ID:

dps_2375

 Coordinate:

Unknown_singleton_3835:1854-2004 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.6 -16.9 -16.7

Flybase annnotation

exon [dpse_GLEANR_16494:2]; CDS [Dpse\GA25163-cds]; intron [Dpse\GA25163-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-3_DPer-I-intLTRGypsy+
Gypsy-3_DPer-I-intLTRGypsy+
Gypsy-3_DPer-I-intLTRGypsy+
mature
star
  1. dps_2375  Unknown_singleton_3835:1925-1949 +
  2. Unknown_singleton_3835:6155-6179 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTACGGCGGATGGGCAGAGCCAACCAATAATTGGCAAGGTCACCACCGAAGTGGGTTTTCACCGAGTACCGAGCCAGCGAATGAAGCAAGCCCAGGCTTGGCTCAAATGGCACAGGCGTTGACGGACGCTATGGTATCAAGACTGCGTAGGTGATCGCACCGTATTTTGTTATGGCTGTGGCAAACGGGAAACGTATAAACCGTATAATACGTCGTGCTCTAGGTACAACGATCCAAAAAACTCGTCAAGC
*************************************************************************************************************************.((...((((((((..((.(((...(((((((....)))).)))...))).))))))))))...))..************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 M059
embryo
 GSM343916
embryo
...........................TAATTGGCAAGGTCACCACCGAAG........................................................................................................................................................................................................ 24 0 16 1.19 19 19 0 0 0 0 0
........................................................................................................................................................................GTTATGGCTGTGGCAAACGGG.............................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................TGATCGCACCGTATTTTGTTATGGC........................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................GTTATGGCTGTGGCAAACGGGAAT........................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................ACGGACGCTATGGTATCAAGACTGC......................................................................................................... 25 0 2 1.00 2 2 0 0 0 0 0
......................................................................................................TCAAATGGCACAGGCGTTGACGGAC............................................................................................................................ 25 0 8 0.75 6 3 1 1 0 1 0
..................................................................................................TGGCTCAAATGGCACAGGCGTTG.................................................................................................................................. 23 0 8 0.50 4 4 0 0 0 0 0
..................................................................................................TGGCTCAAATGGCACAGGCGTT................................................................................................................................... 22 0 8 0.50 4 4 0 0 0 0 0
............................................................................................................................................................................................GAAACGTATAAACCGTATAATACGTCG.................................... 27 0 4 0.50 2 0 2 0 0 0 0
......................................................................................................TCAAATGGCACAGGCGTTGACGGA............................................................................................................................. 24 0 9 0.44 4 0 0 4 0 0 0
..................................................................................................TGGCTCAAATGGCACAGGCGTTGA................................................................................................................................. 24 0 8 0.38 3 3 0 0 0 0 0
.........................................................................................................................ACGGACGCTATGGTATCAAGACT........................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
...................................................TGGGTTTTCACCGAGTACCGAGC................................................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................ACGGACGCTATGGTATCAAGACTG.......................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................TGACGGACGCTATGGTATCAAGAC............................................................................................................ 24 0 3 0.33 1 1 0 0 0 0 0
..........................................................................................................................CGGACGCTATGGTATCAAGACT........................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
.......................................................TTTTCACCGAGTACCGAGCCAGCGAAT......................................................................................................................................................................... 27 0 3 0.33 1 0 1 0 0 0 0
....................................................................................................................................................................................................TAAACCGTATAATACGTCGTGCTCTAGG........................... 28 0 3 0.33 1 1 0 0 0 0 0
...................................................................................................................................................................................................ATAAACCGTATAATACGTCGTGC................................. 23 0 3 0.33 1 1 0 0 0 0 0
..........................................................TCACCGAGTACCGAGCCAGCGAAT......................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
......................................................................................................TCAAATGGCACAGGCGTTGACGG.............................................................................................................................. 23 0 9 0.33 3 3 0 0 0 0 0
...........................................................................................................TGGCACAGGCGTTGACGGACGCTA........................................................................................................................ 24 0 13 0.31 4 4 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCGAA......................................................................................................................................................................................................... 23 0 16 0.25 4 4 0 0 0 0 0
.................................................................................................TTGGCTCAAATGGCACAGGCGTTGAC................................................................................................................................ 26 0 8 0.25 2 2 0 0 0 0 0
........................................................................................................................................................................................................................GCTCTAGGTACAACGATCC................ 19 0 4 0.25 1 1 0 0 0 0 0
.....................................................................................................CTCAAATGGCACAGGCGTTGACGGAC............................................................................................................................ 26 0 8 0.25 2 2 0 0 0 0 0
............................AATTGGCAAGGTCACCACCGAAG........................................................................................................................................................................................................ 23 0 16 0.25 4 4 0 0 0 0 0
.............................................................................................................................................................................................................TAATACGTCGTGCTCTAGGTA......................... 21 0 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................................................GGTTATCGCACCGGATTGT................................................................................... 19 3 10 0.20 2 0 0 0 2 0 0
...........................................................................................................TGGCACAGGCGTTGACGGACGCT......................................................................................................................... 23 0 13 0.15 2 2 0 0 0 0 0
.........................................................................................................AATGGCACAGGCGTTGACGGACG........................................................................................................................... 23 0 14 0.14 2 0 2 0 0 0 0
...........................................................................................................TGGCACAGGCGTTGACGGACG........................................................................................................................... 21 0 14 0.14 2 2 0 0 0 0 0
..........................................................................CAGCGAATGAAGCAAGCCCAGG........................................................................................................................................................... 22 0 15 0.13 2 2 0 0 0 0 0
..........................................................................CAGCGAATGAAGGAAGCCCAGG........................................................................................................................................................... 22 1 15 0.13 2 2 0 0 0 0 0
..........................................................................CAGCGAATGAAGCAAGCCCAGGCT......................................................................................................................................................... 24 0 15 0.13 2 2 0 0 0 0 0
.........................................................................CCAGCGAATGAAGCAAGCCCAGGCT......................................................................................................................................................... 25 0 15 0.13 2 2 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCGAAGT....................................................................................................................................................................................................... 25 0 16 0.13 2 2 0 0 0 0 0
...............................................................................................GCTTGGCTCAAATGGCACAGGCGTTG.................................................................................................................................. 26 0 8 0.13 1 1 0 0 0 0 0
......................................................................................................TCAAATGGCACAGGCGTTGACGGACGC.......................................................................................................................... 27 0 8 0.13 1 1 0 0 0 0 0
..................................................................................................TGGCTCAAATGGCACAGGCGTTGACG............................................................................................................................... 26 0 8 0.13 1 1 0 0 0 0 0
..........................................................................................CCCAGGCTTGGCTCAAATGGCACAGGCG..................................................................................................................................... 28 0 8 0.13 1 1 0 0 0 0 0
..................................................................................................TGGCTCAAATGGCACAGGCGTTCC................................................................................................................................. 24 2 8 0.13 1 0 0 0 1 0 0
...........................TAATTGGCAAGGTCACCACCGA.......................................................................................................................................................................................................... 22 0 16 0.13 2 2 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACC............................................................................................................................................................................................................ 20 0 17 0.12 2 2 0 0 0 0 0
......................................................................................................TCAAATGGCACAGGCGTTG.................................................................................................................................. 19 0 9 0.11 1 1 0 0 0 0 0
.....................................................................................................CTCAAATGGCACAGGCGTTG.................................................................................................................................. 20 0 9 0.11 1 1 0 0 0 0 0
....................................................................................................GCTCAAATGGCACAGGCGTTG.................................................................................................................................. 21 0 9 0.11 1 1 0 0 0 0 0
..................................................................................................TGGCTCAAATGGCACAGG....................................................................................................................................... 18 0 10 0.10 1 1 0 0 0 0 0
..........................................................................................CCCAGGCTTGGCTCAAATGGCACAG........................................................................................................................................ 25 0 10 0.10 1 1 0 0 0 0 0
..........................................................................................CCCAGGCTTGGCTCAAATGG............................................................................................................................................. 20 0 10 0.10 1 0 0 0 0 0 1
..........................................................................................CCCAGGCTTGGCTCAAATGGC............................................................................................................................................ 21 0 10 0.10 1 1 0 0 0 0 0
...............................................................................................GCTTGGCTCAAATGGCACAGG....................................................................................................................................... 21 0 10 0.10 1 1 0 0 0 0 0
...........................................................................................CCAGGCTTGGCTCAAATGGCACAGG....................................................................................................................................... 25 0 10 0.10 1 1 0 0 0 0 0
......................................................................................CAAGCCCAGGCTTGGCTCAAATG.............................................................................................................................................. 23 0 10 0.10 1 1 0 0 0 0 0
.................................................................................TGAAGCAAGCCCAGGCTTGGCTC................................................................................................................................................... 23 0 10 0.10 1 1 0 0 0 0 0
.................................................................................................TTGGCTCAAATGGCACAGG....................................................................................................................................... 19 0 10 0.10 1 1 0 0 0 0 0
..........................................................................................CCCAGGCTTGGCTCAAATGGCAC.......................................................................................................................................... 23 0 10 0.10 1 1 0 0 0 0 0
........................................................................................................................................................................GTTATGACGGTGGTAAACG................................................................ 19 3 10 0.10 1 1 0 0 0 0 0
........................................................................................AGCCCAGGCTTGGCTCAAATGGCACA......................................................................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0
.........................................................................CCAGCGAATGAAGCAAGCCCAGGCTT........................................................................................................................................................ 26 0 12 0.08 1 1 0 0 0 0 0
...........................................................................AGCGAATGAAGGAAGCCCAGGCTTGG...................................................................................................................................................... 26 1 12 0.08 1 1 0 0 0 0 0
...........................................................................AGCGAATGAAGGAAGCCCAGGCTTGGC..................................................................................................................................................... 27 1 12 0.08 1 0 0 0 1 0 0
.................................................................................TGAAGCAAGCCCAGGCTTGGC..................................................................................................................................................... 21 0 13 0.08 1 1 0 0 0 0 0
............................................................................................................GGCACAGGCGTTGACGGACGCTA........................................................................................................................ 23 0 13 0.08 1 1 0 0 0 0 0
.......................................................................................................CAAATGGCACAGGCGTTGACGGACGCTA........................................................................................................................ 28 0 13 0.08 1 1 0 0 0 0 0
...........................................................................................................TGGCACAGGCGTTGACGGACGCTAT....................................................................................................................... 25 0 13 0.08 1 1 0 0 0 0 0
....................................................................................................................CGTTGACGGACGCTATGG..................................................................................................................... 18 0 13 0.08 1 1 0 0 0 0 0
....................................................................................................................................GGTATCAAGACTGCGTAGGTGATCGCAC........................................................................................... 28 0 14 0.07 1 1 0 0 0 0 0
..............................TTGGCAAGGTCACCACCGAAGTGGG.................................................................................................................................................................................................... 25 0 14 0.07 1 1 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCGAAGTG...................................................................................................................................................................................................... 26 0 14 0.07 1 1 0 0 0 0 0
..............................TTGGCAAGGTCACCACCGAAGTGGGTTT................................................................................................................................................................................................. 28 0 14 0.07 1 1 0 0 0 0 0
......................................................................................................................................TATCAAGACTGCGTAGGTGATCGCACCG......................................................................................... 28 0 14 0.07 1 0 0 1 0 0 0
.....................................................................CGAGCCAGCGAATGAAGCAAGCCCAGG........................................................................................................................................................... 27 0 14 0.07 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................AACGATCCAAAAAACTCGTCAAGC 24 0 14 0.07 1 1 0 0 0 0 0
......................................................................................................................................TATCAAGACTGCGTAGGTGATCGCAC........................................................................................... 26 0 14 0.07 1 1 0 0 0 0 0
.....................................................................CGAGCCAGCGAATGAAGCAAGCC............................................................................................................................................................... 23 0 14 0.07 1 1 0 0 0 0 0
.............................ATTGGCAAGGTCACCACCGAAGTGG..................................................................................................................................................................................................... 25 0 14 0.07 1 1 0 0 0 0 0
...........................................................................................................TGGCACAGGCGTTGACGGACGCAA........................................................................................................................ 24 1 14 0.07 1 1 0 0 0 0 0
...............................TGGCAAGGTCACCACCGAAGTGGGTT.................................................................................................................................................................................................. 26 0 14 0.07 1 1 0 0 0 0 0
................................GGCAAGGTCACCACCGAAGTGGG.................................................................................................................................................................................................... 23 0 14 0.07 1 1 0 0 0 0 0
...........................................................................AGCGAATGAAGCCAGCCCAG............................................................................................................................................................ 20 1 15 0.07 1 1 0 0 0 0 0
..........................................................................CAGCGAATGAAGCAAGCCCAGT........................................................................................................................................................... 22 1 15 0.07 1 1 0 0 0 0 0
..........................................................................CAGCGAATGAAGCCAGCCCAGG........................................................................................................................................................... 22 1 15 0.07 1 1 0 0 0 0 0
.......................................................................................................CAAATGGCACAGGCGTTGAC................................................................................................................................ 20 0 15 0.07 1 0 0 0 1 0 0
........................................................................................................AAATGGCACAGGCGTTGACGA.............................................................................................................................. 21 1 15 0.07 1 1 0 0 0 0 0
........................................................................................................................................TCAAGACTGCGTAGGTGATCGCAC........................................................................................... 24 0 15 0.07 1 0 0 0 0 1 0
.TACGGCGGATGGGCAGAG........................................................................................................................................................................................................................................ 18 0 15 0.07 1 1 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCGAAGA....................................................................................................................................................................................................... 25 1 16 0.06 1 1 0 0 0 0 0
...........................TAATTGGCAAGGTCACCACCG........................................................................................................................................................................................................... 21 0 16 0.06 1 1 0 0 0 0 0
.....................................................................................................................................GTATCAAGATTGCGAAGGTGG................................................................................................. 21 3 16 0.06 1 1 0 0 0 0 0
..............................................................................GAATGAAGCAAGCCCAGG........................................................................................................................................................... 18 0 17 0.06 1 1 0 0 0 0 0
.......................................................................................................................................ATCAAGATTGCGAAGGTG.................................................................................................. 18 2 18 0.06 1 1 0 0 0 0 0
............................................................................................................GGCAAAGGCGATGAAGGACG........................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CATGCCGCCTACCCGTCTCGGTTGGTTATTAACCGTTCCAGTGGTGGCTTCACCCAAAAGTGGCTCATGGCTCGGTCGCTTACTTCGTTCGGGTCCGAACCGAGTTTACCGTGTCCGCAACTGCCTGCGATACCATAGTTCTGACGCATCCACTAGCGTGGCATAAAACAATACCGACACCGTTTGCCCTTTGCATATTTGGCATATTATGCAGCACGAGATCCATGTTGCTAGGTTTTTTGAGCAGTTCG
**************************************************************.((...((((((((..((.(((...(((((((....)))).)))...))).))))))))))...))..************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 GSM343916
embryo
 V112
male body		 SRR902011
testis
 M059
embryo
 GSM444067
head
.........................................................................................................TTACCGTGTCCGCAACTGCCTGCGAT........................................................................................................................ 26 0 13 6.69 87 86 0 0 0 0 1 0
..........................................................................................................TACCGTGTCCGCAACTGCCTGCGAT........................................................................................................................ 25 0 13 2.08 27 27 0 0 0 0 0 0
............................................................................................................CCGTGTCCGCAACTGCCTGCGAT........................................................................................................................ 23 0 13 1.92 25 20 0 2 0 0 3 0
..............................................................................................................................................................................................................................CCATGTTGCTAGGTTTTTTGAGCAGT... 26 0 3 1.67 5 3 2 0 0 0 0 0
...........................................................................................................ACCGTGTCCGCAACTGCCTGCGAT........................................................................................................................ 24 0 13 1.31 17 15 0 1 1 0 0 0
................................................................................................................................................CGCATCCACTAGCGTGGCATAAAACAAT............................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
CATGCCGCCTACCCGTCTCGGTTAT.................................................................................................................................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................CCACTAGCGTGGCATAAAACAAT............................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.....................TTGGTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................GTCCGCAACTGCCTGCGATACCAT................................................................................................................... 24 0 3 1.00 3 3 0 0 0 0 0 0
...GCCGCCTACCCGTCTCGGTTAT.................................................................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................CGTGTCCGCAACTGCCTGCGAT........................................................................................................................ 22 0 14 0.86 12 10 0 0 2 0 0 0
.........................................................................................CGGGTCCGAACCGAGTTTACCGT........................................................................................................................................... 23 0 10 0.70 7 7 0 0 0 0 0 0
.............................................................................................................................................................................................................................TCCATGTTGCTAGGTTTTTTGAGCAGT... 27 0 3 0.67 2 2 0 0 0 0 0 0
....................................................................................................CGAGTTTACCGTGTCCGCAACTGCCT............................................................................................................................. 26 0 9 0.67 6 6 0 0 0 0 0 0
.............................................................GGCTCATGGCTCGGTCGCTTACT....................................................................................................................................................................... 23 0 5 0.60 3 3 0 0 0 0 0 0
.........................................................................................................TTACCGTGTCCGCAACTGCCTGCGA......................................................................................................................... 25 0 13 0.54 7 7 0 0 0 0 0 0
.......................................................................................................................................................................................TTGCCCTTTGCATATTTGGCATAT............................................ 24 0 4 0.50 2 2 0 0 0 0 0 0
........................................................................................TCGGGTCCGAACCGAGTTTACCGT........................................................................................................................................... 24 0 10 0.50 5 5 0 0 0 0 0 0
..........................................................................................GGGTCCGAACCGAGTTTACCGTGT......................................................................................................................................... 24 0 10 0.50 5 5 0 0 0 0 0 0
..............................................................................................................................GCGATACCATAGTTCTGACGCATCCACT................................................................................................. 28 0 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................GATACCATAGTTCTGACGCATCCACT................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0
.................................................................CATGGCTCGGTCGCTTACTTCGT................................................................................................................................................................... 23 0 5 0.40 2 2 0 0 0 0 0 0
...............................................................CTCATGGCTCGGTCGCTTACTTCGTT.................................................................................................................................................................. 26 0 5 0.40 2 2 0 0 0 0 0 0
........................................................................................................TTTACCGTGTCCGCAACTGCCTGCGAT........................................................................................................................ 27 0 13 0.38 5 5 0 0 0 0 0 0
................................................................................................................GTCCGCAACTGCCTGCGATACCATAG................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0 0 0
.............................................GGCTTCACCCAAAAGTGGCTCATGGCT................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................TTGGCATATTATGCAGCACGAGATCCAT......................... 28 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................CATGTTGCTAGGTTTTTTGAGCAGT... 25 0 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................................GCAACTGCCTGCGATACCATAGT................................................................................................................ 23 0 3 0.33 1 0 0 1 0 0 0 0
................................................................................................................................................................................................................................ATGTTGCTAGGTTTTTTGAGCAGT... 24 0 3 0.33 1 0 0 0 0 1 0 0
................................................................................................................GTCCGCAACTGCCTGCGATACCATAGT................................................................................................................ 27 0 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................GCAACTGCCTGCGATACCATAGTTCT............................................................................................................. 26 0 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................GCAATTGCCTTCGATACCATAGG................................................................................................................ 23 3 3 0.33 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................TTGGCATATTATGCAGCACGAGA.............................. 23 0 3 0.33 1 1 0 0 0 0 0 0
..............................................................................................................GTGTCCGCAACTGCCTGCGATACCAT................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................CTGCCTGCGATACCATAGTTCTGA........................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0 0
.............................................GGCTTCACCCAAAAGTGGCTCAT....................................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................ATTTGGCATATTATGCAGCACGAG............................... 24 0 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................CGTGTCCGCAACTGCCTGCGATACCAT................................................................................................................... 27 0 3 0.33 1 0 0 0 1 0 0 0
........................................................................................TCGGGTCCGAACCGAGTTTACCGTGT......................................................................................................................................... 26 0 10 0.30 3 3 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACGAGATCCATGTTGCTAGGTTTTTT.......... 26 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCATGTTGCTAGGTTTTTTGAGCAG.... 25 0 4 0.25 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................GCAGCACGAGATCCATGTTGCTAGGTT.............. 27 0 4 0.25 1 1 0 0 0 0 0 0
...................................................................................................CCGAGTTTACCGTGTCCGCAACTGCCT............................................................................................................................. 27 0 8 0.25 2 2 0 0 0 0 0 0
.................................................................................................AACCGAGTTTACCGTGTCCGCAACTGCCT............................................................................................................................. 29 0 8 0.25 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................................CACGAGATCCATGTTGCTAGGTTTT............ 25 0 4 0.25 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................GCAGCACGAGATCCATGTTGCTAGGT............... 26 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................................................................................CGACACCGTTTGCCCTTTGCATATTT................................................... 26 0 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................................................................TGCCCTTTGCATATTTGGCATATTAT......................................... 26 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................GTGTCCGCAACTGCCTGCGAT........................................................................................................................ 21 0 14 0.21 3 3 0 0 0 0 0 0
.................................................................CATGGCTCGGTCGCTTACTT...................................................................................................................................................................... 20 0 5 0.20 1 1 0 0 0 0 0 0
................................................................TCATGGCTCGGTCGCTTACTTCCTTC................................................................................................................................................................. 26 1 5 0.20 1 1 0 0 0 0 0 0
..............................................................GCTCATGGCTCGGTCGCTTACT....................................................................................................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0
..........................................................................................GGGTCCGAACCGAGTTTACCGT........................................................................................................................................... 22 0 10 0.20 2 2 0 0 0 0 0 0
........................................................................................TCGGGTCCGAACCGAGTTCACCGTGT......................................................................................................................................... 26 1 10 0.20 2 2 0 0 0 0 0 0
.............................................................GGCTCATGGCTCGGTCGCTTACTT...................................................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0
.........................................................................................CGGGTCCGAACCGAGTTTACCGTGT......................................................................................................................................... 25 0 10 0.20 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................TTGGCATATTATGCAGCACGAGATCCAC......................... 28 1 5 0.20 1 1 0 0 0 0 0 0
.................................................................CATGGCTCGGTCGCTTACTTCGTT.................................................................................................................................................................. 24 0 5 0.20 1 1 0 0 0 0 0 0
..................................................................ATGGCTCGGTCGCTTACTTCGT................................................................................................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTTGCTAGGTTTTTTGAGCAGT... 22 0 14 0.14 2 2 0 0 0 0 0 0
..................................GTTCCAGTGGTGGCTTCACCCAAAAGT.............................................................................................................................................................................................. 27 0 14 0.14 2 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCTAGGTTTTTTGAGCAGT... 20 0 14 0.14 2 1 0 0 1 0 0 0
................................................................................................GAACCGAGTTTACCGTGTCCGCAACT................................................................................................................................. 26 0 8 0.13 1 1 0 0 0 0 0 0
......................................................................................................AGTTTACCGTGTCCGCAACTGCCTG............................................................................................................................ 25 0 8 0.13 1 1 0 0 0 0 0 0
..............................................................................................CCGAACCGAGTTTACCGTGTCCGCAAC.................................................................................................................................. 27 0 8 0.13 1 1 0 0 0 0 0 0
........................GTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 21 0 16 0.13 2 2 0 0 0 0 0 0
..............................................................................................CCGAACCGAGTTTACCGTGTCCGCAACT................................................................................................................................. 28 0 8 0.13 1 1 0 0 0 0 0 0
...............................................................................................CGAACCGAGTTTACCGTGTCCGCAAC.................................................................................................................................. 26 0 8 0.13 1 1 0 0 0 0 0 0
....................................................................................................CGAGTTTACCGTGTCCGCAACTGCC.............................................................................................................................. 25 0 9 0.11 1 1 0 0 0 0 0 0
..........................................................................................GGGTCCGAACCGAGTTTAC.............................................................................................................................................. 19 0 10 0.10 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................GGTTGACCTTAGCATATTTG.................................................. 20 3 10 0.10 1 1 0 0 0 0 0 0
.........................................................................................CGGGTCCGAACCGAGTTCACCGT........................................................................................................................................... 23 1 10 0.10 1 1 0 0 0 0 0 0
.....................................................................................CGTTCGGGTCCGAACCGAGTTTAC.............................................................................................................................................. 24 0 10 0.10 1 0 0 1 0 0 0 0
......................................................................................CTTCGGGTCCGAACCGAGTTTACCGT........................................................................................................................................... 26 1 10 0.10 1 1 0 0 0 0 0 0
......................................................................................GTTCGGGTCCGAACCGAGTTTACCGT........................................................................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0 0
......................................................................................GTTCGGGTCCGAACCGAGTTTAC.............................................................................................................................................. 23 0 10 0.10 1 1 0 0 0 0 0 0
......................................................................................GGTCGGGTCCGAACCGAGTTTACCGT........................................................................................................................................... 26 1 10 0.10 1 1 0 0 0 0 0 0
.......................................................................................TTCGGGTCCGAACCGAGTTTACCGTGT......................................................................................................................................... 27 0 10 0.10 1 1 0 0 0 0 0 0
.........................................................................................CGGGTCCGAACCGAGTTTAC.............................................................................................................................................. 20 0 10 0.10 1 1 0 0 0 0 0 0
..........................................................................GTCGCTTACTTCGTTCGGGTCCGAAC....................................................................................................................................................... 26 0 12 0.08 1 1 0 0 0 0 0 0
...........................................................................................................ACCGTGTCCGCAACTGCCTGCGATAC...................................................................................................................... 26 0 12 0.08 1 1 0 0 0 0 0 0
...........................................................................................................ACAGTGTCCGCAACTGCCTGCGAT........................................................................................................................ 24 1 13 0.08 1 1 0 0 0 0 0 0
............................................................................................................CCGTGTCCGCAACTGCCTGCGA......................................................................................................................... 22 0 13 0.08 1 1 0 0 0 0 0 0
......................................................................................GTTCGGGTCCGAACCGGGTTGTC.............................................................................................................................................. 23 3 13 0.08 1 0 0 1 0 0 0 0
..........................................................................................................AACCGTGTCCGCAACTGCCTGCGAT........................................................................................................................ 25 1 13 0.08 1 1 0 0 0 0 0 0
.................................................................................................................TTCGCAACTGCGTGCGATTCC..................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 1
.............................................................................................................CGTGTCCGCAACTGCCTGCGATACC..................................................................................................................... 25 0 13 0.08 1 1 0 0 0 0 0 0
..........................................................................................................TACCGTATCCGCAACTGCCTGCGAT........................................................................................................................ 25 1 13 0.08 1 1 0 0 0 0 0 0
...........................................................................................................TCCGTGTCCGCAACTGCCTGCGAT........................................................................................................................ 24 1 13 0.08 1 1 0 0 0 0 0 0
.........................................................................................................TTACCGTGTCCGCAACTGCCTGCG.......................................................................................................................... 24 0 14 0.07 1 1 0 0 0 0 0 0
..............................................................................................................GTGTCCGCAACTGCCTGCAACT....................................................................................................................... 22 3 14 0.07 1 1 0 0 0 0 0 0
........................................................................CGGTCGCTTACTTCGTTCGGGT............................................................................................................................................................. 22 0 14 0.07 1 1 0 0 0 0 0 0
...........................................................................................................AACGTGTCCGCAACTGCCTGCGA......................................................................................................................... 23 1 14 0.07 1 1 0 0 0 0 0 0
....................................TCCAGTGGTGGCTTCACCCAAAAGT.............................................................................................................................................................................................. 25 0 14 0.07 1 1 0 0 0 0 0 0
.............................................................................................................CGTGTCCGCAACTGCCTGCGA......................................................................................................................... 21 0 14 0.07 1 1 0 0 0 0 0 0
...............................................................................................................TGTCCGCAACTGCCTGCGAT........................................................................................................................ 20 0 14 0.07 1 1 0 0 0 0 0 0
....................................TCCAGTGGTGGCTTCACCCAAAA................................................................................................................................................................................................ 23 0 14 0.07 1 1 0 0 0 0 0 0
............................................................................................................CCGTGTCCGCAACTGCCTGCG.......................................................................................................................... 21 0 14 0.07 1 1 0 0 0 0 0 0
..........................................................................GTCGCTTACTTCGTTCGGGT............................................................................................................................................................. 20 0 15 0.07 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTTGCTAGGTTTTTTGAGCAG.... 21 0 15 0.07 1 1 0 0 0 0 0 0
............................................................................CGCTTACTTCGGTCGGGT............................................................................................................................................................. 18 1 15 0.07 1 1 0 0 0 0 0 0
........................................................................................................................................AGTTCTGACGCATCCACTAGCGT............................................................................................ 23 0 15 0.07 1 1 0 0 0 0 0 0
.........................................................................GGTCGCTTACTTCGTTCGGGTCC........................................................................................................................................................... 23 0 15 0.07 1 1 0 0 0 0 0 0
.......................................................................................................................................AAGTTCTGACGCATCCACTAGCGT............................................................................................ 24 1 15 0.07 1 1 0 0 0 0 0 0
.......................GGTTATTAACCGTTCCAGTGGT.............................................................................................................................................................................................................. 22 0 16 0.06 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCTCGATTTTTTGAGCAG.... 19 2 17 0.06 1 0 0 1 0 0 0 0
.......................GGTTATTAACCGTTCCAG.................................................................................................................................................................................................................. 18 0 17 0.06 1 1 0 0 0 0 0 0
..................................GTACAAGTGGTGGCTTCA....................................................................................................................................................................................................... 18 2 19 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................AGTTGCATATTTGGCATGT............................................ 19 3 20 0.05 1 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_singleton_3835:1804-2054 + dps_2375 GTACGGCGGATGGGCAGAGCCAACCAATAATTGGCAAGGTCACCACCGAAGTGGGTTTTCACCGAGTACCGAGCCAGCGAATGAAGCAAGCCCAGGCTTGGCTCAAATGGCACAGGCGTTGACGG---ACGCTATGGTATCAAGACTGCGTAGGTGATCGCACCGTATTTTGTTATGGCTGTGGCAAACGGGAAACGTATAAACCGTATAATACGTCGTGCTCTAGGTACAAC---------GATCCAAAAAACTCGTCAAGC-----------------------
droPer2 scaffold_217:38524-38658 + T-----------------------------------------------------------------------------------------------------------GGAACTGTGGTTGTCAG---GGGCATCGGTATCAAGACTGCGTAGGTGATCGCACCGTCTTTTGTTACGGCTGTGGCAAACGGGATACGTATAAACCGT---------CGTGCTCTAGGTGCAAC---------GATCCAAAAAACTCGTCAAGC-----------------------
droWil2 scf2_1100000014321:676-786 - -----------------------------------------------------------------------------------------------------------------------------------------TATCAAGAGTGTGTAGCAGAACGGCGAGTGTTTTGCTATGGCTGTGGGAAGCCAAACACGTATAAGCCAT---------CTTGTGCCCATTATAAT-----GAT-CATTCAAAAAACACGGCAGGT-----------------------
droVir3 scaffold_12967:82612-82719 + -----------------------------------------------------------------------------------------------------------------------------------------TATCAAGACTGCGTGGCCGATCGCCGCGTTTTCTGTTATGGCTGTGGTCAAGCTGACAAATATAGACCAA---------GTTGTGCTAGATGCAGT---------CATGCAACAAACTCTTTGCGG-----------------------
droMoj3 scaffold_6286:657-769 + G---------------------------------------------------------------------------------------------------------------------------------------GTACCAAGATTGTACTGCGGAACGTCGAGTATTTTGTTATGGTTGTGGCAAACCCGACACGTATAAGCCTT---------CGTGCATGAAATGCAAC-----AAG-CATTCAAAAAACTTGTCAGCC-----------------------
droGri2 scaffold_9057:67107-67240 - GCGCT-------------------------------------------------------------------------------------------------------G-----------GAAAA---GGCCACCGATATCAAGAGTGTATGGCAGAGCGTAGAGTATTTTGTTATGGCTGCGGCAAAGCAGATACGTACAAACCTA---------GTTGTATAAACTGCAGTGC---AAGCGTTTCAAAAAACTATCATGCG-----------------------
droAna3 scaffold_1340:5333-5448 + G---------------------------------------------------------------------------------------------------------------------------------------ATATCAAGAATGTCTGGCTGATCGAAAAATATTTTGCTATGGTTGTGGGAAGGCCGATACGTATAAACCTA---------CATGTCGGACTTGTAACCC---AAACGCTCAAAAAAACTATCAAGGG-----------------------
droBip1 scf7180000395037:11494-11623 - C-----------------------------------------------------------------------------------------------------------GC-----------TAAA---GGTCGCAGATATCATGAATGTATGGCCGATCGAAAAATATTTTGCTATGGTTGTGGAAAGGCAGATACGTATAAAACTA---------CCTGTCGGACTTGTAACCC---AAACGATCAAAAAACCTACCAAGGG-----------------------
droKik1 scf7180000302487:7184-7291 - -----------------------------------------------------------------------------------------------------------------------------------------TATCATGATTTCTACGATGAGCGAAAAGTCTTTTGCTACGGTTGTGGAAAACCAGATACATATCGACCCT---------CTTGTCCTAAGTGTACT---------AGTACAAAAAACTATCAAGCT-----------------------
droFic1 scf7180000454098:3815-3941 + T-----------------------------------------------------------------------------------------------------------GGCA-----------AAGGTGGACATACGTATCAACAATGTCTAGAAGAAAGACGTCTCTTTTGCTGGAGCTGTGGCCTAGTAAACGACCACAAATCGT---------CATGCCCAAAATGTAGT---------CAGTCAAAAAACTACTCAGCC-----------------------
droEle1 scf7180000487993:3735-3844 + G---------------------------------------------------------------------------------------------------------------------------------------ATACCAAGATTGTCTTTGCGAACGGCAGGTGTTTTGTTACGGCTGTGGTCAGCCTGATACTTATAAACCAT---------CCTGTACGAAATGTACT---------GGCTCAAAAAACTTAGTAGAT-----------------------
droRho1 scf7180000776593:3710-3818 + G---------------------------------------------------------------------------------------------------------------------------------------ATATCAGGAGTGTTTGGGGGAAAAGAAGATTTTTTGTTATGGATGCGGGAAACCGGAAACTTATAAACCAT---------ATTGTACTCGGTGTAAT---------GGTCCAAAAATT-TGGTGAGC-----------------------
droBia1 scf7180000300553:2889-2922 + G-----------------------------------------------------------------------------------------------------------------------------------------TACAGC-TGATGGTAAAAGACAACAAGTCGTT-------------------------------------------------------------------------------------------GG-----------------------
droTak1 scf7180000415384:178564-178699 + T-----------------------------------------------------------------------------------------------------------GGAACTGTCGTGGCAAC---GGGCACCGTTACCAAGACTGCGTTGAGGATAGACGAGTATTTTGCTATGGGTGTGGCCAAGCGGATACATATCGTCCGA---------CTTGCCACAAGTGTAGCG--------CATACAAAAAACGTTCAAAAG-----------------------
droYak3 v2_chrUn_856:41511-41646 + G--------------------------------------------------------------------------------------------------------------------------AA---GGACACCGCTATCAGGATTGCGAAAGTAAGCGAAAGATTTTCTGCTACGGCTGTGGCACTCCAAATGTGTACAAACCCT---------CGTGTGGCAAGTGC---------------CTAAAAATC-GGGAAAACGAACACACATATCCGTCAGCCGC
droEre2 scaffold_4767:5726-5843 + G---------------------------------------------------------------------------------------------------------------------------------------GTATCAGGAGTGCACCTCTGACAGATGTGTCCTTTAGTATGGCTGCGGTAAAGGGGATACGTATAAGTCTT---------CATGCATCAAAAACAAGCGAGTT-ACGCTCCAAAAAACCAGCCACGG-----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTACGGCGGATGGGCAGAGCCAACCAATAATTGGCAAGGTCACCACCGAAGTGGGTTTTCACCGAGTACCGAGCCAGCGAATGAAGCAAGCCCAGGCTTGGCTCAAATGGCACAGGCGTTGACGG---ACGCTATGGTATCAAGACTGCGTAGGTGATCGCACCGTATTTTGTTATGGCTGTGGCAAACGGGAAACGTATAAACCGTATAATACGTCGTGCTCTAGGTACAAC---------GATCCAAAAAACTCGTCAAGC-----------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................TAATTGGCAAGGTCACCACCGAAG...........................................................................................................................................................................................................................................24161.191901900000000
...........................................................................................................................................................................GTTATGGCTGTGGCAAACGGG..............................................................................................2111.0010100000000
..........................................................................................................................................................TGATCGCACCGTATTTTGTTATGGC...........................................................................................................2511.0010100000000
...........................................................................................................................................................................GTTATGGCTGTGGCAAACGGGAAT...........................................................................................2411.0010100000000
.........................................................................................................................ACGG---ACGCTATGGTATCAAGACTGC.........................................................................................................................................2521.0020200000000
......................................................................................................TCAAATGGCACAGGCGTTGACGG---AC............................................................................................................................................................2580.7560310000110
..................................................................................................TGGCTCAAATGGCACAGGCGTTG.....................................................................................................................................................................2380.5040400000000
..................................................................................................TGGCTCAAATGGCACAGGCGTT......................................................................................................................................................................2280.5040400000000
...............................................................................................................................................................................................GAAACGTATAAACCGTATAATACGTCG....................................................................2740.5020000000200
......................................................................................................TCAAATGGCACAGGCGTTGACGG---A.............................................................................................................................................................2490.4440000000040
..................................................................................................TGGCTCAAATGGCACAGGCGTTGA....................................................................................................................................................................2480.3830300000000
.........................................................................................................................ACGG---ACGCTATGGTATCAAGACT...........................................................................................................................................2330.3310100000000
...................................................TGGGTTTTCACCGAGTACCGAGC....................................................................................................................................................................................................................2330.3310100000000
.........................................................................................................................ACGG---ACGCTATGGTATCAAGACTG..........................................................................................................................................2430.3310100000000
.......................................................................................................................TGACGG---ACGCTATGGTATCAAGAC............................................................................................................................................2430.3310100000000
..........................................................................................................................CGG---ACGCTATGGTATCAAGACT...........................................................................................................................................2230.3310100000000
.......................................................TTTTCACCGAGTACCGAGCCAGCGAAT............................................................................................................................................................................................................2730.3310000000100
.......................................................................................................................................................................................................TAAACCGTATAATACGTCGTGCTCTAGG...........................................................2830.3310100000000
......................................................................................................................................................................................................ATAAACCGTATAATACGTCGTGC.................................................................2330.3310100000000
..........................................................TCACCGAGTACCGAGCCAGCGAAT............................................................................................................................................................................................................2430.3310100000000
......................................................................................................TCAAATGGCACAGGCGTTGACGG---..............................................................................................................................................................2390.3330300000000
...........................................................................................................TGGCACAGGCGTTGACGG---ACGCTA........................................................................................................................................................24130.3140400000000
...........................TAATTGGCAAGGTCACCACCGAA............................................................................................................................................................................................................................................23160.2540400000000
.................................................................................................TTGGCTCAAATGGCACAGGCGTTGAC...................................................................................................................................................................2680.2520200000000
...........................................................................................................................................................................................................................GCTCTAGGTACAAC---------GATCC.......................................1940.2510100000000
.....................................................................................................CTCAAATGGCACAGGCGTTGACGG---AC............................................................................................................................................................2680.2520200000000
............................AATTGGCAAGGTCACCACCGAAG...........................................................................................................................................................................................................................................23160.2540400000000
................................................................................................................................................................................................................TAATACGTCGTGCTCTAGGTA.........................................................2140.2510100000000
...........................................................................................................TGGCACAGGCGTTGACGG---ACGCT.........................................................................................................................................................23130.1520200000000
.........................................................................................................AATGGCACAGGCGTTGACGG---ACG...........................................................................................................................................................23140.1420000000200
...........................................................................................................TGGCACAGGCGTTGACGG---ACG...........................................................................................................................................................21140.1420200000000
..........................................................................CAGCGAATGAAGCAAGCCCAGG..............................................................................................................................................................................................22150.1320200000000
..........................................................................CAGCGAATGAAGCAAGCCCAGGCT............................................................................................................................................................................................24150.1320200000000
.........................................................................CCAGCGAATGAAGCAAGCCCAGGCT............................................................................................................................................................................................25150.1320200000000
...........................TAATTGGCAAGGTCACCACCGAAGT..........................................................................................................................................................................................................................................25160.1320200000000
...............................................................................................GCTTGGCTCAAATGGCACAGGCGTTG.....................................................................................................................................................................2680.1310100000000
......................................................................................................TCAAATGGCACAGGCGTTGACGG---ACGC..........................................................................................................................................................2780.1310100000000
..................................................................................................TGGCTCAAATGGCACAGGCGTTGACG..................................................................................................................................................................2680.1310100000000
..........................................................................................CCCAGGCTTGGCTCAAATGGCACAGGCG........................................................................................................................................................................2880.1310100000000
..................................................................................................TGGCTCAAATGGCACAGGCGTTCC....................................................................................................................................................................2480.1310000001000
...........................TAATTGGCAAGGTCACCACCGA.............................................................................................................................................................................................................................................22160.1320200000000
...........................TAATTGGCAAGGTCACCACC...............................................................................................................................................................................................................................................20170.1220200000000
......................................................................................................TCAAATGGCACAGGCGTTG.....................................................................................................................................................................1990.1110100000000
.....................................................................................................CTCAAATGGCACAGGCGTTG.....................................................................................................................................................................2090.1110100000000
....................................................................................................GCTCAAATGGCACAGGCGTTG.....................................................................................................................................................................2190.1110100000000
..................................................................................................TGGCTCAAATGGCACAGG..........................................................................................................................................................................18100.1010100000000
..........................................................................................CCCAGGCTTGGCTCAAATGGCACAG...........................................................................................................................................................................25100.1010100000000
..........................................................................................CCCAGGCTTGGCTCAAATGG................................................................................................................................................................................20100.1010000100000
..........................................................................................CCCAGGCTTGGCTCAAATGGC...............................................................................................................................................................................21100.1010100000000
...............................................................................................GCTTGGCTCAAATGGCACAGG..........................................................................................................................................................................21100.1010100000000
...........................................................................................CCAGGCTTGGCTCAAATGGCACAGG..........................................................................................................................................................................25100.1010100000000
......................................................................................CAAGCCCAGGCTTGGCTCAAATG.................................................................................................................................................................................23100.1010100000000
.................................................................................TGAAGCAAGCCCAGGCTTGGCTC......................................................................................................................................................................................23100.1010100000000
.................................................................................................TTGGCTCAAATGGCACAGG..........................................................................................................................................................................19100.1010100000000
..........................................................................................CCCAGGCTTGGCTCAAATGGCAC.............................................................................................................................................................................23100.1010100000000
........................................................................................AGCCCAGGCTTGGCTCAAATGGCACA............................................................................................................................................................................26100.1010100000000
.........................................................................CCAGCGAATGAAGCAAGCCCAGGCTT...........................................................................................................................................................................................26120.0810100000000
.................................................................................TGAAGCAAGCCCAGGCTTGGC........................................................................................................................................................................................21130.0810100000000
............................................................................................................GGCACAGGCGTTGACGG---ACGCTA........................................................................................................................................................23130.0810100000000
.......................................................................................................CAAATGGCACAGGCGTTGACGG---ACGCTA........................................................................................................................................................28130.0810100000000
...........................................................................................................TGGCACAGGCGTTGACGG---ACGCTAT.......................................................................................................................................................25130.0810100000000
....................................................................................................................CGTTGACGG---ACGCTATGG.....................................................................................................................................................18130.0810100000000
.......................................................................................................................................GGTATCAAGACTGCGTAGGTGATCGCAC...........................................................................................................................28140.0710100000000
..............................TTGGCAAGGTCACCACCGAAGTGGG.......................................................................................................................................................................................................................................25140.0710100000000
...........................TAATTGGCAAGGTCACCACCGAAGTG.........................................................................................................................................................................................................................................26140.0710100000000
..............................TTGGCAAGGTCACCACCGAAGTGGGTTT....................................................................................................................................................................................................................................28140.0710100000000
.........................................................................................................................................TATCAAGACTGCGTAGGTGATCGCACCG.........................................................................................................................28140.0710000000010
.....................................................................CGAGCCAGCGAATGAAGCAAGCCCAGG..............................................................................................................................................................................................27140.0710100000000
......................................................................................................................................................................................................................................AAC---------GATCCAAAAAACTCGTCAAGC-----------------------24140.0710100000000
.........................................................................................................................................TATCAAGACTGCGTAGGTGATCGCAC...........................................................................................................................26140.0710100000000
.....................................................................CGAGCCAGCGAATGAAGCAAGCC..................................................................................................................................................................................................23140.0710100000000
.............................ATTGGCAAGGTCACCACCGAAGTGG........................................................................................................................................................................................................................................25140.0710100000000
...............................TGGCAAGGTCACCACCGAAGTGGGTT.....................................................................................................................................................................................................................................26140.0710100000000
................................GGCAAGGTCACCACCGAAGTGGG.......................................................................................................................................................................................................................................23140.0710100000000
..........................................................................CAGCGAATGAAGCAAGCCCAGT..............................................................................................................................................................................................22150.0710100000000
.......................................................................................................CAAATGGCACAGGCGTTGAC...................................................................................................................................................................20150.0710000001000
........................................................................................................AAATGGCACAGGCGTTGACGA---..............................................................................................................................................................21150.0710100000000
...........................................................................................................................................TCAAGACTGCGTAGGTGATCGCAC...........................................................................................................................24150.0710010000000
.TACGGCGGATGGGCAGAG...........................................................................................................................................................................................................................................................................18150.0710100000000
...........................TAATTGGCAAGGTCACCACCGAAGA..........................................................................................................................................................................................................................................25160.0610100000000
...........................TAATTGGCAAGGTCACCACCG..............................................................................................................................................................................................................................................21160.0610100000000
..............................................................................GAATGAAGCAAGCCCAGG..............................................................................................................................................................................................18170.0610100000000
droPer2
T-----------------------------------------------------------------------------------------------------------GGAACTGTGGTTGTCAG---GGGCATCGGTATCAAGACTGCGTAGGTGATCGCACCGTCTTTTGTTACGGCTGTGGCAAACGGGATACGTATAAACCGT---------CGTGCTCTAGGTGCAAC---------GATCCAAAAAACTCGTCAAGC-----------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................ATCGGTATCAAGACTGCGTAGGT...................................................................................................................................23200.255050000
.............................................................................................................................................................................TACGGCTGTGGCAAACGGGAT............................................................................................21200.153300000
....................................................................................................................................ATCGGTATCAAGACTGCGTAGGTGA.................................................................................................................................25200.153020001
...............................................................................................................................................................................................GATACGTATAAACCGT---------CGTGCTCTAG............................................................26200.102020000
..........................................................................................................................................................TGATCGCACCGTCTTTTGTTACGGCTG.........................................................................................................27190.051010000
....................................................................................................................................ATCGGTATCAAGACTGCGTAG.....................................................................................................................................21200.051010000
........................................................................................................................................................................TTTGTTACGGCTGTGGCAAACGGGA.............................................................................................25200.051010000
.................................................................................................................................................................................................TACGTATAAACCGT---------CGTGCTCTAGGT..........................................................26200.051010000
........................................................................................................................................................................................................AAACCGT---------CGTGCTCTAGGTGCA.......................................................22200.051010000
...................................................................................................................................................................CGTCTTTTGTTACGGCTGTGGC.....................................................................................................22200.051010000
.................................................................................................................TGTGGTTGTCAG---GGGCATCGG.....................................................................................................................................................21200.051010000
..............................................................................................................................................AGACTGCGTAGGTGATCGC.............................................................................................................................19200.051001000
..........................................................................................................................................................................TGTTACGGCTGTGGCAAACGG...............................................................................................21200.051010000
....................................................................................................................................ATCGGTATCAAGACTGCGTAGGTGAT................................................................................................................................26200.051010000
.............................................................................................................................................................................................................................TCTAGGTGCAAC---------GATCCAAAA...................................21200.051010000
.............................................................................................................................................................................TACGGCTGTGGCAAACGGGATACG.........................................................................................24200.051010000
....................................................................................................................................................................................................GTATAAACCGT---------CGTGCTCTAGT...........................................................22200.051010000
...................................................................................................................................................................CGTCTTTTGTTACGGCTGTGGCAAA..................................................................................................25200.051010000
...............................................................................................................................................................................................GATACGTATAAACCGT---------CGTGC.................................................................21200.051010000
................................................................................................................................................................................................ATACGTATAAACCGT---------CGTGCTCT..............................................................23200.051010000
..................................................................................................................................................................................................ACGTATAAACCGT---------CGTGCTCTAGG...........................................................24200.051010000
.......................................................................................................................................................................TTTTGTTACGGCTGTGGCAAACGG...............................................................................................24200.051100000
.....................................................................................................................................TCGGTATCAAGACTGCGTAGGT...................................................................................................................................22200.051010000
droWil2
-----------------------------------------------------------------------------------------------------------------------------------------TATCAAGAGTGTGTAGCAGAACGGCGAGTGTTTTGCTATGGCTGTGGGAAGCCAAACACGTATAAGCCAT---------CTTGTGCCCATTATAAT-----GAT-CATTCAAAAAACACGGCAGGT-----------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................AGAGTGTGTAGCAGAACGGCGAG.........................................................................................................................2351.40707000
....................................................................................................................................................TGTAGCAGAACGGCGAGTGTTTTG..................................................................................................................2451.00505000
....................................................................................................................................................TGTAGCAGAACGGCGAGTGTTTT...................................................................................................................2350.80404000
..............................................................................................................................................AGAGTGTGTAGCAGAACGGCGAGTG.......................................................................................................................2550.60303000
.................................................................................................................................................GTGTGTAGCAGAACGGCGAGTGT......................................................................................................................2350.60303000
..............................................................................................................................................AGAGTGTGTAGCAGAACGGCGA..........................................................................................................................2250.60303000
.................................................................................................................................................GTGTGTAGCAGAACGGCGAGTG.......................................................................................................................2250.60303000
.................................................................................................................................................GTGTGTAGCAGAACGGCGA..........................................................................................................................1950.40202000
..............................................................................................................................................AGAGTGTGTAGCAGAACGGCGAGT........................................................................................................................2450.40202000
....................................................................................................................................................TGTAGCAGAACGGCGAGTGTT.....................................................................................................................2160.33201001
..............................................................................................................................................AGAGTGTGTAGCAGAACGGCG...........................................................................................................................21100.30303000
....................................................................................................................................................................GTGTTTTGCTATGGCTGTGGGAAG..................................................................................................2490.22202000
.................................................................................................................................................GTGTGTAGCAGAACGGCGAG.........................................................................................................................2050.20101000
.................................................................................................................................................GTGTGTAGCAGAACGGCGAGTGTT.....................................................................................................................2450.20101000
..............................................................................................................................................AGAGTGTGTAGCAGAACGGCGAGTGT......................................................................................................................2650.20101000
..............................................................................................................................................AGAGTGTGTAGCAGAACGGCGAGTGTT.....................................................................................................................2750.20101000
...............................................................................................................................................GAGTGTGTAGCAGAACGGCGA..........................................................................................................................2150.20101000
....................................................................................................................................................TGTAGCAGAACGGCGAGTGT......................................................................................................................2060.17101000
..................................................................................................................................................TGTGTAGCAGAACGGCGAGTGTTT....................................................................................................................2460.17100100
.....................................................................................................................................................................TGTTTTGCTATGGCTGTGGGAAGC.................................................................................................2490.11101000
......................................................................................................................................................................GTTTTGCTATGGCTGTGGGAAG..................................................................................................2290.11101000
.....................................................................................................................................................................TGTTTTGCTATGGCTGTGGGAAGCCAAA.............................................................................................2890.11100010
..............................................................................................................................................AGAGTGTGTAGCAGAACGG.............................................................................................................................19100.10101000
...............................................................................................................................................GAGTGTGTAGCAGAACGGCG...........................................................................................................................20100.10101000
droVir3
-----------------------------------------------------------------------------------------------------------------------------------------TATCAAGACTGCGTGGCCGATCGCCGCGTTTTCTGTTATGGCTGTGGTCAAGCTGACAAATATAGACCAA---------GTTGTGCTAGATGCAGT---------CATGCAACAAACTCTTTGCGG-----------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................TTGTGCTAGATGCAGT---------CATGC.......................................2120.501000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................A---------GTTGTGCTAGATGCAGT---------CAT.........................................2120.501000000000000010000000000000000000000000000000000000000000000000
droMoj3
G---------------------------------------------------------------------------------------------------------------------------------------GTACCAAGATTGTACTGCGGAACGTCGAGTATTTTGTTATGGTTGTGGCAAACCCGACACGTATAAGCCTT---------CGTGCATGAAATGCAAC-----AAG-CATTCAAAAAACTTGTCAGCC-----------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................GACACGTATAAGCCTT---------CGTGCATGA.............................................................2532.337700000
.............................................................................................................................................................ACGTCGAGTATTTTGTTATGGTTG.........................................................................................................2432.006410010
...............................................................................................................................................................................................GACACGTATAAGCCTT---------CGTGCATG..............................................................2431.334400000
.............................................................................................................................................................ACGTCGAGTATTTTGTTATGGTT..........................................................................................................2331.003200010
...............................................................................................................................................................................................GACACGTATAAGCCTT---------CGTGCATGAAA...........................................................2730.672200000
.............................................................................................................................................................ACGTCGAGTATTTTGTTATGGTTGTGG......................................................................................................2730.672200000
..............................................................................................................................................................................................................................................AAG-CATTCAAAAAACTTGTCAGC........................2320.501000010
G---------------------------------------------------------------------------------------------------------------------------------------GTACCAAGATTGTACTGCGG..................................................................................................................................2130.331100000
.........................................................................................................................................TACCAAGATTGTACTGCGGAACGTCG...........................................................................................................................2630.331100000
.............................................................................................................................................................ACGTCGAGTATTTTGTTATGGTTGTGGC.....................................................................................................2830.331100000
...............................................................................................................................................................GTCGAGTATTTTGTTATGGTTGT........................................................................................................2330.331100000
..........................................................................................................................................................GGAACGTCGAGTATTTTGTTATGG............................................................................................................2430.331100000
................................................................................................................................................................TCGAGTATTTTGTTATGGTTGTGG......................................................................................................2430.331100000
.............................................................................................................................................................ACGTCGAGTATTTTGTTATGGTTAC........................................................................................................2530.331000010
...........................................................................................................................................CCAAGATTGTACTGCGGA.................................................................................................................................1830.331100000
................................................................................................................................................................TCGAGTATTTTGTTATGGTTGTGGC.....................................................................................................2530.331000001
.............................................................................................................................................................ACGTCGAGTATTTTGTTATGGTTGT........................................................................................................2530.331000010
...............................................................................................................................................................................................GACACGTATAAGCCTT---------CGTGCA................................................................2240.251100000
...............................................................................................................................................................................TGGTTGTGGCAAACCCGACACG.........................................................................................2240.251100000
droGri2
GCGCT-------------------------------------------------------------------------------------------------------G-----------GAAAA---GGCCACCGATATCAAGAGTGTATGGCAGAGCGTAGAGTATTTTGTTATGGCTGCGGCAAAGCAGATACGTACAAACCTA---------GTTGTATAAACTGCAGTGC---AAGCGTTTCAAAAAACTATCATGCG-----------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
G---------------------------------------------------------------------------------------------------------------------------------------ATATCAAGAATGTCTGGCTGATCGAAAAATATTTTGCTATGGTTGTGGGAAGGCCGATACGTATAAACCTA---------CATGTCGGACTTGTAACCC---AAACGCTCAAAAAAACTATCAAGGG-----------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................TACGTATAAACCTA---------CATGTCGGACTTG.........................................................27170.183210000
.....................................................................................................................................................................TATTTTGCTATGGTTGTGGGAAGGCCGA.............................................................................................28170.183300000
.......................................................................................................................................................................................................TAAACCTA---------CATGTCGGACTTGTAACCC---A...............................................28180.173300000
.....................................................................................................................................................................TATTTTGCTATGGTTGTGGGAAGG.................................................................................................24180.173300000
...........................................................................................................................................................................GCTATGGTTGTGGGAAGGCCGA.............................................................................................22170.122100010
.......................................................................................................................................................................TTTTGCTATGGTTGTGGGAAGGC................................................................................................23170.122011000
.....................................................................................................................................................................TATTTTGCTATGGTTGTGGGAAGGC................................................................................................25170.122200000
..................................................................................................................................................................AAATATTTTGCTATGGTTGTGGG.....................................................................................................23180.112011000
.....................................................................................................................................................................TATTTTGCTATGGTTGTGGGAAG..................................................................................................23180.112200000
...............................................................................................................................................................................................................................................AACGCTCAAAAAAACTATCAAGGG-----------------------24200.102110000
.............................................................................................................................................................................................................................CGGACTTGTAACCC---AAACGCTCA.......................................23200.102200000
...................................................................................................................................................................................TGTGGGAAGGCCGATACGTATAAACC.................................................................................26160.061010000
...........................................................................................................................................................................GCTATGGTTGTGGGAAGGCCGATACG.........................................................................................26160.061100000
..........................................................................................................................................................................TGCTATGGTTGTGGGAAGGCCGAT............................................................................................24160.061100000
................................................................................................................................................................................................ATACGTATAAACCTA---------CATGTCGGACTTG.........................................................28170.061100000
...........................................................................................................................................................................GCTATGGTTGTGGGAAGGCC...............................................................................................20170.061100000
..........................................................................................................................................................................TGCTATGGTTGTGGGAAGGCC...............................................................................................21170.061010000
.................................................................................................................................................................................................TACGTATAAACCTA---------CATGTCGGACTTGT........................................................28170.061100000
.................................................................................................................................................................................................TACGTATAAACCTA---------CATGTCGGACTTGTA.......................................................29170.061100000
.............................................................................................................................................................................TATGGTTGTGGGAAGGCCGATAC..........................................................................................23170.061100000
..........................................................................................................................................................................TGCTATGGTTGTGGGAAGGC................................................................................................20170.061010000
........................................................................................................................................................................TTTGCTATGGTTGTGGGAAGGCC...............................................................................................23170.061010000
...........................................................................................................................................................................GCTATGGTTGTGGGAAGGCCG..............................................................................................21170.061100000
.................................................................................................................................................................................................TACGTATAAACCTA---------CATGTCGGACT...........................................................25170.061010000
.............................................................................................................................................................................TATGGTTGTGGGAAGGCCGAT............................................................................................21170.061100000
.............................................................................................................................................................TCGAAAAATATTTTGCTATGGTTGTG.......................................................................................................26180.061100000
.............................................................................................................................................................................................................................CGGACTTGTAACCC---AAACGCTCAAAAA...................................27180.061100000
.....................................................................................................................................................................................................TATAAACCTA---------CATGTCGGACTTGTAACCC---................................................29180.061010000
.....................................................................................................................................................................TATTTTGCTATGGTTGTGGGAA...................................................................................................22180.061100000
..............................................................................................................................................................................ATGGTTGTGGGAAGGCCGA.............................................................................................19180.061100000
...............................................................................................................................................................GAAAAATATTTTGCTATGGTTGT........................................................................................................23180.061010000
.................................................................................................................................................................AAAATATTTTGCTATGGTTGTGGGA....................................................................................................25180.061010000
.......................................................................................................................................................................TTTTGCTATGGTTGTGGGA....................................................................................................19180.061100000
........................................................................................................................................ATATCAAGAATGTCTGGCTGATC...............................................................................................................................23190.051010000
..........................................................................................................................................ATCAAGAATGTCTGGCTGATCGA.............................................................................................................................23190.051100000
................................................................................................................................................................................................................................................ACGCTCAAAAAAACTATCAAGGG-----------------------23200.051001000
........................................................................................................................................................................................................................CATGTCGGACTTGTAACCC---................................................19200.051100000
...............................................................................................................................................................................................................................................AACGCTCAAAAAAACTATCAAGGC-----------------------24200.051010000
........................................................................................................................................................................................................................CATGTCGGACTTGTAACCC---A...............................................20200.051100000
droBip1
C-----------------------------------------------------------------------------------------------------------GC-----------TAAA---GGTCGCAGATATCATGAATGTATGGCCGATCGAAAAATATTTTGCTATGGTTGTGGAAAGGCAGATACGTATAAAACTA---------CCTGTCGGACTTGTAACCC---AAACGATCAAAAAACCTACCAAGGG-----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
-----------------------------------------------------------------------------------------------------------------------------------------TATCATGATTTCTACGATGAGCGAAAAGTCTTTTGCTACGGTTGTGGAAAACCAGATACATATCGACCCT---------CTTGTCCTAAGTGTACT---------AGTACAAAAAACTATCAAGCT-----------------------SizeHit CountTotal NormTotal
No Reads
droFic1
T-----------------------------------------------------------------------------------------------------------GGCA-----------AAGGTGGACATACGTATCAACAATGTCTAGAAGAAAGACGTCTCTTTTGCTGGAGCTGTGGCCTAGTAAACGACCACAAATCGT---------CATGCCCAAAATGTAGT---------CAGTCAAAAAACTACTCAGCC-----------------------SizeHit CountTotal NormTotal
No Reads
droEle1
G---------------------------------------------------------------------------------------------------------------------------------------ATACCAAGATTGTCTTTGCGAACGGCAGGTGTTTTGTTACGGCTGTGGTCAGCCTGATACTTATAAACCAT---------CCTGTACGAAATGTACT---------GGCTCAAAAAACTTAGTAGAT-----------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G---------------------------------------------------------------------------------------------------------------------------------------ATATCAGGAGTGTTTGGGGGAAAAGAAGATTTTTTGTTATGGATGCGGGAAACCGGAAACTTATAAACCAT---------ATTGTACTCGGTGTAAT---------GGTCCAAAAATT-TGGTGAGC-----------------------SizeHit CountTotal NormTotal
No Reads
droBia1
G-----------------------------------------------------------------------------------------------------------------------------------------TACAGC-TGATGGTAAAAGACAACAAGTCGTT-------------------------------------------------------------------------------------------GG-----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T-----------------------------------------------------------------------------------------------------------GGAACTGTCGTGGCAAC---GGGCACCGTTACCAAGACTGCGTTGAGGATAGACGAGTATTTTGCTATGGGTGTGGCCAAGCGGATACATATCGTCCGA---------CTTGCCACAAGTGTAGCG--------CATACAAAAAACGTTCAAAAG-----------------------SizeHit CountTotal NormTotal
No Reads
droYak3
G--------------------------------------------------------------------------------------------------------------------------AA---GGACACCGCTATCAGGATTGCGAAAGTAAGCGAAAGATTTTCTGCTACGGCTGTGGCACTCCAAATGTGTACAAACCCT---------CGTGTGGCAAGTGC---------------CTAAAAATC-GGGAAAACGAACACACATATCCGTCAGCCGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
G---------------------------------------------------------------------------------------------------------------------------------------GTATCAGGAGTGCACCTCTGACAGATGTGTCCTTTAGTATGGCTGCGGTAAAGGGGATACGTATAAGTCTT---------CATGCATCAAAAACAAGCGAGTT-ACGCTCCAAAAAACCAGCCACGG-----------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 04:21 AM