ID:

dps_2377

 Coordinate:

Unknown_singleton_3835:2509-2659 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.8 -17.5 -17.4

Flybase annnotation

CDS [Dpse\GA25163-cds]; exon [dpse_GLEANR_16494:3]; intron [Dpse\GA25163-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-3_DPer-I-intLTRGypsy+
mature
  1. Unknown_group_689:2795-2817 -
  2. Unknown_group_689:9030-9052 -
  3. dps_2192  Unknown_group_689:20383-20405 -
  4. Unknown_group_320:2971-2993 -
  5. Unknown_singleton_1577:17495-17517 -
  6. Unknown_singleton_1577:25594-25616 -
  7. Unknown_singleton_1577:33660-33682 -
  8. Unknown_singleton_1577:41798-41820 -
  9. dps_2377  Unknown_singleton_3835:2541-2563 +
  10. Unknown_singleton_3835:6770-6792 +
  11. Unknown_group_642:2912-2934 -
star
  1. dps_2377  Unknown_singleton_3835:2628-2655 +
  2. Unknown_singleton_3835:6867-6894 +
  3. Unknown_singleton_386:612-639 -
  4. Unknown_group_642:2030-2057 -
  5. Unknown_singleton_384:854-881 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTACGGCGGATGGGCAGAGCCAGCCAATAATTGGCAAGGTCACCACCGAAGTGGGTTTTCAAGGCCAGAAGAAAGTATTAAAATTGTTTGTAGTCCCATCCTTGGCGCCATAGGCATAGACTTTTGGTCCCGTTTTAATTTGTTACCTGCTTTTCTAGCCCATAAATCATCCAGTCCAGAGTTGTCAGGTTTAACATTCAATAGTACGTTACATGTGTGTTTGAAGCAGCAGCAAGGTCAGTTAGCAGAAA
**********************************************************************************..(((((((.((.(((....))).)).)))))))..((((...))))...........(((((((((...((((.....................))))....)))))..)))).****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 M059
embryo
 GSM444067
head
 GSM343916
embryo
 SRR902011
testis
 M062
head
 V112
male body
..................................................................................ATTGTTTGTAGTCCCATCCTTGG.................................................................................................................................................. 23 0 11 5.36 59 50 8 1 0 0 0 0 0
.....................................................................................GTTTGTAGTCCCATCCTTGGCGC............................................................................................................................................... 23 0 11 4.82 53 53 0 0 0 0 0 0 0
..................................................................................ATTGTTTGTAGTCCCATCCTTGGC................................................................................................................................................. 24 0 11 3.09 34 26 7 0 0 0 1 0 0
.........................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGA........................... 23 0 1 3.00 3 2 0 0 0 1 0 0 0
..................................................................................ATTGTTTGTAGTCCCATCCTTGGCGC............................................................................................................................................... 26 0 11 2.64 29 11 16 2 0 0 0 0 0
.....................................................................................GTTTGTAGTCCCATCCTTGGCG................................................................................................................................................ 22 0 11 2.36 26 26 0 0 0 0 0 0 0
.....................................................................................GTTTGTAGTCCCATCCTTGGC................................................................................................................................................. 21 0 11 2.27 25 24 0 0 0 1 0 0 0
.........................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTG............................ 22 0 11 1.73 19 17 2 0 0 0 0 0 0
...................................................................................TTGTTTGTAGTCCCATCCTTGGC................................................................................................................................................. 23 0 11 1.64 18 9 9 0 0 0 0 0 0
..................................................................................ATTGTTTGTAGTCCCATCCTTG................................................................................................................................................... 22 0 11 1.36 15 14 1 0 0 0 0 0 0
..................................................................................ATTGTTTGTAGTCCCATCCTTGGCG................................................................................................................................................ 25 0 11 1.36 15 14 1 0 0 0 0 0 0
...................................................................................TTGTTTGTAGTCCCATCCTTGGCGC............................................................................................................................................... 25 0 11 1.36 15 13 2 0 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCGAAG........................................................................................................................................................................................................ 24 0 16 1.19 19 19 0 0 0 0 0 0 0
.............................................................................................TCCCATCCTTGGCGCCATAGGCA....................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGTACGTTACATGTGTGTTTGAAGC........................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGAAGCA....................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGAAG......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGAAGC........................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................TGTAGTCCCATCCTTGGCGCCATAGG......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGTACGTTACATGTGTGTTTGAA.......................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................TACGTTACATGTGTGTTTGAAGCAGC..................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................GTTTGTAGTCCCATCCTTGGCGCCA............................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGAA.......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................TTGTTTGTAGTCCCATCCTTGG.................................................................................................................................................. 22 0 11 0.82 9 9 0 0 0 0 0 0 0
......................................................................................TTTGTAGTCCCATCCTTGGCGC............................................................................................................................................... 22 0 11 0.73 8 8 0 0 0 0 0 0 0
...................................................................................TTGTTTGTAGTCCCATCCTTGGCG................................................................................................................................................ 24 0 11 0.64 7 7 0 0 0 0 0 0 0
...........................................................................................AGTCCCATCCTCGTCGCCA............................................................................................................................................. 19 2 5 0.60 3 1 0 1 0 0 0 1 0
..............................................................................................................................................................................................................................GAAGCAGCGGCAAGGTCAAT......... 20 2 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................TTGTTTGTAGTCCCATCCTTG................................................................................................................................................... 21 0 11 0.45 5 5 0 0 0 0 0 0 0
.........................................................................................................................................................................TCCAGTCCAGAGTTGTCAGGTTTAACAT...................................................... 28 0 5 0.40 2 2 0 0 0 0 0 0 0
.....................................................................................GTTTGTAGTCCCATCCTTGG.................................................................................................................................................. 20 0 11 0.36 4 4 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGTACGTTACATGTGTGTTTG............................ 21 0 11 0.36 4 4 0 0 0 0 0 0 0
....................................................................................TGTTTGTAGTCCCATCCTTGGCGC............................................................................................................................................... 24 0 11 0.36 4 3 0 0 0 0 1 0 0
....................................................................................TGTTTGTAGTCCCATCCTTGGCG................................................................................................................................................ 23 0 11 0.36 4 4 0 0 0 0 0 0 0
............................................................................................GTCCCATCCTCGTCGCCA............................................................................................................................................. 18 2 9 0.33 3 2 0 0 0 0 0 1 0
.........................................................................................GTAATCCCATCCTCGTCGCCA............................................................................................................................................. 21 3 3 0.33 1 0 0 1 0 0 0 0 0
....................................................................................TGTTTGTAGTCCCATCCTTGG.................................................................................................................................................. 21 0 11 0.27 3 3 0 0 0 0 0 0 0
.....................................................................................GTTTGTAGTCCCATCCTTG................................................................................................................................................... 19 0 11 0.27 3 3 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TCAATAGTACGTTACATGTGTGTT.............................. 24 0 4 0.25 1 1 0 0 0 0 0 0 0
............................AATTGGCAAGGTCACCACCGAAG........................................................................................................................................................................................................ 23 0 16 0.25 4 4 0 0 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCGAA......................................................................................................................................................................................................... 23 0 16 0.25 4 4 0 0 0 0 0 0 0
..............................................................................................................................................................................TCCAGAGTTGTCAGGTTTAACATTCAATA................................................ 29 0 4 0.25 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................TCCAGTCCAGAGTTGTCAGGTTTAAC........................................................ 26 0 5 0.20 1 0 0 1 0 0 0 0 0
...................................................TGGGTTTTCAAGGCCAGAAGAAAGTATT............................................................................................................................................................................ 28 0 5 0.20 1 1 0 0 0 0 0 0 0
...........................................................................................................................................TTGTTACCTGCTTTTCTAGCCC.......................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................CATCCAGTCCAGAGTTGTCAGGTTT........................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0
............................................................................................................................................TGTTACCTGCTTTTCTAGCCC.......................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0 0
............................................................................................GTCCCATCCTAGTCGCCA............................................................................................................................................. 18 2 5 0.20 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................TCATCCAGTCCAGAGTTGTCAGGT............................................................. 24 0 5 0.20 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................TCATCCAGTCCAGAGTTGTCAGGTT............................................................ 25 0 5 0.20 1 1 0 0 0 0 0 0 0
.....................................................................................GTTTGTAGTCCCATCCTTGGCGA............................................................................................................................................... 23 1 11 0.18 2 2 0 0 0 0 0 0 0
..................................................................................ATTGTTTGTAGTTCCATCCTTG................................................................................................................................................... 22 1 11 0.18 2 0 0 0 0 0 2 0 0
....................................................................................TGTTTGTAGTCCCATCCTTGGC................................................................................................................................................. 22 0 11 0.18 2 1 0 0 0 0 1 0 0
..............................................................................................................................................................................TCCAGAGTTGTCAGGTTTAGCATTG.................................................... 25 2 6 0.17 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................TCATCCAGTCCAGAGTTGTCAGG.............................................................. 23 0 6 0.17 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................AAATCATCCAGTCCAGAGTTGTCAGG.............................................................. 26 0 6 0.17 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................TCCAGTCCAGAGTTGTCAGGTTTAG......................................................... 25 1 6 0.17 1 1 0 0 0 0 0 0 0
.....................................................GGTTTACAAGGCCAGGATA................................................................................................................................................................................... 19 3 20 0.15 3 2 0 0 0 0 0 0 1
....GGCGGATGGGCAGAGCCTGC................................................................................................................................................................................................................................... 20 1 14 0.14 2 2 0 0 0 0 0 0 0
....................................................................................................................................................................................GTCGTAAGGTTTAACCTTC.................................................... 19 3 7 0.14 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................TGCATCAAGGTCAGTTACCA.... 20 3 8 0.13 1 1 0 0 0 0 0 0 0
.........................................................TTCAGGGCCAGAGGGAAGTAT............................................................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 0 0 0 1
...........................TAATTGGCAAGGTCACCACCGAAGT....................................................................................................................................................................................................... 25 0 16 0.13 2 2 0 0 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCGA.......................................................................................................................................................................................................... 22 0 16 0.13 2 2 0 0 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACC............................................................................................................................................................................................................ 20 0 17 0.12 2 2 0 0 0 0 0 0 0
.............................................................................................TCCCATCCTCGTCGCCAT............................................................................................................................................ 18 2 20 0.10 2 2 0 0 0 0 0 0 0
.....................................................GGTTTACAAGGCCAGGAT.................................................................................................................................................................................... 18 3 20 0.10 2 2 0 0 0 0 0 0 0
...................................................................................TTGTTTGTAGTCCCATCCTTGGCGT............................................................................................................................................... 25 1 11 0.09 1 1 0 0 0 0 0 0 0
...........................................................................................................................................TTGTTACCTGCTTTTCTAGCC........................................................................................... 21 0 11 0.09 1 1 0 0 0 0 0 0 0
.....................................................................................GTTTGTAGTCCCATCCTTGGCGCT.............................................................................................................................................. 24 1 11 0.09 1 1 0 0 0 0 0 0 0
......................................................................................TTTGTAGTCCCATCCTTGGCGT............................................................................................................................................... 22 1 11 0.09 1 1 0 0 0 0 0 0 0
..................................................................................ATTGTTTGTGGTCCCATCCTTGG.................................................................................................................................................. 23 1 11 0.09 1 1 0 0 0 0 0 0 0
...................................................TGGGTTTTCAAGGCCAGAAGAAAGT............................................................................................................................................................................... 25 0 11 0.09 1 1 0 0 0 0 0 0 0
..................................................................................GTTGTTTGTAGTCCCATCCTTG................................................................................................................................................... 22 1 11 0.09 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................AATCATGCAGTACAGGGTT.................................................................... 19 3 11 0.09 1 1 0 0 0 0 0 0 0
........................................................................................TGTAGTCCCATCCTTGGCGC............................................................................................................................................... 20 0 11 0.09 1 1 0 0 0 0 0 0 0
..................................................................................AGTGTTTGTAGTCCCATCCTTGG.................................................................................................................................................. 23 1 11 0.09 1 0 0 1 0 0 0 0 0
..................................................................................ATTGTTTTTAGTCCCATCCTTGG.................................................................................................................................................. 23 1 11 0.09 1 1 0 0 0 0 0 0 0
.....................................................................................GCTTGTAGTCCCATCCTTGGCG................................................................................................................................................ 22 1 11 0.09 1 1 0 0 0 0 0 0 0
.....................................................................................GTTTGTAGTCCCGTCCTTGGCGC............................................................................................................................................... 23 1 11 0.09 1 1 0 0 0 0 0 0 0
..................................................................................................................................CGTTTTAATTTGTTACCTGCTTT.................................................................................................. 23 0 11 0.09 1 1 0 0 0 0 0 0 0
...................................................................................CTGTTTGTAGTCCCATCCTTGGC................................................................................................................................................. 23 1 11 0.09 1 1 0 0 0 0 0 0 0
......................................................................................TTTGTAGTCCCATCCTTGGC................................................................................................................................................. 20 0 11 0.09 1 1 0 0 0 0 0 0 0
......................................................................................TTTGTAGTCCCATCCTTGG.................................................................................................................................................. 19 0 11 0.09 1 1 0 0 0 0 0 0 0
...................................................................................TTGTTTGTAGTCCCATCCTT.................................................................................................................................................... 20 0 11 0.09 1 1 0 0 0 0 0 0 0
..................................................................................ATTGTTTGTAGTCCCATCCTTGGT................................................................................................................................................. 24 1 11 0.09 1 1 0 0 0 0 0 0 0
........................................CACCACCGAAGTGGGTTTTCAAGG........................................................................................................................................................................................... 24 0 11 0.09 1 1 0 0 0 0 0 0 0
....................................................................................TGTTTGTAGTCCAATCCTTGGCGC............................................................................................................................................... 24 1 12 0.08 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGTACGTTACATGTGTGTT.............................. 19 0 12 0.08 1 1 0 0 0 0 0 0 0
...........................................................................................................................................TTGTTACCTGCTTTTCTAGC............................................................................................ 20 0 12 0.08 1 1 0 0 0 0 0 0 0
.............................ATTGGCAAGGTCACCACCGAAGTGG..................................................................................................................................................................................................... 25 0 14 0.07 1 1 0 0 0 0 0 0 0
..............................TTGGCAAGGTCACCACCGAAGTGGG.................................................................................................................................................................................................... 25 0 14 0.07 1 1 0 0 0 0 0 0 0
................................GGCAAGGTCACCACCGAAGTGGG.................................................................................................................................................................................................... 23 0 14 0.07 1 1 0 0 0 0 0 0 0
...............................TGGCAAGGTCACCACCGAAGTGGGTT.................................................................................................................................................................................................. 26 0 14 0.07 1 1 0 0 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCGAAGTG...................................................................................................................................................................................................... 26 0 14 0.07 1 1 0 0 0 0 0 0 0
..............................TTGGCAAGGTCACCACCGAAGTGGGTTT................................................................................................................................................................................................. 28 0 14 0.07 1 1 0 0 0 0 0 0 0
.TACGGCGGATGGGCAGAG........................................................................................................................................................................................................................................ 18 0 15 0.07 1 1 0 0 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCGAAGA....................................................................................................................................................................................................... 25 1 16 0.06 1 1 0 0 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCG........................................................................................................................................................................................................... 21 0 16 0.06 1 1 0 0 0 0 0 0 0
..........................................................................................TGGTCCCATCCTCGTCGCCA............................................................................................................................................. 20 3 18 0.06 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................ATTGTCTGTTACATGTGTGTT.............................. 21 3 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................GATCCCATCCTTGTCGCCA............................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1
......................................................................................................................................................................................TGTCAGGTTTACAATTCGA.................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................TGTCAGGTTTAAACTTCGA.................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

CATGCCGCCTACCCGTCTCGGTCGGTTATTAACCGTTCCAGTGGTGGCTTCACCCAAAAGTTCCGGTCTTCTTTCATAATTTTAACAAACATCAGGGTAGGAACCGCGGTATCCGTATCTGAAAACCAGGGCAAAATTAAACAATGGACGAAAAGATCGGGTATTTAGTAGGTCAGGTCTCAACAGTCCAAATTGTAAGTTATCATGCAATGTACACACAAACTTCGTCGTCGTTCCAGTCAATCGTCTTT
******************************************************..(((((((.((.(((....))).)).)))))))..((((...))))...........(((((((((...((((.....................))))....)))))..)))).********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
 V112
male body		 GSM343916
embryo
 M062
head
...........................................................................................................................................................................................CCAAATTGTAAGTTATCATGCAAT........................................ 24 0 4 6.75 27 23 4 0 0 0 0 0
......................................................CAAAAGTTCCGGTCTTCTTTCATAAT........................................................................................................................................................................... 26 0 1 4.00 4 0 3 1 0 0 0 0
....................................................................................................................................................CGAAAAGATCGGGTATTTAGTAGGT.............................................................................. 25 0 4 3.50 14 0 2 12 0 0 0 0
............................................................................................CAGGGTAGGAACCGCGGTATCCGTAT..................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0 0
.................................................................................................................................................GGACGAAAAGATCGGGTATTTAGTAGGT.............................................................................. 28 0 4 2.00 8 2 5 1 0 0 0 0
............................................................................................................................ACCAGGGCAAAATTAAACAATGGACG..................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0
...........................................................................................................................................................................................CCAAATTGTAAGTTATCATGCAA......................................... 23 0 4 1.25 5 5 0 0 0 0 0 0
...........................................................................................................................................................................................CCAAATTGTAAGTTATCATGCAATG....................................... 25 0 4 1.25 5 5 0 0 0 0 0 0
.......................................................................................................................................................AAAGATCGGGTATTTAGTAGGT.............................................................................. 22 0 4 1.00 4 1 3 0 0 0 0 0
........................................................................................................................GAAAACCAGGGCAAAATTAAACAAT.......................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................CAGGGCAAAATTAAACAATGGACGAA................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................AGGAACCGCGGTATCCGTATCTC.................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................CGTCGTTCCAGTCAATCGTCT.. 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................CAGGGCAAAATTAAACAATGGACG..................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................GTCCAAATTGTAAGTTATCATGCAAT........................................ 26 0 4 1.00 4 3 1 0 0 0 0 0
.......................................................AAAAGTTCCGGTCTTCTTTCATAAT........................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................CCAGGGCAAAATTAAACAATGGATG..................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................................................AGATCGGGTATTTAGTAGGT.............................................................................. 20 0 4 1.00 4 2 2 0 0 0 0 0
..................................................................................................AGGAACCGCGGTATCCGTATCTGAA................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTCGTCGTTCCAGTCAATCGTCTT. 24 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................GGTAGGAACCGCGGTATCCGTAT..................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................CAGGGCAAAATTATACAATGGACG..................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................AACTTCGTCGTCGTTCCAGTCAAT....... 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTCGTCGTTCCAGTCAATCGTCT.. 23 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................AAGGGTAGGAACCGCGGTATCCGTAT..................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................TTAGTAGGTCAGGTCTCAACAGT................................................................ 23 0 6 1.00 6 6 0 0 0 0 0 0
............................................................................................CAGGGTAGGAACCGCGGTATCCGTA...................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................GAAAAGATCGGGTATTTAGTAGGT.............................................................................. 24 0 4 1.00 4 2 2 0 0 0 0 0
.............................................................................................................................................................CGGGTATTTAGTAGGTCAGGTCT....................................................................... 23 0 6 0.83 5 4 0 1 0 0 0 0
.............................................GGCTTCACCCAAAAGTTCCGGTCT...................................................................................................................................................................................... 24 0 11 0.82 9 9 0 0 0 0 0 0
.....................................................CCAAATGTTCCGGTCCTAT................................................................................................................................................................................... 19 3 20 0.80 16 16 0 0 0 0 0 0
..................................................................................................................................................GACGAAAAGATCGGGTATTTAGTAGGT.............................................................................. 27 0 4 0.75 3 0 1 2 0 0 0 0
.....................................................................................................................................................CAAAAGATCGGGTATTTAGTAGGT.............................................................................. 24 1 4 0.75 3 0 3 0 0 0 0 0
........................................................................................................................................................AAGATCGGGTATTTAGTAGGTCAGGT......................................................................... 26 0 4 0.75 3 0 2 1 0 0 0 0
......................................................................................................................................................AAAAGATCGGGTATTTAGTAGGT.............................................................................. 23 0 4 0.75 3 0 3 0 0 0 0 0
.................................................................................................................................................GGACGAAAAGATCGGGTATTTAGTAGG............................................................................... 27 0 4 0.75 3 0 0 3 0 0 0 0
.............................................GGCTTCACCCAAAAGTTCCGGTCTT..................................................................................................................................................................................... 25 0 11 0.73 8 8 0 0 0 0 0 0
..........................................................................................................................................................GATCGGGTATTTAGTAGGT.............................................................................. 19 0 4 0.50 2 2 0 0 0 0 0 0
...................................................................................................................................................ACGAAAAGATCGGGTATTTAGTAGGT.............................................................................. 26 0 4 0.50 2 0 2 0 0 0 0 0
.....................................................................................................................................................AAAAAGATCGGGTATTTAGTAGGT.............................................................................. 24 1 4 0.50 2 0 2 0 0 0 0 0
..............................................................................................................................................................GGGTATTTAGTAGGTCAGGTCT....................................................................... 22 0 6 0.50 3 2 0 1 0 0 0 0
...........................................................................................................................................................................................CCAAATTGTAAGTTATCATGCAATGT...................................... 26 0 4 0.50 2 0 0 2 0 0 0 0
.............................................................................................................................................................CGGGTATTTAGTAGGTCAGGTCTCA..................................................................... 25 0 6 0.50 3 1 2 0 0 0 0 0
....................................................................................................................................................AAAAAAGATCGGGTATTTAGTAGGT.............................................................................. 25 2 5 0.40 2 0 2 0 0 0 0 0
...................GGTCGGTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 26 0 12 0.33 4 4 0 0 0 0 0 0
...............................................................................................................................................................GGTATTTAGTAGGTCAGGT......................................................................... 19 0 6 0.33 2 1 1 0 0 0 0 0
.............................................................................................................................................................CGGGTATTTAGTAGGTCAGGTC........................................................................ 22 0 6 0.33 2 1 0 0 0 1 0 0
.............................................................................................................................................................AGGGTATTTAGTAGGTCAGGTCT....................................................................... 23 1 6 0.33 2 0 0 2 0 0 0 0
....................................................................................................................................................................TTAGTAGGTCAGGTCTCAACAG................................................................. 22 0 6 0.33 2 2 0 0 0 0 0 0
....................GTCGGTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 25 0 12 0.33 4 4 0 0 0 0 0 0
..............................................................................................................................................................GGGTATTTAGTAGGTCAGGT......................................................................... 20 0 6 0.33 2 0 2 0 0 0 0 0
..........................................GGTGGCTTCACCCAAAAGTTCCGGT........................................................................................................................................................................................ 25 0 10 0.30 3 3 0 0 0 0 0 0
........................................................AAAGTTGCGGTCGTCTTTCAT.............................................................................................................................................................................. 21 2 7 0.29 2 2 0 0 0 0 0 0
..................................................................................................................................................GACGAAAAGGTCGGGTATTTAGTAGGT.............................................................................. 27 1 4 0.25 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................CCAAATTGTAAGTTATCATG............................................ 20 0 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................GTCCAAATTGTAAGTTATCATGCAATG....................................... 27 0 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................................................................AGATCGGGTATTTAGTAGGTCAGGTCT....................................................................... 27 0 4 0.25 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................TGTCAGTTTTCATGCAATG....................................... 19 2 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................TCCAAATTGTAAGTTATCATGCAAT........................................ 25 0 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................................AAGATCGGGTATTTAGTAGGT.............................................................................. 21 0 4 0.25 1 0 0 0 0 1 0 0
.......................................................................................................................................................AAAGATCGGGAATTTAGTAGGT.............................................................................. 22 1 4 0.25 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................CCAAATTGTAAGTTATCATGCA.......................................... 22 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................................................................AAAGATCGGGTATTTAGTAGGTCAGGT......................................................................... 27 0 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................................................................AGATCGGGTATTTAGTAGGTCAGGT......................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................TCCAAATTGTCAGTTATCATGCAAT........................................ 25 1 4 0.25 1 0 0 0 1 0 0 0
...........................................................................................................................................................ATCGGGTATTTAGTAGGTCAGGTCT....................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................................................................AGTCCAAATTGTAAGTTATCATGCAA......................................... 26 0 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................ATCGGGTATTTAGTAGGTCAGGT......................................................................... 23 0 4 0.25 1 0 0 0 0 1 0 0
........................................................................................................................................................................................AGTCCAAATTGTAAGTTATCATGCAAT........................................ 27 0 4 0.25 1 0 1 0 0 0 0 0
..............GTCTCGGTCGGTTATTAACCGTT...................................................................................................................................................................................................................... 23 0 13 0.23 3 3 0 0 0 0 0 0
....................................................................................................................................................AGAAAAGATCGGGTATTTAGTAGGT.............................................................................. 25 1 5 0.20 1 0 0 1 0 0 0 0
...........................................................................................................................................................................CTCAGGTCTCAACAGTCCAAAT.......................................................... 22 1 5 0.20 1 0 0 0 1 0 0 0
.................................................TCACCCAAAAGTTCCGGTCTTCTTTCAT.............................................................................................................................................................................. 28 0 5 0.20 1 1 0 0 0 0 0 0
..................................................CACCCAAAAGTTCCGGTCTTCTTTCAT.............................................................................................................................................................................. 27 0 5 0.20 1 1 0 0 0 0 0 0
.............................................................................................................................................................CGGGTATTTAGTAGGTCAGGT......................................................................... 21 0 6 0.17 1 0 0 0 1 0 0 0
...................................................................................................................................................................ATTAGTAGGTCAGGTCTCAACAGT................................................................ 24 1 6 0.17 1 1 0 0 0 0 0 0
....................................................................................................................................................................TTAGTAGGTCAGGTCTCAAC................................................................... 20 0 6 0.17 1 1 0 0 0 0 0 0
....................................................................................................................................................................TTAGTAGGTCAGGTCTCAACAGTC............................................................... 24 0 6 0.17 1 1 0 0 0 0 0 0
...............................................................................................................................................................GGTATTTAGTAGGTCAGGTCTCA..................................................................... 23 0 6 0.17 1 1 0 0 0 0 0 0
....................................................CCCAAATGTTCCGGTCCTAT................................................................................................................................................................................... 20 3 12 0.17 2 2 0 0 0 0 0 0
..................................................................................................................................................................ATTTAGTAGGTCAGGTCTCAACAGT................................................................ 25 0 6 0.17 1 1 0 0 0 0 0 0
..........TCCCGTCTCGGACGGTTATTAACCGT....................................................................................................................................................................................................................... 26 2 13 0.15 2 2 0 0 0 0 0 0
.........TACCCGTCTCGGTCGGTTATT............................................................................................................................................................................................................................. 21 0 13 0.15 2 2 0 0 0 0 0 0
.......CCTACCCGTCTCGGTCGGTTATTAACC......................................................................................................................................................................................................................... 27 0 13 0.15 2 2 0 0 0 0 0 0
...........CCCGTCTCGGTCGGTTATTAACCGT....................................................................................................................................................................................................................... 25 0 13 0.15 2 2 0 0 0 0 0 0
......GCCTACCCGTCTCGGTCGGTTAT.............................................................................................................................................................................................................................. 23 0 13 0.15 2 2 0 0 0 0 0 0
..................................GTTCCAGTGGTGGCTTCACCCAAAAGT.............................................................................................................................................................................................. 27 0 14 0.14 2 2 0 0 0 0 0 0
.................................................................................................................................................GTACGAAAAGATCGGGTA........................................................................................ 18 1 7 0.14 1 1 0 0 0 0 0 0
.....................................................CCAAAAGTTCCGGTCTTCTTTCAT.............................................................................................................................................................................. 24 0 7 0.14 1 1 0 0 0 0 0 0
........................GTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 21 0 16 0.13 2 2 0 0 0 0 0 0
...........................................TTGGCTTCACCCAAAAGTTCCGGT........................................................................................................................................................................................ 24 1 10 0.10 1 1 0 0 0 0 0 0
............................................TGGCTTCACCCAAAAGTTCCGGTCTT..................................................................................................................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0 0
................................................................................TTTAACAAACATCAGGGTAGGAAC................................................................................................................................................... 24 0 10 0.10 1 1 0 0 0 0 0 0
...........................................GTGGCTTCACCCAAAAGTTCCGG......................................................................................................................................................................................... 23 0 10 0.10 1 1 0 0 0 0 0 0
...........................................ATGGCTTCACCCAAAAGTTCCGGT........................................................................................................................................................................................ 24 1 10 0.10 1 1 0 0 0 0 0 0
............................................TGGCTTCACCCAAAAGTTCCGGT........................................................................................................................................................................................ 23 0 10 0.10 1 0 0 0 0 0 1 0
............................................TGGCTTCACCCAAAAGTTACGGT........................................................................................................................................................................................ 23 1 10 0.10 1 0 0 0 0 0 1 0
.............................................GGCTTCACCCAAAAGTTCCGGT........................................................................................................................................................................................ 22 0 11 0.09 1 1 0 0 0 0 0 0
..................................GTTCCAGTGGTGGCTTCACCCAAAAGTT............................................................................................................................................................................................. 28 0 11 0.09 1 1 0 0 0 0 0 0
.............................................GGCTTCACCCAAAAGTTCCGTT........................................................................................................................................................................................ 22 1 11 0.09 1 0 0 0 1 0 0 0
................................................TTCACCCAAAAGTTCCGGTCTTCTT.................................................................................................................................................................................. 25 0 11 0.09 1 0 0 0 1 0 0 0
.....................................CCAGTGGTGGCTTCACCCAAAAGTT............................................................................................................................................................................................. 25 0 11 0.09 1 1 0 0 0 0 0 0
...............................................CTTCACCCAAAAGTTCCGGTCTT..................................................................................................................................................................................... 23 0 11 0.09 1 1 0 0 0 0 0 0
.............................................GGCTTCACCCAAAAGTTCCGGTCTTCTT.................................................................................................................................................................................. 28 0 11 0.09 1 1 0 0 0 0 0 0
.................................................TCACCCAAAAGTTCCGGTCTTCTTT................................................................................................................................................................................. 25 0 11 0.09 1 1 0 0 0 0 0 0
.............................................GGCTTCACCCAAAAGTTCCGGTCTTC.................................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0 0 0
.............................................GGCTTCACCCAAAAGTTCCGGTCTTCT................................................................................................................................................................................... 27 0 11 0.09 1 1 0 0 0 0 0 0
..................................................CACCCAAAAGTTCCGGTCTTCTTTC................................................................................................................................................................................ 25 0 11 0.09 1 1 0 0 0 0 0 0
.................................................TCACCCAAAAGTTCCGGTCTTCTT.................................................................................................................................................................................. 24 0 11 0.09 1 0 1 0 0 0 0 0
...................GGTCGGTTATTAACCGTTCCAGTGGTC............................................................................................................................................................................................................. 27 1 12 0.08 1 1 0 0 0 0 0 0
....................GTCGGTTATTAACCGTTCCAGTGGTC............................................................................................................................................................................................................. 26 1 12 0.08 1 1 0 0 0 0 0 0
..................CGGTCGGTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 27 0 12 0.08 1 1 0 0 0 0 0 0
.............AGTCTCGGTCGGTTATTAACCG........................................................................................................................................................................................................................ 22 1 13 0.08 1 1 0 0 0 0 0 0
....CCGCCTACCCGTCTCGGTCGGT................................................................................................................................................................................................................................. 22 0 13 0.08 1 1 0 0 0 0 0 0
.............CGTCTCGGTCGGTTATTAACCGT....................................................................................................................................................................................................................... 23 0 13 0.08 1 1 0 0 0 0 0 0
.......CCTACCCGTCTCGGTCGGTTAT.............................................................................................................................................................................................................................. 22 0 13 0.08 1 1 0 0 0 0 0 0
...........CCCGTCTCGGTCGGTTATTAACTGTT...................................................................................................................................................................................................................... 26 1 13 0.08 1 1 0 0 0 0 0 0
....................GTCGGTTATTAACCGTTCCAGTGG............................................................................................................................................................................................................... 24 0 13 0.08 1 1 0 0 0 0 0 0
.......CCTACCCGTCTCGGTCGGTTATTAACCGT....................................................................................................................................................................................................................... 29 0 13 0.08 1 1 0 0 0 0 0 0
...................ACTCGGTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 26 2 13 0.08 1 1 0 0 0 0 0 0
.......CCTACCCGTCTCGGTCGGTT................................................................................................................................................................................................................................ 20 0 13 0.08 1 1 0 0 0 0 0 0
....................TTCGGTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 25 1 13 0.08 1 1 0 0 0 0 0 0
........CTACCCGTCTCGGTCGGTTAT.............................................................................................................................................................................................................................. 21 0 13 0.08 1 1 0 0 0 0 0 0
........CTACCCGTCTCGGTCGGTTATTAACCGT....................................................................................................................................................................................................................... 28 0 13 0.08 1 1 0 0 0 0 0 0
.............CGTCTCGGTCGGTTATTAACCGTG...................................................................................................................................................................................................................... 24 1 13 0.08 1 1 0 0 0 0 0 0
..............GTCTCGGTCGGTTATTAACCGT....................................................................................................................................................................................................................... 22 0 13 0.08 1 1 0 0 0 0 0 0
..........ACCCGTCTCGGTCGGTTATT............................................................................................................................................................................................................................. 20 0 13 0.08 1 1 0 0 0 0 0 0
....................CTCGGTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 25 1 13 0.08 1 1 0 0 0 0 0 0
....CCGCCTACCCGTCTCGGTCGGTTAT.............................................................................................................................................................................................................................. 25 0 13 0.08 1 1 0 0 0 0 0 0
....CCGCCTACCCGTCTCGGTCGGTTATT............................................................................................................................................................................................................................. 26 0 13 0.08 1 1 0 0 0 0 0 0
....................................TCCAGTGGTGGCTTCACCCAAAA................................................................................................................................................................................................ 23 0 14 0.07 1 1 0 0 0 0 0 0
....................................TCCAGTGGTGGCTTCACCCAAAAGT.............................................................................................................................................................................................. 25 0 14 0.07 1 1 0 0 0 0 0 0
....CCGCCTACCCGTCTCGGGC.................................................................................................................................................................................................................................... 19 1 14 0.07 1 0 0 0 0 0 0 1
....ACGCCTACCAGTCTCGGTC.................................................................................................................................................................................................................................... 19 2 15 0.07 1 0 0 0 0 0 1 0
......................CGGTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 23 0 15 0.07 1 1 0 0 0 0 0 0
.......................GGTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 22 0 16 0.06 1 1 0 0 0 0 0 0
.......................GGTTATTAACCGTTCCAG.................................................................................................................................................................................................................. 18 0 17 0.06 1 1 0 0 0 0 0 0
.....................................................CCAAATGTTCCGGTCCTCTA.................................................................................................................................................................................. 20 3 19 0.05 1 1 0 0 0 0 0 0
..................................GTACAAGTGGTGGCTTCA....................................................................................................................................................................................................... 18 2 19 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................ATGTATACATAAACTTCGT....................... 19 2 20 0.05 1 0 0 0 0 0 1 0
.........AAAACGTCTCGGTCGGTTAT.............................................................................................................................................................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0 0
.....................................................CCAAATGTTCCGGTCCTA.................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0
........CTACACGGCTGGGTCGGTT................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0
.......................................................AAAAGTTCCGATCTGGTTTC................................................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................CGAAATTAAACCATGGTCGA.................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_singleton_3835:2459-2709 + dps_2377 GTACGGCGGATGGGCAGAGC-CAGCCAATAA--TTGGCAAGGTCACCACCGAAGTGGGTTTTCAAGGCCAGAAGAAAGTATTAAAATTGTTTGTAGTCCCATCCTTGGCGCCA----------TAGGCATAGACTTTTGGTCCCGTTTTAATTTGTTACCTGCTTTTCTAGCC----CATAAATCATC-CAGTCCAGAGTTGTCAGGTTTAACATTCAATAGTACGTTACATGTGTGTTT---GAAGCAGCAGCAAGGTCAGTTAGCAGAAA
droPer2 scaffold_135:101365-101629 + GTACGGCGGATGGGCAGAGC-CAGCCAATAAA-TTGGCAAGGTCACCACCGAAGTGGGTTTTCAAGGCCAGAAGAAAGTATTGAAATTGTTTGTAGTCCCATCCTGGGCGCAAGACCTATATCTAGGCATAGACTTTTGGTCTCGTTTTAATTTGTTACCTGCTTTTCTAGCC----CATAAAGCATC-CAGTCCAGAGTTATCAGGTTTAGCATTCGATAGTACGTTACATGTGTGTTTGTCGAAGCAGCAGCAAGCTCAGTTAGCAGAGA
droWil2 scf2_1100000005174:376-610 + ATACAGCAGATGGACAATAG-CAAGTGATTC--TAGGAAAGACTCTTACCTCTGTTAGCTTTCAAGGAAATGAAAAACCAATAACTCTTTATGTTGCACCTTCGCTGGCACAGATTCTCTATTTAGGCATAGACTTTTGGAGAGGCTTTAATTTGTTACCGGCCTTTATGGCA----CATAAAGGAAA-CGAACCAACCGTGGCTTGTATTAATCTCGATAGCAAATTAAAGGTGTCATT-----------------------------GAA
droVir3 scaffold_13036:899140-899341 + AAACCGCCCATGGAAAAAACTCAATATATAT--TGAAACGGTTACGCACAGAAATTTATTATGGTGGAAAGGTTAAACGAATTACTTTTTATATAGTCCCTTCTCTTATTCAACCGCTTTGTTTGGGCATAGACCTTTGGTCAACGTTTGAGCTGTTGCCTCCTTGCTTGTTAAGGCCATTGAGGATT-CGCTGCGAGC-----------------------------------TT---T-----------------------------AAC
droMoj3 scaffold_6500:6927007-6927156 - GTACTGCAGATGGCAAGGCA-CAGAATATAA--TAGGCAAAATCACTACAGAAATCAAATTTAAAAATGAAGCTAGAATGTTGACATTTTATATAGTACCCTCCTTATCTCAAGATTTATATTTAGGGATAGATTTTTGGACCCAATTTTATT-----------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15120:71324-71499 + GTTCGGCAGATTGCCCTAAA-CAACAAATTA--TTGGTAGGATGATGACGCCAGTTAGTTTTCGCGGTGAGACTAAGCCATTGTGTATTTATATAGTACCGTCTTTGTCTCAAAACTTATATTTCGGCATAGATTTTTGGCGTAGTTTTAATTCAGTGTCCTTGTATGTTATT----CATAAA-----------------------------------------------------------------------------------------
droAna3 scaffold_3888:4409-4648 - GTACTGCCGATGGAAATAAG-CAACAAATAA--TTGGTAAATTTAAGACATTGATAGAATATAAAGGAATGAAAAGGGAATTAGAATTTCATATAATCCCCTCTTTGAGGCAAGATATTTATTTAGGAATAGATTTTTGGACAGCTTACGAGCTGTTGCCGCCTACCCTAGCTA----TC-------------TCAGAGATCTCAGGA---------GATGCGGAGCTGCATTCGT---TATCAAAAGGGCAGCAACTTAGATTAGAAAAAG
droBip1 scf7180000394990:2238-2477 - GTACTGCCGATGGAAACAAG-CAACAAATAA--TAGGTAAATTTAAGACAGAGATAGAATTTAAAGGAATAAAAAGAGAATTAGAATTTCATATAATCCCCTCTCTAAGGCAAGATATTTACTTAGGAATAGATTTTTGGACAGCTTACGAACTGTTGCCGCCGACCCTAGCTA----TC-------------TCAGAGATCTCAGGA---------GATGCGCAGGAGCACTTGT---TATCGAAATGGCAGCAACTTAAACTAGAAAAAG
droKik1 scf7180000298269:12299-12491 - GTACCGCAGATGGTGCCAAA-CAGCCAATTA--TAGGCCGACTCAGCACAGAGGTTTGCTTCCAAGGAGAAATGAGGGAGTTAAAGTTTTACGTTGTACCTTCGTTGCAGCAAGACCTTTATTTAGGCATAGAGTTTTGGAGGAGCTATAATTTGTTGCCAGTGTTTCTAGCG----AACCAAATTCTTAAGCCTAGTGT------------------------------------------------------------------------
droFic1 scf7180000453436:2868-3042 + GCACGGCGGATGGCCAGTAT-CAAAGTATTG--TTGGAAAACTTTCTTTAGAAGTCACTTATCGAGGAACAACAAAGCGCTTCACTTTATATATTGTCCCTTCACTTGTTCAGTCGTTGTATTTAGGCATTGATTTTTGGATCGCATTTGATATGTTACCTTCGGGTTTGTCAG----TCCA------------------------------------------------------------------------------------------
droEle1 scf7180000487993:4228-4400 + GCACGGCAGATGGTCAGTTA-CAGACTATAA--TTGGTAAACTTAATGTAGACGTCACTTATCGAGAGACAACAAAGTGTCTAAATTTGTACATCGTACCGTCACTTGTTCAGTCGTTATATTTAGGCATTGACTTTTGGACTGCATTTGATATATGTCCTTCTGGATTGTCAG----TC--------------------------------------------------------------------------------------------
droRho1 scf7180000762590:1000-1175 + GCACAGCAGATGTAACAAGT-CAGTCAATCA--TCGGGAGGATCACCACAGCAGTTTGTTTTCGAGGAGAGACAAAAGAATTAAAGTTTTACGTTGTACCATCACTGCAGCAGGACCTTTACTTAGGGATCGAGTTTTGGAGAAGTTATAACCTTCATCCAGTTTTCCTTGCA----GATAAA-----------------------------------------------------------------------------------------
droBia1 scf7180000300553:2889-3042 + GTACAGCTGATGGTAAAAGA-CAACAAGTCG--TTGGACGTTTTCGTACTCCAGTCCAATACAAGGGGGTCGTCAAAGATTTGGATCTCAATATAATACCATCGTTGAGCCAAGACCTATATTTAGGGATTGACTTTTGGTCCAAGTTTGGTCTGTT-------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415194:1449-1642 - GCACTGCCGATGGTGTCAAT-CAGGCAATCG--TTGGGCGAATAACCACTTCTGTGACGTTTCGAGGCGAAACAAAACAATTAACATTCTACATTGTACCATCATTACAGCAAGATTTGTATCTAGGAATTACATTTTGGACTAGTTATAATCTTCTGCCGGTATTTCTTGCT----AATCAGTCATGTTAGCACAGTGTT-----------------------------------------------------------------------
droEug1 scf7180000405940:1535-1650 - AAACAGCAGACGGTCAATCC-CAACCGATAA--GTGGTTGACTATCTACGGAAGTCTCCTTCCGGAGCGATAAGAAAACATTAATCTTCAATGTAGTACCATCTCTAGCAGAAGAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 node_82430:6-168 + AAACTGCAGATGGAAAGTCC-CAGCGGGTTA--TGGGCAAGCTGACCACAGAAATATTCTTTAGGAACAAGTCGGAGGAAATTAATTTGTATATCGTTCCATCGTTGTCTCAAAATCTTTACCTAGGAATTGATTTCTGGATCAGGTTTGATTTGCTACCTTCGTT----------------------------------------------------------------------------------------------------------
droSec2 scaffold_62:149441-149517 - TAACAGCCGACGGACAATCC-CAAAGAATTA--CCGGCAGAGTAACCACTGAAGTGTCCTTTCGGAACGAGAATAAAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:167040-167226 - GTACAGCAGACGCGGCTAAA-CAGCCAATTA--TTGGAAAAATTACTACCGATGTCTGTTTCCAAGGAGAAACAAGGGAGTTAACTTTTTATGAAGTACCTTCCTTGCAGCAAGACCTTTATTTAGCCATCGAATTTTGGAGGACCTATAATTTGTTGCCAGTGTTCCTAGCA----AACCAAACTCT------------------------------------------------------------------------------CCAAAG
droEre2 scaffold_3124:1878-2071 - GTACAGCAGAGGGCAAGAAG-CAACCCATTTTTTATCACGTATTATCACCTTCAAATCCTTCAGAGGTGCGTCAAAGCTTCTTTGCTTATGGATAGTCCCAACTTTACTTCACGATTTTTATCTGGGAAAAAATTTTTGGAATAGTTTTAAATTATTGCCTGATTTTATAGCG----AACCAAAGTTT-------------------------------------------------------------------------ATCTATTACAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTACGGCGGATGGGCAGAGC-CAGCCAATAA--TTGGCAAGGTCACCACCGAAGTGGGTTTTCAAGGCCAGAAGAAAGTATTAAAATTGTTTGTAGTCCCATCCTTGGCGCCA----------TAGGCATAGACTTTTGGTCCCGTTTTAATTTGTTACCTGCTTTTCTAGCC----CATAAATCATC-CAGTCCAGAGTTGTCAGGTTTAACATTCAATAGTACGTTACATGTGTGTTT---GAAGCAGCAGCAAGGTCAGTTAGCAGAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................ATTGTTTGTAGTCCCATCCTTGG....................................................................................................................................................................23115.365905010000800
........................................................................................GTTTGTAGTCCCATCCTTGGCGC.................................................................................................................................................................23114.825305300000000
.....................................................................................ATTGTTTGTAGTCCCATCCTTGGC...................................................................................................................................................................24113.093402600000710
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTT---GA...........................2313.0030200100000
.....................................................................................ATTGTTTGTAGTCCCATCCTTGGCGC.................................................................................................................................................................26112.6429011200001600
........................................................................................GTTTGTAGTCCCATCCTTGGCG..................................................................................................................................................................22112.362602600000000
........................................................................................GTTTGTAGTCCCATCCTTGGC...................................................................................................................................................................21112.272502400100000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTT---G............................22111.731901700000200
......................................................................................TTGTTTGTAGTCCCATCCTTGGC...................................................................................................................................................................23111.64180900000900
.....................................................................................ATTGTTTGTAGTCCCATCCTTG.....................................................................................................................................................................22111.361501400000100
.....................................................................................ATTGTTTGTAGTCCCATCCTTGGCG..................................................................................................................................................................25111.361501400000100
......................................................................................TTGTTTGTAGTCCCATCCTTGGCGC.................................................................................................................................................................25111.361501300000200
............................TAA--TTGGCAAGGTCACCACCGAAG..........................................................................................................................................................................................................................24161.191901900000000
................................................................................................TCCCATCCTTGGCGCCA----------TAGGCA...............................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................AGTACGTTACATGTGTGTTT---GAAGC........................2511.0010100000000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTT---GAAGCA.......................2711.0010100000000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTT---GAAG.........................2511.0010100000000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTT---GAAGC........................2611.0010100000000
...........................................................................................TGTAGTCCCATCCTTGGCGCCA----------TAGG.................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................AGTACGTTACATGTGTGTTT---GAA..........................2311.0010100000000
..............................................................................................................................................................................................................................TACGTTACATGTGTGTTT---GAAGCAGC.....................2611.0010000010000
........................................................................................GTTTGTAGTCCCATCCTTGGCGCCA----------.....................................................................................................................................................2511.0010100000000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTT---GAA..........................2411.0010100000000
......................................................................................TTGTTTGTAGTCCCATCCTTGG....................................................................................................................................................................22110.8290900000000
.........................................................................................TTTGTAGTCCCATCCTTGGCGC.................................................................................................................................................................22110.7380800000000
......................................................................................TTGTTTGTAGTCCCATCCTTGGCG..................................................................................................................................................................24110.6470700000000
......................................................................................TTGTTTGTAGTCCCATCCTTG.....................................................................................................................................................................21110.4550500000000
..........................................................................................................................................................................................TC-CAGTCCAGAGTTGTCAGGTTTAACAT.........................................................2850.4020200000000
........................................................................................GTTTGTAGTCCCATCCTTGG....................................................................................................................................................................20110.3640400000000
............................................................................................................................................................................................................................AGTACGTTACATGTGTGTTT---G............................21110.3640400000000
.......................................................................................TGTTTGTAGTCCCATCCTTGGCGC.................................................................................................................................................................24110.3640300000010
.......................................................................................TGTTTGTAGTCCCATCCTTGGCG..................................................................................................................................................................23110.3640400000000
.......................................................................................TGTTTGTAGTCCCATCCTTGG....................................................................................................................................................................21110.2730300000000
........................................................................................GTTTGTAGTCCCATCCTTG.....................................................................................................................................................................19110.2730300000000
.......................................................................................................................................................................................................................TCAATAGTACGTTACATGTGTGTT.................................2440.2510100000000
.............................AA--TTGGCAAGGTCACCACCGAAG..........................................................................................................................................................................................................................23160.2540400000000
............................TAA--TTGGCAAGGTCACCACCGAA...........................................................................................................................................................................................................................23160.2540400000000
................................................................................................................................................................................................TCCAGAGTTGTCAGGTTTAACATTCAATA...................................................2940.2510100000000
..........................................................................................................................................................................................TC-CAGTCCAGAGTTGTCAGGTTTAAC...........................................................2650.2010010000000
......................................................TGGGTTTTCAAGGCCAGAAGAAAGTATT..............................................................................................................................................................................................2850.2010100000000
........................................................................................................................................................TTGTTACCTGCTTTTCTAGCC----C..............................................................................................2250.2010100000000
........................................................................................................................................................................................CATC-CAGTCCAGAGTTGTCAGGTTT..............................................................2550.2010100000000
.........................................................................................................................................................TGTTACCTGCTTTTCTAGCC----C..............................................................................................2150.2010100000000
.......................................................................................................................................................................................TCATC-CAGTCCAGAGTTGTCAGGT................................................................2450.2010100000000
.......................................................................................................................................................................................TCATC-CAGTCCAGAGTTGTCAGGTT...............................................................2550.2010100000000
........................................................................................GTTTGTAGTCCCATCCTTGGCGA.................................................................................................................................................................23110.1820200000000
.......................................................................................TGTTTGTAGTCCCATCCTTGGC...................................................................................................................................................................22110.1820100000010
.......................................................................................................................................................................................TCATC-CAGTCCAGAGTTGTCAGG.................................................................2360.1710100000000
....................................................................................................................................................................................AAATCATC-CAGTCCAGAGTTGTCAGG.................................................................2660.1710100000000
..........................................................................................................................................................................................TC-CAGTCCAGAGTTGTCAGGTTTAG............................................................2560.1710100000000
............................TAA--TTGGCAAGGTCACCACCGAAGT.........................................................................................................................................................................................................................25160.1320200000000
............................TAA--TTGGCAAGGTCACCACCGA............................................................................................................................................................................................................................22160.1320200000000
............................TAA--TTGGCAAGGTCACCACC..............................................................................................................................................................................................................................20170.1220200000000
......................................................................................TTGTTTGTAGTCCCATCCTTGGCGT.................................................................................................................................................................25110.0910100000000
........................................................................................................................................................TTGTTACCTGCTTTTCTAGCC----...............................................................................................21110.0910100000000
........................................................................................GTTTGTAGTCCCATCCTTGGCGCT................................................................................................................................................................24110.0910100000000
.........................................................................................TTTGTAGTCCCATCCTTGGCGT.................................................................................................................................................................22110.0910100000000
......................................................TGGGTTTTCAAGGCCAGAAGAAAGT.................................................................................................................................................................................................25110.0910100000000
...........................................................................................TGTAGTCCCATCCTTGGCGC.................................................................................................................................................................20110.0910100000000
...............................................................................................................................................CGTTTTAATTTGTTACCTGCTTT..........................................................................................................23110.0910100000000
.........................................................................................TTTGTAGTCCCATCCTTGGC...................................................................................................................................................................20110.0910100000000
.........................................................................................TTTGTAGTCCCATCCTTGG....................................................................................................................................................................19110.0910100000000
......................................................................................TTGTTTGTAGTCCCATCCTT......................................................................................................................................................................20110.0910100000000
.....................................................................................ATTGTTTGTAGTCCCATCCTTGGT...................................................................................................................................................................24110.0910100000000
...........................................CACCACCGAAGTGGGTTTTCAAGG.............................................................................................................................................................................................................24110.0910100000000
............................................................................................................................................................................................................................AGTACGTTACATGTGTGTT.................................19120.0810100000000
........................................................................................................................................................TTGTTACCTGCTTTTCTAGC....................................................................................................20120.0810100000000
..............................A--TTGGCAAGGTCACCACCGAAGTGG.......................................................................................................................................................................................................................25140.0710100000000
.................................TTGGCAAGGTCACCACCGAAGTGGG......................................................................................................................................................................................................................25140.0710100000000
...................................GGCAAGGTCACCACCGAAGTGGG......................................................................................................................................................................................................................23140.0710100000000
..................................TGGCAAGGTCACCACCGAAGTGGGTT....................................................................................................................................................................................................................26140.0710100000000
............................TAA--TTGGCAAGGTCACCACCGAAGTG........................................................................................................................................................................................................................26140.0710100000000
.................................TTGGCAAGGTCACCACCGAAGTGGGTTT...................................................................................................................................................................................................................28140.0710100000000
.TACGGCGGATGGGCAGAG.............................................................................................................................................................................................................................................................18150.0710100000000
............................TAA--TTGGCAAGGTCACCACCGAAGA.........................................................................................................................................................................................................................25160.0610100000000
............................TAA--TTGGCAAGGTCACCACCG.............................................................................................................................................................................................................................21160.0610100000000
droPer2
GTACGGCGGATGGGCAGAGC-CAGCCAATAAA-TTGGCAAGGTCACCACCGAAGTGGGTTTTCAAGGCCAGAAGAAAGTATTGAAATTGTTTGTAGTCCCATCCTGGGCGCAAGACCTATATCTAGGCATAGACTTTTGGTCTCGTTTTAATTTGTTACCTGCTTTTCTAGCC----CATAAAGCATC-CAGTCCAGAGTTATCAGGTTTAGCATTCGATAGTACGTTACATGTGTGTTTGTCGAAGCAGCAGCAAGCTCAGTTAGCAGAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................ATTGTTTGTAGTCCCATCCTGGGC...................................................................................................................................................................2431.003030000
.....................................................................................ATTGTTTGTAGTCCCATCCTGGG....................................................................................................................................................................2330.672020000
.......................................................................................................................................................................CTAGCC----CATAAAGCATC-CAGTCCAG...........................................................................2520.501010000
...........................................................................................................................................................................................................CAGGTTTAGCATTCGATAGTACGT.............................................2420.501010000
.....................................................................................ATTGTTTGTAGTCCCATCCTGG.....................................................................................................................................................................2230.331010000
.....................................................................................ATTGTTTGTAGTCCCATCCTGGGCT..................................................................................................................................................................2530.331010000
.....................................................................................ATTGTTTGTAGTCCCATCCTGGGCG..................................................................................................................................................................2530.331010000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGT..............................23200.255050000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGTC.............................24200.153030000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGTCG............................25200.102020000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGTCGAA..........................27190.051010000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGTCGAAG.........................28190.051010000
..................................................................................................................ACCTATATCTAGGCATAGACTTTTGG....................................................................................................................................26190.051010000
......................................................................................................................ATATCTAGGCATAGACTTTTGGTC..................................................................................................................................24200.051010000
.........................................................................................................................TCTAGGCATAGACTTTTGGTCTCG...............................................................................................................................24200.051010000
.............................................................................................................................................CTCGTTTTAATTTGTTACCTGC.............................................................................................................22200.051010000
.......................................................................................................................TATCTAGGCATAGACTTTTGG....................................................................................................................................21200.051010000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTG...............................22200.051010000
............................................................................................................................................................................................................................AGTACGTTACATGTGTGTTTGTC.............................23200.051010000
............................................................................................................................................TCTCGTTTTAATTTGTTACCT...............................................................................................................21200.051010000
...........................................................................................................................................................................................................................TAGTACGTTACATGTGTGTTTGTCGA...........................26200.051010000
.........................................................................................................................TCTAGGCATAGACTTTTGGTA..................................................................................................................................21200.051010000
.......................................................................................................................TATCTAGGCATAGACTTTTGGTC..................................................................................................................................23200.051010000
droWil2
ATACAGCAGATGGACAATAG-CAAGTGATTC--TAGGAAAGACTCTTACCTCTGTTAGCTTTCAAGGAAATGAAAAACCAATAACTCTTTATGTTGCACCTTCGCTGGCACAGATTCTCTATTTAGGCATAGACTTTTGGAGAGGCTTTAATTTGTTACCGGCCTTTATGGCA----CATAAAGGAAA-CGAACCAACCGTGGCTTGTATTAATCTCGATAGCAAATTAAAGGTGTCATT-----------------------------GAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................AAGTGATTC--TAGGAAAGACTC...................................................................................................................................................................................................................................2130.33100100
......................................................................................................................CTATTTAGGCATAGACTTTTGGAG..................................................................................................................................24110.09101000
droVir3
AAACCGCCCATGGAAAAAACTCAATATATAT--TGAAACGGTTACGCACAGAAATTTATTATGGTGGAAAGGTTAAACGAATTACTTTTTATATAGTCCCTTCTCTTATTCAACCGCTTTGTTTGGGCATAGACCTTTGGTCAACGTTTGAGCTGTTGCCTCCTTGCTTGTTAAGGCCATTGAGGATT-CGCTGCGAGC-----------------------------------TT---T-----------------------------AACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................CAACGTTTGAGCTGTTGCCTCC.............................................................................................................2281.008005000000000010000000000000000000000002000000000000000000000000
...........................................................................................TATAGTCCCTTCTCTTATTCAACCGCT..........................................................................................................................................................2760.835005000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CAACGTTTGAGCTGTTGCCTCCTTGC.........................................................................................................2660.835005000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CAACGTTTGAGCTGTTGCCTC..............................................................................................................2180.756102010000000000000000000000000000000002000000000000000000000000
...........................................................................................................................................................................TAAGGCCATTGAGGATT-CGCTGCGAGC-----------------------------------T.....................................2820.501001000000000000000000000000000000000000000000000000000000000000
...........................................................................................TATAGTCCCTTCTCTTATTCAACC.............................................................................................................................................................2480.504004000000000000000000000000000000000000000000000000000000000000
...........................................................................................TATAGTCCCTTCTCTTATTCAACCGC...........................................................................................................................................................2660.503003000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CAACGTTTGAGCTGTTGCCC...............................................................................................................2080.383001000000000000000000000000000000000001100000000000000000000000
....................................................................................................................................................................TGCTTGTTAAGGCCATTGAGGATT-CGCT...............................................................................2830.331000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................CAACGTTTGAGCTGTTGCCTCCTC...........................................................................................................2460.332002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TGCCTCCTTGCTTGTTAAGGCCATTGAG........................................................................................2830.331000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................TTGTTAAGGCCATTGAGGAT.....................................................................................2030.331000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................CATTGAGGATT-CGCTGCGAGC-----------------------------------......................................2130.331000000100000000000000000000000000000000000000000000000000000000
............................................................................................ATAGTCCCTTCTCTTATTCAACCGCT..........................................................................................................................................................2660.332001000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................CAACGTTTGAGCTGTTGCCTCCT............................................................................................................2360.332001010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TTGAGGATT-CGCTGCGAGC-----------------------------------TT---T-----------------------------AAC2530.331000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................CAACGTTTGAGCTGTTGCCTCCTTG..........................................................................................................2560.332002000000000000000000000000000000000000000000000000000000000000
...........................................................................................TATAGTCCCTTCTCTTATTCAACCGCTT.........................................................................................................................................................2860.332002000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGGGCATAGACCTTTGGTCAACGTT............................................................................................................................2630.331000000000000000000000000000000000000000000000000000000000000001
...........................................................................................TATAGTCCCTTCTCTTATTCAACCG............................................................................................................................................................2580.252001010000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CAACGTTTGAGCTGTTGCCT...............................................................................................................2080.252000100000000000000000000000000000000001000000000000000000000000
...........................................................TATGGTGGAAAGGTTAAACGAATTACT..........................................................................................................................................................................................2780.252000000000010000000000000000100000000000000000000000000000000000
...........................................................TATGGTGGAAAGGTTAAACGA................................................................................................................................................................................................2180.252000000001000000000000000000000000000000000000000000000000000010
.............................................................................................................................................CAACGTTTGAGCTGTTGCC................................................................................................................1980.252001001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CAACGTTTGAGCTGTTGCCTCCTTGCCC.......................................................................................................2860.171100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TCAACGTTTGAGCTGTTGCCTCCT............................................................................................................2460.171000000000000000000000000000000000000001000000000000000000000000
.................................................................................................CCCTTCTCTTATTCAACCGCT..........................................................................................................................................................2160.171001000000000000000000000000000000000000000000000000000000000000
.........................................................................................TATATAGTCCCTTCTCTTATTCAACCGC...........................................................................................................................................................2860.171000000000000000000000000100000000000000000000000000000000000000
...........................................................................................TATAGTCCCTTCTCTTATTCAACCGCTC.........................................................................................................................................................2860.171001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TCAACGTTTGAGCTGTTGCCTCCTT...........................................................................................................2560.171000010000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CAACGTTTGAGCTGTTGCCTCCTT...........................................................................................................2460.171001000000000000000000000000000000000000000000000000000000000000
............................................................................................ATAGTCCCTTCTCTTATTCAACCGC...........................................................................................................................................................2560.171001000000000000000000000000000000000000000000000000000000000000
..........................................TACGCACAGAAATTTATTATGGTGG.............................................................................................................................................................................................................2570.141000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................TGGTCAACGTTTGAGCTGTTGCCTCC.............................................................................................................2680.131000000000000000000000000001000000000000000000000000000000000000
...........................................................TATGGTGGAAAGGTTAAACGAATTACTT.........................................................................................................................................................................................2880.131000000000000000000000000000000000000100000000000000000000000000
............................................CGCACAGAAATTTATTATGGTGGAAAG.........................................................................................................................................................................................................2780.131000000000000000000000000000000000000001000000000000000000000000
............................................................................................ATAGTCCCTTCTCTTATTCAACC.............................................................................................................................................................2380.131001000000000000000000000000000000000000000000000000000000000000
............................................CGCACAGAAATTTATTATGGTGGAAA..........................................................................................................................................................................................................2680.131000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................TCAACGTTTGAGCTGTTGCCTC..............................................................................................................2280.131000000000000000000000000000000000000001000000000000000000000000
............................................CGCACAGAAATTTATTATGGTGGAA...........................................................................................................................................................................................................2580.131000000000000000000000000001000000000000000000000000000000000000
...............................................................GTGGAAAGGTTAAACGAATTACTTTT.......................................................................................................................................................................................2680.131000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................CAACGTTTGAGCTGTTGC.................................................................................................................1880.131000010000000000000000000000000000000000000000000000000000000000
.................................................................................TTACTTTTTATATAGTCCCTTCTCTT.....................................................................................................................................................................26150.071000000000000000000000000001000000000000000000000000000000000000
droMoj3
GTACTGCAGATGGCAAGGCA-CAGAATATAA--TAGGCAAAATCACTACAGAAATCAAATTTAAAAATGAAGCTAGAATGTTGACATTTTATATAGTACCCTCCTTATCTCAAGATTTATATTTAGGGATAGATTTTTGGACCCAATTTTATT-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................TGTTGACATTTTATATAGTACCCTCC........................................................................................................................................................................2611.001100000
...........................................CACTACAGAAATCAAATTTAAAAATGAAG........................................................................................................................................................................................................2911.001100000
...........................................CACTACAGAAATCAAATTTAAAAATGA..........................................................................................................................................................................................................2711.001000010
........................................................................................TTATATAGTACCCTCCTTATCTCAAGATT...........................................................................................................................................................2911.001000010
.........................................................................TAGAATGTTGACATTTTATATAGT...............................................................................................................................................................................2411.001100000
........................................................................................TTATATAGTACCCTCCTTATCTCAAGAT............................................................................................................................................................2811.001100000
.....................................................................................ATTTTATATAGTACCCTCCTTATC...................................................................................................................................................................2411.001000010
......................................AAAATCACTACAGAAATCAAATTT..................................................................................................................................................................................................................2420.501100000
droGri2
GTTCGGCAGATTGCCCTAAA-CAACAAATTA--TTGGTAGGATGATGACGCCAGTTAGTTTTCGCGGTGAGACTAAGCCATTGTGTATTTATATAGTACCGTCTTTGTCTCAAAACTTATATTTCGGCATAGATTTTTGGCGTAGTTTTAATTCAGTGTCCTTGTATGTTATT----CATAAA-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GTACTGCCGATGGAAATAAG-CAACAAATAA--TTGGTAAATTTAAGACATTGATAGAATATAAAGGAATGAAAAGGGAATTAGAATTTCATATAATCCCCTCTTTGAGGCAAGATATTTATTTAGGAATAGATTTTTGGACAGCTTACGAGCTGTTGCCGCCTACCCTAGCTA----TC-------------TCAGAGATCTCAGGA---------GATGCGGAGCTGCATTCGT---TATCAAAAGGGCAGCAACTTAGATTAGAAAAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................GAATAGATTTTTGGACAGCTTACGAGC.......................................................................................................................2770.715140000
..............................................................................................................................GAATAGATTTTTGGACAGCTTACGAG........................................................................................................................2670.292011000
.................................................................................................................................................................................................................................................TCAAAAGGGCAGCAACTTAGATT........2340.251010000
......................................................................................................................................................................................................GATCTCAGGA---------GATGCGGAGCTGC..........................................2340.251100000
........................................................................................................................................................................................................TCTCAGGA---------GATGCGGAGCTGCAT........................................2340.251010000
......................................................................................................................................................................................................GATCTCAGGA---------GATGCGGAGCTGCAT........................................2540.251000010
...............................................................................................................................AATAGATTTTTGGACAGCTTACGAG........................................................................................................................2570.141100000
...............................................................................................................................AATAGATTTTTGGACAGCTTACGAGC.......................................................................................................................2670.141100000
.................................................................................................................................TAGATTTTTGGACAGCTTACGAGC.......................................................................................................................2470.141010000
...................................................................................................................................................................................................AGAGATCTCAGGA---------GATGCGGAGC.............................................2390.111010000
...................................................................................................................................................................................C-------------TCAGAGATCTCAGGA---------GATGCGG................................................23110.091100000
.............................................................................................................................................................................A----TC-------------TCAGAGATCTCAGGA---------GATGCGG................................................25110.091100000
...................................................................................................................................................................................................AGAGATCTCAGGA---------GATGCGGA...............................................21120.081100000
......................................................................................................................................................................CCTAGCTA----TC-------------TCAGAGATCTCA...................................................................22120.081100000
...................................................................................................................................................................................................AGAGATCTCAGGA---------GATGCG.................................................19120.081100000
.........................................................................................................................TTTAGGAATAGATTTTTGGACAGC...............................................................................................................................24200.051100000
..........................................................................................................................TTAGGAATAGATTTTTGGACAGC...............................................................................................................................23200.051000001
.........................................................................................................................TTTAGGAATAGATTTTTGGACAGCTT.............................................................................................................................26200.051010000
droBip1
GTACTGCCGATGGAAACAAG-CAACAAATAA--TAGGTAAATTTAAGACAGAGATAGAATTTAAAGGAATAAAAAGAGAATTAGAATTTCATATAATCCCCTCTCTAAGGCAAGATATTTACTTAGGAATAGATTTTTGGACAGCTTACGAACTGTTGCCGCCGACCCTAGCTA----TC-------------TCAGAGATCTCAGGA---------GATGCGCAGGAGCACTTGT---TATCGAAATGGCAGCAACTTAAACTAGAAAAAGSizeHit CountTotal NormTotal
No Reads
droKik1
GTACCGCAGATGGTGCCAAA-CAGCCAATTA--TAGGCCGACTCAGCACAGAGGTTTGCTTCCAAGGAGAAATGAGGGAGTTAAAGTTTTACGTTGTACCTTCGTTGCAGCAAGACCTTTATTTAGGCATAGAGTTTTGGAGGAGCTATAATTTGTTGCCAGTGTTTCTAGCG----AACCAAATTCTTAAGCCTAGTGT------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCACGGCGGATGGCCAGTAT-CAAAGTATTG--TTGGAAAACTTTCTTTAGAAGTCACTTATCGAGGAACAACAAAGCGCTTCACTTTATATATTGTCCCTTCACTTGTTCAGTCGTTGTATTTAGGCATTGATTTTTGGATCGCATTTGATATGTTACCTTCGGGTTTGTCAG----TCCA------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCACGGCAGATGGTCAGTTA-CAGACTATAA--TTGGTAAACTTAATGTAGACGTCACTTATCGAGAGACAACAAAGTGTCTAAATTTGTACATCGTACCGTCACTTGTTCAGTCGTTATATTTAGGCATTGACTTTTGGACTGCATTTGATATATGTCCTTCTGGATTGTCAG----TC--------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCACAGCAGATGTAACAAGT-CAGTCAATCA--TCGGGAGGATCACCACAGCAGTTTGTTTTCGAGGAGAGACAAAAGAATTAAAGTTTTACGTTGTACCATCACTGCAGCAGGACCTTTACTTAGGGATCGAGTTTTGGAGAAGTTATAACCTTCATCCAGTTTTCCTTGCA----GATAAA-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GTACAGCTGATGGTAAAAGA-CAACAAGTCG--TTGGACGTTTTCGTACTCCAGTCCAATACAAGGGGGTCGTCAAAGATTTGGATCTCAATATAATACCATCGTTGAGCCAAGACCTATATTTAGGGATTGACTTTTGGTCCAAGTTTGGTCTGTT-------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCACTGCCGATGGTGTCAAT-CAGGCAATCG--TTGGGCGAATAACCACTTCTGTGACGTTTCGAGGCGAAACAAAACAATTAACATTCTACATTGTACCATCATTACAGCAAGATTTGTATCTAGGAATTACATTTTGGACTAGTTATAATCTTCTGCCGGTATTTCTTGCT----AATCAGTCATGTTAGCACAGTGTT-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AAACAGCAGACGGTCAATCC-CAACCGATAA--GTGGTTGACTATCTACGGAAGTCTCCTTCCGGAGCGATAAGAAAACATTAATCTTCAATGTAGTACCATCTCTAGCAGAAGAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSim2
AAACTGCAGATGGAAAGTCC-CAGCGGGTTA--TGGGCAAGCTGACCACAGAAATATTCTTTAGGAACAAGTCGGAGGAAATTAATTTGTATATCGTTCCATCGTTGTCTCAAAATCTTTACCTAGGAATTGATTTCTGGATCAGGTTTGATTTGCTACCTTCGTT----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TAACAGCCGACGGACAATCC-CAAAGAATTA--CCGGCAGAGTAACCACTGAAGTGTCCTTTCGGAACGAGAATAAAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTACAGCAGACGCGGCTAAA-CAGCCAATTA--TTGGAAAAATTACTACCGATGTCTGTTTCCAAGGAGAAACAAGGGAGTTAACTTTTTATGAAGTACCTTCCTTGCAGCAAGACCTTTATTTAGCCATCGAATTTTGGAGGACCTATAATTTGTTGCCAGTGTTCCTAGCA----AACCAAACTCT------------------------------------------------------------------------------CCAAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTACAGCAGAGGGCAAGAAG-CAACCCATTTTTTATCACGTATTATCACCTTCAAATCCTTCAGAGGTGCGTCAAAGCTTCTTTGCTTATGGATAGTCCCAACTTTACTTCACGATTTTTATCTGGGAAAAAATTTTTGGAATAGTTTTAAATTATTGCCTGATTTTATAGCG----AACCAAAGTTT-------------------------------------------------------------------------ATCTATTACAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 04:25 AM