAGAGGGTCTGGATAGCCTCTACAAGGAAGTGCCGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGCCGACGTCA------------CGCTC----A-----------GACTGATTTTCTGTCTCTCTCGCA----CGCACTCT--TT--GTCGTGTCGTTTAATATTAGCAGCGTCTGCCGGAGGAGAGC----------CATACTGACTAAGTA------TCGGGTATAAATGTAGAGTTGCGGTCTCCGCAGCAACTC----ACAACGTTCCCCCTCTTTT-TTTTAGCTATTAACTGTGATTCTCTGGTTGATGCAGGTCCAATACCACACAGAGGGCATGGATAGCCTGTACAAGCAAGTACCTAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................T--GTCGTGTCGTTTAATATTAGCAGCG....................................................................................................................................................................................................26815.63125011800202120
...................................................................................T--GTCGTGTCGTTTAATATTAGCAG......................................................................................................................................................................................................24118.45930392100021300
...................................................................................T--GTCGTGTCGTTTAATATTAGCAGC.....................................................................................................................................................................................................25107.407404880500580
...................................................................................T--GTCGTGTCGTTTAATATTAGCAGCGTC..................................................................................................................................................................................................2884.883903440001000
...................................................................................T--GTCGTGTCGTTTAATATTAGCA.......................................................................................................................................................................................................23113.553907001094180
....................................................TTCTGTCTCTCTCGCA----CGCAC......................................................................................................................................................................................................................................21203.056106001000000
...................................................................................T--GTCGTGTCGTTTAATATTAGCAGCGT...................................................................................................................................................................................................2782.88230900503060
.............................................................................TCT--TT--GTCGTGTCGTTTAATATTAG.........................................................................................................................................................................................................25202.555100000000510
............................................................................................TCGTTTAATATTAGCAGCGTCTG................................................................................................................................................................................................23112.452702700000000
............................................................................................TCGTTTAATATTAGCAGCGTCTGCCGG............................................................................................................................................................................................2792.442201830001000
............................................................................................TCGTTTAATATTAGCAGCGTCTGC...............................................................................................................................................................................................24111.912101530001200
................................A-----------GACTGATTTTCTGTCTCTCTCGC................................................................................................................................................................................................................................................24201.503003000000000
............................................................................................TCGTTTAATATTAGCAGCGTCTGCCGGA...........................................................................................................................................................................................2891.441301210000000
..........................TC----A-----------GACTGATTTTCTGTCTCTCT...................................................................................................................................................................................................................................................23201.302600000000260
........TCA------------CGCTC----A-----------GACTGATTTTCT...........................................................................................................................................................................................................................................................21201.302602600000000
............................................................................................................................................................................................CAGCAACTC----ACAACGTTCCCCCTCT..........................................................................................2551.0050320000000
......................................................................................................................................................................................................................................................................................ATGGATAGCCTGTACAAGCA.........2011.0010100000000
............................................................................................TCGTTTAATATTAGCAGCGTCTGCCG.............................................................................................................................................................................................26100.9090800100000
...............................................................................................TTTAATATTAGCAGCGTCTGCCGG............................................................................................................................................................................................2490.7870500000020
.......................................................................................TCGTGTCGTTTAATATTAGCAGC.....................................................................................................................................................................................................23120.7590100000080
...........................................................................ACTCT--TT--GTCGTGTCGTTTAA...............................................................................................................................................................................................................21200.751501500000000
............................................................................................TCGTTTAATATTAGCAGCGTCT.................................................................................................................................................................................................22110.7380510000020
...............................................................................................................................................GACTAAGTA------TCGGGTATAAATGTAGA....................................................................................................................................26200.651301300000000
............................................GACTGATTTTCTGTCTCTCTC..................................................................................................................................................................................................................................................21200.651301300000000
.......................................................................................TCGTGTCGTTTAATATTAGCAGCG....................................................................................................................................................................................................24100.6060200000040
...............................................................................T--TT--GTCGTGTCGTTTAATATTAGCAGCG....................................................................................................................................................................................................2870.5740300000010
......................................................................................GTCGTGTCGTTTAATATTAGCAGCG....................................................................................................................................................................................................2590.5650500000000
......................................................................................GTCGTGTCGTTTAATATTAGCAG......................................................................................................................................................................................................23120.5060600000000
............................................................................................................................................................................................CAGCAACTC----ACAACGTTCCCCCTCTT.........................................................................................2640.5020110000000
......................................................................................GTCGTGTCGTTTAATATTAGCAGC.....................................................................................................................................................................................................24110.4550500000000
..................................................TTTTCTGTCTCTCTCGCA----CGC........................................................................................................................................................................................................................................21200.4590000000090
............................................................................................TCGTTTAATATTAGCAGCGTCTGCC..............................................................................................................................................................................................25100.4040310000000
...................................................................................T--GTCGTGTCGTTTAATATTAGCAGA.....................................................................................................................................................................................................25140.3650200000030
...............................................................................T--TT--GTCGTGTCGTTTAATATTAGCAGC.....................................................................................................................................................................................................2790.3330000000030
......................................................................................GTCGTGTCGTTTAATATTAGCAGCGTC..................................................................................................................................................................................................2790.3330300000000
.............................................................................TCT--TT--GTCGTGTCGTTTAATATTAGCAG......................................................................................................................................................................................................2890.3330000000030
...............................................................................................................................................................................................CAACTC----ACAACGTTCCCCCTCT..........................................................................................2260.3320110000000
...................................................................................T--GTCGTGTCGTTTAATATTAGCAGCGA...................................................................................................................................................................................................2790.3330200100000
...............................................................................................TTTAATATTAGCAGCGTCTGCCG.............................................................................................................................................................................................23100.3030300000000
..................................................................................TT--GTCGTGTCGTTTAATATTAGCAG......................................................................................................................................................................................................25100.3030200000010
.................................................................................................................................................................................TGCGGTCTCCGCAGCAACTC----ACAACGT...................................................................................................27200.3060600000000
...............................................................................T--TT--GTCGTGTCGTTTAATATTAGCA.......................................................................................................................................................................................................25100.3030000000210
.......................................................................................TCGTGTCGTTTAATATTAGCAGCGTC..................................................................................................................................................................................................26100.3030210000000
.........................................................................GCACTCT--TT--GTCGTGTCGTTTAATAT............................................................................................................................................................................................................26200.3060000000600
..............................................................................................................................................TGACTAAGTA------TCGGGTATAAATGTAGAG...................................................................................................................................28200.2550000000050
.......................................................................................TCGTGTCGTTTAATATTAGCAG......................................................................................................................................................................................................22130.2330100000020
.............................................................................TCT--TT--GTCGTGTCGTTTAATATTAGCA.......................................................................................................................................................................................................2790.2220000001100
.................................................................................................TAATATTAGCAGCGTCTGCCGG............................................................................................................................................................................................2290.2220200000000
...............................................................................................TTTAATATTAGCAGCGTCTGCCGGA...........................................................................................................................................................................................2590.2220200000000
...............................................................................T--TT--GTCGTGTCGTTTAATATTAGCAG......................................................................................................................................................................................................26100.2020000000020
.......................................................................................TCGTGTCGTTTAATATTAGCAGCGTCT.................................................................................................................................................................................................27100.2020100000100
........................................................................................CGTGTCGTTTAATATTAGCAGCGTCTG................................................................................................................................................................................................27100.2020000000200
......................................................................................GTCGTGTCGTTTAATATTAGCAGCGA...................................................................................................................................................................................................26100.2020200000000
.............................................................................................CGTTTAATATTAGCAGCGTCTGC...............................................................................................................................................................................................23110.1820200000000
......................................................................................GTCGTGTCGTTTAATATTAGCA.......................................................................................................................................................................................................22120.1720200000000
..........................................................................................................CAGCGTCTGCCGGAGGAGAG.....................................................................................................................................................................................20130.1520100010000
.....................................................................................................................................................GTA------TCGGGTATAAATGTAGAGTTGCG..............................................................................................................................26200.1530000000030
...................................................................................T--GTCGTGTCGTTTAATATTAGCAA......................................................................................................................................................................................................24140.1420110000000
.........................................................................................................GCAGCGTCTGCCGGAGGAGA......................................................................................................................................................................................20140.1420200000000
..............................................................................CT--TT--GTCGTGTCGTTTAATATTAGCAG......................................................................................................................................................................................................2790.1110000000010
..................................................................................TT--GTCGTGTCGTTTAATATTAGCAGC.....................................................................................................................................................................................................2690.1110000000100
.............................................................................................CGTTTAATATTAGCAGCGTCTGCCGGA...........................................................................................................................................................................................2790.1110100000000
..........................................................................................TGTCGTTTAATATTAGCAGCGTCTGCCGG............................................................................................................................................................................................2990.1110010000000
..............................................................................................GTTTAATATTAGCAGCGTCTGCCGG............................................................................................................................................................................................2590.1110100000000
.................................................................................................TAATATTAGCAGCGTCTGCCGGA...........................................................................................................................................................................................2390.1110100000000
..........................................................................................TGTCGTTTAATATTAGCAGCGTCTGCCG.............................................................................................................................................................................................28100.1010100000000
.........CA------------CGCTC----A-----------GACTGATTTTCTGTC........................................................................................................................................................................................................................................................23200.1020000000200
.......................................................................................................................................................A------TCGGGTATAAATGTAGAGTTGCGG.............................................................................................................................25200.1020200000000
.................................................................................................TAATATTAGCAGCGTCTGCC..............................................................................................................................................................................................20100.1010100000000
..................................................................................................................GCCGGAGGAGAGC----------CATACTGA..................................................................................................................................................................21200.1020200000000
..................................................................................TT--GTCGTGTCGTTTAATATTAGCA.......................................................................................................................................................................................................24100.1010000001000
...............................................................................................................................................GACTAAGTA------TCGGGTATA............................................................................................................................................18200.1020200000000
.............................................................TCTCGCA----CGCACTCT--TT--GTCGTGTCGT...................................................................................................................................................................................................................27200.1020200000000
.............................................................................................CGTTTAATATTAGCAGCGTCTGCCG.............................................................................................................................................................................................25100.1010100000000
...........................................................................................GTCGTTTAATATTAGCAGCGTCTGCCG.............................................................................................................................................................................................27100.1010100000000
....GACGTCA------------CGCTC----A-----------GACTGATTT..............................................................................................................................................................................................................................................................22200.1020200000000
................................................................................................TTAATATTAGCAGCGTCTGC...............................................................................................................................................................................................20110.0910010000000
...............................................................................................TTTAATATTAGCAGCGTCTG................................................................................................................................................................................................20110.0910100000000
.......................................................................................TCGTGTCGTTTAATATTAGCAGCGA...................................................................................................................................................................................................25110.0910100000000
..........................................................................................TGTCGTTTAATATTAGCAGCG....................................................................................................................................................................................................21110.0910100000000
.............................................................................................CGTTTAATATTAGCAGCGTCT.................................................................................................................................................................................................21110.0910100000000
.......................................................................................................TAGCAGCGTCTGCCGGAGGAGAGC----------CATAC.....................................................................................................................................................................29110.0910000000010
...............................................................................................TTTAATATTAGCAGCGTCTGC...............................................................................................................................................................................................21110.0910010000000
............................................................................................TCGTTTAATATTAGCAGCGTCC.................................................................................................................................................................................................22120.0810010000000
.......................................................................................TCGTGTCGTTTAATATTAGCAGCGTCA.................................................................................................................................................................................................27120.0810100000000
.......................................................................................................TAGCAGCGTCTGCCGGAGGAGAGC----------..........................................................................................................................................................................24120.0810100000000
..........................................................................................TGTCGTTTAATATTAGCAGCGTCTC................................................................................................................................................................................................25120.0810000001000
......................................................................................................TTAGCAGCGTCTGCCGGAGGA........................................................................................................................................................................................21130.0810100000000
.........................................................................................GTGTCGTTTAATATTAGCAG......................................................................................................................................................................................................20130.0810000000010
........................................................................................................AGCAGCGTCTGCCGGAGGAG.......................................................................................................................................................................................20130.0810100000000
..........................................................................................TGTCGTTTAATATTAGCAGC.....................................................................................................................................................................................................20130.0810100000000
.......................................................................................................TAGCAGCGTCTGCCGGAGGAGA......................................................................................................................................................................................22130.0810000000010
...............................................................................................................................................................................................CAACTC----ACAACGTTCCCCCTCTA.........................................................................................23140.0710100000000
...................................................................................................ATATTAGCAGCGTCTGCCGG............................................................................................................................................................................................20140.0710100000000
............................................................................................................................................................................................CAGCAACTC----ACAACGTTCCCCCTCTAG........................................................................................27150.0710000000100
...................................................................................T--GTCGTGTCGTTTAATATTAGCAT......................................................................................................................................................................................................24160.0610100000000
...........................................................................................................AGCGTCTGCCGGAGGAGAG.....................................................................................................................................................................................19160.0610100000000
..................................................................................................AATATTAGCAGCGTCTGC...............................................................................................................................................................................................18160.0610100000000
...................................................................................T--GTCGTGTCGTTTAATATTAGCAAA.....................................................................................................................................................................................................25180.0610000000100
...................................................................................T--GTCGTGTCGTTTAATATTAGCAGCA....................................................................................................................................................................................................26190.0510100000000
.............................................................................................................................................CTGACTAAGTA------TCGGGTATAAATGT.......................................................................................................................................25200.0510100000000
.......................................................................................................................................................................AATGTAGAGTTGCGGTCTCCG.......................................................................................................................21200.0510000001000
..................................................................................................................................................................GTATAAATGTAGAGTTGCG..............................................................................................................................19200.0510000000010
.................................................................................................................TGCCGGAGGAGAGC----------CATACTGACT................................................................................................................................................................24200.0510000001000
..........................................................................................................................................................................GTAGAGTTGCGGTCTCCGCA.....................................................................................................................20200.0510100000000
............................................................................................TCGTTTAATATTAGCAGCGTCTGA...............................................................................................................................................................................................24200.0510100000000
.........................................................................................................................................................................................CCGCAGCAACTC----ACAACGTTCC................................................................................................22200.0510010000000
..............................................................................CT--TT--GTCGTGTCGTTTAATATTA..........................................................................................................................................................................................................23200.0510100000000
........................................................................................................................................................................................TCCGCAGCAACTC----ACAACGTTCCCCC.............................................................................................26200.0510001000000
.......................................................................................................................................................................AATGTAGAGTTGCGGTCTC.........................................................................................................................19200.0510000000010
...........................................................................................................AGCGTCTGCCGGAGGAGT......................................................................................................................................................................................18200.0510100000000
..........................................................CTCTCTCGCA----CGCACTCT--TT--G............................................................................................................................................................................................................................21200.0510000000100
..........................................................................CACTCT--TT--GTCGTGTCGTTTA................................................................................................................................................................................................................21200.0510000010000
..............................................................................................................................................TGACTAAGTA------TCGGGTATAAAT.........................................................................................................................................22200.0510000100000
............................................................................CTCT--TT--GTCGTGTCGTTTAA...............................................................................................................................................................................................................20200.0510000000010
.................................................................................................................................................CTAAGTA------TCGGGTATAAATGTAGAGT..................................................................................................................................26200.0510000000010
........................................................................................................................................................................................TCCGCAGCAACTC----ACAACGT...................................................................................................20200.0510100000000
......................................................................................................................................................TA------TCGGGTATAAATGTAGAG...................................................................................................................................20200.0510000000100
.................................................................................................................................................................GGTATAAATGTAGAGTTGCG..............................................................................................................................20200.0510000000010
................................................GATTTTCTGTCTCTCTCG.................................................................................................................................................................................................................................................18200.0511000000000
droPer2
CGCCGACGTCA------------CGCTC----A-----------GACTGATTTTCTGTCTCTCTCGCA----CGCACTCT--TT--GTCGTGTCGTTTAATATTAGCAGCGTCTGCCGGAGGAGAGC----------CATACTGACTAAGTA------TCGGGTATAAATGTAGAGTTGCGGTCTCCGCAGCAACTC----ACAACGTTCCCCCTCGTTTTTTTTAGCTATTAACTGTGATTCTCTGATTGATGCAGGTCCAATACCACACAGAGGGCATGGATAGCCTGTACAAGCAAGTACCTAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................CCAATACCACACAGAGGGC.............................1912.002200000
.....................................................................................................................................................................................................................................ATTAACTGTGATTCTCTGATTGATGC....................................................2612.002200000
............................................................................................TCGTTTAATATTAGCAGCGTCTGCCGG............................................................................................................................................................................................27131.38185121000
............................................................................................TCGTTTAATATTAGCAGCGTCTG................................................................................................................................................................................................23131.00130120001
............................................................................................TCGTTTAATATTAGCAGCGTCTGCCG.............................................................................................................................................................................................26130.628170000
............................................................................................TCGTTTAATATTAGCAGCGTCTGCCGGA...........................................................................................................................................................................................28130.547250000
............................................................................................TCGTTTAATATTAGCAGCGTCTGC...............................................................................................................................................................................................24130.466042000
..............................................................................................................................................................TCGGGTATAAATGTAGAGTTG................................................................................................................................21200.408070001
.....................................................................................................................................................................TAAATGTAGAGTTGCGGTCT..........................................................................................................................20200.255000005
.............................................................................................CGTTTAATATTAGCAGCGTCTGCCG.............................................................................................................................................................................................25130.233030000
............................................................................................TCGTTTAATATTAGCAGCGTCTGCC..............................................................................................................................................................................................25130.152020000
............................................................................................TCGTTTAATATTAGCAGCGTCT.................................................................................................................................................................................................22130.152020000
............................................................................................TCGTTTAATATTAGCAGCGTC..................................................................................................................................................................................................21140.142020000
.................................................................................................TAATATTAGCAGCGTCTGCCGG............................................................................................................................................................................................22140.142010001
.......................................................................................TCGTGTCGTTTAATATTAGCAGCGTCTG................................................................................................................................................................................................28100.101010000
...................................................................................................ATATTAGCAGCGTCTGCCGGA...........................................................................................................................................................................................21200.102020000
.......................................................................................................................................................................AATGTAGAGTTGCGGTCTCC........................................................................................................................20200.102000002
...................................................................................................................................................................................CGGTCTCCGCAGCAACTC----ACA.......................................................................................................21200.102020000
..........................................................................................TGTCGTTTAATATTAGCAGCGTCTGCCG.............................................................................................................................................................................................28110.091010000
..........................................................................................TGTCGTTTAATATTAGCAGCGTCTGC...............................................................................................................................................................................................26110.091010000
.............................................................................................CGTTTAATATTAGCAGCGTCTGCCGGA...........................................................................................................................................................................................27130.081010000
..................................................................................TT--GTCGTGTCGTTTAATATTAGCAGCG....................................................................................................................................................................................................27130.081010000
...............................................................................T--TT--GTCGTGTCGTTTAATATTAGCAGC.....................................................................................................................................................................................................27130.081010000
...................................................................................T--GTCGTGTCGTTTAATATTAGCAG......................................................................................................................................................................................................24130.081010000
.............................................................................................CGTTTAATATTAGCAGCGTCTGCC..............................................................................................................................................................................................24130.081010000
.............................................................................................CGTTTAATATTAGCAGCGTCTG................................................................................................................................................................................................22130.081010000
..............................................................................................GTTTAATATTAGCAGCGTCTG................................................................................................................................................................................................21130.081000001
...................................................................................T--GTCGTGTCGTTTAATATTAGCAGC.....................................................................................................................................................................................................25130.081001000
.............................................................................................CGTTTAATATTAGCAGCGTCTGC...............................................................................................................................................................................................23130.081010000
............................................................................................TCGTTTAATATTAGCAGCGT...................................................................................................................................................................................................20140.071010000
.................................................................................................TAATATTAGCAGCGTCTGC...............................................................................................................................................................................................19140.071010000
..........................................................................................TGTCGTTTAATATTAGCAGCG....................................................................................................................................................................................................21150.071010000
...................................................................................T--GTCGTGTCGTTTAATATTAGCA.......................................................................................................................................................................................................23160.061000001
............................................................................................TCGTTTAATATTAGCAGCG....................................................................................................................................................................................................19170.061000001
....................................................................................................................................................................ATAAATGTAGAGTTGCGGTCTCCGCA.....................................................................................................................26200.051001000
.........................................................................................................................................................................TGTAGAGTTGCGGTCTCCGCAG....................................................................................................................22200.051001000
...............................................................................................................................................GACTAAGTA------TCGGGTATAAATGT.......................................................................................................................................23200.051010000
..............................................................................................................................................................TCGGGTATAAATGTAGAGTTGCGGT............................................................................................................................25200.051010000
...................................................................................T--GTCGTGTCGTTTAATATTAG.........................................................................................................................................................................................................21200.051010000
........................................................................................................................................................................ATGTAGAGTTGCGGTCTCCGC......................................................................................................................21200.051010000
................................................................................................................................................................................TTGCGGTCTCCGCAGCAACTC----A.........................................................................................................22200.051010000
droWil2
CGGCAAAGTCA------------CGAAC----AGTGACTTTTCTCAATAACTTTAATATTTTCTGAGC----TA--------TT--GTCGTGGATTTTAATATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCAC--------------------TCTC----T-----------GTCTCACTCTCTCTCTCTCTCTCT----CTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTGTGTTTGTTAGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATCAATTACCACACCGAGGGCATGGAAAGTCTCTATGAGTTGGTTCCCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................ATCAATTACCACACCGAGGGCATG..........................2411.001000001
................................................................................................................................................................................................................................................................GATCAATTACCACACCGAGGGCA............................2311.001000100
droGri2
TTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGATCAATTATCACACCGAAGGCATGGACAGTCTCTATGAACTGATACCCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................AATTATCACACCGAAGGCATGGAC.......................2411.00110
droAna3
TGGCGATACCT------------TACTC----T-----------CATTCACTCTCTCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTTCTCTTTTCCTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........T------------TACTC----T-----------CATTCACTCTCTCTCTCT.....................................................................................................................................................................................................................................................25200.50101000000
..........T------------TACTC----T-----------CATTCACTCTCTCTCTCTC....................................................................................................................................................................................................................................................26200.357601000
.........CT------------TACTC----T-----------CATTCACTCTCTCTC........................................................................................................................................................................................................................................................23200.357070000
.........CT------------TACTC----T-----------CATTCACTCTCTCTCTCT.....................................................................................................................................................................................................................................................26200.357070000
.........CT------------TACTC----T-----------CATTCACTCTCTCTCT.......................................................................................................................................................................................................................................................24200.204400000
.........CT------------TACTC----T-----------CATTCACTCTCTCTCC.......................................................................................................................................................................................................................................................24200.204040000
.......................TACTC----T-----------CATTCACTCTCTCTCTCTCTCG.................................................................................................................................................................................................................................................28200.204400000
.......................TACTC----T-----------CATTCACTCTCTCTCTCTCT...................................................................................................................................................................................................................................................26200.153003000
......TACCT------------TACTC----T-----------CATTCACTCTCTCTCTC......................................................................................................................................................................................................................................................28200.153030000
.........................CTC----T-----------CATTCACTCTCTCTCTCTCTCGCA----...........................................................................................................................................................................................................................................28200.153300000
................................T-----------CATTCACTCTCTCTCTCTCTCGCA----C..........................................................................................................................................................................................................................................26200.153300000
..........................TC----T-----------CATTCACTCTCTCTCTCTCTCGCA----C..........................................................................................................................................................................................................................................28200.153120000
.......................TACTC----T-----------CATTCACTCTCTCTCC.......................................................................................................................................................................................................................................................22200.102020000
.......................................................TCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTT.............22200.102200000
......................................................CTCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTTC...........25200.102020000
....................................................CTCTCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTTC...........27200.102200000
.........................CTC----T-----------CATTCACTCTCTCTCTCTCTC..................................................................................................................................................................................................................................................25200.102200000
........................ACTC----T-----------CATTCACTCTCTCTCTCTCT...................................................................................................................................................................................................................................................25200.102200000
.........................CTC----T-----------CATTCACTCTCTCTCTCTCTCGCA----C..........................................................................................................................................................................................................................................29200.102200000
.......................TACTC----T-----------CATTCACTCTCTCTCTCTCTC..................................................................................................................................................................................................................................................27200.102020000
.......................TACTC----T-----------CATTCACTCTCTCTC........................................................................................................................................................................................................................................................21200.051010000
........................ACTC----T-----------CATTCACTCTCTCTCTCT.....................................................................................................................................................................................................................................................23200.051010000
.............................................................TCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTTCTC.........20200.051010000
...............................................TCACTCTCTCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...................24200.051010000
.......................TACTC----T-----------CATTCACTCTCTC..........................................................................................................................................................................................................................................................19200.051001000
........CCT------------TACTC----T-----------CATTCACTCTCTCTC........................................................................................................................................................................................................................................................24200.051010000
...........................................................TCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTTC...........20200.051010000
................................T-----------CATTCACTCTCTCTCTCTCTCGCA----...........................................................................................................................................................................................................................................25200.051010000
......TACCT------------TACTC----T-----------CATTCACT...............................................................................................................................................................................................................................................................19200.051010000
....GATACCT------------TACTC----T-----------CATTCACTCTCTCT.........................................................................................................................................................................................................................................................27200.051010000
................................................................CGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTTCTCTTTTCCTC.25200.051010000
.......................TACTC----T-----------CATTCACTCTCTCTCTC......................................................................................................................................................................................................................................................23200.051001000
.........CT------------TACTC----T-----------CATTCACTCTCTCTCTCTC....................................................................................................................................................................................................................................................27200.051010000
...................................................TCTCTCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATC...............24200.051010000
.........................CTC----T-----------CATTCACTCTCTCTCTCTCTCG.................................................................................................................................................................................................................................................26200.051001000
.................................................ACTCTCTCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCT..............27200.051100000
TGGCGATACCT------------TACTC----T-----------CATTCACT...............................................................................................................................................................................................................................................................25200.051100000
.......ACCT------------TACTC----T-----------CATTCACTCTCTCTCTC......................................................................................................................................................................................................................................................27200.051100000
...CGATACCT------------TACTC----T-----------CATTCACTCTCTCTC........................................................................................................................................................................................................................................................29200.051100000
........................ACTC----T-----------CATTCACTCTCTCTCTCTCTCG.................................................................................................................................................................................................................................................27200.051100000
.......ACCT------------TACTC----T-----------CATTCACTCTCTC..........................................................................................................................................................................................................................................................23200.051100000
......TACCT------------TACTC----T-----------CATTCACTCTCTCTCT.......................................................................................................................................................................................................................................................27200.051100000
.......ACCT------------TACTC----T-----------CATTCACTCTCTCTCT.......................................................................................................................................................................................................................................................26200.051100000
................................................CACTCTCTCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATC...............27200.051100000
.........CT------------TACTC----T-----------CATTCACTCTCTC..........................................................................................................................................................................................................................................................21200.051010000
......TACCT------------TACTC----T-----------CATTCACTCTCTCTC........................................................................................................................................................................................................................................................26200.051001000
...........................C----T-----------CATTCACTCTCTCTCTCTCTCGCA----...........................................................................................................................................................................................................................................26200.051100000
..................................................CTCTCTCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTT.............27200.051100000
......TACCT------------TACTC----T-----------CATTCACTC..............................................................................................................................................................................................................................................................20200.051001000
......TACCT------------TACTC----T-----------CATTCACTCTC............................................................................................................................................................................................................................................................22200.051010000
.........................CTC----T-----------CATTCACTCTCTCTCTCTCT...................................................................................................................................................................................................................................................24200.051001000
TGGCGATACCT------------TACTC----T-----------CATTCACTCT.............................................................................................................................................................................................................................................................27200.051010000
..GCGATACCT------------TACTC----T-----------CATTCACTCTC............................................................................................................................................................................................................................................................26200.051100000
......TACCT------------TACTC----T-----------CATTCACTCTCTCTCTCT.....................................................................................................................................................................................................................................................29200.051100000
....GATACCT------------TACTC----T-----------CATTCACTCTCTC..........................................................................................................................................................................................................................................................26200.051010000
................................................CACTCTCTCTCTCTCTCGCA----CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA.................25200.051100000
droBip1
ACTT-----TG------------CACAC----A-----------CCCTTATTTCCT-------TTGCA----CGCAGTAT--ATAAGTCGGAACGACCGGAATCGGCCGACTATATCCTATAGCTGC----------CATA-TAACTGATTGATCGGATATGGTATAAATT---------------------------------------------------------------------------------------------------------------------------------TAGTGTTSizeHit CountTotal NormTotal
No Reads
droKik1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATTAAATATCACACGGAGGGCCTGGAGAGCCTCTACGCTGAAGTGCCCAGSizeHit CountTotal NormTotal
No Reads
droFic1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAATACCACACGGAGGGCTTGGAGAGCCTTTATGAGGAAGTGCCCAASizeHit CountTotal NormTotal
No Reads
droEle1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGATCAAGTATCACACGGAGGGCTTGGAGAGCCTCTATAAGGAAGTGCCCAGSizeHit CountTotal NormTotal
No Reads
droRho1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAGTACCACACAGAGGGCTTGGAGAGCCTCTATAAGGAAGTTCCCAGSizeHit CountTotal NormTotal
No Reads
droBia1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAGTACCACACAGAGGGCCTGGAGAGCCTCTACAAGGAGGTGCCCAGSizeHit CountTotal NormTotal
No Reads
droTak1
GCAA----TTTTATTTTAATTTTCTAACGCCCA-----------CAAAAATTATATATCTATCTCCCTCGCACTCCCTTTAGCT---GAGTTACGATTATTAGTTGGGACACCAACCCGAGTACAGCGTTCGCATTCCCTT-TAACTGAGTG------ACGGGTATTAG---ATAGTCGTGA------CACCAACCCGACTATAGCGTTCTCTCTTGTTT-------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droEug1
TCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAGATTAAGTACCATACAGGGGGCCTGGAAAGTCTCTATGAGGAAGTGCCCAGSizeHit CountTotal NormTotal
No Reads
dm3
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTACCACACAGAGGGTATGGATAGCCTTTACAAAGAAGTGCCCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................ATGGATAGCCTTTACAAAGAAGT......2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000
.....................................................................................................................................................................................................................................................................................TATGGATAGCCTTTACAAAGA.........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................................................TACCACACAGAGGGTATGGATAGCCTT.................2712.0020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................CACAGAGGGTATGGATAG.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................ATGGATAGCCTTTACAAAGA.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TATGGATAGCCTTTACAAAGAAGTGCC...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CACACAGAGGGTATGGAT.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GGGTATGGATAGCCTTTACAAAGAA........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CACAGAGGGTATGGATAGC....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................................ATAGCCTTTACAAAGAAGT......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................ACAGAGGGTATGGATAGCCTTTAC..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GATCCGGTACCACACAGAGGGT.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................ATGGATAGCCTTTACAAAGAAGTGC....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ATCCGGTACCACACAGAGGGT.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
droSim2
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTACCACACAGAGGGTCTGGATAGCCTCTACAAGGAAGTGCCCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................AGGGTCTGGATAGCCTCT................1812.00220000000000000000
.........................................................................................................................................................................................................................................................................CCACACAGAGGGTCTGGATAGCCT..................2411.00101000000000000000
.............................................................................................................................................................................................................................................................................ACAGAGGGTCTGGATAGC....................1811.00101000000000000000
..........................................................................................................................................................................................................................................................................CACACAGAGGGTCTGGATAGCCT..................2311.00101000000000000000
droSec2
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCCGGTATCACACAGAGGGTCTGGATAGCCTCTACAAGGAAGTGCCCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................ATCACACAGAGGGTCTGGATAGCCT..................2512.0020020
............................................................................................................................................................................................................................................................................CACAGAGGGTCTGGATAGCCT..................2111.0010100
........................................................................................................................................................................................................................................................................ATCACACAGAGGGTCTGG.........................1811.0010010
....................................................................................................................................................................................................................................................................................GTCTGGATAGCCTCTACAAGGAAGT......2511.0010100
droYak3
ACT--------------------------------------------------------------------------------------------------------------------------------------------AACTGAGTA------TCGGGTATCAG---ATAGTCGGGG----------AACTCGACTATAACGTTCTCTCTTGTTT-TTTTATCAATTAA----------------------------------------------------------------------TTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..T--------------------------------------------------------------------------------------------------------------------------------------------AACTGAGTA------TCGGGTATCAG---ATAGTC.................................................................................................................................2720.50100100000000
..................................................................................................................................................................................................CTCGACTATAACGTTCTCTCTTGTTT-TTT...................................................................................2960.17101000000000
..................................................................................................................................................................................................CTCGACTATAACGTTCTCTCTTGTTT-T.....................................................................................27190.16301200000000
..................................................................................................................................................................................................CTCGACTATAACGTTCTCTCTTGT.........................................................................................24200.15303000000000
..................................................................................................................................................................................................CTCGACTATAACGTTCTCTCTTGTTT-......................................................................................26200.15301200000000
..................................................................................................................................................................................................CTCGACTATAACGTTCTCTCTTGTT........................................................................................25200.10201100000000
..............................................................................................................................................................TCGGGTATCAG---ATAGTCGGGG----------AACT...............................................................................................................25200.10201100000000
....................................................................................................................................................................................................CGACTATAACGTTCTCTCTTG..........................................................................................21200.05101000000000
...................................................................................................................................................................................................TCGACTATAACGTTCTCTCTTG..........................................................................................22200.05101000000000
..............................................................................................................................................................TCGGGTATCAG---ATAGTCGGGG----------AACTC..............................................................................................................26200.05100100000000
.................................................................................................................................................................................CGGGG----------AACTCGACTATAACGTT..................................................................................................22200.05100000010000
.......................................................................................................................................................A------TCGGGTATCAG---ATAGTCGGGG----------A..................................................................................................................23200.05101000000000
droEre2
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCAAGTACCACACAGAGGGTCTGGATAGCCTCTACAAGGAAGTGCCGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................GGGTCTGGATAGCCTCTACA.............2011.0011000000
.................................................................................................................................................................................................................................................................ATCAAGTACCACACAGAGGGT.............................2111.0011000000
..................................................................................................................................................................................................................................................................................GGGTCTGGATAGCCTCTACAAGG..........2311.0011000000
............................................................................................................................................................................................................................................................................CACAGAGGGTCTGGATAGCCTCTACA.............2611.0011000000

Generated: 05/18/2015 at 04:35 AM