ID:

dps_2369

 Coordinate:

Unknown_singleton_3671:17046-17196 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.3 -16.1 -16.0

Flybase annnotation

CDS [Dpse\GA27691-cds]; exon [dpse_GLEANR_6711:1]; intron [Dpse\GA27691-in]

Repeatable elements

NameClassFamilyStrand
Gypsy9-I_Dpse-intLTRGypsy+
mature
  1. Unknown_group_721:5105-5124 -
  2. Unknown_group_242:10173-10192 -
  3. Unknown_singleton_3671:760-779 -
  4. Unknown_singleton_3671:4469-4488 +
  5. Unknown_singleton_3671:10216-10235 +
  6. dps_2369  Unknown_singleton_3671:17144-17163 +
  7. Unknown_singleton_3738:1130-1149 -
  8. Unknown_singleton_2527:835-854 -
  9. Unknown_singleton_3873:260-279 +
  10. Unknown_group_583:437-456 +
  11. Unknown_singleton_3643:114-133 -
  12. Unknown_singleton_1353:411-430 +
  13. Unknown_singleton_1230:1571-1590 -
star
  1. Unknown_group_242:10229-10256 -
  2. dps_2369  Unknown_singleton_3671:17080-17107 +
  3. Unknown_singleton_3738:1186-1213 -
  4. Unknown_singleton_2527:891-918 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGGCACCGCAAAGTCGGCAGAACCCGGGGCACCCGGCCAAGAGAAACAACGTCAGCGAAACACCGACCGGCGGCGCCACGCCAATAACAACGCGAGCGCAACAAACCCCTTGACAGCGAAGTAAACAGACCCGCTAACGAGGCAGGGGACGAGATGATCGCAAGTCGGCGGCGACCCCAAAACGCACCCCCGGTGCAGCACGGAAGAGAGGAGAAAAGCTTGCTCCGCAAGTACGGACCCTGCAGAACGGA
************************************************************************************.......((((..........(((((((..((((..((......)).))))..))))...)))..........)))).......*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 SRR902010
ovaries
 V112
male body		 M059
embryo
 M022
male body
............................................AACAACGTCAGCGAAACACCGACC....................................................................................................................................................................................... 24 0 9 2.44 22 21 0 0 0 1 0
............................................AACAACGTCAGCGAAACACCGAC........................................................................................................................................................................................ 23 0 9 0.44 4 3 0 0 0 1 0
....................................................................................................................................................ACGAGATGATCGCAAGTCGG................................................................................... 20 0 13 0.31 4 0 3 0 0 0 1
....................................................................................TAACAACGCGAGCGCAACAAACCCCTTG........................................................................................................................................... 28 0 4 0.25 1 1 0 0 0 0 0
................................................................................CCAATAACAACGCGAGCGCAACAAA.................................................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0
..................................................GTCAGCGAAACACCGACCGGCGG.................................................................................................................................................................................. 23 0 20 0.25 5 5 0 0 0 0 0
............................................AACAACGTCAGCGAAACACCGACCG...................................................................................................................................................................................... 25 0 9 0.22 2 2 0 0 0 0 0
............................................AACAACGTCAGCGAAACACCGA......................................................................................................................................................................................... 22 0 9 0.22 2 2 0 0 0 0 0
.................................................................................................................................................................................................TGCAGCACGGAAGAGAGGAGAAAAGC................................ 26 0 5 0.20 1 0 1 0 0 0 0
.................................................................................................................................................................................................TGCAGCACGGAAGAGAGGAGAAAAG................................. 25 0 5 0.20 1 0 0 1 0 0 0
..........................................................................................CGCGAGCGCAACAAACCCCTTGA.......................................................................................................................................... 23 0 5 0.20 1 1 0 0 0 0 0
..........................................................................................CGCGAGCGCAACAAACCCCTTGAC......................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0
.............................................ACAACGTCAGCGAAACACCGACC....................................................................................................................................................................................... 23 0 16 0.19 3 3 0 0 0 0 0
..........................................................................................................................................................TGATCGCAAGTCGGCGGCGACCCCA........................................................................ 25 0 11 0.18 2 1 0 1 0 0 0
.....................................................................................................................................................................................................................................AGTACGGACCCTGCAGAACGG. 21 0 6 0.17 1 0 1 0 0 0 0
................................................................................................................................................................................................................................CCGCAGGTACGGACCTTG......... 18 2 6 0.17 1 1 0 0 0 0 0
.....................................................................................................................................................CGAGATGATCGCAAGTCGG................................................................................... 19 0 13 0.15 2 0 2 0 0 0 0
......................................................................................................................................TAACGAGGCAGGGGACGAGAT................................................................................................ 21 0 7 0.14 1 0 0 0 1 0 0
.............................................ACAACGTCAGCGAAACACCGAC........................................................................................................................................................................................ 22 0 16 0.13 2 2 0 0 0 0 0
...........................................AAACAACGTCAGCGAAACACCGACC....................................................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0 0
............................................AACAACGTCAGCGAAACACCG.......................................................................................................................................................................................... 21 0 9 0.11 1 1 0 0 0 0 0
............................................AACAACGTCAGCGGAACACCGACCG...................................................................................................................................................................................... 25 1 9 0.11 1 1 0 0 0 0 0
..................................................GTCAGCGAAACACCGACCGGCGGC................................................................................................................................................................................. 24 0 18 0.11 2 2 0 0 0 0 0
............................................AACAACGTCAGCGAAACACCGACCGGC.................................................................................................................................................................................... 27 0 9 0.11 1 1 0 0 0 0 0
.....................................................................................AACAACGCGAGCGCAACAAACCCC.............................................................................................................................................. 24 0 10 0.10 1 1 0 0 0 0 0
....................................................................................................................................................................TCGGCGGCGACCCCAAAACGCACCCC............................................................. 26 0 10 0.10 1 1 0 0 0 0 0
.......................................................................................CAACGCGAGCGCAACAAACC................................................................................................................................................ 20 0 11 0.09 1 0 0 0 1 0 0
....................................................................................................................................................................TCGGCGGCGACCCCAAAACGCAC................................................................ 23 0 11 0.09 1 1 0 0 0 0 0
..............CGGCAGAACCCGGGGCACC.......................................................................................................................................................................................................................... 19 0 12 0.08 1 1 0 0 0 0 0
...................................................................................................................................................GACGAGATGATCGCAAGTCGGCGGC............................................................................... 25 0 12 0.08 1 1 0 0 0 0 0
...................................................TCAGCGAAACACCGACCGGCGGCGCCA............................................................................................................................................................................. 27 0 12 0.08 1 1 0 0 0 0 0
...................................................................................................................................................GACGAGACGATCGCAAGTCGGCGGC............................................................................... 25 1 12 0.08 1 1 0 0 0 0 0
...........AGTCGGCAGAACCCGGGGCACCCGGCC..................................................................................................................................................................................................................... 27 0 12 0.08 1 1 0 0 0 0 0
..........................................................................................................................................................TGATCGCAAGTCGGCGGCGACCC.......................................................................... 23 0 12 0.08 1 1 0 0 0 0 0
........................................................................................................................................................GATGATCGCAAGTCGGCGGC............................................................................... 20 0 12 0.08 1 1 0 0 0 0 0
.............TCGGCAGAACCCGGGGCACCCGGCCA.................................................................................................................................................................................................................... 26 0 12 0.08 1 1 0 0 0 0 0
.................................................................................................................................................GGGACGAGATGATCGCAAGTCGGCGGC............................................................................... 27 0 12 0.08 1 0 1 0 0 0 0
....................................................................................................................................................ACGAGATGATCGCAAGTCGGCGGCGA............................................................................. 26 0 12 0.08 1 1 0 0 0 0 0
.............TCGGCAGAACCCGGGGCACCCGGCC..................................................................................................................................................................................................................... 25 0 12 0.08 1 1 0 0 0 0 0
.....................................................................................................................................................CGAGATGATCGCAAGTCGGCGGC............................................................................... 23 0 12 0.08 1 1 0 0 0 0 0
..............CGGCAGAACCCGGGGCACCCGGC...................................................................................................................................................................................................................... 23 0 12 0.08 1 0 0 1 0 0 0
.....................................................................................................................GAAGTAAACAGACCCGCTAACG................................................................................................................ 22 0 12 0.08 1 1 0 0 0 0 0
.....................................CAAGAGAAACGCCGTCAGC................................................................................................................................................................................................... 19 2 12 0.08 1 1 0 0 0 0 0
..........................................................................................................................................................TGATCGCAAGTCGGCGGCGACA........................................................................... 22 1 12 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................AGATGATCGCAAGTCGGCGG................................................................................ 20 0 13 0.08 1 0 1 0 0 0 0
........................................................GAAACACCGACCGGCGGCGCCA............................................................................................................................................................................. 22 0 13 0.08 1 1 0 0 0 0 0
........................................................GAAACACCGGCCGGCGGCGCCA............................................................................................................................................................................. 22 1 13 0.08 1 1 0 0 0 0 0
....................................................................................................................................................ACGAGATGATCGCAAGTCGGCGG................................................................................ 23 0 13 0.08 1 1 0 0 0 0 0
.......................................................................................................................AGTAAACAGACCCGCTAACGAGGC............................................................................................................ 24 0 13 0.08 1 1 0 0 0 0 0
...................................................................................................................................................GACGAGATGATCGCAAGTCGGCGG................................................................................ 24 0 13 0.08 1 0 0 1 0 0 0
....................................................................................................................................................ACGAGATGATCGCAAGTCGGC.................................................................................. 21 0 13 0.08 1 1 0 0 0 0 0
..................................................................................................................................................GGACGAGATGATCGCAAGTCGG................................................................................... 22 0 13 0.08 1 0 1 0 0 0 0
......................................................................................................................................................................................................CAGGGAAGATAGGAGAAAA.................................. 19 2 14 0.07 1 0 0 0 1 0 0
..................AGAACCCGGGGCACCCGGCC..................................................................................................................................................................................................................... 20 0 15 0.07 1 1 0 0 0 0 0
.............................................ACAACGTCAGCGAAACAC............................................................................................................................................................................................ 18 0 16 0.06 1 1 0 0 0 0 0
.............................................ACAACGTCAGCGAAACACCGACCGG..................................................................................................................................................................................... 25 0 16 0.06 1 1 0 0 0 0 0
..............................................CAACGTCAGCGAAACACCGACCG...................................................................................................................................................................................... 23 0 17 0.06 1 1 0 0 0 0 0
......................................................GCGAAACACCGACCGGCGGCGC............................................................................................................................................................................... 22 0 18 0.06 1 1 0 0 0 0 0
.................................................CGTCAGCGAAACACCGACCGGC.................................................................................................................................................................................... 22 0 19 0.05 1 1 0 0 0 0 0
...................................................TCAGCGAAACACCGACCGGCGG.................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
.......................................................CGACACACTGACCGGTGGCG................................................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0
..................................................GTCAGCGAAACACCGACCGGCGT.................................................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0
..................................................GTCAGCGAAACACCGACCGGC.................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GCCGTGGCGTTTCAGCCGTCTTGGGCCCCGTGGGCCGGTTCTCTTTGTTGCAGTCGCTTTGTGGCTGGCCGCCGCGGTGCGGTTATTGTTGCGCTCGCGTTGTTTGGGGAACTGTCGCTTCATTTGTCTGGGCGATTGCTCCGTCCCCTGCTCTACTAGCGTTCAGCCGCCGCTGGGGTTTTGCGTGGGGGCCACGTCGTGCCTTCTCTCCTCTTTTCGAACGAGGCGTTCATGCCTGGGACGTCTTGCCT
***********************************************************************************.......((((..........(((((((..((((..((......)).))))..))))...)))..........)))).......************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 SRR902011
testis
 M059
embryo
 GSM444067
head
 M062
head
 M022
male body		 GSM343916
embryo
....................................GGCTCTCTTTGCGGCAGTC.................................................................................................................................................................................................... 19 3 20 9.95 199 184 0 15 0 0 0 0 0 0
................................GGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 22 0 8 6.75 54 50 1 0 1 1 0 0 0 1
...............................GGGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 23 0 8 5.75 46 45 1 0 0 0 0 0 0 0
....................................GGTTCTCTTTGCGGCAGTC.................................................................................................................................................................................................... 19 2 10 3.40 34 31 0 2 0 0 0 0 1 0
..............................TGGGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 24 0 8 3.00 24 21 1 0 1 0 1 0 0 0
.............................GTGGGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 25 0 8 2.38 19 19 0 0 0 0 0 0 0 0
...................................GGGTTCTCTTTGCGGCAGTC.................................................................................................................................................................................................... 20 3 15 2.27 34 27 0 7 0 0 0 0 0 0
...........................................................................GGTGCGGTTATTGTTGCGCTCGCGT....................................................................................................................................................... 25 0 2 2.00 4 4 0 0 0 0 0 0 0 0
..................................CCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 20 0 8 1.75 14 14 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCAGCCGCCGCTGGGGTTTTGCGT................................................................. 24 0 10 1.70 17 16 0 1 0 0 0 0 0 0
.................................GCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 21 0 8 1.63 13 12 0 0 0 1 0 0 0 0
..................................................................GGCCGCCGCGGTGCGGTTATTGT.................................................................................................................................................................. 23 0 2 1.50 3 3 0 0 0 0 0 0 0 0
.................................................GCAGTCGCTTTGTGGCTGGCCGCCGC................................................................................................................................................................................ 26 0 17 1.18 20 19 1 0 0 0 0 0 0 0
...............................GGGCCGGTTCTCTTTGTTGCAG...................................................................................................................................................................................................... 22 0 8 1.00 8 8 0 0 0 0 0 0 0 0
...................................CGGTTCTCTTTGTTGCAGTCGCTTT............................................................................................................................................................................................... 25 0 8 0.88 7 2 5 0 0 0 0 0 0 0
...................................CGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 19 0 8 0.88 7 7 0 0 0 0 0 0 0 0
............................CGTGGGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 26 0 8 0.63 5 5 0 0 0 0 0 0 0 0
...............................................................GCTGGCCGCCGCGGTGCGGTTAT..................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................CCGCCGCGGTGCGGTTATTG................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................................GGCCGGTTCTCTTTGTTGCAG...................................................................................................................................................................................................... 21 0 8 0.50 4 4 0 0 0 0 0 0 0 0
...........................................................................GGTGCGGTTATTGTTGCGCTCGCGTG...................................................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................CTGGCCGCCGCGGTGCGGTTATTGT.................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................GGCTGGCCGCCGCGGTGCGGTTATT.................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................GTTCTCTTTGCGGCAGTC.................................................................................................................................................................................................... 18 2 15 0.47 7 7 0 0 0 0 0 0 0 0
...................................................................................................................................................................CAGCCGCCGCTGGGGTTTTGCGT................................................................. 23 0 11 0.45 5 5 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GGGCCACGTCGTGCCTTCTCTCCTCT..................................... 26 0 5 0.40 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGGGGCCACGTCGTGCCTTCTCTCCT....................................... 26 0 5 0.40 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CACGTCGTGCCTTCTCTCCTCT..................................... 22 0 5 0.40 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGCCACGTCGTGCCTTCTCTCCTCT..................................... 25 0 5 0.40 2 2 0 0 0 0 0 0 0 0
..............................TGGGCCGGTTCTCTTTGTTGCAG...................................................................................................................................................................................................... 23 0 8 0.38 3 3 0 0 0 0 0 0 0 0
................................GGCCGGTTCTCTTTGTTGCAGTC.................................................................................................................................................................................................... 23 0 8 0.38 3 0 3 0 0 0 0 0 0 0
...........................................................................................................................................................................................GGGGCCACGTCGTGCCTTCTCT.......................................... 22 0 6 0.33 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGGGGCCACGTCGTGCCTTCTCT.......................................... 23 0 6 0.33 2 2 0 0 0 0 0 0 0 0
....................................GGTTCTCTTTGTCGCAGTCGCTTT............................................................................................................................................................................................... 24 1 9 0.33 3 0 3 0 0 0 0 0 0 0
............................................................................................................................................CCGTCCCCTGCTCTACTAGCGT......................................................................................... 22 0 7 0.29 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................GATTGCTCCGTCCCCTGCTCTACT.............................................................................................. 24 0 7 0.29 2 2 0 0 0 0 0 0 0 0
...................................................AGTCGCTTTGTGGCTGGCCGCCGC................................................................................................................................................................................ 24 0 18 0.28 5 5 0 0 0 0 0 0 0 0
...........................................................................................................................................................CTAGCGTTCAGCCGCCGCTGGGGTT....................................................................... 25 0 11 0.27 3 3 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ACGTCGTGACTTCTCGCCTTT..................................... 21 3 11 0.27 3 2 0 0 0 0 1 0 0 0
..........................CCCGTGGGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 28 0 8 0.25 2 2 0 0 0 0 0 0 0 0
...............................GGGCCGGTTCTCTTTGTTGCAGTCG................................................................................................................................................................................................... 25 0 8 0.25 2 2 0 0 0 0 0 0 0 0
..........................CCCGTGGGCCGGTTCTCTTTGT........................................................................................................................................................................................................... 22 0 8 0.25 2 2 0 0 0 0 0 0 0 0
...............................................................................CGGTTATTGTTGCGCTCGCGT....................................................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0
.............................GTGGGCCGGTTCTCTTTGTTGCAG...................................................................................................................................................................................................... 24 0 8 0.25 2 2 0 0 0 0 0 0 0 0
.............................TTGGGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 25 1 8 0.25 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GTGCCTTCTCTCCTCTTTTCGAACG............................ 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0
.................................................................................GTTATTGTTGCGCTCGCGTTGTTT.................................................................................................................................................. 24 0 4 0.25 1 0 1 0 0 0 0 0 0 0
...................................CGGTTCTCTTTGTTGCAGTCGC.................................................................................................................................................................................................. 22 0 8 0.25 2 0 2 0 0 0 0 0 0 0
.........................CCCCGTGGGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 29 0 8 0.25 2 2 0 0 0 0 0 0 0 0
...................................AGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 19 1 8 0.25 2 2 0 0 0 0 0 0 0 0
....................................GGTTCTCTTTGTTGCAGTCGCTTT............................................................................................................................................................................................... 24 0 8 0.25 2 2 0 0 0 0 0 0 0 0
...................................CGGCTCTCTTTGCGGCAGTC.................................................................................................................................................................................................... 20 3 9 0.22 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CGTGCCTCCTCTCCTCTTTTCGAAC............................. 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CCACGTCGTGCCTTCTCTCCTCT..................................... 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GCCACGTCGTGCCTTCTCTCCTCT..................................... 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CGTGCCTTCTCTCCTCTTTTCGAAC............................. 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGGGCCACGTCGTGCCTTCTCTCCTCT..................................... 27 1 5 0.20 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGCCACGTCGTGCCTTCTCTCCT....................................... 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTCGTGCCTTCTCTCCTCTTTT.................................. 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGCCACGTCGTGCCTTCTCTCCTCTTT................................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................CACCCCTGCTCTACTAGCGTTCAGCCGCCG............................................................................... 30 2 5 0.20 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................CCACGTCGTGCCTTCTCTCCTCTT.................................... 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................AGCCGCCGCTGGGGTTTTGCGT................................................................. 22 0 11 0.18 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................CTAGCGTTCAGCCGCCGCTGGGGT........................................................................ 24 0 11 0.18 2 1 0 0 0 0 0 1 0 0
.................................................GCAGTCGCTTTGTGGCTGGCCGCCG................................................................................................................................................................................. 25 0 17 0.18 3 3 0 0 0 0 0 0 0 0
..........................................................................................................................................CTCCGTCCCCTGCTCTACTAGCGTTC....................................................................................... 26 0 6 0.17 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GGGTTTTGCGTGGGGGCCACGTCGT................................................... 25 0 6 0.17 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTTGCGTGGGGGCCACGTCGTGCCT............................................... 25 0 6 0.17 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CGCCGCTGGGGTTTTGCGT................................................................. 19 0 12 0.17 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................TCCGTCCCCTGCTCTACTAGCGTTC....................................................................................... 25 0 6 0.17 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................TCCGTCCCCTGCTCTACTAGCGTT........................................................................................ 24 0 6 0.17 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGCGTGGGGGCCACGTCGTGCCTTCT............................................ 26 0 6 0.17 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................CGTCCCCTGCTCTACTAGCGTTC....................................................................................... 23 0 6 0.17 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGGGGCCACGTCGTGCCTT.............................................. 19 0 6 0.17 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................CTCCGTCCCCTGCTCTACTAGCG.......................................................................................... 23 0 7 0.14 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TGCTCCGTCCCCTGCTCTACTAGCGT......................................................................................... 26 0 7 0.14 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................ATTGCTCCGTCCCCTGCTCTACT.............................................................................................. 23 0 7 0.14 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................TTGTCTGGGCGATTTCTCCGTCCC........................................................................................................ 24 1 7 0.14 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................ATTGCTCCGTCCCCTGCTCT................................................................................................. 20 0 7 0.14 1 1 0 0 0 0 0 0 0 0
....................................................................................................................GCTTCATTTGTCTGGGCGAT................................................................................................................... 20 0 14 0.14 2 0 0 0 1 0 1 0 0 0
...................................................................................................................................GCGATTGCTCCGTCCCCTGCTCTAC............................................................................................... 25 0 7 0.14 1 1 0 0 0 0 0 0 0 0
................................GGCCGTTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 22 1 8 0.13 1 1 0 0 0 0 0 0 0 0
.............................GTGGGCCGGTTCTCTTTGTTG......................................................................................................................................................................................................... 21 0 8 0.13 1 1 0 0 0 0 0 0 0 0
.................................GCCGGTTCTCTTTGTTGCAGTCGC.................................................................................................................................................................................................. 24 0 8 0.13 1 1 0 0 0 0 0 0 0 0
..............................AGGGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 24 1 8 0.13 1 1 0 0 0 0 0 0 0 0
................................TGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 22 1 8 0.13 1 1 0 0 0 0 0 0 0 0
...........................CCGTGGGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 27 0 8 0.13 1 1 0 0 0 0 0 0 0 0
..........................CCCGTGGGCCGGTTCTCTTTGTTGCATT..................................................................................................................................................................................................... 28 1 8 0.13 1 0 0 0 0 0 0 1 0 0
...............................GGGCCGGTTCTCTTTGTTGCAGTCGC.................................................................................................................................................................................................. 26 0 8 0.13 1 1 0 0 0 0 0 0 0 0
..........................CCCGTGGGCCGGTTCTCTTTGTT.......................................................................................................................................................................................................... 23 0 8 0.13 1 1 0 0 0 0 0 0 0 0
........................GCCCCGTGGGCCGGTTCTCTTTGTT.......................................................................................................................................................................................................... 25 0 8 0.13 1 1 0 0 0 0 0 0 0 0
................................GGCCGGTTCTCTTTGTTGCAGTCG................................................................................................................................................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0 0 0
................................GGCCGGTTCTCTTTGTTGCAAT..................................................................................................................................................................................................... 22 1 8 0.13 1 1 0 0 0 0 0 0 0 0
.................................GCCGGTTCTCTTTGTTGCAG...................................................................................................................................................................................................... 20 0 8 0.13 1 1 0 0 0 0 0 0 0 0
.........................CCCCGTGGGCCGGTTCTCTTTGTTGCAG...................................................................................................................................................................................................... 28 0 8 0.13 1 1 0 0 0 0 0 0 0 0
...............................GGGCCGGTTCTCTTTGTTGCAGTC.................................................................................................................................................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0 0 0
...............................GGGCCGGTTCTCTTCGTTGCAGTCGCT................................................................................................................................................................................................. 27 1 8 0.13 1 1 0 0 0 0 0 0 0 0
.............................GTGGGCCGGTTCTCTTTGTT.......................................................................................................................................................................................................... 20 0 8 0.13 1 1 0 0 0 0 0 0 0 0
...............................TGGCCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 23 1 8 0.13 1 1 0 0 0 0 0 0 0 0
.....................................GTTCTCTTTGTTGCAGTCGCTT................................................................................................................................................................................................ 22 0 9 0.11 1 1 0 0 0 0 0 0 0 0
....................................................GTCGCTTTGTGGCTGGCCGCCGC................................................................................................................................................................................ 23 0 18 0.11 2 2 0 0 0 0 0 0 0 0
..................................................CAGTCGCTTTGTGGCTGGCCGCCGC................................................................................................................................................................................ 25 0 18 0.11 2 2 0 0 0 0 0 0 0 0
...................................CGGTTCTCTTTGCGGCAGTC.................................................................................................................................................................................................... 20 2 9 0.11 1 1 0 0 0 0 0 0 0 0
........................................CTCTTTGTTGCAGTTGGTTAG.............................................................................................................................................................................................. 21 3 9 0.11 1 0 0 0 0 1 0 0 0 0
.................................................GCAGTCGCTTTGTGGCTGGCCGC................................................................................................................................................................................... 23 0 19 0.11 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCAGCCGCCGCTGGGGTTTTGCG.................................................................. 23 0 10 0.10 1 1 0 0 0 0 0 0 0 0
................................CACCGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 22 2 10 0.10 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTCAGCCGCCGCTGGGGTTTTGCGT................................................................. 25 0 10 0.10 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GGGACCACGTCTTGCCTTGT............................................ 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0
.......................................TCTCTTTGTCGCAGTCGCTTTGTGGCT......................................................................................................................................................................................... 27 1 10 0.10 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................ACGTTCAGCCGCCGCTGGGGT........................................................................ 21 1 11 0.09 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................AAACTAGCGTTCAGCCGCCGCTGGGGTT....................................................................... 28 2 11 0.09 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................TAGCCGCCGCTGGGGTTTTGCGT................................................................. 23 1 11 0.09 1 1 0 0 0 0 0 0 0 0
.................................AACGGTTCTCTTTGTTGCAGT..................................................................................................................................................................................................... 21 2 11 0.09 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................GTTCAGCCGCCGCTGGGGTT....................................................................... 20 0 11 0.09 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................CTAGCGTTCAGCCGCCGCTGGGGTTT...................................................................... 26 0 11 0.09 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................CTACTAGCGTTCAGCCGCCGCTGGGGT........................................................................ 27 0 11 0.09 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................AACTAGCGTTCAGCCGCCGCTGGGGTTT...................................................................... 28 1 11 0.09 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................ACAGCCGCCGCTGGGGTTTTGCGT................................................................. 24 1 11 0.09 1 1 0 0 0 0 0 0 0 0
.......................................................................................GTTGCGCTCGCGTTGTTTGG................................................................................................................................................ 20 0 11 0.09 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................CGTTCAGCCGCCGCTGGGGTTT...................................................................... 22 0 11 0.09 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GCTCTACTAGCGTTCAGCCGCCGCTG............................................................................ 26 0 12 0.08 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................TGCTCTACTAGCGTTCAGCCGCCGCTG............................................................................ 27 0 12 0.08 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCTTTTCGAACGAGGCTTT..................... 19 1 12 0.08 1 1 0 0 0 0 0 0 0 0
............CAGCCGTCTTGGGCCCCGTGGGCCGGT.................................................................................................................................................................................................................... 27 0 12 0.08 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................CTACTAGCGTTCAGCCGCCGC.............................................................................. 21 0 12 0.08 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GCCGCCGCTGGGGTTTTGCGT................................................................. 21 0 12 0.08 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................CAGTCGCCGCTGGGGTTTTGCGT................................................................. 23 1 12 0.08 1 1 0 0 0 0 0 0 0 0
..................................CGGGTTCTCTTTGCGGCAGTC.................................................................................................................................................................................................... 21 3 13 0.08 1 1 0 0 0 0 0 0 0 0
.................................................................TGGCCGCCGCGGTGCGGT........................................................................................................................................................................ 18 0 13 0.08 1 1 0 0 0 0 0 0 0 0
..............................................................GGCTGGCCGCCGCGGTGCGGT........................................................................................................................................................................ 21 0 13 0.08 1 0 0 0 1 0 0 0 0 0
....................................GGCTCTCTTTGCGGCAGTCG................................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TGGGGTTTTGCGTGGGGGCCACGT...................................................... 24 0 14 0.07 1 1 0 0 0 0 0 0 0 0
..................TATCGGGCACCGTGGGCCGGTTC.................................................................................................................................................................................................................. 23 3 15 0.07 1 0 0 0 0 0 1 0 0 0
....................................GGTTCTCTTTGCGGCAGT..................................................................................................................................................................................................... 18 2 16 0.06 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GGGTTTTGCGTGGGGGCCACGT...................................................... 22 0 16 0.06 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................GGTTTTGCGTGGGGGCCACGT...................................................... 21 0 16 0.06 1 1 0 0 0 0 0 0 0 0
.................................................GCAGTCGCTTTGTGGCTGGCCGCCGCG............................................................................................................................................................................... 27 0 17 0.06 1 1 0 0 0 0 0 0 0 0
.............................................................TGGTCGGCCGCCGCGGAGCGG......................................................................................................................................................................... 21 3 17 0.06 1 1 0 0 0 0 0 0 0 0
...................................................AGTCGCTTTGTGGCTGGCCGCCG................................................................................................................................................................................. 23 0 18 0.06 1 1 0 0 0 0 0 0 0 0
..................................................CAGTCGCTTTGTGGCTGGCCGCCGCA............................................................................................................................................................................... 26 1 18 0.06 1 1 0 0 0 0 0 0 0 0
.....................................................TCGCTTTGTGGCTGGCCGCC.................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................GATGTTGGGGGAACTGTAG...................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................................TCGCGGTGTTTGGCGAGCT.......................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_singleton_3671:16996-17246 + dps_2369 CGGCACCGCAAAGTCGGCAGAACCCGGGGCACC-CG--GCCAAGAGAAA---CAACGTCAGCGAAACACCGACCGGC----------------------------------------GGCGCCACGCCAATAACAACGCGAGCGCAACAAACCCCTTGACAGCGAAGTAAACAGACCCGCTAACGAGGCAGGGGA----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGGCGACCCCAAAACGCACCCCCGGTGCAGCACGGAAGAGAGGAGAAAAGCTTGCTCCGCAAGTACGGACCCTGCAGAACGGA
droPer2 scaffold_70:34536-34786 - CGGCACCGCAGAGTCGGCAGAACCCGGGGCACC-TG--GCCAAGAGAAA---CAACGTCAGCGAAACACCGACCGGC----------------------------------------GGCGCCACGCCAACAACAACGCGAGCGCAACAAACCCCTTGACAACGAAGTAAACAGACCCGGTAACGAGGCAGGGGA----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGGCGACCCCAAAACGCACCCCCGGTGCAGCACGGAAGAGAGGAGAAAAGCTTGCTCCTTAAGTACGGACCTGGCAGAACGGC
droBip1 scf7180000396340:10378-10412 - GGGGATGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----------GATAACAAGTCGGGGGCGTCTTCA------------------------------------------------------------------------
droKik1 scf7180000299118:12193-12371 - CGAACA--GAGTAGCAGCAACAGCAGAGACACAGCG--GCCAAGGATAC---CCGCGTCAACGGCGGAAGCACCGAG----------------------------------------GAAACCAGC-----------------ACGAAGAGA-------------------------------------------TGTCGCATCAGGACGATAGCAACAGAAGACAAGGATCCCCGCGGACGGCGGAGGAACACACGAC----------GATAGCAGCACAGCAGCAGCTCCAGAA---------------------------------------------------------------------
droFic1 scf7180000454157:32716-32810 + CAGCACCAGCAA--CAGCAACAGCAG--------------------------------------------------CAGCAGCACCAGCAGCCGCAACAACAGCAACAGCAGCAGCCGTTGCCGCTGCAGCAGCTGCGCAAGCGCA-----------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------
droEle1 scf7180000487339:24303-24309 + CCATCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000766148:16790-16940 - TAGCAACAACAAGGCAAACGAAGGCGACA--CC-AAATACC-AGGGAAACGACCACGGCAACAACACGGCAAACGATGACGACACCAACAACCAAAG--------------------------------------AAACGACCACGGCAAAC-----------------------------------------------------------------------------------------GATGAC---------AACAATAACAGCCAA---GGAAACGACACGGCAAAC--AA---------------------------------------------------------------------
droBia1 scf7180000302254:29484-29602 - CAACGCCAGC------------------------------CAGCGACAA---CAACATCAGCAG-----CCAGCT------------------TCGACAACGACAA---CAGCAGCCA-----GCAGCTACAACATCACAAGCG--------------------------------------------------------------------------------------------------GCAAC---------AACAACAGCAGCTAA---CAACAAAACAAAACCCTC---G---------------------------------------------------------------------
droTak1 scf7180000415576:20752-20807 - GGGAACCGCCGAGGAA--------------------ATTCC-A----------------------------------------------------------------------------------------------------GGGAACAGC--------------------------------------------------------------------------------------------------------------------CGAGGACAAGCCAGGGAACCGCCG---A---------------------------------------------------------------------
droSec2 scaffold_5:92738-92749 + AGGCAACGCAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:22208801-22208929 + AAACACCGGAAAAGCAGCACATGACGGGTCACA------CT-AAGGAAAC-ACTATGG-------TCATCAAGTGGC----------------------------------------AACGCCGCGCCAACAAAA--GTTATCGGAAACAATCGATCGACGGCT-AGTAGTGTGACCAGATGGCGA-------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGGCACCGCAAAGTCGGCAGAACCCGGGGCACC-CG--GCCAAGAGAAA---CAACGTCAGCGAAACACCGACCGGC----------------------------------------GGCGCCACGCCAATAACAACGCGAGCGCAACAAACCCCTTGACAGCGAAGTAAACAGACCCGCTAACGAGGCAGGGGA----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGGCGACCCCAAAACGCACCCCCGGTGCAGCACGGAAGAGAGGAGAAAAGCTTGCTCCGCAAGTACGGACCCTGCAGAACGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................AA---CAACGTCAGCGAAACACCGACC...................................................................................................................................................................................................................................................................................................2492.442202110000000
...............................................AA---CAACGTCAGCGAAACACCGAC....................................................................................................................................................................................................................................................................................................2390.4440310000000
..................................................................................................................................................................................................A----------------------------------------------------------CGAGAT----------GATCGCAAGTCGG...................................................................................20130.3141000000030
..................................................................................................................................TAACAACGCGAGCGCAACAAACCCCTTG...............................................................................................................................................................................................................2840.2510100000000
..............................................................................................................................CCAATAACAACGCGAGCGCAACAAA......................................................................................................................................................................................................................2540.2510100000000
........................................................GTCAGCGAAACACCGACCGGC----------------------------------------GG......................................................................................................................................................................................................................................................23200.2550500000000
...............................................AA---CAACGTCAGCGAAACACCGACCG..................................................................................................................................................................................................................................................................................................2590.2220200000000
...............................................AA---CAACGTCAGCGAAACACCGA.....................................................................................................................................................................................................................................................................................................2290.2220200000000
...................................................................................................................................................................................................................................................................................................................TGCAGCACGGAAGAGAGGAGAAAAGC................................2650.2010000000010
...................................................................................................................................................................................................................................................................................................................TGCAGCACGGAAGAGAGGAGAAAAG.................................2550.2010000000100
........................................................................................................................................CGCGAGCGCAACAAACCCCTTGA..............................................................................................................................................................................................................2350.2010100000000
........................................................................................................................................CGCGAGCGCAACAAACCCCTTGAC.............................................................................................................................................................................................................2450.2010100000000
................................................A---CAACGTCAGCGAAACACCGACC...................................................................................................................................................................................................................................................................................................23160.1930300000000
..................................................................................................................................................................................................................................................................T----------GATCGCAAGTCGGCGGCGACCCCA........................................................................25110.1820100000100
.......................................................................................................................................................................................................................................................................................................................................................AGTACGGACCCTGCAGAACGG.2160.1710000000010
.............................................................................................................................................................................................................................................................CGAGAT----------GATCGCAAGTCGG...................................................................................19130.1520000000020
....................................................................................................................................................................................TAACGAGGCAGGGGA----------------------------------------------------------CGAGAT----------................................................................................................2170.1410000001000
................................................A---CAACGTCAGCGAAACACCGAC....................................................................................................................................................................................................................................................................................................22160.1320200000000
..............................................AAA---CAACGTCAGCGAAACACCGACC...................................................................................................................................................................................................................................................................................................2590.1110100000000
...............................................AA---CAACGTCAGCGAAACACCG......................................................................................................................................................................................................................................................................................................2190.1110100000000
........................................................GTCAGCGAAACACCGACCGGC----------------------------------------GGC.....................................................................................................................................................................................................................................................24180.1120200000000
...............................................AA---CAACGTCAGCGAAACACCGACCGGC----------------------------------------........................................................................................................................................................................................................................................................2790.1110100000000
...................................................................................................................................AACAACGCGAGCGCAACAAACCCC..................................................................................................................................................................................................................24100.1010100000000
......................................................................................................................................................................................................................................................................................TCGGCGGCGACCCCAAAACGCACCCC.............................................................26100.1010100000000
.....................................................................................................................................CAACGCGAGCGCAACAAACC....................................................................................................................................................................................................................20110.0910000001000
......................................................................................................................................................................................................................................................................................TCGGCGGCGACCCCAAAACGCAC................................................................23110.0910100000000
..............CGGCAGAACCCGGGGCACC-...........................................................................................................................................................................................................................................................................................................................................19120.0810100000000
.................................................................................................................................................................................................GA----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGGC...............................................................................25120.0810100000000
.........................................................TCAGCGAAACACCGACCGGC----------------------------------------GGCGCCA.................................................................................................................................................................................................................................................27120.0810100000000
...........AGTCGGCAGAACCCGGGGCACC-CG--GCC....................................................................................................................................................................................................................................................................................................................................27120.0810100000000
..................................................................................................................................................................................................................................................................T----------GATCGCAAGTCGGCGGCGACCC..........................................................................23120.0810100000000
................................................................................................................................................................................................................................................................GAT----------GATCGCAAGTCGGCGGC...............................................................................20120.0810100000000
.............TCGGCAGAACCCGGGGCACC-CG--GCCA...................................................................................................................................................................................................................................................................................................................................26120.0810100000000
...............................................................................................................................................................................................GGGA----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGGC...............................................................................27120.0810000000010
..................................................................................................................................................................................................A----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGGCGA.............................................................................26120.0810100000000
.............TCGGCAGAACCCGGGGCACC-CG--GCC....................................................................................................................................................................................................................................................................................................................................25120.0810100000000
.............................................................................................................................................................................................................................................................CGAGAT----------GATCGCAAGTCGGCGGC...............................................................................23120.0810100000000
..............CGGCAGAACCCGGGGCACC-CG--GC.....................................................................................................................................................................................................................................................................................................................................23120.0810000000100
...................................................................................................................................................................GAAGTAAACAGACCCGCTAACG....................................................................................................................................................................................22120.0810100000000
..................................................................................................................................................................................................................................................................T----------GATCGCAAGTCGGCGGCGACA...........................................................................22120.0810100000000
...............................................................................................................................................................................................................................................................AGAT----------GATCGCAAGTCGGCGG................................................................................20130.0810000000010
..............................................................GAAACACCGACCGGC----------------------------------------GGCGCCA.................................................................................................................................................................................................................................................22130.0810100000000
..................................................................................................................................................................................................A----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGG................................................................................23130.0810100000000
.....................................................................................................................................................................AGTAAACAGACCCGCTAACGAGGC................................................................................................................................................................................24130.0810100000000
.................................................................................................................................................................................................GA----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGG................................................................................24130.0810000000100
..................................................................................................................................................................................................A----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGC..................................................................................21130.0810100000000
................................................................................................................................................................................................GGA----------------------------------------------------------CGAGAT----------GATCGCAAGTCGG...................................................................................22130.0810000000010
..................AGAACCCGGGGCACC-CG--GCC....................................................................................................................................................................................................................................................................................................................................20150.0710100000000
................................................A---CAACGTCAGCGAAACAC........................................................................................................................................................................................................................................................................................................18160.0610100000000
................................................A---CAACGTCAGCGAAACACCGACCGG.................................................................................................................................................................................................................................................................................................25160.0610100000000
....................................................CAACGTCAGCGAAACACCGACCG..................................................................................................................................................................................................................................................................................................23170.0610100000000
............................................................GCGAAACACCGACCGGC----------------------------------------GGCGC...................................................................................................................................................................................................................................................22180.0610100000000
.......................................................CGTCAGCGAAACACCGACCGGC----------------------------------------........................................................................................................................................................................................................................................................22190.0510100000000
.........................................................TCAGCGAAACACCGACCGGC----------------------------------------GG......................................................................................................................................................................................................................................................22200.0510100000000
........................................................GTCAGCGAAACACCGACCGGC----------------------------------------GT......................................................................................................................................................................................................................................................23200.0510100000000
........................................................GTCAGCGAAACACCGACCGGC----------------------------------------........................................................................................................................................................................................................................................................21200.0510100000000
droPer2
CGGCACCGCAGAGTCGGCAGAACCCGGGGCACC-TG--GCCAAGAGAAA---CAACGTCAGCGAAACACCGACCGGC----------------------------------------GGCGCCACGCCAACAACAACGCGAGCGCAACAAACCCCTTGACAACGAAGTAAACAGACCCGGTAACGAGGCAGGGGA----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGGCGACCCCAAAACGCACCCCCGGTGCAGCACGGAAGAGAGGAGAAAAGCTTGCTCCTTAAGTACGGACCTGGCAGAACGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................AAGTAAACAGACCCGGTAACGA...................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................................................................................................................................................................AGAAAAGCTTGCTCCTTAAGTACGGACC............2811.001010000
....................................................................................................................................................................AAGTAAACAGACCCGGTAACGAGG.................................................................................................................................................................................2411.001010000
................GCAGAACCCGGGGCACC-TG--.......................................................................................................................................................................................................................................................................................................................................1920.501000001
...............................................AA---CAACGTCAGCGAAACACCGACCGG.................................................................................................................................................................................................................................................................................................2680.131010000
...............................................AA---CAACGTCAGCGAAACACCGACC...................................................................................................................................................................................................................................................................................................2480.131010000
.............................................................................................................................................................................................................................................................CGAGAT----------GATCGCAAGTCGGCGG................................................................................22200.102200000
.................................................................................................................................................................................................GA----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGGC...............................................................................25200.102010001
.............................................................................................................................................................................................................................................................CGAGAT----------GATCGCAAGTCGGCGGCGACC...........................................................................27200.051010000
................................................................................................................................................................................................................................................................GAT----------GATCGCAAGTCGGCGGCGA.............................................................................22200.051000001
.................................................................................................................................................................................................GA----------------------------------------------------------CGAGAT----------GATCGCAAGTCGGCGG................................................................................24200.051000001
.............................................................................................................................................................................................................................................................CGAGAT----------GATCGCAAGTCGGCGGCGA.............................................................................25200.051010000
..................................................................................................................................................................................................................................................................T----------GATCGCAAGTCGGCGGCGACCCCAA.......................................................................26200.051010000
........................................................GTCAGCGAAACACCGACCGGC----------------------------------------GGCG....................................................................................................................................................................................................................................................25200.051010000
.................................................................................................................................................................................................................................................................AT----------GATCGCAAGTCGGCGGCGACCCCA........................................................................26200.051010000
........................................................GTCAGCGAAACACCGACCGGC----------------------------------------........................................................................................................................................................................................................................................................21200.051010000
droBip1
GGGGATGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----------GATAACAAGTCGGGGGCGTCTTCA------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGAACA--GAGTAGCAGCAACAGCAGAGACACAGCG--GCCAAGGATAC---CCGCGTCAACGGCGGAAGCACCGAG----------------------------------------GAAACCAGC-----------------ACGAAGAGA-------------------------------------------TGTCGCATCAGGACGATAGCAACAGAAGACAAGGATCCCCGCGGACGGCGGAGGAACACACGAC----------GATAGCAGCACAGCAGCAGCTCCAGAA---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAGCACCAGCAA--CAGCAACAGCAG--------------------------------------------------CAGCAGCACCAGCAGCCGCAACAACAGCAACAGCAGCAGCCGTTGCCGCTGCAGCAGCTGCGCAAGCGCA-----------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCATCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TAGCAACAACAAGGCAAACGAAGGCGACA--CC-AAATACC-AGGGAAACGACCACGGCAACAACACGGCAAACGATGACGACACCAACAACCAAAG--------------------------------------AAACGACCACGGCAAAC-----------------------------------------------------------------------------------------GATGAC---------AACAATAACAGCCAA---GGAAACGACACGGCAAAC--AA---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAACGCCAGC------------------------------CAGCGACAA---CAACATCAGCAG-----CCAGCT------------------TCGACAACGACAA---CAGCAGCCA-----GCAGCTACAACATCACAAGCG--------------------------------------------------------------------------------------------------GCAAC---------AACAACAGCAGCTAA---CAACAAAACAAAACCCTC---G---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGGAACCGCCGAGGAA--------------------ATTCC-A----------------------------------------------------------------------------------------------------GGGAACAGC--------------------------------------------------------------------------------------------------------------------CGAGGACAAGCCAGGGAACCGCCG---A---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSec2
AGGCAACGCAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAACACCGGAAAAGCAGCACATGACGGGTCACA------CT-AAGGAAAC-ACTATGG-------TCATCAAGTGGC----------------------------------------AACGCCGCGCCAACAAAA--GTTATCGGAAACAATCGATCGACGGCT-AGTAGTGTGACCAGATGGCGA-------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................TCACA------CT-AAGGAAAC-ACTATGG-------TCATC.......................................................................................................................................................................................................................................................................................................2711.00100100000000
.................................................................................................................................ACAAAA--GTTATCGGAAACAATCGA..................................................................................................................................................................................................................24120.25303000000000
..............................................................................................................................................................ACGGCT-AGTAGTGTGACCAGATGGCG....................................................................................................................................................................................26110.18201000010000
..............................................................................................................................................................ACGGCT-AGTAGTGTGACCAGATGGC.....................................................................................................................................................................................25120.17202000000000
...............................................................................................................................................................CGGCT-AGTAGTGTGACCAGATGGC.....................................................................................................................................................................................24120.17202000000000
........................................................................................................................................................CGATCGACGGCT-AGTAGTGTGACCAG..........................................................................................................................................................................................26130.15201010000000
..............................................................................................................................................................ACGGCT-AGTAGTGTGACCAGATG.......................................................................................................................................................................................23140.14200200000000
............................................................................................................................................ATCGGAAACAATCGATCGACGGC..........................................................................................................................................................................................................23110.09101000000000
..................................................................................................................................CAAAA--GTTATCGGAAACAATCGATC................................................................................................................................................................................................................25120.08101000000000
....................................................................................................................................................CAATCGATCGACGGCT-AGTAGTGTGACC............................................................................................................................................................................................28120.08100100000000
...........................................................................................................................................................TCGACGGCT-AGTAGTGTGACCAGATGG......................................................................................................................................................................................27130.08101000000000
..............................................................................................................................................................ACGGCT-AGTAGTGTGACCAGATGG......................................................................................................................................................................................24130.08101000000000
..............................................................................................................................................................ACGGCT-AGTAGTGTGACCAGA.........................................................................................................................................................................................21140.07101000000000
...................................................................................................................................................................T-AGTAGTGTGACCAGATGGCG....................................................................................................................................................................................21150.07100000100000
............AGCAGCACATGACGGGTCACA------......................................................................................................................................................................................................................................................................................................................................21200.05100001000000
.....................................................................................................................................................................AGTAGTGTGACCAGATGGC.....................................................................................................................................................................................19200.05101000000000

Generated: 05/18/2015 at 04:23 AM