ID:

dps_2370

 Coordinate:

Unknown_singleton_3671:17281-17431 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.9 -33.4 -33.2 -33.1

Flybase annnotation

CDS [Dpse\GA27691-cds]; exon [dpse_GLEANR_6711:2]; intron [Dpse\GA27691-in]

Repeatable elements

NameClassFamilyStrand
Gypsy9-I_Dpse-intLTRGypsy+
mature
  1. dps_2370  Unknown_singleton_3671:17408-17431 +
  2. Unknown_group_323:14469-14492 +
  3. Unknown_singleton_3738:862-885 -
star
  1. Unknown_group_528:5337-5361 +
  2. Unknown_group_519:5886-5910 +
  3. Unknown_group_721:4890-4914 -
  4. Unknown_group_242:4023-4047 -
  5. Unknown_group_242:9996-10020 -
  6. Unknown_singleton_3671:543-567 -
  7. Unknown_singleton_3671:4681-4705 +
  8. Unknown_singleton_3671:10428-10452 +
  9. dps_2370  Unknown_singleton_3671:17316-17340 +
  10. Unknown_singleton_3302:2406-2430 +
  11. Unknown_group_323:14377-14401 +
  12. Unknown_singleton_3738:953-977 -
  13. Unknown_singleton_2527:658-682 -
  14. Unknown_group_583:649-673 +
  15. Unknown_singleton_3643:44-68 -
  16. Unknown_singleton_221:162-186 +
  17. Unknown_singleton_1353:623-647 +
  18. Unknown_singleton_1230:1349-1373 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GACCCTGCAGAACGGATTAAATAGCCGCAACTCTGGCTCCCATCAATCAGTGCACTCTCACTAGAAGAAGGCGAAGCCATCTTCATGACTCTCGTCGGGGAAGAAAGGGGAGGGTGTAAAGAACCCAAAAGGGTTCGCTACAACGCCTCTCCCAACACCCAATAAAGATCCGGCTACTAAATTACAAAACCTCGCCCAAAGTGATTTACTACACGAACACCCCCCCTCCACACATAGCCACCGACTTCTTT
*************************************************************************************((......(((((((......((((((((((((..((((((....))))))..))).)).))))))).....)))..........))))......................))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
 V112
male body		 GSM444067
head
 M062
head
..............................................................................................................................................................................................................TACTACACGAACACCCCCCCTCC...................... 23 0 13 1.00 13 13 0 0 0 0 0 0
..............................................................................................................................................................................................................TACTACACGAACACCCCCCCTC....................... 22 0 13 0.69 9 7 2 0 0 0 0 0
.......................................CCATCAATCAGTGCACTCTCAC.............................................................................................................................................................................................. 22 0 12 0.58 7 7 0 0 0 0 0 0
..............................................................................................................................................................................................................TACTACACGAACACCCCCCCTCCA..................... 24 0 13 0.38 5 5 0 0 0 0 0 0
.................................................................................................................................................................................TAAATTACAAAACCTCGCCCAAAG.................................................. 24 0 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................................................................................CGGCTACTAAATTACAAAACCTCG......................................................... 24 0 3 0.33 1 1 0 0 0 0 0 0
..............................................................................................................................................................................TACTAAATTACAAAACCTCGCCC...................................................... 23 0 3 0.33 1 0 1 0 0 0 0 0
.....................................................................................TGACTCTCGTCGGGGAAGAAAGGGG............................................................................................................................................. 25 0 18 0.33 6 0 6 0 0 0 0 0
......................................................................................GACTCTCGTCGGGGAAGAAAGGG.............................................................................................................................................. 23 0 19 0.32 6 4 1 0 0 1 0 0
.......................................................................................ACTCTCGTCGGGGAAGAAAGGG.............................................................................................................................................. 22 0 20 0.30 6 0 2 3 0 1 0 0
.......................................................................................ACTCTCGTCGGGGAAGAAAGGGG............................................................................................................................................. 23 0 20 0.25 5 4 0 0 0 0 1 0
..............................................................................................................................................................................................................TACTACACGAACACCCCCCCT........................ 21 0 13 0.23 3 3 0 0 0 0 0 0
.......................................................................................ACTCTCGTCGGGGAAGAAAGGGGT............................................................................................................................................ 24 1 20 0.20 4 0 4 0 0 0 0 0
............................................................................CCATCTTCATGACTCTCGTCGGGG....................................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0
....................................................................................ATGACTCTCGTCGGGGAAGA................................................................................................................................................... 20 0 5 0.20 1 0 0 1 0 0 0 0
...................................................................AAGGCGAAGCCATCTTCATGACTCTC.............................................................................................................................................................. 26 0 5 0.20 1 0 0 0 1 0 0 0
.....................................................................................TGACTCTCGTCGGGGAAGAAAGGG.............................................................................................................................................. 24 0 18 0.17 3 0 3 0 0 0 0 0
.....................................................................................TGACTCTCGTCGGGGAAGAAAGG............................................................................................................................................... 23 0 18 0.17 3 2 1 0 0 0 0 0
.....................................................................................TGACTCTCGTCGGGGAAGAAAGGGGAG........................................................................................................................................... 27 0 18 0.17 3 0 0 3 0 0 0 0
..............................................................................................................................................................CCAATAAAGATCCGGCTACTAAAT..................................................................... 24 0 12 0.17 2 0 2 0 0 0 0 0
......................................................................................GACTCTCGTCGGGGAAGAAAGG............................................................................................................................................... 22 0 19 0.11 2 2 0 0 0 0 0 0
.....................................................................................................................................TTCGCTACAACGCCTCTCCCAACA.............................................................................................. 24 0 10 0.10 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TACTACACGAACACCCCCCCTCCACAC.................. 27 0 10 0.10 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TACTACACGAACACCCCCCCTCCACACA................. 28 0 10 0.10 1 1 0 0 0 0 0 0
................................................................................................................................................................AATAAAGGCCCGGCTACTA........................................................................ 19 2 20 0.10 2 2 0 0 0 0 0 0
.......................................................................................ACTCTCGTCGGGGAAGAAAG................................................................................................................................................ 20 0 20 0.10 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................................TACTACACGAACACCCCCCCTCCACA................... 26 0 10 0.10 1 0 0 0 1 0 0 0
..............................................................................................................................................................................................................TACTACACGAACACCCCCCCTCCAC.................... 25 0 11 0.09 1 0 0 0 0 0 0 1
........................................CATCAATCAGTGCACTCTCA............................................................................................................................................................................................... 20 0 12 0.08 1 1 0 0 0 0 0 0
..............................................................................................................................................................CCAATGAAGATCCGGCTACTAAAT..................................................................... 24 1 12 0.08 1 0 1 0 0 0 0 0
.......................................CCATCAATCAGTGCACTCTC................................................................................................................................................................................................ 20 0 12 0.08 1 1 0 0 0 0 0 0
.......................................CCATCAATCAGTGCACTCTCA............................................................................................................................................................................................... 21 0 12 0.08 1 1 0 0 0 0 0 0
.......................................CCATCAATCAGTGCACTCTCC............................................................................................................................................................................................... 21 1 13 0.08 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................ACTACACGAACACCCCCCCT........................ 20 0 13 0.08 1 1 0 0 0 0 0 0
.......................................CCATCAATCAGTGCACTCTCCC.............................................................................................................................................................................................. 22 1 13 0.08 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TACTATACGAACACCGCCCCTCCA..................... 24 2 13 0.08 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................ACTACACGAACACCCCCCCTCC...................... 22 0 13 0.08 1 1 0 0 0 0 0 0
.....................................................................................TGACTCTCGTCGGGGAAGAAAGGT.............................................................................................................................................. 24 1 18 0.06 1 1 0 0 0 0 0 0
.....................................................................................TGACTCTCGTCGGGGAAGAAAG................................................................................................................................................ 22 0 19 0.05 1 1 0 0 0 0 0 0
......................................................................................GACTCTCGTCGGGGAAGAAAGGGG............................................................................................................................................. 24 0 19 0.05 1 0 1 0 0 0 0 0
..............................................................................................TCGGGGAAGAAAGGGGAG........................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 1 0 0
...........................................................................................................................CCCAAAAGGGTTCGCTACAACGCCT....................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................ACTCTCGTCGGGGAAGAAAGGA.............................................................................................................................................. 22 1 20 0.05 1 0 0 0 0 1 0 0
...............................................................................................TGAGGTAGAAAGGGGAGGGT........................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 1 0 0
.......................................................................................................AAAGGGAAGGGTGGAAAG.................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................CTCGTCGGGGAAGAAAGGGG............................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................ACTCTCGTCGGGGAAGAAA................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................TCGTCGGGGAAGAAAGGGGAGGGTG....................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0
.......................................................................................ACTCTCGTCGGGGAAGAATGGCGT............................................................................................................................................ 24 3 20 0.05 1 1 0 0 0 0 0 0
......................................................................................GACTCTCGTCGGGGAAGAAAG................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................TCGTCGGGGAAGAAAGGGGA............................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0
......................................................................................GACTCTCGTCGGGGAAGAAA................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................TCGTCGGGGAAGAAAGGGGT............................................................................................................................................ 20 1 20 0.05 1 0 0 0 1 0 0 0
...............................................................................................CGGGGAAGAAAGGGGAGGG......................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 1 0
........................................................................................CTCTCGTCGGGGAAGAAAGGGGA............................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0
........................................................................................CTCTCGTCGGGGAAGAAAGGG.............................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0
..............................................................................................TCGGGGAAGAAAGGGGAGG.......................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................ACTCTCGTCGGGGAAGAAAGGGGA............................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

CTGGGACGTCTTGCCTAATTTATCGGCGTTGAGACCGAGGGTAGTTAGTCACGTGAGAGTGATCTTCTTCCGCTTCGGTAGAAGTACTGAGAGCAGCCCCTTCTTTCCCCTCCCACATTTCTTGGGTTTTCCCAAGCGATGTTGCGGAGAGGGTTGTGGGTTATTTCTAGGCCGATGATTTAATGTTTTGGAGCGGGTTTCACTAAATGATGTGCTTGTGGGGGGGAGGTGTGTATCGGTGGCTGAAGAAA
**************************************************((......(((((((......((((((((((((..((((((....))))))..))).)).))))))).....)))..........))))......................))...************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 GSM343916
embryo
 M059
embryo
 GSM444067
head
 M062
head
.................................................................................................................................................................................................CGGGTTTCACTAAATGATGTGCT................................... 23 0 13 12.85 167 140 8 5 4 9 0 1 0
.............................................................................................................................................................................................GGAGCGGGTTTCACTAAATGATGTGCT................................... 27 0 11 8.27 91 77 10 3 1 0 0 0 0
.......................CGGCGTTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 26 0 9 6.89 62 33 26 0 1 1 0 0 1
........................GGCGTTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 25 0 9 4.56 41 34 5 0 2 0 0 0 0
................................................................................................................................................................................................GCGGGTTTCACTAAATGATGTGCT................................... 24 0 11 4.00 44 29 12 3 0 0 0 0 0
...........................GTTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 22 0 9 3.00 27 27 0 0 0 0 0 0 0
..........................CGTTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 23 0 9 2.89 26 23 2 0 0 0 0 1 0
..................................................................................................................................................................................................GGGTTTCACTAAATGATGTGCT................................... 22 0 13 2.54 33 33 0 0 0 0 0 0 0
................................GACCGAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 22 0 10 2.30 23 22 1 0 0 0 0 0 0
...............................................................................................................................................................................................AGCGGGTTTCACTAAATGATGTGCT................................... 25 0 11 2.18 24 10 14 0 0 0 0 0 0
...........................GTTGAGACCGAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 27 0 9 2.00 18 18 0 0 0 0 0 0 0
.............................TGAGACCGAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 25 0 9 1.56 14 14 0 0 0 0 0 0 0
...............................AGACCGAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 23 0 9 1.56 14 13 1 0 0 0 0 0 0
..................................CCGAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 20 0 10 1.50 15 14 0 0 0 0 1 0 0
..............................GAGACCGAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 24 0 9 1.22 11 10 0 0 1 0 0 0 0
...........................GTTGAGACCGAGGGTAGTTAGTCAC....................................................................................................................................................................................................... 25 0 9 1.00 9 9 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAGCGGGTTTCACTAAATGATGTGCT................................... 26 0 11 0.91 10 10 0 0 0 0 0 0 0
...................................CGAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 19 0 10 0.90 9 9 0 0 0 0 0 0 0
.........................GCGTTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 24 0 9 0.89 8 7 0 0 1 0 0 0 0
.................................................................................................................................................................................................CGGGTTTCACTAAATGATGTGCTT.................................. 24 0 13 0.85 11 10 0 0 1 0 0 0 0
................................................................................................................................................................................................GCGGGTTTCACTAAATGATGTGC.................................... 23 0 11 0.82 9 9 0 0 0 0 0 0 0
...................................................................TTCCGCTTCGGTAGAAGTACTGAGAGCA............................................................................................................................................................ 28 0 5 0.80 4 1 3 0 0 0 0 0 0
...........................................................................CGGTAGAAGTACTGAGAGCAGC.......................................................................................................................................................... 22 0 5 0.80 4 2 0 0 2 0 0 0 0
....................................GAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 18 0 13 0.69 9 8 0 0 0 0 1 0 0
...................................................................................................................................................................................................GGTTTCACTAAATGATGTGCT................................... 21 0 13 0.62 8 5 2 1 0 0 0 0 0
.................................ACCGAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 21 0 10 0.60 6 6 0 0 0 0 0 0 0
.......................CGGCGTTGAGACCGAGGGTAGTTAGTC......................................................................................................................................................................................................... 27 0 9 0.56 5 1 4 0 0 0 0 0 0
.........................................................................................................................................GATGTTGCGGAGAGGGTTGTGGGT.......................................................................................... 24 0 11 0.55 6 0 6 0 0 0 0 0 0
.............................................................................................................................................................................................GGAGCGGGTTTCACTAAATGATGTGC.................................... 26 0 11 0.55 6 6 0 0 0 0 0 0 0
............................TTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 21 0 9 0.44 4 4 0 0 0 0 0 0 0
............................TTGAGACCGAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 26 0 9 0.44 4 4 0 0 0 0 0 0 0
...........................GTTGAGACCGAGGGTAGTTAGTCACG...................................................................................................................................................................................................... 26 0 9 0.44 4 4 0 0 0 0 0 0 0
...................................CGAGGGTAGTTAGTCACGTGAGAG................................................................................................................................................................................................ 24 0 9 0.44 4 4 0 0 0 0 0 0 0
.............................................................................................................................................................GGGTTATTTCTAGGCCGATGATTT...................................................................... 24 0 12 0.42 5 5 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGGGTTTCACTAAATGATGTGC.................................... 22 0 13 0.38 5 5 0 0 0 0 0 0 0
...................................................................................................................................CCAAGCGATGTTGCGGAGAGGGTT................................................................................................ 24 0 20 0.35 7 7 0 0 0 0 0 0 0
...............................AGACCGAGGGTAGTTAGTCACG...................................................................................................................................................................................................... 22 0 9 0.33 3 3 0 0 0 0 0 0 0
....................................GAGGGTAGTTAGTCACGTGAGAGT............................................................................................................................................................................................... 24 0 12 0.33 4 4 0 0 0 0 0 0 0
..................................CCGAGGGTAGTTAGTCACGTGAGAG................................................................................................................................................................................................ 25 0 9 0.33 3 3 0 0 0 0 0 0 0
...................................CGAGGGTAGTTAGTCACGTGAGAGT............................................................................................................................................................................................... 25 0 9 0.33 3 3 0 0 0 0 0 0 0
............................................................................................................................GGTTTTCCCAAGCGATGTTGC.......................................................................................................... 21 0 20 0.30 6 6 0 0 0 0 0 0 0
...................TTATCGGCGTTGAGACCGAGGGT................................................................................................................................................................................................................. 23 0 10 0.30 3 2 0 0 1 0 0 0 0
................................................................................................................................................................................................................................GGAGGTGTGTATCGGTGGCT....... 20 0 20 0.30 6 4 2 0 0 0 0 0 0
.................................ACCGAGGGTAGTTAGTCACG...................................................................................................................................................................................................... 20 0 10 0.30 3 3 0 0 0 0 0 0 0
........................................................................................GAGAGCAGCCCCTTCTTTCCCCT............................................................................................................................................ 23 0 20 0.30 6 6 0 0 0 0 0 0 0
...................................................................................................................................CCAAGCGATGTTGCGGAGAGGGT................................................................................................. 23 0 20 0.30 6 6 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAGCGGGTTTCACTAAATGATGTGC.................................... 25 0 11 0.27 3 1 0 2 0 0 0 0 0
....................................GAGGGTAGTTAGTCACGTGAGAG................................................................................................................................................................................................ 23 0 12 0.25 3 3 0 0 0 0 0 0 0
.......................................GGTAGTTAGTCACGTGAGAGT............................................................................................................................................................................................... 21 0 12 0.25 3 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGCGGGTTTCACTAAATGATGTGCT................................... 25 1 12 0.25 3 0 0 3 0 0 0 0 0
.................................................................................................................................................................................................CGGGTTTCACTAAATGATGTGCTTG................................. 25 0 13 0.23 3 3 0 0 0 0 0 0 0
.......................CGGCGTTGAGACCGAGGGTAGTTAG........................................................................................................................................................................................................... 25 0 9 0.22 2 2 0 0 0 0 0 0 0
...............................AGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 18 0 9 0.22 2 2 0 0 0 0 0 0 0
..............................GAGACCGAGGGTAGTTAGTC......................................................................................................................................................................................................... 20 0 9 0.22 2 2 0 0 0 0 0 0 0
............................TTGAGACCGAGGGTAGTTAGTCAC....................................................................................................................................................................................................... 24 0 9 0.22 2 2 0 0 0 0 0 0 0
.............................TGAGACCGAGGGTAGTTAGTCACG...................................................................................................................................................................................................... 24 0 9 0.22 2 2 0 0 0 0 0 0 0
.....................ATCGGCGTTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 28 0 9 0.22 2 2 0 0 0 0 0 0 0
...................................CGAGGGTAGTTAGTCACG...................................................................................................................................................................................................... 18 0 10 0.20 2 2 0 0 0 0 0 0 0
..................................................................................................................................CCCAAGCGATGTTGCGGAGAGGGTT................................................................................................ 25 0 20 0.20 4 4 0 0 0 0 0 0 0
................................GACCGAGGGTAGTTAGTCACG...................................................................................................................................................................................................... 21 0 10 0.20 2 2 0 0 0 0 0 0 0
.......................................................................GCTTCGGTAGAAGTACTGAGAGCAG........................................................................................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0
............................................................................................................................GGTTTTCCCAAGCGATGTTGCGGAG...................................................................................................... 25 0 20 0.20 4 4 0 0 0 0 0 0 0
........................................................................CTTCGGTAGAAGTACTGAGAGCAGC.......................................................................................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0
...........................................................................CGGTAGAAGTACTGAGAGCAG........................................................................................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GGGGAGGTGTGTATCGGTGGCT....... 22 0 20 0.20 4 4 0 0 0 0 0 0 0
..........................................................................TCGGTAGAAGTACTGAGAGCAGC.......................................................................................................................................................... 23 0 5 0.20 1 1 0 0 0 0 0 0 0
..........................................................................TCGGTAGAAGTACTGAGAGCAG........................................................................................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGAGCGGGTTTCACTAAATGATGTG..................................... 25 0 11 0.18 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGAGCGGGTTTCACTAAATGATGTGCTT.................................. 28 0 11 0.18 2 2 0 0 0 0 0 0 0
.........................................................................................................................................GATGTTGCGGAGAGGGTTGTGGG........................................................................................... 23 0 11 0.18 2 0 0 2 0 0 0 0 0
...............................................................................................................................................................................................AGCGGGTTTCACTAAATGATGTGC.................................... 24 0 11 0.18 2 2 0 0 0 0 0 0 0
.....................................AGGGTAGTTAGTCACGTGAGAG................................................................................................................................................................................................ 22 0 12 0.17 2 2 0 0 0 0 0 0 0
......................................GGGTAGTTAGTCACGTGAGAGT............................................................................................................................................................................................... 22 0 12 0.17 2 1 1 0 0 0 0 0 0
.....................................AGGGTAGTTAGTCACGTGAGAGT............................................................................................................................................................................................... 23 0 12 0.17 2 1 0 0 1 0 0 0 0
....................................GAGGGTAGTTAGTCACGTGAGAGTG.............................................................................................................................................................................................. 25 0 12 0.17 2 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................GGGTTTCACTAAATGATGTGC.................................... 21 0 13 0.15 2 2 0 0 0 0 0 0 0
....................................AAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 18 1 13 0.15 2 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................GTTTCACTAAATGATGTGCT................................... 20 0 13 0.15 2 2 0 0 0 0 0 0 0
............................................................................................................................GGTTTTCCCAAGCGATGTT............................................................................................................ 19 0 20 0.15 3 3 0 0 0 0 0 0 0
...........................................................................................................................GGGTTTTCCCAAGCGATGTT............................................................................................................ 20 0 20 0.15 3 3 0 0 0 0 0 0 0
..............................................................................................................................................................................................GGGCGGCTTTCACTAAATG.......................................... 19 2 15 0.13 2 2 0 0 0 0 0 0 0
............................................................................................................................................................................................TGGAGCGGGTTTCACTAAAT........................................... 20 0 15 0.13 2 1 0 1 0 0 0 0 0
.................................................................................................................................TCCCAAGCGATGTTGCGGAGAGGGTTGT.............................................................................................. 28 0 8 0.13 1 1 0 0 0 0 0 0 0
...............................AGACCGAGGGTAGTTAGTCAC....................................................................................................................................................................................................... 21 0 9 0.11 1 1 0 0 0 0 0 0 0
.............................TGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 20 0 9 0.11 1 1 0 0 0 0 0 0 0
......................TCGGCGTTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 27 0 9 0.11 1 1 0 0 0 0 0 0 0
........................GGCGTTGAGACCGAGGGTAGT.............................................................................................................................................................................................................. 21 0 9 0.11 1 0 0 0 1 0 0 0 0
...................TTATCGGCGTTGAGACCGAGGGTAGT.............................................................................................................................................................................................................. 26 0 9 0.11 1 1 0 0 0 0 0 0 0
..................................CCGAGGGTAGTTAGTCACGTGAGAGT............................................................................................................................................................................................... 26 0 9 0.11 1 1 0 0 0 0 0 0 0
........................GGCGTTGAGACCGAGGGTAGTTAGTC......................................................................................................................................................................................................... 26 0 9 0.11 1 1 0 0 0 0 0 0 0
.......................TTGCGTTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 26 2 9 0.11 1 1 0 0 0 0 0 0 0
.............................TGAGACCGAGGGTAGTTAGTCA........................................................................................................................................................................................................ 22 0 9 0.11 1 1 0 0 0 0 0 0 0
...........................GTTGAGACCGAGGGTAGTTAGTC......................................................................................................................................................................................................... 23 0 9 0.11 1 1 0 0 0 0 0 0 0
..............................GAGACCGAGGGTAGTTAG........................................................................................................................................................................................................... 18 0 9 0.11 1 1 0 0 0 0 0 0 0
...........................GTTGAGACCGAGGCTAGTTAGT.......................................................................................................................................................................................................... 22 1 9 0.11 1 1 0 0 0 0 0 0 0
...............................AGACCGAGGGTAGTTAGTCA........................................................................................................................................................................................................ 20 0 9 0.11 1 1 0 0 0 0 0 0 0
.......................TGGCGTTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 26 1 9 0.11 1 1 0 0 0 0 0 0 0
...................................CGAGGGTAGTTAGTCACGTG.................................................................................................................................................................................................... 20 0 9 0.11 1 0 0 1 0 0 0 0 0
..............................GAGACCGAGGGTAGTTAGTCAC....................................................................................................................................................................................................... 22 0 9 0.11 1 1 0 0 0 0 0 0 0
.............................TGAGACCGAGGGTAGTTAGTCAC....................................................................................................................................................................................................... 23 0 9 0.11 1 1 0 0 0 0 0 0 0
........................GGCGTTGAGACCGAGGGTAGTTAG........................................................................................................................................................................................................... 24 0 9 0.11 1 1 0 0 0 0 0 0 0
............................TTGAGACCGAGGGTAGTTAG........................................................................................................................................................................................................... 20 0 9 0.11 1 1 0 0 0 0 0 0 0
........................TGCGTTGAGACCGAGGGTAGTTAGTC......................................................................................................................................................................................................... 26 1 9 0.11 1 1 0 0 0 0 0 0 0
......................................................................................................................................AGCGATGTTGCGGAGAGGGTTGTGGGT.......................................................................................... 27 0 9 0.11 1 1 0 0 0 0 0 0 0
...........................GTTGAGACCGAGGGTAGTTAG........................................................................................................................................................................................................... 21 0 9 0.11 1 1 0 0 0 0 0 0 0
........................TGCGTTGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 25 1 9 0.11 1 0 0 0 1 0 0 0 0
........................GGCGTTGAGACCGAGGGTAGTT............................................................................................................................................................................................................. 22 0 9 0.11 1 1 0 0 0 0 0 0 0
........................GGCGTCGAGACCGAGGGTAGTTAGT.......................................................................................................................................................................................................... 25 1 10 0.10 1 0 1 0 0 0 0 0 0
............................................................................................GCAGCCCCTTCTTTCCCCTCCCACAT..................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0 0 0
............................................................................................GCAGCCCCTTCTTTCCCCTCCCACA...................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0
................................................................................................CCCCTTCTTTCCCCTCCCACAT..................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGGGGAGGTGTGTATCGGTGGCT....... 23 0 20 0.10 2 0 2 0 0 0 0 0 0
...................................CGAGGGTAGTTGGTCACGT..................................................................................................................................................................................................... 19 1 10 0.10 1 1 0 0 0 0 0 0 0
...............................................................................................................................TTTCCCAAGCGATGTTGCGGAGAG.................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0
..................................CCGAGGGTAGTTAGTCAC....................................................................................................................................................................................................... 18 0 10 0.10 1 1 0 0 0 0 0 0 0
................................GACCGAGGGTAGTTAGTCAC....................................................................................................................................................................................................... 20 0 10 0.10 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GGGCAGGTGTGAATCGATGG......... 20 3 20 0.10 2 0 0 0 0 0 0 2 0
..................................CCGAGGGTAGTTAGTCACG...................................................................................................................................................................................................... 19 0 10 0.10 1 1 0 0 0 0 0 0 0
.................................CCCGAGGGTAGTTAGTCACGT..................................................................................................................................................................................................... 21 1 10 0.10 1 1 0 0 0 0 0 0 0
........................GGCGTTGAGACCGAGGGTA................................................................................................................................................................................................................ 19 0 10 0.10 1 1 0 0 0 0 0 0 0
..................................CCGAGGGTAGTTAGTCACTT..................................................................................................................................................................................................... 20 1 10 0.10 1 0 0 0 0 0 1 0 0
...........................................................................................................................GGGTTTTCCCAAGCGATGT............................................................................................................. 19 0 20 0.10 2 2 0 0 0 0 0 0 0
.........................................................................................................................................GATGTTGCGGAGAAGGTTGTGGGT.......................................................................................... 24 1 11 0.09 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................AGCGGGTTTCACTAAATGATGTG..................................... 23 0 11 0.09 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGAGCGGGTTTCACTAAATGATGTGCTG.................................. 28 1 11 0.09 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................GCGGGTTTCACTAAATGATGTG..................................... 22 0 11 0.09 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGAGCGGGTTTCACTAAATGATGT...................................... 24 0 11 0.09 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................GTGCTCGTAGGGCGGAGGTGT................... 21 3 12 0.08 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................GGTTATTTCTAGGCCGATGATTT...................................................................... 23 0 12 0.08 1 1 0 0 0 0 0 0 0
.....................................AGGGTAGTTAGTCACGTGAG.................................................................................................................................................................................................. 20 0 12 0.08 1 1 0 0 0 0 0 0 0
............................................................................................................................................................TGGGTTATTTCTAGGCCGATGATT....................................................................... 24 0 12 0.08 1 1 0 0 0 0 0 0 0
......................................GGGTAGTTAGTCACGTGAGAGTG.............................................................................................................................................................................................. 23 0 12 0.08 1 1 0 0 0 0 0 0 0
......................................GGGTAGTTAGTCACGTGAGAG................................................................................................................................................................................................ 21 0 12 0.08 1 1 0 0 0 0 0 0 0
.....................................AGGGTAGTTAGTCACGTGA................................................................................................................................................................................................... 19 0 12 0.08 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................TATTTCTAGGCCGATGATTTAATGT................................................................. 25 0 12 0.08 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................GTGGGTTATTTCTAGGCCGATGATTT...................................................................... 26 0 12 0.08 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................GTTATTTCTAGGCCGATGATTT...................................................................... 22 0 12 0.08 1 1 0 0 0 0 0 0 0
....................................GGGGGTAGTTAGTCACGTGAG.................................................................................................................................................................................................. 21 1 12 0.08 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGGGTTTCACTAAATGATGTTCT................................... 23 1 13 0.08 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGGGTTTCACTAAATGATGT...................................... 20 0 13 0.08 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................CGGGTTTCACTAAATGATGTG..................................... 21 0 13 0.08 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................GGTTTCACTAAATGATGTGCTT.................................. 22 0 13 0.08 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................CGGGCTTCACTAAATGATGTGCT................................... 23 1 13 0.08 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................GGGTTTCACTAAATGATGTGCTTGT................................ 25 0 13 0.08 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................CGGGTTTCACTAAATGACGTGCT................................... 23 1 13 0.08 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................GGTTTCACTAAATGATGTGC.................................... 20 0 13 0.08 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................GGTTTCACTAAATGATGTGCTTGT................................ 24 0 13 0.08 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................TGTGGGTTATTTCTAGGCCGATGAT........................................................................ 25 0 15 0.07 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................GGAGCGGGTTTCACTAAAT........................................... 19 0 15 0.07 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGAGCGGGTTTCACTAAATGAT........................................ 22 0 15 0.07 1 0 1 0 0 0 0 0 0
............................................................................................................................................................TGGGGTATTTCTAGGCCGATGAT........................................................................ 23 1 16 0.06 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................GTTATTTCTAGGCCGATGA......................................................................... 19 0 16 0.06 1 1 0 0 0 0 0 0 0
............................................................................................................................................................TGGGTTATTTCTAGGCCGATGA......................................................................... 22 0 16 0.06 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................GGGTTATTTCTAGGCCGATGAT........................................................................ 22 0 16 0.06 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGGGTTTCACTAAATGATGGGCT................................... 23 1 17 0.06 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGTGTGTATCGGTGGCT....... 18 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGCGCGGCTTTCACGAAATG.......................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................ATGGGTTTTCCCAAGCGATGT............................................................................................................. 21 1 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................................GGGTTGGGGGTTGTTTCTA.................................................................................. 19 2 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................CCCAAGCGATGTTGCGGAGAGGG.................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................................GCAGCCCCTTCTTTCCCCTCCCAC....................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................TTTCCCAAGCGATGTTGCGGAGAGGGT................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................................GCAGCCCCTTCTTTCCCCT............................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................GCCCCTTCTTTCCCCTCCCACAT..................................................................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0 0 0
............................................................................................GCAGCCCCCTCTTTCTCCGCCCACAT..................................................................................................................................... 26 3 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................TGAGAGCAGCCCCTTCTTTCCCC............................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GAGGTGTGTATCGGTGGCT....... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................CAGACCCTTCTTTCCCCTCCCACAT..................................................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 1 0 0
...........................................................................................................................GGGTTTTCCCAAGCGATGTTGC.......................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................GGGCGGCTTTCACTAAATGT......................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................CCCTTCTTTCCCCTCCCACAT..................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................TCCCAAGCGATGTTGCGGAGAGGGT................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................AGCAGCCCCTTCTTTCCCCTC........................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0
....................................................................................................................................CAAGCGATGTTGCGGAGAGGGT................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................................GCAGCCCCATCTTTCCCCTCCCACA...................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................CCCCTTCTTTCCCCTCCCACAC..................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................GGCCGATGGTTTAATGTG................................................................ 18 2 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................................................CAAGCGATGTTGCGGAGAGGGTT................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGGGAGGTGTGTATCGGTGGCT....... 22 1 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGGGGAGGTGTGTATCGGTGGCT....... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................TGAGAGCAGCCCCCTCTTTCTCC............................................................................................................................................. 23 2 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................TTTTCCCAAGCGATGTTGCGGAGAGG................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................TTGGGTTTTCCCAAGCGATGTTGCGGA....................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGGAGGTATGAATCGATGG......... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_singleton_3671:17231-17481 + dps_2370 GA--CCCTGCAGAACGGATTAAATAGCCGCAACTCTGGCTCCCATCAATCAGTGCACTCTCACTAGA-AGAA-GGCGAAGCCA----------------------------------------TCTTCATGACTCTCGTCGGGGAAGAAAGGGGAGGGTGTAAAGAACCCA-------AAA--GGGTTCGCTACAACGCCTCTCCCAACACCCAATAAAGATCCGGCTACTAAATTACAAAACCTCGCC--CAAAGTGATTTACTACACGAACA------------CCCCCCCTCCACACATAGCCACC----GACTTCTTT
droPer2 scaffold_70:34267-34551 - GA--CCTGGCAGAACGGCTTAAATAGCCGCAACTCTGGCTCCCATCAATCAGTGCACTCTCACCAGA-AGAA-GGCGAAGCCATCCGAGCCAACAACCCACCGCCGCACGCCCCACGCACGGGTCTTCATGACTCTCGTCGGGGAAGAAAGGGGAGGGTGTAACGAACCCA-------AAA--GGGT-CGCTACAACGCCTCTCCCAACACCCAATAAAGATCCGGCTACTAAATTACAAAACCTCGCC--CAAAGTGATTTACTACACGAACA------------CCCCCCCTCCACACATAGCCACCG---------ATT
droWil2 scf2_1100000004967:2316019-2316033 + GTCACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCTCG
droVir3 scaffold_12100:42476-42526 + GCCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TGTACA---------TACGTAACACCTCCCT
droMoj3 scaffold_3989:1226-1283 + CAATCA---------------------------------------------GTGGAACACCACTGGA-AGAG-AGCGAGGCCC---GTTTCACGGACCCA------------------------------------CGGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGG
droGri2 scaffold_15101:121627-121656 + CTCTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAACC------GTCGGAACACTTCTCT
droAna3 scaffold_9741:5108-5230 - TCGCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAC--TTTTCCCTTCACTTGTT----ATCCGGTGGCCCAGGTACAAAAGCTCTTCCCTGAAGAAATGTGTTATCTGTGTTTATTCTTAAGTTTGCCGCCTCCAGTC------TTCGGAACACTTCCTT
droBip1 scf7180000393777:2699-2726 - CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAACC------ACCTGAATACCACTTT
droKik1 scf7180000301517:7281-7321 - GGTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACTTCAAACTCCCGCC--TACAG-------------------------------------------------------TGATTTACTAC
droFic1 scf7180000454157:36228-36328 + GTATAC---------------------------------------------------CGTCACTATCAAGAGTGACGGACACC----------------------------------------TCTTCATCGC--GCCGCGGGAAGAAAGGGGGGGGGGGTGACGAACCCACCTAGAAGGC--GGGTACGCCA------------------------------------------------------------------------------------------------------------------------------CAA
droEle1 scf7180000486331:481-528 + GGGAAG---------------------------------------------------------------------------------------------------------------------------------------------AAAGGGGGGGGTGTAACGTACACA-------CTTAGGTGTACGATA------------------------------------------------------------------------------------------------------------------------------CAA
droRho1 scf7180000772491:3356-3428 - GATCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGACCCAAATACACTACCCCGAT--TTAAGCG----------------------TAGATTCGCTTCTCGAAGGC------GCCGGAAGACTTCCCT
droBia1 scf7180000297643:20719-20757 + ACGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCGCCTTTCGTAGCC------GTCGGAAAACTTCTTG
droTak1 scf7180000415567:4599-4643 - GGTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAT--------------GTTCGCCTCCTTTAGAC------GCCGAAACACTTCTTT
droEug1 scf7180000407357:9715-9760 + AGTCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAACACGAGCA------------------GTGCCACCATAATAG----CCAACCAATTG
dm3 chr3LHet:1178021-1178048 - CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACACCTCCTT
droSim2 2r:382507-382534 + CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCCTT
droSec2 scaffold_46:197984-198006 - CACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGCC------AACA----AATCATTT
droYak3 v2_chr2L_random_031:159225-159253 + TCC-GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAGCC------TCCGGAAAACCTCTTT
droEre2 scaffold_4732:131259-131319 + CAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGTA--CAAAGCGT----CTGCACCATGA------------CGCCACTCCCAGGT------ACTGCCTCAGCTCCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GA--CCCTGCAGAACGGATTAAATAGCCGCAACTCTGGCTCCCATCAATCAGTGCACTCTCACTAGA-AGAA-GGCGAAGCCA----------------------------------------TCTTCATGACTCTCGTCGGGGAAGAAAGGGGAGGGTGTAAAGAACCCA-------AAA--GGGTTCGCTACAACGCCTCTCCCAACACCCAATAAAGATCCGGCTACTAAATTACAAAACCTCGCC--CAAAGTGATTTACTACACGAACA------------CCCCCCCTCCACACATAGCCACC----GACTTCTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................TACTACACGAACA------------CCCCCCCTCC..........................23131.001301300000000
.....................................................................................................................................................................................................................................................................TACTACACGAACA------------CCCCCCCTC...........................22130.6990700000200
.........................................CCATCAATCAGTGCACTCTCAC...................................................................................................................................................................................................................................................................22120.5870700000000
.....................................................................................................................................................................................................................................................................TACTACACGAACA------------CCCCCCCTCCA.........................24130.3850500000000
......................................................................................................................................................................................................................................TAAATTACAAAACCTCGCC--CAAAG..................................................................2430.3310100000000
...............................................................................................................................................................................................................................CGGCTACTAAATTACAAAACCTCG...........................................................................2430.3310100000000
...................................................................................................................................................................................................................................TACTAAATTACAAAACCTCGCC--C......................................................................2330.3310000000100
.................................................................................................................................TGACTCTCGTCGGGGAAGAAAGGGG........................................................................................................................................................................25180.3360000000600
..................................................................................................................................GACTCTCGTCGGGGAAGAAAGGG.........................................................................................................................................................................23190.3260400001100
...................................................................................................................................ACTCTCGTCGGGGAAGAAAGGG.........................................................................................................................................................................22200.3060000001230
...................................................................................................................................ACTCTCGTCGGGGAAGAAAGGGG........................................................................................................................................................................23200.2550400010000
.....................................................................................................................................................................................................................................................................TACTACACGAACA------------CCCCCCCT............................21130.2330300000000
...................................................................................................................................ACTCTCGTCGGGGAAGAAAGGGGT.......................................................................................................................................................................24200.2040000000400
................................................................................CCA----------------------------------------TCTTCATGACTCTCGTCGGGG..................................................................................................................................................................................2450.2010100000000
................................................................................................................................ATGACTCTCGTCGGGGAAGA..............................................................................................................................................................................2050.2010000000010
......................................................................AA-GGCGAAGCCA----------------------------------------TCTTCATGACTCTC.........................................................................................................................................................................................2650.2010010000000
.................................................................................................................................TGACTCTCGTCGGGGAAGAAAGGG.........................................................................................................................................................................24180.1730000000300
.................................................................................................................................TGACTCTCGTCGGGGAAGAAAGG..........................................................................................................................................................................23180.1730200000100
.................................................................................................................................TGACTCTCGTCGGGGAAGAAAGGGGAG......................................................................................................................................................................27180.1730000000030
...................................................................................................................................................................................................................CCAATAAAGATCCGGCTACTAAAT.......................................................................................24120.1720000000200
..................................................................................................................................GACTCTCGTCGGGGAAGAAAGG..........................................................................................................................................................................22190.1120200000000
..........................................................................................................................................................................................TTCGCTACAACGCCTCTCCCAACA................................................................................................................24100.1010100000000
.....................................................................................................................................................................................................................................................................TACTACACGAACA------------CCCCCCCTCCACAC......................27100.1010100000000
.....................................................................................................................................................................................................................................................................TACTACACGAACA------------CCCCCCCTCCACACA.....................28100.1010100000000
...................................................................................................................................ACTCTCGTCGGGGAAGAAAG...........................................................................................................................................................................20200.1020200000000
.....................................................................................................................................................................................................................................................................TACTACACGAACA------------CCCCCCCTCCACA.......................26100.1010010000000
.....................................................................................................................................................................................................................................................................TACTACACGAACA------------CCCCCCCTCCAC........................25110.0910001000000
..........................................CATCAATCAGTGCACTCTCA....................................................................................................................................................................................................................................................................20120.0810100000000
.........................................CCATCAATCAGTGCACTCTC.....................................................................................................................................................................................................................................................................20120.0810100000000
.........................................CCATCAATCAGTGCACTCTCA....................................................................................................................................................................................................................................................................21120.0810100000000
.........................................CCATCAATCAGTGCACTCTCC....................................................................................................................................................................................................................................................................21130.0810100000000
......................................................................................................................................................................................................................................................................ACTACACGAACA------------CCCCCCCT............................20130.0810100000000
......................................................................................................................................................................................................................................................................ACTACACGAACA------------CCCCCCCTCC..........................22130.0810100000000
.................................................................................................................................TGACTCTCGTCGGGGAAGAAAGGT.........................................................................................................................................................................24180.0610100000000
.................................................................................................................................TGACTCTCGTCGGGGAAGAAAG...........................................................................................................................................................................22190.0510100000000
..................................................................................................................................GACTCTCGTCGGGGAAGAAAGGGG........................................................................................................................................................................24190.0510000000100
..........................................................................................................................................TCGGGGAAGAAAGGGGAG......................................................................................................................................................................18200.0510000001000
.......................................................................................................................................................................CCCA-------AAA--GGGTTCGCTACAACGCCT.........................................................................................................................25200.0510100000000
...................................................................................................................................ACTCTCGTCGGGGAAGAAAGGA.........................................................................................................................................................................22200.0510000001000
......................................................................................................................................CTCGTCGGGGAAGAAAGGGG........................................................................................................................................................................20200.0510100000000
...................................................................................................................................ACTCTCGTCGGGGAAGAAA............................................................................................................................................................................19200.0510100000000
.......................................................................................................................................TCGTCGGGGAAGAAAGGGGAGGGTG..................................................................................................................................................................25200.0510000000010
..................................................................................................................................GACTCTCGTCGGGGAAGAAAG...........................................................................................................................................................................21200.0510100000000
.......................................................................................................................................TCGTCGGGGAAGAAAGGGGA.......................................................................................................................................................................20200.0510100000000
..................................................................................................................................GACTCTCGTCGGGGAAGAAA............................................................................................................................................................................20200.0510100000000
.......................................................................................................................................TCGTCGGGGAAGAAAGGGGT.......................................................................................................................................................................20200.0510010000000
...........................................................................................................................................CGGGGAAGAAAGGGGAGGG....................................................................................................................................................................19200.0510000010000
....................................................................................................................................CTCTCGTCGGGGAAGAAAGGGGA.......................................................................................................................................................................23200.0510100000000
....................................................................................................................................CTCTCGTCGGGGAAGAAAGGG.........................................................................................................................................................................21200.0510100000000
..........................................................................................................................................TCGGGGAAGAAAGGGGAGG.....................................................................................................................................................................19200.0510100000000
...................................................................................................................................ACTCTCGTCGGGGAAGAAAGGGGA.......................................................................................................................................................................24200.0510100000000
droPer2
GA--CCTGGCAGAACGGCTTAAATAGCCGCAACTCTGGCTCCCATCAATCAGTGCACTCTCACCAGA-AGAA-GGCGAAGCCATCCGAGCCAACAACCCACCGCCGCACGCCCCACGCACGGGTCTTCATGACTCTCGTCGGGGAAGAAAGGGGAGGGTGTAACGAACCCA-------AAA--GGGT-CGCTACAACGCCTCTCCCAACACCCAATAAAGATCCGGCTACTAAATTACAAAACCTCGCC--CAAAGTGATTTACTACACGAACA------------CCCCCCCTCCACACATAGCCACCG---------ATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................CACGGGTCTTCATGACTCTCGTCGGG...................................................................................................................................................................................2611.001010000
...................................................................................................................................ACTCTCGTCGGGGAAGAAAGGGG........................................................................................................................................................................23200.459090000
......................................................................................................................................CTCGTCGGGGAAGAAAGGGGA.......................................................................................................................................................................21200.153010002
.................................................................................................................................TGACTCTCGTCGGGGAAGAAAGG..........................................................................................................................................................................23200.102000002
...................................................................................................................................................AAAGGGGAGGGTGTAACGAAC..........................................................................................................................................................21200.102020000
.........................................CCATCAATCAGTGCACTCTCACC..................................................................................................................................................................................................................................................................23200.102010001
.......................TAGCCGCAACTCTGGCTCCCATCAAA.................................................................................................................................................................................................................................................................................26200.102020000
.......................................................................................................................................TCGTCGGGGAAGAAAGGGGAG......................................................................................................................................................................21200.102010001
...............................................................................................................................................GAAGAAAGGGGAGGGTGTAA...............................................................................................................................................................20200.102000002
.................................................................................................................................................................................................CAACGCCTCTCCCAACACC..............................................................................................................19150.071010000
......................................................................................................................................CTCGTCGGGGAAGAAAGGGGT.......................................................................................................................................................................21200.051010000
.........................................CCATCAATCAGTGCACTCTCA....................................................................................................................................................................................................................................................................21200.051010000
.........................................................TCTCACCAGA-AGAA-GGCGAAGCCATC.............................................................................................................................................................................................................................................26200.051010000
........................................................................................................................................CGTCGGGGAAGAAAGGGGAG......................................................................................................................................................................20200.051010000
...................................................................................................................................ACTCTCGTCGGGGAAGAAAGGGT........................................................................................................................................................................23200.051000001
......................................................................................................................................CTCGTCGGGGAAGAAAGGT.........................................................................................................................................................................19200.051010000
...................................................................................TCCGAGCCAACAACCCACCGCCGCACGC...................................................................................................................................................................................................................28200.051010000
.........................................CCATCAATCAGTGCACTCTCAC...................................................................................................................................................................................................................................................................22200.051010000
....................................................................................................CCGCCGCACGCCCCACGCACGGGTCTT...................................................................................................................................................................................................27200.051010000
....................................................................................................................................CTCTCGTCGGGGAAGAAAGGGG........................................................................................................................................................................22200.051000001
........................................................................................................................................CGTCGGGGAAGAAAGGGGAGG.....................................................................................................................................................................21200.051000001
....................................................................................................................................CTCTCGTCGGGGAAGAAAGG..........................................................................................................................................................................20200.051010000
...........................................................................................................................................CGGGGAAGAAAGGGGAGGGTGTTT...............................................................................................................................................................24200.051010000
............................................................CACCAGA-AGAA-GGCGAAGCCATC.............................................................................................................................................................................................................................................23200.051010000
.................................................................GA-AGAA-GGCGAAGCCATCCGAGCCAA.....................................................................................................................................................................................................................................26200.051010000
.........................................................................................................................................GTCGGGGAAGAAAGGGGAGGT....................................................................................................................................................................21200.051000001
.................................................................................................................................TGACTCTCGTCGGGGAAGT..............................................................................................................................................................................19200.051000001
.............................................................ACCAGA-AGAA-GGCGAAGCCAT..............................................................................................................................................................................................................................................21200.051000001
..............................................................................................................................................GGAAGAAAGGGGAGGGTG..................................................................................................................................................................18200.051010000
...............................................................................................................................................GAAGAAAGGGGAGGGTGT.................................................................................................................................................................18200.051010000
droWil2
GTCACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCTCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GCCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TGTACA---------TACGTAACACCTCCCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TG.............................262614.00122810160101452131910000002500173861112152139612168112742139926291500000000000000000001010
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--...............................24296.00192006100331000110000002007541882620281666171185700000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--T..............................25295.501910011111411118000000013005471410272128844171233700000000000000000000010
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TGT............................27278.5015710311200000151000000000666202317948140911530100000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CG..................................23212.0024001000000000000000001002311051012012001200000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TGTA...........................2827.0014000000000000000000000000042320010000020000000000000000000000000
....TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TG.............................2726.5013001010010000000000000000022300100010010000000000000000000000000
....................................................................................................................................................................................................................................................................TTTCTACTCGCGTA------------CGC--TGTACA---------TACG............2724.509001000000000000000000000000410000001101000000000000000000000000
..............................................................................................................................................................................................................................................................AGCAACTTTCTACTCGCGTA------------CGC--TG.............................2524.008003000000000000000000000000120001000100000000000000000000000000
.....................................................................................................................................................................................................................................................................TTCTACTCGCGTA------------CGC--TGTACA---------TACG............2623.507000000000000000000000000001032000001000000000000000000000000000
..................................................................................................................................................................................................................................................................ACTTTCTACTCGCGTA------------CGC--TGTACA---------................2523.006000010000000100000000001000003000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AACTTTCTACTCGCGTA------------CGC--TG.............................2223.006000000002000000000001000001000001001000000000000000000000000000
...TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--...............................2623.006001000000000000000000001100000010001000100000000000000000000000
....TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--...............................2523.006001000000000000000002000000010000010100000000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------C...................................2222.505000000000000000000000000200110001000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCTACTCGCGTA------------CGC--TGTACA---------TACGT...........2622.004001000000000000000000000000010000100000100000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------....................................2122.004000000000000100000000000000000001000000200000000000000000000000
.....................................................................................................................................................................................................................................................................TTCTACTCGCGTA------------CGC--TG.............................1821.503000000000000000000000000100010000000001000000000000000000000000
.................................................................................................................................................................................................................................................................AACTTTCTACTCGCGTA------------CGC--TGTACA---------................2621.503000000000000000000000000000110000000000100000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TGTAC..........................2921.503000000000000000000000000002100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CTTTCTACTCGCGTA------------CGC--TG.............................2021.002001000000000000000000000000000000001000000000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGT.................................................2021.002000000100000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................................................AGCAACTTTCTACTCGCGTA------------CGC--TGT............................2621.002001000000000000000000000000010000000000000000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TGTC...........................2821.002000000000000000000000000000110000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TTTCTACTCGCGTA------------CGC--TGTACA---------................2321.002000002000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TTTCTACTCGCGTA------------CGC--TG.............................1921.002001000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TCGCGTA------------CGC--TGTACA---------TACGTAACACCC....2820.501000000000000000000000000000000000000000100000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TGG............................2720.501100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GCAACTTTCTACTCGCGTA------------CGC--TGT............................2520.501000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TTCTACTCGCGTA------------CGC--TGTACA---------TAC.............2520.501000000000000000000000000000000000000000100000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------T...................................2220.501000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AACTTTCTACTCGCGTA------------CGC--TGT............................2320.501000000000000000000000001000000000000000000000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGC...................................................1820.501000000000000000000000001000000000000000000000000000000000000000
....TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCG..................................................2020.501000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TTTCTACTCGCGTA------------CGC--TGTACA---------TACGT...........2820.501000000000000000000000000000000000000100000000000000000000000000
....TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CAA--...............................2520.501000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AACTTTCTACTCGCGTA------------CGC--TGTAC..........................2520.501000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CAACTTTCTACTCGCGTA------------CGC--TGT............................2420.501000000000000000000000000000100000000000000000000000000000000000
..CTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCG....................................................2020.501000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................CAACTTTCTACTCGCGTA------------CGC--TGTACA---------................2720.501000000000000000000000000000000001000000000000000000000000000000
....TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CG..................................2420.501000000000000000000000000000010000000000000000000000000000000000
GCCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------C...................................2720.501000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TTCTACTCGCGTA------------CGC--TGTACA---------T...............2320.501000010000000000000000000000000000000000000000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TGTT...........................2820.501000000000000000000000000001000000000000000000000000000000000000
..CTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------C...................................2520.501000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TTCTACTCGCGTA------------CGC--TGTACA---------................2220.501000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................ACTTTCTACTCGCGTA------------CGC--TG.............................2120.501000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CTTTCTACTCGCGTA------------CGC--TGTACA---------TC..............2620.501000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TTCTACTCGCGTA------------CGC--TGTACA---------TACGTA..........2820.501001000000000000000000000000000000000000000000000000000000000000
..CTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--...............................2720.501000000000000000000000000000000000000010000000000000000000000000
....TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--T..............................2620.501000000000000000000000000000100000000000000000000000000000000000
GCCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--...............................2920.501000000000000000000000000000010000000000000000000000000000000000
....TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TGT............................2820.501000010000000000000000000000000000000000000000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TT.............................2620.501000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................TCGCGTA------------CGC--TGTACA---------TACGTAACACC.....2720.501000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCTACTCGCGTA------------CGC--TGTACA---------TACGTAA.........2820.501000000000000000000000000000000000000001000000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TGC............................2720.501000100000000000000000000000000000000000000000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TC.............................2620.501000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CTTTCTACTCGCGTA------------CGC--TGTACA---------TACG............2820.501000000000000000000000000000010000000000000000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TA.............................26120.425000000000000000000001003000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................ACTTTCTACTCGCGTA------------CGC--T..............................20110.364000000001000000000000000111000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CAACTTTCTACTCGCGTA------------CGC--T..............................22110.273000000010000000000000000000000000000000000000000101000000000000
..CTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGTTC.................................................2350.201000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AGCAACTTTCTACTCGCGTA------------CGC--...............................23120.172000010000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................................................AACTTTCTACTCGCGTA------------CGC--...............................20120.172000000100000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................ACTTTCTACTCGCGTA------------CGC--...............................19120.172000010000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AGCAACTTTCTACTCGCGTA------------CGC--T..............................24110.091000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AACTTTCTACTCGCGTA------------CGC--T..............................21110.091000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AGCAACTTTCTACTCGCGTA------------CGC--TC.............................25110.091001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GCAACTTTCTACTCGCGTA------------CGC--...............................22120.081001000000000000000000000000000000000000000000000000000000000000
.....A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACTTTCTACTCGCGTA------------CGC--TAC............................27120.081000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GCAACTTTCTACTCGCGTA------------C...................................20140.071000000000000000000000000100000000000000000000000000000000000000
droMoj3
CAATCA---------------------------------------------GTGGAACACCACTGGA-AGAG-AGCGAGGCCC---GTTTCACGGACCCA------------------------------------CGGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................CACCACTGGA-AGAG-AGCGAGGCCC---GT..........................................................................................................................................................................................................................................2680.131100000
.........................................................CACCACTGGA-AGAG-AGCGAGGCCC---G...........................................................................................................................................................................................................................................2580.131100000
..............................................................CTGGA-AGAG-AGCGAGGCCC---GTTTCACGG...................................................................................................................................................................................................................................2880.131100000
droGri2
CTCTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAACC------GTCGGAACACTTCTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TCGCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAC--TTTTCCCTTCACTTGTT----ATCCGGTGGCCCAGGTACAAAAGCTCTTCCCTGAAGAAATGTGTTATCTGTGTTTATTCTTAAGTTTGCCGCCTCCAGTC------TTCGGAACACTTCCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................TCCCTTCACTTGTT----ATCCGGTGGCCC..........................................................................................26110.091100000
..........................................................................................................................................................................................................TCCCTTCACTTGTT----ATCCGGTGGC............................................................................................24130.081100000
..........................................................................................................................................................................................................................................................................TCTGTGTTTATTCTTAAGTTTGCCGCC.............................27150.071010000
..........................................................................................................................................................................................................................................................................TCTGTGTTTATTCTTAAGTTTGCC................................24150.071010000
...................................................................................................................................................................................................................TTGTT----ATCCGGTGGCCCAGGTACAT..................................................................................25200.051100000
...................................................................................................................................................................................................................TTGTT----ATCCGGTGGCCCAGGT......................................................................................21200.051100000
..............................................................................................................................................................................................................................................................................TGTTTATTCTTAAGTTTGCCGCC.............................23200.051010000
droBip1
CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAACC------ACCTGAATACCACTTTSizeHit CountTotal NormTotal
No Reads
droKik1
GGTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACTTCAAACTCCCGCC--TACAG-------------------------------------------------------TGATTTACTACSizeHit CountTotal NormTotal
No Reads
droFic1
GTATAC---------------------------------------------------CGTCACTATCAAGAGTGACGGACACC----------------------------------------TCTTCATCGC--GCCGCGGGAAGAAAGGGGGGGGGGGTGACGAACCCACCTAGAAGGC--GGGTACGCCA------------------------------------------------------------------------------------------------------------------------------CAASizeHit CountTotal NormTotal
No Reads
droEle1
GGGAAG---------------------------------------------------------------------------------------------------------------------------------------------AAAGGGGGGGGTGTAACGTACACA-------CTTAGGTGTACGATA------------------------------------------------------------------------------------------------------------------------------CAASizeHit CountTotal NormTotal
No Reads
droRho1
GATCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGACCCAAATACACTACCCCGAT--TTAAGCG----------------------TAGATTCGCTTCTCGAAGGC------GCCGGAAGACTTCCCTSizeHit CountTotal NormTotal
No Reads
droBia1
ACGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCGCCTTTCGTAGCC------GTCGGAAAACTTCTTGSizeHit CountTotal NormTotal
No Reads
droTak1
GGTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAT--------------GTTCGCCTCCTTTAGAC------GCCGAAACACTTCTTTSizeHit CountTotal NormTotal
No Reads
droEug1
AGTCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAACACGAGCA------------------GTGCCACCATAATAG----CCAACCAATTGSizeHit CountTotal NormTotal
No Reads
dm3
CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACACCTCCTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACT.......1923.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACACCTCCTT2622.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACACCTCCT.2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACACCTCC..2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACT.......1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACACCTCCTT2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACACCTC...2321.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CCGTAGCC------TCTGGAACACCTCCTT2430.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CGTAGCC------TCTGGAACACCTCCTT2330.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAAC........2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACAC......2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACACCTCCTT2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAACACCT....2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTGGAAC........1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TAGCC------TCTGGAACACCTCCT.2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TAGCC------TCTGGAACACCTCC..1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TAGCC------TCTGGAACACCTC...1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCCTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCCTT272111.50223005000129216620000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCC..25248.009600310044182460000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCCT.26230.00600010002482520000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTC...24224.50490080001622010020000
.......................................................................................................................................................................................................................................................................................................TAGCC------TCTTGAACACCT....17310.0030000000030000000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCT....2329.501900500039110000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCCTT2628.0016001000111300000000
.....C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCCTT2525.001000000071200000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCC..2423.00600100022100000000
CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCC..2623.00600000051000000000
........................................................................................................................................................................................................................................................................................................AGCC------TCTTGAACACCT....1633.00900000009000000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCCT.2522.00400000031000000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACC.....2222.00400000021100000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTC...2321.50300000011100000000
CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTC...2521.50300000012000000000
....................................................................................................................................................................................................................................................................................................CCGTAGCC------TCTTGAACACCTCCTT2421.50300000010110000000
.....................................................................................................................................................................................................................................................................................................CGTAGCC------TCTTGAACACCT....1921.50300000003000000000
....................................................................................................................................................................................................................................................................................................CCGTAGCC------TCTTGAACACCT....2021.00200000002000000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCT....2221.00200000011000000000
.....C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCT....2121.00200000002000000000
CC--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACAC......2221.00200000001100000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAA.........1821.00200000020000000000
......................................................................................................................................................................................................................................................................................................GTAGCC------TCTTGAACACCTCC..2030.67200000000020000000
.......................................................................................................................................................................................................................................................................................................TAGCC------TCTTGAACACC.....1630.67200000002000000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAAC........1920.50100000000100000000
.....C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACC.....2020.50100000010000000000
.....C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTCCT.2420.50100000010000000000
.....................................................................................................................................................................................................................................................................................................CGTAGCC------TCTTGAACACCTCC..2120.50100000001000000000
....................................................................................................................................................................................................................................................................................................CCGTAGCC------TCTTGAACACC.....1920.50100000001000000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACAC......2120.50100100000000000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCA....2320.50100100000000000000
.....C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAA.........1620.50100000001000000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTATA.2620.50100000001000000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACACCTAAA.2620.50100100000000000000
.....................................................................................................................................................................................................................................................................................................CGTAGCC------TCTTGAACACCTCCTT2320.50100000000100000000
.C--GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTAGCC------TCTTGAACTAT.....2220.50100000001000000000
......................................................................................................................................................................................................................................................................................................GTAGCC------TCTTGAACACCTCCT.2130.33100000000100000000
......................................................................................................................................................................................................................................................................................................GTAGCC------TCTTGAACACCA....1830.33100000010000000000
.......................................................................................................................................................................................................................................................................................................TAGCC------TCTTGAACACCTCCTT2130.33100000000100000000
.......................................................................................................................................................................................................................................................................................................TAGCC------TCTTGAACACCTA...1830.33100000000010000000
..........................................................................................................................................................................................................................................................................................................CC------TCTTGAACACCTCCTT1840.25100000000100000000
.........................................................................................................................................................................................................................................................................................................GCC------TCTTGAACACCT....1540.25100000001000000000
...........................................................................................................................................................................................................................................................................................................C------TCTTGAACACCTCCTT1740.25100000010000000000
droSec2
CACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGCC------AACA----AATCATTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCC-GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAGCC------TCCGGAAAACCTCTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAGCC------TCCGGAAAACCTCTT.25200.10202000000000
..C-GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAGCC------TCCGGAAAACCTCTTT27200.05101000000000
....................................................................................................................................................................................................................................................................................................CCTTAGCC------TCCGGAAAACCTC...21200.05100100000000
....GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAGCC------TCCGGAAAAC......20200.05101000000000
droEre2
CAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGTA--CAAAGCGT----CTGCACCATGA------------CGCCACTCCCAGGT------ACTGCCTCAGCTCCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................TGA------------CGCCACTCCCAGGT------ACTGCCTCAGC.....28170.4177000000
.............................................................................................................................................................................................................................................................................CATGA------------CGCCACTCCCAGGT------ACTGCC..........25180.3976100000
...............................................................................................................................................................................................................................................................................TGA------------CGCCACTCCCAGGT------ACTGCCTCA.......26180.3366000000
...............................................................................................................................................................................................................................................................................TGA------------CGCCACTCCCAGGT------ACTGCCTC........25190.2655000000
................................................................................................................................................................................................................................................................................GA------------CGCCACTCCCAGGT------ACTGCCTCAGC.....27200.2555000000
.............................................................................................................................................................................................................................................................................CATGA------------CGCCACTCCCAGGT------ACTGC...........24190.2144000000
................................................................................................................................................................................................................................................................................GA------------CGCCACTCCCAGGT------ACTGCCTCA.......25200.2044000000
....................................................................................................................................................................................................................................................................................................TCCCAGGT------ACTGCCTCAGCTCC..22200.2044000000
.............................................................................................................................................................................................................................................................................CATGA------------CGCCACTCCCAGGT------ACTGCCTC........27180.1733000000
....................................................................................................................................................................................................................................................................................................TCCCAGGT------ACTGCCTCAGCTCCTT24200.1533000000
...............................................................................................................................................................................................................................................................................TGA------------CGCCACTCCCAGGT------AC..............19200.1533000000
...............................................................................................................................................................................................................................................................................TGA------------CGCCACTCCCAGGT------ACTGCCTCAG......27180.1122000000
.............................................................................................................................................................................................................................................................................CATGA------------CGCCACTCCCAGGT------AC..............21190.1122000000
.............................................................................................................................................................................................................................................................................CATGA------------CGCCACTCCCAGGT------ACTG............23190.1122000000
.......................................................................................................................................................................................................................................................................................................CAGGT------ACTGCCTCAGCTCC..19200.1021100000
.....................................................................................................................................................................................................................................................................................................CCCAGGT------ACTGCCTCAGC.....18200.1022000000
............................................................................................................................................................................................................................................................................CCATGA------------CGCCACTCCCAGGT------ACTGCC..........26180.0611000000
...........................................................................................................................................................................................................................................................................ACCATGA------------CGCCACTCCCAGGT------ACTGCC..........27180.0611000000
..............................................................................................................................................................................................................................................................................ATGA------------CGCCACTCCCAGGT------ACTGCCG.........25180.0611000000
.............................................................................................................................................................................................................................................................................CATGA------------CGCCACTCCCAGGT------ACTGCCTCAG......29180.0611000000
.............................................................................................................................................................................................................................................................................CATGA------------CGCCACTCCCAGGT------ACTGCCTCA.......28180.0611000000
.............................................................................................................................................................................................................................................................................CATGA------------CGCCACTCCCAGGT------A...............20190.0511000000
...............................................................................................................................................................................................................................................................................TGA------------CGCCACTCCCAGGT------ACTGCC..........23190.0511000000
...............................................................................................................................................................................................................................................................................TGA------------CGCCACTCCCAGGT------ACTGCCT.........24190.0511000000
...........................................................................................................................................................................................................................................................................ACCATGA------------CGCCACTCCCAGGT------AC..............23190.0511000000
.............................................................................................................................................................................................................................................................................CATGA------------CGCCACTCCCAGGT------ACA.............22190.0510001000
.................................................................................................................................................................................................................................................................................................CACTCCCAGGT------ACTGCCTCAGCTCCT.26200.0511000000
..............................................................................................................................................................................................................................................................................................CGCCACTCCCAGGT------ACTGCCTCAGCT....26200.0511000000
....................................................................................................................................................................................................................................................................................................TCCCAGGT------ACTGCCTCAGCTCCAA24200.0511000000
...............................................................................................................................................................................................................................................................................TGA------------CGCCACTCCCAGGT------ACA.............20200.0511000000
................................................................................................................................................................................................................................................................................GA------------CGCCACTCCCAGGT------ACTGCCTCAG......26200.0511000000
..............................................................................................................................................................................................................................................................................................CGCCACTCCCAGGT------ACTGCCTCAGCTC...27200.0511000000
.................................................................................................................................................................................................................................................................................................CACTCCCAGGT------ACTGCCTCAGCTCC..25200.0511000000

Generated: 05/18/2015 at 04:23 AM