ID:

dps_240

 Coordinate:

Unknown_group_37:25734-25809 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.2 -27.1 -27.1

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dps_240  Unknown_group_37:25786-25809 +
  2. Unknown_singleton_3344:412-435 -
  3. Unknown_singleton_3345:794-817 -
star
  1. dps_240  Unknown_group_37:25740-25765 +
  2. Unknown_singleton_1676:66-91 -
  3. Unknown_singleton_2212:1806-1831 -
  4. Unknown_singleton_2212:4876-4901 -
  5. Unknown_singleton_3344:456-481 -
  6. Unknown_singleton_3345:838-863 -

Sense Strand Reads

GTCCGGTAGTAGTTTTGCCGCTCGGTTCTTGTGGCTGGCCCGTGCCATCCTCTCTTTGAATTTTCGGGCCGACATGTTGAATTTCTCTTCTTTATTTTCCATTTGTCTGAAAAGGTAGAGAGAGGGCATCGTTATTGTCTTTGCTTCCTCTATTTTTGCAGGTTTTAGTTGTGAGA
*****************************************(((((...(((((((((..(((((((((....(((..((((...........))))..)))..)))))))))..))))))))))))))............*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 SRR902010
ovaries
 V112
male body		 GSM444067
head
 M059
embryo
 GSM343916
embryo
 SRR902012
CNS imaginal disc
 M062
head
......................................................................................................TTGTCTGAAAAGGTAGAGAGAGGG.................................................. 24 0 3 18.67 56 23 17 11 4 1 0 0 0 0
......................................................................................................TTGTCTGAAAAGGTAGAGAGAGG................................................... 23 0 3 17.67 53 14 31 0 7 1 0 0 0 0
......................................................................................................TTGTCTGAAAAGGTAGAGAGAGGGC................................................. 25 0 3 17.33 52 42 5 5 0 0 0 0 0 0
.....................................................................................................TTTGTCTGAAAAGGTAGAGAGAGGGC................................................. 26 0 3 9.00 27 26 0 0 0 0 1 0 0 0
.....................................................................................................TTTGTCTGAAAAGGTAGAGAGAGG................................................... 24 0 3 8.00 24 8 14 0 2 0 0 0 0 0
.......................................................................................................TGTCTGAAAAGGTAGAGAGAGG................................................... 22 0 10 4.80 48 1 45 0 1 0 0 1 0 0
.....................................................................................................TTTGTCTGAAAAGGTAGAGAGAGGG.................................................. 25 0 3 4.00 12 9 3 0 0 0 0 0 0 0
............................................................................................TATTTTCCATTTGTCTGAAAAGGTAG.......................................................... 26 0 3 3.33 10 7 0 3 0 0 0 0 0 0
.......................................................................................................TGTCTGAAAAGGTAGAGAGAGGG.................................................. 23 0 10 3.00 30 1 25 2 1 0 0 1 0 0
......................................................................................................TTGTCTGAAAAGGTAGATAGAGGGC................................................. 25 1 3 2.67 8 8 0 0 0 0 0 0 0 0
.......................................................................................................TGTCTGAAAAGGTAGAGAGAGGGC................................................. 24 0 10 2.00 20 2 8 8 1 0 1 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGGGCAT............................................... 22 0 9 1.67 15 3 1 11 0 0 0 0 0 0
......................................................................................................TTGTCTGAAAAGGTAGAGAGAG.................................................... 22 0 3 1.67 5 0 5 0 0 0 0 0 0 0
...........................................................................................TTATTTTCCATTTGTCTGAAAAGG............................................................. 24 0 3 1.33 4 3 0 1 0 0 0 0 0 0
........................................................................................................GTCTGAAAAGGTAGAGAGAGGGC................................................. 23 0 10 1.20 12 2 8 2 0 0 0 0 0 0
........................................................................................................GTCTGAAAAGGTAGAGAGAGG................................................... 21 0 10 1.10 11 0 10 0 0 0 0 1 0 0
......................................................................................................TTGTCTGAAAAGGTAGAGAGTGGG.................................................. 24 1 3 1.00 3 0 0 0 3 0 0 0 0 0
.....................................................................................................TTTGTCTGAAAAGGTAGATAGAGGG.................................................. 25 1 3 1.00 3 3 0 0 0 0 0 0 0 0
......................................................................................................TTGTCTGAAAAGGTAGAGAGAGGGCA................................................ 26 0 3 1.00 3 3 0 0 0 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGGGC................................................. 20 0 10 0.90 9 0 3 6 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGAGAGAGGGC................................................. 22 0 10 0.90 9 4 1 3 1 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGGGCATCGT............................................ 25 0 9 0.89 8 0 2 6 0 0 0 0 0 0
.......................................................................................................TGTCTGAAAAGGTAGAGAGA..................................................... 20 0 10 0.70 7 0 7 0 0 0 0 0 0 0
.....................................................................................................TTTGTCTGAAAAGGTAGAGAGAG.................................................... 23 0 3 0.67 2 0 2 0 0 0 0 0 0 0
.....................................................................................................TTTGTCTGAAAAGGTAGAGAGA..................................................... 22 0 3 0.67 2 0 2 0 0 0 0 0 0 0
....................................................................................................ATTTGTCTGAAAAGGTAGAGAGAG.................................................... 24 0 3 0.67 2 1 1 0 0 0 0 0 0 0
.....................................................................................................TTTGTCTGAAAAGGTAGAGAGAGGGCA................................................ 27 0 3 0.67 2 1 1 0 0 0 0 0 0 0
.....................................................................................................TTTGTCTGAAAAGGTAGAGAGAGGGCAT............................................... 28 0 3 0.67 2 2 0 0 0 0 0 0 0 0
......................................................................................................TTGTCTGAAAAGGTAGAGAGA..................................................... 21 0 3 0.67 2 0 2 0 0 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGGG.................................................. 19 0 10 0.60 6 1 5 0 0 0 0 0 0 0
........................................................................................................GTCTGAAAAGGTAGAGAGAGGG.................................................. 22 0 10 0.60 6 0 6 0 0 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGGGCATC.............................................. 23 0 9 0.56 5 2 2 1 0 0 0 0 0 0
......TAGTAGTTTTGCCGCTCGGTTCTTG................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................TGAATTTTCGGGCCGACATGTTGAAT.............................................................................................. 26 0 6 0.50 3 0 1 2 0 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGGGCATCG............................................. 24 0 9 0.44 4 0 0 4 0 0 0 0 0 0
.......................................................................................................TGTCTGAAAAGGTAGAGAGAG.................................................... 21 0 10 0.40 4 0 4 0 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGAGAGAGG................................................... 20 0 10 0.40 4 0 4 0 0 0 0 0 0 0
............................................................................................TATTTTCCATTTGTCTGAAAAGGTA........................................................... 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0
.......................................................................................................TGTCTGAAAAGGTAGAGAGAGGGCAT............................................... 26 0 9 0.33 3 0 0 3 0 0 0 0 0 0
...........................................................................................TTATTTTCCATTTGTCTGAAAAGGTAG.......................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TGTCTTTGCTTCCTCTATTTTTGCAGG.............. 27 0 3 0.33 1 0 1 0 0 0 0 0 0 0
.....................................................................................................ATCGTCTGAAAAGGTAGAGAGAGG................................................... 24 2 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................TTGTCTGAAAGGGTAGAGAGAGG................................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................TTGTCTGAAAAGGTAGAGAGAT.................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0
....................................................................................................ATTTGTCTGAAAAGGTAGAGAGAGGG.................................................. 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................TATTTTCCATTTGTCTGAAAAGG............................................................. 23 0 3 0.33 1 0 1 0 0 0 0 0 0 0
.....................................................................................................TTTGTCTGAAAAGGTAGAGAGAGGT.................................................. 25 1 3 0.33 1 0 1 0 0 0 0 0 0 0
...............................................................................................TTTCCATTTGTCTGAAAAGGTAGAGA....................................................... 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................TTGTCTGAAAAGGTAGAGAGAGGGCAT............................................... 27 0 3 0.33 1 0 1 0 0 0 0 0 0 0
....................................................................................................GTTTGTCTGAAAAGGTAGAGAGAGG................................................... 25 1 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................TTGTCTGAAAAGGTAGAGAGAGGAC................................................. 25 1 3 0.33 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................TATTGTCTTTGCTTCCTCTATTTT.................... 24 0 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................TTGTCTGAAAAGGTAGATAGAGGG.................................................. 24 1 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................................ATTTGTCTGAAAAGGTAGAGAG...................................................... 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................TATTTTCCATTTGTCTGAAAAGGT............................................................ 24 0 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................TTGTCTGAAAAGGAAGAGAGAGG................................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0 0
....................................................................................................ATTTGTCTGAAAAGGTAGAGAGAGG................................................... 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGAGAGAGGG.................................................. 21 0 10 0.30 3 0 2 1 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGATAGAGGGC................................................. 22 1 10 0.30 3 3 0 0 0 0 0 0 0 0
.......................................................................................................TGTCTGAAAAGGTAGATAGAGGGC................................................. 24 1 10 0.30 3 3 0 0 0 0 0 0 0 0
.TCCGGTAGTAGTTTTGCCGCTCGG....................................................................................................................................................... 24 0 4 0.25 1 0 1 0 0 0 0 0 0 0
...................................................................GCCGACATGTTGAATTTCTCTTCTT.................................................................................... 25 0 8 0.25 2 2 0 0 0 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGTGGGCATCGTTAT......................................... 28 1 9 0.22 2 2 0 0 0 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGGGCA................................................ 21 0 9 0.22 2 1 0 1 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGAGAGAGGGCAT............................................... 24 0 9 0.22 2 0 0 2 0 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGA................................................... 18 1 10 0.20 2 0 2 0 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGAGAGAG.................................................... 19 0 10 0.20 2 0 2 0 0 0 0 0 0 0
........................................................................................................GTCTGAAAAGGTAGAGAGAG.................................................... 20 0 10 0.20 2 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................TATTTTGCAGGTTTTAGTTGTGA.. 23 2 5 0.20 1 1 0 0 0 0 0 0 0 0
........................................................TGAATTTTCGGGCCGATA...................................................................................................... 18 1 6 0.17 1 0 1 0 0 0 0 0 0 0
..................................................TCTCTTTGAATTTTCGGGCCGACA...................................................................................................... 24 0 6 0.17 1 0 1 0 0 0 0 0 0 0
........................................................TGAATTTTCGGGCCGACATGTTGAATT............................................................................................. 27 0 6 0.17 1 0 0 0 1 0 0 0 0 0
......................................................TTTGAATTTTCGGGCCGAC....................................................................................................... 19 0 6 0.17 1 1 0 0 0 0 0 0 0 0
.........................................................GAATTTTCGGGCCGACATGTTGAATT............................................................................................. 26 0 6 0.17 1 0 1 0 0 0 0 0 0 0
......................................................TTTGAATTTTCGGGCCGATATGT................................................................................................... 23 1 6 0.17 1 0 1 0 0 0 0 0 0 0
........................................................................................................................AGACGGCATCGTCATTGTCTG................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0
..........................................................................................................CTGAAAAGGTAGAGAGAGGGCAT............................................... 23 0 9 0.11 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGAGAGAGGGCATC.............................................. 25 0 9 0.11 1 0 1 0 0 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGGGCATCGTTA.......................................... 27 0 9 0.11 1 0 0 1 0 0 0 0 0 0
.......................................................................................................TGTCTGAAAAGGTAGAGAGAGGGCA................................................ 25 0 9 0.11 1 0 1 0 0 0 0 0 0 0
..........................................................................................................CTGAAAAGGTAGAGAGAGGGCATCG............................................. 25 0 9 0.11 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGAGAGTGGGCATCGT............................................ 27 1 9 0.11 1 1 0 0 0 0 0 0 0 0
........................................................................................................GTCTGAAAAGGTAGAGAGAGGGCAT............................................... 25 0 9 0.11 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGAGAGAGGGCA................................................ 23 0 9 0.11 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGAGAGAGGGCATCGT............................................ 27 0 9 0.11 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TCTGAAAAGGTAGATAGAGGGCATCG............................................. 26 1 9 0.11 1 1 0 0 0 0 0 0 0 0
..........................................................................................................CTGAAAAGGTAGAGAGAGG................................................... 19 0 10 0.10 1 0 1 0 0 0 0 0 0 0
.......................................................................................................TGTCTGAAAGGGTAGAGAGAGGG.................................................. 23 1 10 0.10 1 0 1 0 0 0 0 0 0 0
.......................................................................................................TGACTGAAAAGGTAGAGAGAGG................................................... 22 1 10 0.10 1 0 0 0 0 0 0 1 0 0
.........................................................................................................TCTAAAAAGGTAGATAGAGGGC................................................. 22 2 10 0.10 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGG................................................... 18 0 10 0.10 1 0 1 0 0 0 0 0 0 0
...........................................................................................................TGATAAGGTAGAGAGAGGGC................................................. 20 1 10 0.10 1 0 0 0 0 0 1 0 0 0
.........................................................................................................TCTGAAAAGGTAGAGAGAGAA.................................................. 21 2 10 0.10 1 0 1 0 0 0 0 0 0 0
...........................................................................................................TGAAAAAGTAGAGAGAGGG.................................................. 19 1 10 0.10 1 1 0 0 0 0 0 0 0 0
...................GATCGGGTCTTATGGCTGG.......................................................................................................................................... 19 3 20 0.10 2 0 1 0 1 0 0 0 0 0
.......................................................................................................TGTCTGAAAAGGTAGAGAGAGGA.................................................. 23 1 10 0.10 1 0 1 0 0 0 0 0 0 0
............................................................................................................GAAAAGGTAGAGAGAGGGCGT............................................... 21 1 10 0.10 1 0 1 0 0 0 0 0 0 0
.....................TCGGGTCTTATGGCTGGC......................................................................................................................................... 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0
.......................................................................................................TGTCTGAAAAGGTAGAGAGT..................................................... 20 1 10 0.10 1 0 1 0 0 0 0 0 0 0
...........................................................................................................TGAAAAGGTAGAGAGAGGGA................................................. 20 1 10 0.10 1 0 0 0 0 0 0 1 0 0
.......................................................................................................TGTCTGAAAAGGTAGAGATAG.................................................... 21 1 10 0.10 1 0 1 0 0 0 0 0 0 0
............................................................................................................GAATAGGTAGAGAGAGGG.................................................. 18 1 11 0.09 1 0 0 0 0 0 1 0 0 0
......TAGTAGTTTTGCCGCTCGGTT..................................................................................................................................................... 21 0 11 0.09 1 0 1 0 0 0 0 0 0 0
.......................................................................................................TTTCTGAAAAGCTAGAGAGAGGGC................................................. 24 2 15 0.07 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CAGGCCATCATCAAAACGGCGAGCCAAGAACACCGACCGGGCACGGTAGGAGAGAAACTTAAAAGCCCGGCTGTACAACTTAAAGAGAAGAAATAAAAGGTAAACAGACTTTTCCATCTCTCTCCCGTAGCAATAACAGAAACGAAGGAGATAAAAACGTCCAAAATCAACACTCT
***********************************(((((...(((((((((..(((((((((....(((..((((...........))))..)))..)))))))))..))))))))))))))............***************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
...............................................AGGAGAGAAACTTAAAAGCCCGGCT........................................................................................................ 25 0 6 1.33 8 0 4 4 0
......................................GGGCACGGTAGGAGAGAAACTT.................................................................................................................... 22 0 1 1.00 1 1 0 0 0
.............................................GTAGGAGAGAAACTTAAAAGCCCGGCT........................................................................................................ 27 0 6 1.00 6 0 4 2 0
.................................CGACCGGGCACGGTAGGAGAGAAAC...................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.......................CCAAGAACACCGACCGGGCACGGT................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
................................................GGAGAGAAACTTAAAAGCCCGGCTGT...................................................................................................... 26 0 6 0.83 5 1 0 4 0
...............................................AGGAGAGAAACTTAAAAGGCCGGCT........................................................................................................ 25 1 6 0.83 5 0 5 0 0
......................................................................................GAAGAAATAAAAGGTAAACAAACTTT................................................................ 26 1 3 0.67 2 0 0 2 0
...................................................................................................................................................GAGATAAAAACGTCCAAAATCAACACT.. 27 0 5 0.60 3 2 0 1 0
.................................................................................................................................................AGGAGATAAAAACGTCCAAAATCAACA.... 27 0 5 0.60 3 0 3 0 0
......................................................................................................................................................ATAAAAACGTCCAAAATCAACACT.. 24 0 5 0.60 3 3 0 0 0
................................................GGAGAGAAACTTAAAAGCCCGGCTAT...................................................................................................... 26 1 6 0.50 3 0 3 0 0
...........................................CGGTAGGAGAGAAACTTAAAAGCCCGGCT........................................................................................................ 29 0 4 0.50 2 0 0 2 0
..................................................................................................................................................GGAGATAAAAACGTCCAAAATCAACACT.. 28 0 5 0.40 2 1 0 0 1
..............................................TAGGAGAGAAACTTAAAAGCCCGGCT........................................................................................................ 26 0 6 0.33 2 0 2 0 0
......................................................................................GAAGAAATAAAAGGTAAACAGACTTT................................................................ 26 0 3 0.33 1 0 0 1 0
..................................................AGAGAAACTTAAAAGGCCGGCTGT...................................................................................................... 24 1 6 0.33 2 0 2 0 0
..............................................................................CTTAAAGAGAAGAAATAAAAGGTA.......................................................................... 24 0 9 0.33 3 0 3 0 0
...................................................................................AGAGAAGAAATAAAAGGTAAACAGACT.................................................................. 27 0 3 0.33 1 0 0 1 0
...........................................CGGTAGGAGAGAAACTTAAAAGC.............................................................................................................. 23 0 4 0.25 1 1 0 0 0
.........................................................................TACAACTTAAAGAGAAGAAATAAAAGGT........................................................................... 28 0 8 0.25 2 0 0 2 0
................................................................GGCCGGCTGTACAACTTAAAGAG......................................................................................... 23 1 8 0.25 2 0 2 0 0
.....................................................................................................................................................GATAAAAACGTCCAAAATCAACACT.. 25 0 5 0.20 1 1 0 0 0
......................................................................................................................................................ATAAAAGCGTCCAAAATCAACACT.. 24 1 5 0.20 1 1 0 0 0
.....................................................GAAACTTAAAAGCCCGGATGTACAACT................................................................................................ 27 1 6 0.17 1 1 0 0 0
.....................................................GAAACTTAAAAGCCCGGCTGTACAACT................................................................................................ 27 0 6 0.17 1 1 0 0 0
................................................GGAGAGAAACTTAAAAGCCCGGCT........................................................................................................ 24 0 6 0.17 1 0 0 1 0
...........................................................TAAAAGCCCGGCTGTACAACTTAA............................................................................................. 24 0 6 0.17 1 1 0 0 0
..........................................................TTAAAAGGCCGGCTGTACAACTT............................................................................................... 23 1 6 0.17 1 1 0 0 0
...............................................................AGCCCGGCTGTACAACTTAAAGAG......................................................................................... 24 0 6 0.17 1 1 0 0 0
....................................................AGAAACTTAAAAGGCCGGCTGTACA................................................................................................... 25 1 6 0.17 1 0 1 0 0
..............................................................AAGCCCGGCTGTACAACTTAAAGAG......................................................................................... 25 0 6 0.17 1 1 0 0 0
..............................................AAGGAGAGAAACTTAAAAGCCCGGCTG....................................................................................................... 27 1 6 0.17 1 1 0 0 0
....................................................AGAAACTTAAAAGCCCGGCTGTACAACT................................................................................................ 28 0 6 0.17 1 0 0 1 0
...............................................AGGAGAGAAACTTAAAAGCCCGGCTAT...................................................................................................... 27 1 6 0.17 1 0 1 0 0
....................................................................GGCTGTACAACTTAAAGAG......................................................................................... 19 0 8 0.13 1 1 0 0 0
.................................................................CCCGGCTGTACAACTTAAAGAG......................................................................................... 22 0 8 0.13 1 1 0 0 0
..................................................................CCGGCTGTACAACTTAAAGAG......................................................................................... 21 0 8 0.13 1 1 0 0 0
................................................................GCCCGGCTGTACAACTTAAAGAG......................................................................................... 23 0 8 0.13 1 1 0 0 0
..........................................................................ACAACTTAAAGAGAAGAAATAAAAGGT........................................................................... 27 0 8 0.13 1 0 0 1 0
...............................................................................TTAAAGAGAAGAAATAAAAGGTA.......................................................................... 23 0 9 0.11 1 1 0 0 0
.................................................................................................................CCATCTCTCTCCCGTAGCAAT.......................................... 21 0 9 0.11 1 1 0 0 0
............................................................................................................CTTTTCCATCTCTCTCCCGTAGCAAT.......................................... 26 0 9 0.11 1 1 0 0 0
...............................................................................................................TTCCATCTCTCTCCCGTAGCAATAAC....................................... 26 0 9 0.11 1 1 0 0 0
...................................................................................AAAGAAGAAATAAAAGGTGAA........................................................................ 21 2 10 0.10 1 1 0 0 0
............................................GATAGGAGGGAAACGTAAAAG............................................................................................................... 21 3 13 0.08 1 1 0 0 0
....................................................................................................................TGCATCTCCCGTAGCAATA......................................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_37:25684-25859 + dps_240 GTCCGGTAGTAGTTT------------------------------------------------------TGCCGCTCGGTTCTTGTGGCTGGCCCGTGC------CATCCTCTCTTTGAA----TTTTCGGG------CCGA---CA-TGTTG------------------A-ATTTCTCTTCTTTATTTTCCATTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCGTTATTGTCTTTGCTTCCT---------------------------------CTATT-T-------TTGC----AGGTTTTAGT-------TGTGAGA
droPer2 scaffold_4342:153-328 + GTCCGGTAGTAGTTT------------------------------------------------------TGTCGCTCGGTTCTTGTGGCTGGCCCGTGC------CATCCTCTCTTTGAA----TTTTCGGG------CCGA---CA-TGTTG------------------A-ATTTCTCTTCTTTATTTTCCATTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCGTTATTGTCTTTGCTTCCT---------------------------------CTATT-T-------TTGC----AGGTTTTAGT-------TGTGAGA
droWil2 scf2_1100000000183:986-1161 - ATCTTTTCTTCCT---------------------------------------------------------------TGATTTATGTTTATGGCCCGT---------------------------------------------------T-CCT------------------C-A----------TCTTATTACTTTAC-TCGTTTAATTTACCTGTTTCCTTTTTTTTTTTATTTTGGTCTCGCCGAATCTGGTTC--CACCGCATCACA-------------------------------------------TGTTACTTGTTGTTCT-----GTGT-----------------------CTATATCCTCT-G-----------TTTGTTGTTTGAGC-------TGGCTAA
droVir3 scaffold_13185:230-281 + TCGTCTTTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGCTCGCC---------------------------------GTCTT-T-------CTGTAGAATGGTTTCAGT-------TGTGAGA
droMoj3 scaffold_6100:14270-14370 - ATTTTGTATTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTTTTTTTT-------TTTTTGGA--------------------------------A-----------------------------ACA-AA----------AAC------------A---AAA----CAGCTCTATTGCTCACCC----------------------------------GTGCCTCCT-C-----------TCCACGGCTTGAGA-------TCCGCCA
droGri2 scaffold_15076:3334-3403 + TTTATTTTC-------------------------------------------------------------------------------------------------------CTCCTTT----------------------------------------------------------------------------TTA-TGTA------------------------------------G-----------------------------GGGAAG----------AA--------------------A-----AAAATGTGACGGT--------------------------------------------CG-T-----------TGTGCGGATTCAGG-------TCGCTCA
droAna3 scaffold_12927:8771-8917 - CTCCGTTTGTTTGG----------------------------------------------------------CATTCGG--------------------CCGTTTCT--TTCCCCCTTTTTTTG----TGTGTTGACATTATTGGTGT-GTTGTGTTTTTTTTTCC-------------------TTTTCACCCTTTT-TCCG---------------------------------------------------------------------------------------------------CCATA----C--------GT---CTGT-----GATGCCGAT-----------------------TCCTCC-A-----------CCTGGGCTTTTAGC-------TCACTTA
droBip1 scf7180000395164:22375-22472 - TTCCTCCTTTTCGGT-----------------------------------------------------------------TCCCCTTTCTTGTGC--------------------------------------------------GG-G-CTT------------------G-ATATTTTCGTTTTATTCTTCC--TT-TGCA------------------------------------G-----------------------------GTG-AC-------------------------------------------------------------------------------------------TCCATA-T-----------CTTGGCACTTTAAC-------TCACTCA
droKik1 scf7180000301419:665-831 + CTCTGCTGCTACTGC------------------------------------------------------------------------------------------------TACTCTGCTCGTG----GGTCTTAGCGTCGAATGATC-GCTAAGCTTTCTCCGCCGTCTGT-GTG--TCTTCGTGATCATCCAGTCG-TCTGGGAA-------------------------------------------------------------------------------C--------------------CAGG-------------------------------TTCTGGGTCTCTGGCTCGTTGACTGCTTCCTTCAAATCTCTGA----GGGCTGCCGT-------TCGGTGT
droFic1 scf7180000452235:25206-25362 + GCCCGGTATTTTG----------------------------------------------------------CCGCTGAATT--------------------------------------------------------------------CTTGAA-TTTGTTCTCCATCTGTAAT---TTTTTGGAGATTTG-----T-TTATGT---------------------------------------CGGATCTCGTTTTCCTTTTTATGACT---AG----------CT-------------ACGTTTG----T--------GA---CTAT-----GTTGCTAAC---------T-------ACGGCGTTCCCT-T-----------TATATGGTTTAAGT-------TCGCTAA
droEle1 scf7180000488778:17461-17652 + GTTAGCCGGTAATGG---------------------TGTCTACGGCTTTTTGAACGCTACCTGTCCCGCTCTTGCTCTC--------------------CTG------------ATTGTG----TGTGTCTG------TGGG---TG-TGCTT------------------G-ACCGTTTATCGTCCTTCCCCTTTCT-TCGGTTAGGGTA--------------------------------------------------------------CATTGCTCCTCCGAT------------A---GGA----CGGATTTGTTGTGACTGCTCC----------------------------------TCCTTA-T-----------TTTGCGGTTTTAAC-------TGGCTTA
droRho1 scf7180000761696:1891-2076 - GGCTCCGAGTATAAT------------------------------------------------------TAATCTTCGCCGCTGCTGGTTGAGCCTTTG------GAGGTTCTCCCGGTA----CTTGGAGA------GCGA---GT-TTTTAAG-TTT------------------G---------TTGTTCA--TT-CTGAAAAATGTGCGTAT------------------------------------------------------------AGTTTTAGCTTGTTGTTTTTGGCGTTGCTCA----T--------GT---TTGT-----TAGT-----------------------CGAGGATTTCT-A-----------CATGGGGTTTTAGT-------TCGTTTA
droBia1 scf7180000301325:21509-21692 - CGTTGGTTTCTCTGC---------------------------------------------------------TGCTCTT--------------------CTGTTGCT--GTTGTTCTGCTACGG----GTTTTTAGCGTCAATCGATC-GCTAAACTTGCTCCGCCATCTGA-ATG--TCTTCGTTGTCGTCCAGTCG-TCTGGGTA-------------------------------------------------------------------------------C--------------------CAGA-------------------------------TTCTGGGTTTTTGGCTCGTTGACTGCTTCCTTCAAATCTCTAA----GGGATGCCGT-------TCTGCGT
droTak1 scf7180000412469:29801-29905 - TGTATTTTCGG--GC-------------------CGTGTTT----------------------------CCTCGCTCTGTTCCATCAGCTG--------------------------------------------------------------------------------T-GCT--TCGT----------------------------------------------------------------------------------------------CGTTCTCGCTTGCT-----------------------------------TTGTCC-----------------------------------GCAGTT-C-----------CTTGCTGTTTTAGATCGCTGATGTGCAT
droEug1 scf7180000407371:17231-17399 + CCGGTA--TTACTTTTGCCTTCTTTGCGGCCCGCTGTAGTT----------------------------GGGCGC--------------------------------TGTGCTCCCTGAA----CCGGTTTT------TTGA---AC-TCTCGAA-TCT------------------------------GTCCATTTTTTCTGTAAC--------------------------------G-----------------------------ATGAGA----------GT--------------------GGAA-------------------------------GTTTGGTTACTAGGGTCATTGGGATTTGCT-TTGA---TCGGG----TAAGTGTTAT-------TTTGATA
dm3 chr2R:761946-761966 - TTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTTCAGA-------TCGCTGA
droSim2 node_73189:2273-2331 + GGAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCTTCAGA-------TCACTGA
droSec2 scaffold_126:17748-17894 - GTGTTGTTGATC----------------------------------------------------------------TGATCCGTATCGATACCTTGTAT------CGTCTTCCCCC--------TTTTCACC------CCAA---CG-TTTTG------------------T-GTTGTTTTTCTTTTGTTTTTGTTTA-TTCCTCGAAGT---------------------------------------------------------------------------------------------------------CTC------GTGGCCCG----------------------------CCGGCGCTCGCG-C-----------TTCCCGGCTTCAGA-------TCGCTGA
droYak3 v2_chrUn_008:245680-245814 + CCTCTTTTTTAGTGT-----------------------------------------------------------------GCCCGTTGGTGGGC---------------------------------------------------CG-TCTTG------------------A-GTTCCTTTTTCCCGCTTTC-----C-TGATCTGATG----------------------------------------------------------------TATCGTTCTCCTGTT------------C---GAAC-----CCTCTATGATGGTTGTCC-----------------------------------GTGCTT-A-----------TGTGTGGTTTGGTGTC-----TCCGATA
droEre2 scaffold_4784:23094273-23094280 + TTGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTCCGGTAGTAGTTT------------------------------------------------------TGCCGCTCGGTTCTTGTGGCTGGCCCGTGC------CATCCTCTCTTTGAA----TTTTCGGG------CCGA---CA-TGTTG------------------A-ATTTCTCTTCTTTATTTTCCATTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCGTTATTGTCTTTGCTTCCT---------------------------------CTATT-T-------TTGC----AGGTTTTAGT-------TGTGAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................TTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................24318.67560170001411230
...................................................................................................................................................................................................TTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................23317.6753031000170140
...................................................................................................................................................................................................TTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----C.....................................................................................................25317.335205000005420
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----C.....................................................................................................2639.002700100000260
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................2438.002401400002080
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................22104.804804500101010
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................2534.00120300000090
.........................................................................................................................................................................................TATTTTCCATTTG-TCTGAAAAGGTA--------------------------------------------------------------G...........................................................................................................................................2633.33100000000370
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................23103.003002500101210
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----C.....................................................................................................24102.00200810001820
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CAT...................................................................................................2291.671501000001130
...................................................................................................................................................................................................TTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---G............................................................................................................2231.6750500000000
........................................................................................................................................................................................TTATTTTCCATTTG-TCTGAAAAGG............................................................................................................................................................................................................2431.3340000000130
.....................................................................................................................................................................................................G-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----C.....................................................................................................23101.20120800000220
.....................................................................................................................................................................................................G-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................21101.101101000100000
...................................................................................................................................................................................................TTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CA....................................................................................................2631.0030000000030
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----C.....................................................................................................20100.9090300000600
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----C.....................................................................................................22100.9090100001340
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCGT................................................................................................2590.8980200000600
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---.............................................................................................................20100.7070700000000
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---G............................................................................................................2330.6720200000000
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---.............................................................................................................2230.6720200000000
.................................................................................................................................................................................................ATTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---G............................................................................................................2430.6720100000010
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CA....................................................................................................2730.6720100000010
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CAT...................................................................................................2830.6720000000020
...................................................................................................................................................................................................TTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---.............................................................................................................2130.6720200000000
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................19100.6060500000010
.....................................................................................................................................................................................................G-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................22100.6060600000000
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATC..................................................................................................2390.5650200000120
......TAGTAGTTT------------------------------------------------------TGCCGCTCGGTTCTTG........................................................................................................................................................................................................................................................................................................................................2520.5010000000010
....................................................................................................................TGAA----TTTTCGGG------CCGA---CA-TGTTG------------------A-AT..............................................................................................................................................................................................................................................2660.5030100000200
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCG.................................................................................................2490.4440000000400
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---G............................................................................................................21100.4040400000000
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................20100.4040400000000
.........................................................................................................................................................................................TATTTTCCATTTG-TCTGAAAAGGTA--------------------------------------------------------------............................................................................................................................................2530.3310000000100
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CAT...................................................................................................2690.3330000000300
........................................................................................................................................................................................TTATTTTCCATTTG-TCTGAAAAGGTA--------------------------------------------------------------G...........................................................................................................................................2730.3310000000010
................................................................................................................................................................................................................................................................................................................................TGTCTTTGCTTCCT---------------------------------CTATT-T-------TTGC----AGG.....................2730.3310100000000
...................................................................................................................................................................................................TTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---T............................................................................................................2230.3310100000000
.................................................................................................................................................................................................ATTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................2630.3310000000010
.........................................................................................................................................................................................TATTTTCCATTTG-TCTGAAAAGG............................................................................................................................................................................................................2330.3310100000000
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGT----......................................................................................................2530.3310100000000
............................................................................................................................................................................................TTTCCATTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GA..............................................................................................................................2630.3310100000000
...................................................................................................................................................................................................TTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CAT...................................................................................................2730.3310100000000
.............................................................................................................................................................................................................................................................................................................................TATTGTCTTTGCTTCCT---------------------------------CTATT-T-------T...............................2430.3310100000000
.................................................................................................................................................................................................ATTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------.................................................................................................................2230.3310000000010
.........................................................................................................................................................................................TATTTTCCATTTG-TCTGAAAAGGT...........................................................................................................................................................................................................2430.3310100000000
.................................................................................................................................................................................................ATTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................2530.3310100000000
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................21100.3030200000100
.TCCGGTAGTAGTTT------------------------------------------------------TGCCGCTCGG..............................................................................................................................................................................................................................................................................................................................................2440.2510100000000
...................................................................................................................................G------CCGA---CA-TGTTG------------------A-ATTTCTCTTCTT....................................................................................................................................................................................................................................2580.2520000000020
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CA....................................................................................................2190.2220000000110
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CAT...................................................................................................2490.2220000000200
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GA...........................................................................................................18100.2020200000000
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---G............................................................................................................19100.2020200000000
.....................................................................................................................................................................................................G-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---G............................................................................................................20100.2020200000000
..............................................................................................................TCTCTTTGAA----TTTTCGGG------CCGA---CA-.........................................................................................................................................................................................................................................................................2460.1710100000000
....................................................................................................................TGAA----TTTTCGGG------CCGA---CA-TGTTG------------------A-ATT.............................................................................................................................................................................................................................................2760.1710000001000
..................................................................................................................TTTGAA----TTTTCGGG------CCGA---C...........................................................................................................................................................................................................................................................................1960.1710000000010
.....................................................................................................................GAA----TTTTCGGG------CCGA---CA-TGTTG------------------A-ATT.............................................................................................................................................................................................................................................2660.1710100000000
........................................................................................................................................................................................................CTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CAT...................................................................................................2390.1110100000000
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATC..................................................................................................2590.1110100000000
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCGTTA..............................................................................................2790.1110000000100
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CA....................................................................................................2590.1110100000000
........................................................................................................................................................................................................CTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCG.................................................................................................2590.1110100000000
.....................................................................................................................................................................................................G-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CAT...................................................................................................2590.1110000000100
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CA....................................................................................................2390.1110000000100
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCGT................................................................................................2790.1110000000100
........................................................................................................................................................................................................CTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................19100.1010100000000
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................18100.1010100000000
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GAA----......................................................................................................21100.1010100000000
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGA----......................................................................................................23100.1010100000000
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------T---.............................................................................................................20100.1010100000000
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----A.....................................................................................................20100.1010000100000
......TAGTAGTTT------------------------------------------------------TGCCGCTCGGTT............................................................................................................................................................................................................................................................................................................................................21110.0910100000000
droPer2
GTCCGGTAGTAGTTT------------------------------------------------------TGTCGCTCGGTTCTTGTGGCTGGCCCGTGC------CATCCTCTCTTTGAA----TTTTCGGG------CCGA---CA-TGTTG------------------A-ATTTCTCTTCTTTATTTTCCATTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCGTTATTGTCTTTGCTTCCT---------------------------------CTATT-T-------TTGC----AGGTTTTAGT-------TGTGAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................19105.60560100055
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................18101.90190000019
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................2481.50120000012
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----C.....................................................................................................20101.50150000015
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................22101.10110000011
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................2580.756000006
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................20100.707000007
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GT...........................................................................................................18100.404000004
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................21100.303000003
.....................................................................................................................................................................................................G-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................22100.303000003
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGT----......................................................................................................19100.303000003
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CA....................................................................................................21100.303010002
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CAT...................................................................................................22100.303020001
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---G............................................................................................................2380.252000002
...................................................................................................................................................................................................TTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................2380.252000002
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----C.....................................................................................................24100.202000002
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATC..................................................................................................23100.202000002
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GA...........................................................................................................18120.172000002
.................................................................................................................................................................................................ATTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................2580.131000001
...................................................................................................................................................................................................TTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---.............................................................................................................2180.131000001
..................................................................................................................TTTGAA----TTTTCGGG------CCGA---CA-TGTTG------------------A-AT..............................................................................................................................................................................................................................................2880.131000001
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---.............................................................................................................2280.131000001
..................................................................................................................................................................................................TTTG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----C.....................................................................................................2680.131000001
....................................................................................................................TGAA----TTTTCGGG------CCGA---CA-TGTT.....................................................................................................................................................................................................................................................................2290.111000001
....................................................................................................................TGAA----TTTTCGGG------CCGA---CA-TGT......................................................................................................................................................................................................................................................................2190.111000001
.....................................................................................................................................................................................................G-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GG...........................................................................................................21100.101000001
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGA----......................................................................................................19100.101000001
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CA....................................................................................................25100.101000001
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----C.....................................................................................................22100.101000001
.......................................................................................................................................................................................................TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---G............................................................................................................19100.101000001
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATT..................................................................................................23100.101000001
.........................................................................................................................................................................................................TGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCG.................................................................................................24100.101010000
....................................................................................................................................................................................................TG-TCTGAAAAGGTA--------------------------------------------------------------GA----------GAG------------A---GGG----......................................................................................................23100.101000001
.................................................................................................................................................................................................................TA--------------------------------------------------------------GA----------GAG------------A---GGG----CATCGTTA..............................................................................................19100.101010000
.............TT------------------------------------------------------TGTCGCTCGGTTCTTGTGGCTGG.................................................................................................................................................................................................................................................................................................................................25110.091010000
......TAGTAGTTT------------------------------------------------------TGTCGCTCGGTTCTT.........................................................................................................................................................................................................................................................................................................................................24110.091000001
...........................................................................TCGGTTCTTGTGGCTGGCCCGTGC------....................................................................................................................................................................................................................................................................................................................24110.091010000
......TAGTAGTTT------------------------------------------------------TGTCGCTCGGTTCTTGTGG.....................................................................................................................................................................................................................................................................................................................................28110.091010000
.TCCGGTAGTAGTTT------------------------------------------------------TGTCGCTCGGTTC...........................................................................................................................................................................................................................................................................................................................................27110.091010000
............TTT------------------------------------------------------TGTCGCTCGGTTCTTGTGGCTG..................................................................................................................................................................................................................................................................................................................................25110.091000001
...........................................................................TCGGTTCTTGTGGCTGGCCC..............................................................................................................................................................................................................................................................................................................................20110.091010000
.........TAGTTT------------------------------------------------------TGTCGCTCGGTTCTTGTGG.....................................................................................................................................................................................................................................................................................................................................25110.091000001
......TAGTAGTTT------------------------------------------------------TGTCGCTCGGTTCT..........................................................................................................................................................................................................................................................................................................................................23110.091000001
...........................................................................TCGGTTCTTGTGGCTGGCC...............................................................................................................................................................................................................................................................................................................................19120.081010000
droWil2
ATCTTTTCTTCCT---------------------------------------------------------------TGATTTATGTTTATGGCCCGT---------------------------------------------------T-CCT------------------C-A----------TCTTATTACTTTAC-TCGTTTAATTTACCTGTTTCCTTTTTTTTTTTATTTTGGTCTCGCCGAATCTGGTTC--CACCGCATCACA-------------------------------------------TGTTACTTGTTGTTCT-----GTGT-----------------------CTATATCCTCT-G-----------TTTGTTGTTTGAGC-------TGGCTAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.TCTTTTCTTCCT---------------------------------------------------------------TGATTTATGTTTAT...................................................................................................................................................................................................................................................................................................................................2620.50100010
.................................................................................................................................................................................................................................................CGCCGAATCTGGTTC--CACCGCATCACA-------------------------------------------....................................................................................................2770.29200020
..........................................................................................................................................................................................................................................................................................................................................................................TATATCCTCT-G-----------TTTGTTGTTTGAGC-------.......25120.17200020
.....................................................................................................................................................................................................................................................................................................................................TTCT-----GTGT-----------------------CTATATCCTCT-G-----------TTTGT.......................25130.15201010
..................................................................................................................................................................................................................................................GCCGAATCTGGTTC--CACCGCAT...................................................................................................................................................2270.14101000
.................................................................................................................................................................................................................................................CGCCGAATCTGGTTC--CACCGCATCACA-------------------------------------------TG..................................................................................................2970.14101000
................................................................................................................................................................................................................................................TCGCCGAATCTGGTTC--CACCGCATC..................................................................................................................................................2570.14101000
....................................................................................................................................................................................................................................................CGAATCTGGTTC--CACCGCATCACA-------------------------------------------TGT.................................................................................................2780.13101000
............................................................................................................................................................................................................................................................................................................................................................................TATCCTCT-G-----------TTTGTTGTTTGAGC-------TGG....26120.08100010
............................................................................................................................................................................................................................................................................................................................................................................TATCCTCT-G-----------TTTGTTGTTTGAGC-------TGGC...27120.08101000
...............................................................................................................................................................................................................................................................................................................................................TGT-----------------------CTATATCCTCT-G-----------TTTGTTGTTTGAGC-------.......29120.08101000
...............................................................................................................................................................................................................................................................................................................................TTGTTGTTCT-----GTGT-----------------------CTATATCCTCT-G-----------............................26120.08101000
..........................................................................................................................................................................................................................................................................................................................................................................TATATCCTCT-G-----------TTTGTTGTTTGAG...............24120.08100010
................................................................................................................................................................................................................................................................................................................................TGTTGTTCT-----GTGT-----------------------CTATATCCTCT-G-----------TTT.........................28120.08101000
..................................................................................................................................................................................................................................................................................................................................TTGTTCT-----GTGT-----------------------CTATATCCTCT-G-----------TTTG........................27120.08101000
........................................................................................................................................................................................................................................................................................................................................T-----GTGT-----------------------CTATATCCTCT-G-----------TTTGTTGTTC..................27130.08101000
.................................................................................................................................................................................................................................................................................................................................................T-----------------------CTATATCCTCT-G-----------TTTGTTGTTTGA................25130.08101000
........................................................................................................................................................................................................................................................................................................................................T-----GTGT-----------------------CTATATCCTCT-G-----------TTTGTTGTTTG.................28130.08101000
...................................................................................................................................................................................................................................................................................................................................TGTTCT-----GTGT-----------------------CTATATCCTCT-G-----------TTTGT.......................27130.08101000
...................................................................................................................................................................................................................................................................................................................................TGTTCT-----GTGT-----------------------CTATATCCTCT-G-----------TT..........................24140.07101000
droVir3
TCGTCTTTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGCTCGCC---------------------------------GTCTT-T-------CTGTAGAATGGTTTCAGT-------TGTGAGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................TAGAATGGTTTCAGT-------TGTGAGA2216.006000000000000100000000000002110001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TAGAATGGTTTCAGT-------TGTGAG.2113.003000000000000100000000001000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TAGAATGGTTTCAGT-------TGTGA..2012.002000000000000000000000001000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TT-T-------CTGTAGAATGGTTTCAGT-------TGTGA..2611.001000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CTGTAGAATGGTTTCAGT-------TGTGAG.2411.001000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GTAGAATGGTTTCAGT-------TGTGAG.2211.001000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................C---------------------------------GTCTT-T-------CTGTAGAATGGTT...................20200.153000000003000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................C---------------------------------GTCTT-T-------CTGTAGAATGGT....................19200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
ATTTTGTATTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTTTTTTTT-------TTTTTGGA--------------------------------A-----------------------------ACA-AA----------AAC------------A---AAA----CAGCTCTATTGCTCACCC----------------------------------GTGCCTCCT-C-----------TCCACGGCTTGAGA-------TCCGCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................TGCCTCCT-C-----------TCCACGGCTTGAGA-------TC.....2511.001000010
....TGTATTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTTTTTTT..............................................................................................................................................................................................................................26200.55111100000
....TGTATTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTTTTTT...............................................................................................................................................................................................................................25200.50100000100
....TGTATTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTTTTTTTT-------......................................................................................................................................................................................................................27200.306000060
....TGTATTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTTTT.................................................................................................................................................................................................................................23200.306100050
.........................................................................................................................................................................................................TTTGGA--------------------------------A-----------------------------ACA-AA----------AAC------------A---AAA----CAGCTCTA..............................................................................................2740.251100000
.....GTATTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTTTTTTTT-------......................................................................................................................................................................................................................26200.102200000
.....GTATTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTTTTTTT..............................................................................................................................................................................................................................25200.102200000
..............................................................................................................................................................................................................A--------------------------------A-----------------------------ACA-AA----------AAC------------A---AAA----CAGCTCTC..............................................................................................22110.091000010
....TGTATTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTTTTTTC..............................................................................................................................................................................................................................26200.051100000
................................................................................................................................................................................................................................................................................................................................................................................TCCT-C-----------TCCACGGCTTGAGA-------TCCG...23200.051100000
....TGTATTCACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTTTTTTTT-------T.....................................................................................................................................................................................................................28200.051100000
droGri2
TTTATTTTC-------------------------------------------------------------------------------------------------------CTCCTTT----------------------------------------------------------------------------TTA-TGTA------------------------------------G-----------------------------GGGAAG----------AA--------------------A-----AAAATGTGACGGT--------------------------------------------CG-T-----------TGTGCGGATTCAGG-------TCGCTCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CTCCGTTTGTTTGG----------------------------------------------------------CATTCGG--------------------CCGTTTCT--TTCCCCCTTTTTTTG----TGTGTTGACATTATTGGTGT-GTTGTGTTTTTTTTTCC-------------------TTTTCACCCTTTT-TCCG---------------------------------------------------------------------------------------------------CCATA----C--------GT---CTGT-----GATGCCGAT-----------------------TCCTCC-A-----------CCTGGGCTTTTAGC-------TCACTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................T-----------------------TCCTCC-A-----------CCTGGGCTTTTAGC-------TCACT..27150.132020000
.........................................................................................................................TTG----TGTGTTGACATTATTGGTGT-........................................................................................................................................................................................................................................................................2390.111001000
......................................................................................................................................................................................................................................................................................................................................................T-----------------------TCCTCC-A-----------CCTGGGCTTTTAGC-------TCACC..27150.071010000
droBip1
TTCCTCCTTTTCGGT-----------------------------------------------------------------TCCCCTTTCTTGTGC--------------------------------------------------GG-G-CTT------------------G-ATATTTTCGTTTTATTCTTCC--TT-TGCA------------------------------------G-----------------------------GTG-AC-------------------------------------------------------------------------------------------TCCATA-T-----------CTTGGCACTTTAAC-------TCACTCASizeHit CountTotal NormTotal
No Reads
droKik1
CTCTGCTGCTACTGC------------------------------------------------------------------------------------------------TACTCTGCTCGTG----GGTCTTAGCGTCGAATGATC-GCTAAGCTTTCTCCGCCGTCTGT-GTG--TCTTCGTGATCATCCAGTCG-TCTGGGAA-------------------------------------------------------------------------------C--------------------CAGG-------------------------------TTCTGGGTCTCTGGCTCGTTGACTGCTTCCTTCAAATCTCTGA----GGGCTGCCGT-------TCGGTGTSizeHit CountTotal NormTotal
No Reads
droFic1
GCCCGGTATTTTG----------------------------------------------------------CCGCTGAATT--------------------------------------------------------------------CTTGAA-TTTGTTCTCCATCTGTAAT---TTTTTGGAGATTTG-----T-TTATGT---------------------------------------CGGATCTCGTTTTCCTTTTTATGACT---AG----------CT-------------ACGTTTG----T--------GA---CTAT-----GTTGCTAAC---------T-------ACGGCGTTCCCT-T-----------TATATGGTTTAAGT-------TCGCTAASizeHit CountTotal NormTotal
No Reads
droEle1
GTTAGCCGGTAATGG---------------------TGTCTACGGCTTTTTGAACGCTACCTGTCCCGCTCTTGCTCTC--------------------CTG------------ATTGTG----TGTGTCTG------TGGG---TG-TGCTT------------------G-ACCGTTTATCGTCCTTCCCCTTTCT-TCGGTTAGGGTA--------------------------------------------------------------CATTGCTCCTCCGAT------------A---GGA----CGGATTTGTTGTGACTGCTCC----------------------------------TCCTTA-T-----------TTTGCGGTTTTAAC-------TGGCTTASizeHit CountTotal NormTotal
No Reads
droRho1
GGCTCCGAGTATAAT------------------------------------------------------TAATCTTCGCCGCTGCTGGTTGAGCCTTTG------GAGGTTCTCCCGGTA----CTTGGAGA------GCGA---GT-TTTTAAG-TTT------------------G---------TTGTTCA--TT-CTGAAAAATGTGCGTAT------------------------------------------------------------AGTTTTAGCTTGTTGTTTTTGGCGTTGCTCA----T--------GT---TTGT-----TAGT-----------------------CGAGGATTTCT-A-----------CATGGGGTTTTAGT-------TCGTTTASizeHit CountTotal NormTotal
No Reads
droBia1
CGTTGGTTTCTCTGC---------------------------------------------------------TGCTCTT--------------------CTGTTGCT--GTTGTTCTGCTACGG----GTTTTTAGCGTCAATCGATC-GCTAAACTTGCTCCGCCATCTGA-ATG--TCTTCGTTGTCGTCCAGTCG-TCTGGGTA-------------------------------------------------------------------------------C--------------------CAGA-------------------------------TTCTGGGTTTTTGGCTCGTTGACTGCTTCCTTCAAATCTCTAA----GGGATGCCGT-------TCTGCGTSizeHit CountTotal NormTotal
No Reads
droTak1
TGTATTTTCGG--GC-------------------CGTGTTT----------------------------CCTCGCTCTGTTCCATCAGCTG--------------------------------------------------------------------------------T-GCT--TCGT----------------------------------------------------------------------------------------------CGTTCTCGCTTGCT-----------------------------------TTGTCC-----------------------------------GCAGTT-C-----------CTTGCTGTTTTAGATCGCTGATGTGCATSizeHit CountTotal NormTotal
No Reads
droEug1
CCGGTA--TTACTTTTGCCTTCTTTGCGGCCCGCTGTAGTT----------------------------GGGCGC--------------------------------TGTGCTCCCTGAA----CCGGTTTT------TTGA---AC-TCTCGAA-TCT------------------------------GTCCATTTTTTCTGTAAC--------------------------------G-----------------------------ATGAGA----------GT--------------------GGAA-------------------------------GTTTGGTTACTAGGGTCATTGGGATTTGCT-TTGA---TCGGG----TAAGTGTTAT-------TTTGATASizeHit CountTotal NormTotal
No Reads
dm3
TTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTTCAGA-------TCGCTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
TTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTTCAGA-------TCGCTGA2144.25170000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000020000000000000000000000000000000002000000000000000000000000000000000000000000000000160000000000000000001000000010000000000000000000000000
TTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTTCAGA-------TCGCTG.2040.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTTCAGA-------TCGCTGA2050.6030000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTTCAGA-------TCGCTG.1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
TTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTTCAGA-------TCGCT..1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
droSim2
GGAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCTTCAGA-------TCACTGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................TGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGC....................25117.001700000058010030000
...................................................................................................................................................................................................................................................................................................................................TGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCTTC.................28112.001200000023010060000
....GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGTAAC.................................................................................2618.00800000016100000000
...................................................................................................................................................................................................................................................................................................................................TGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCT...................2615.00500000020000012000
.............................................................................................................................................................................................................................................................................................................................TATAGCTGATGTAACT---------------------------------CCCGCG-C-----------TTCCC.......................2815.00500000014000000000
..................................................................................................................................................................................................................................................................................................................A----CGTGGGTATAGCTGATGTAACT---------------------------------CC.............................................2515.00500000000014000000
...............................................................................................................................................................................................................................................................................................................................TAGCTGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGG.....................2814.00400000010300000000
.................................................................................................................................................................................................................................................................................................................GA----CGTGGGTATAGCTGATGTAACT---------------------------------CC.............................................2613.00300000001002000000
................................................................................................................................................................................................................................................................................................................................................................................CGCG-C-----------TTCCCGGCTTCAGA-------TCACTGA2613.00300100011000000000
..................................................................................................................................................................................................................................................................................................................................CTGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGC....................2612.00200000010010000000
..................................................................................................................................................................................................................................................................................................................................................................................CG-C-----------TTCCCGGCTTCAGA-------TCACTGA2412.00200000002000000000
....GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGTAACT---------------------------------CC.............................................2912.00200000002000000000
...................................................................................................................................................................................................................................................................................................................................TGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCA...................2612.00200000000000020000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGGCTTCAGA-------TCACTG.2012.00200000020000000000
..AAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGTAAC.................................................................................2812.00200000002000000000
....GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGTAA..................................................................................2512.00200000001010000000
......................................................................................................................................................................................................................................................................................................................................TGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCTTC.................2512.00200000000100010000
.........................................................................................................................................................................................................................................................................................................................TGGGTATAGCTGATGTAACT---------------------------------CCCGCG-C-----------............................2712.00200010010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGGCTTCAGA-------TCACTGA2112.00200000020000000000
...............................................................................................................................................................................................................................................................................................................................TAGCTGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGC....................2912.00200000002000000000
...............................................................................................................................................................................................................................................................................................................................TAGCTGATGTAACT---------------------------------CCCGCG-C-----------TTCCC.......................2612.00200010001000000000
........................................................................................................................................................................................................................................................................................................................................TAACT---------------------------------CCCGCG-C-----------TTCCCGGCTTCAGA-------.......2621.50300000001110000000
....GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGTAACT---------------------------------...............................................2711.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCCCGGCTTCAGA-------TCACTGA2011.00100000010000000000
...AGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGTAAC.................................................................................2711.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................TGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCTTCAGA-------.......2811.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................CTGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCAA..................2811.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................TGGGTATAGCTGATGTAACT---------------------------------CCCGCG-C-----------T...........................2811.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................TGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGG.....................2411.00100000010000000000
...AGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGTAA..................................................................................2611.00100000000000010000
.....A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGTAACT---------------------------------CC.............................................2811.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................TGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCTT..................2711.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................CGTGGGTATAGCTGATGTAACT---------------------------------CCCGC..........................................2711.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................AACT---------------------------------CCCGCG-C-----------TTCCCGGCTTCAGA-------.......2521.00200000002000000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATAGCTGATGTAACT---------------------------------CCC............................................2311.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................CGTGGGTATAGCTGATGTAACT---------------------------------CC.............................................2411.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................GCTGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCT...................2811.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................GCTGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCA...................2811.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................GGTATAGCTGATGTAACT---------------------------------CCCGCG-C-----------............................2511.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................CTGATGTAACT---------------------------------CCCGCG-C-----------TTCCCGGCA...................2711.00100000000000010000
........................................................................................................................................................................................................................................................................................................................GTGGGTATAGCTGATGTAACT---------------------------------CCCGCG-C-----------............................2811.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................GTAACT---------------------------------CCCGCG-C-----------TTCCCGGCT...................2220.50100000000001000000
............................................................................................................................................................................................................................................................................................................................................T---------------------------------CCCGCG-C-----------TTCCCGGCTTCAGA-------TA.....2420.50100000000000010000
............................................................................................................................................................................................................................................................................................................................................T---------------------------------CCCGCG-C-----------TTCCCGGCTTCAGA-------TT.....2420.50100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................CGCG-C-----------TTCCCGGCTTCAGA-------TC.....2160.33200000000002000000
................................................................................................................................................................................................................................................................................................................................................................................CGCG-C-----------TTCCCGGCTTCAGA-------T......2060.33200000000002000000
.....A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATGT....................................................................................2240.25100000010000000000
.GAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGATG.....................................................................................2540.25100000001000000000
.GAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTGAT......................................................................................2450.20100000010000000000
...AGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGCTA........................................................................................2050.20100000000000010000
...AGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA----CGTGGGTATAGC..........................................................................................1850.20100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................CGCG-C-----------TTCCCGGCTTCAGA-------.......1960.17100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................CGCG-C-----------TTCCCGGCTTC.................1660.17100000000001000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATAGCTGATG.....................................................................................1590.11100000000001000000
droSec2
GTGTTGTTGATC----------------------------------------------------------------TGATCCGTATCGATACCTTGTAT------CGTCTTCCCCC--------TTTTCACC------CCAA---CG-TTTTG------------------T-GTTGTTTTTCTTTTGTTTTTGTTTA-TTCCTCGAAGT---------------------------------------------------------------------------------------------------------CTC------GTGGCCCG----------------------------CCGGCGCTCGCG-C-----------TTCCCGGCTTCAGA-------TCGCTGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................TCCGTATCGATACCTTGTAT------CGTC................................................................................................................................................................................................................................................................................................................2433.331010000
...............................................................................TCCGTATCGATACCTTGTAT------CGTCTTC.............................................................................................................................................................................................................................................................................................................2731.3344000
..........................................................................................................................................................................................................CTCGAAGT---------------------------------------------------------------------------------------------------------CTC------GTGGCCCG----------------------------CCGGCGT..............................................2611.0011000
..........................................................................................................................................................................................................CTCGAAGT---------------------------------------------------------------------------------------------------------CTC------GTGGCCCG----------------------------CCGGT................................................2411.0010010
................................................................................................................................................................................................................................................................................................................................................................................CGCG-C-----------TTCCCGGCTTCAGA-------TCGCTG.25200.4083050
.....................................................................................TCGATACCTTGTAT------CGTCTTCCCCC--------TT...............................................................................................................................................................................................................................................................................................27200.1022000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGGCTTCAGA-------TCGCTGA21200.1022000
.....................................................................................TCGATACCTTGTAT------CGTCTT..............................................................................................................................................................................................................................................................................................................20200.1022000
......................................................................................CGATACCTTGTAT------CGTCTTCCCCC--------T................................................................................................................................................................................................................................................................................................25200.1022000
.............................................................................................TTGTAT------CGTCTTCCCCC--------TTT..............................................................................................................................................................................................................................................................................................20200.0511000
.....................................................................................TCGATACCTTGTAT------CGTCTTCCCCC--------T................................................................................................................................................................................................................................................................................................26200.0511000
.....................................................................................TCGATACCTTGTAT------CGTCTTCCCCC--------TTT..............................................................................................................................................................................................................................................................................................28200.0511000
droYak3
CCTCTTTTTTAGTGT-----------------------------------------------------------------GCCCGTTGGTGGGC---------------------------------------------------CG-TCTTG------------------A-GTTCCTTTTTCCCGCTTTC-----C-TGATCTGATG----------------------------------------------------------------TATCGTTCTCCTGTT------------C---GAAC-----CCTCTATGATGGTTGTCC-----------------------------------GTGCTT-A-----------TGTGTGGTTTGGTGTC-----TCCGATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................TCC-----------------------------------GTGCTT-A-----------TGTGTGGTTTGGTGTC-----.......2620.50100000010000
..........................................................................................................................................................................................................TCTGATG----------------------------------------------------------------TATCGTTCTCCTGTT------------C---GAAC-----C...................................................................................................2820.50100100000000
droEre2
TTGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 03:16 PM